RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7446
(340 letters)
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 56
Score = 32.0 bits (73), Expect = 0.010
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 170 YHCHVCNTCI---LKRDHHC 186
+HC CN C+ L+ H C
Sbjct: 35 FHCLKCNLCLTTNLRGKHKC 54
Score = 30.8 bits (70), Expect = 0.025
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 154 GWYFCAPC---ESVAPPRAYHCHVCNTCIL--KRDH-HCTFSACCIG 194
G Y+C+ C + YHC C C + K D HC C+
Sbjct: 1 GEYYCSICHLFDKDKRQ--YHCESCGICRIGPKEDFFHCLKCNLCLT 45
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei
[TaxId: 5691]}
Length = 249
Score = 29.9 bits (66), Expect = 0.35
Identities = 20/129 (15%), Positives = 32/129 (24%), Gaps = 4/129 (3%)
Query: 72 GANWEMNRDIVSFVFLV-LIVPLVFWFVVFIVIPATYPVFGFWQVYHILFSTFLLFQIVT 130
ANW+ N S L+ L V V+ +T+ + S
Sbjct: 8 AANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFV---HLAMTKERLSHPKFVIAAQ 64
Query: 131 NYVYVIMVDTSIHTVMLPSQLREGWYFCAPCESVAPPRAYHCHVCNTCILKRDHHCTFSA 190
N + T ++ + W E A + V + A
Sbjct: 65 NAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIA 124
Query: 191 CCIGHYNHR 199
C R
Sbjct: 125 CIGETLQER 133
>d1j2la_ g.20.1.1 (A:) Flavoridin (triflavin) {Habu snake
(Trimeresurus flavoviridis) [TaxId: 88087]}
Length = 68
Score = 26.7 bits (59), Expect = 0.89
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 175 CN--TCILKRDHHCTFSACC 192
C+ TC L+ C CC
Sbjct: 14 CDAATCKLRPGAQCADGLCC 33
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 257
Score = 28.3 bits (62), Expect = 1.4
Identities = 17/141 (12%), Positives = 35/141 (24%), Gaps = 11/141 (7%)
Query: 72 GANWEMNRD---IVSFVFLVLIVPLVFWFVVFIVIPATYPVFGFWQVYHILFSTFLLFQI 128
G NW+MN D + V + V + PA Y + ++ +
Sbjct: 16 GGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLVAAQNCYK 75
Query: 129 VTNYVYVIMVDTSIH-------TVMLPSQLREGWYFCAPCESVAPPRAYHCHVCNTCILK 181
V + + ++ ++ S+ R + +
Sbjct: 76 VPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEK-TVHALEAGIKVVFCI 134
Query: 182 RDHHCTFSACCIGHYNHRYFM 202
+ A N R
Sbjct: 135 GEKLEEREAGHTKDVNFRQLQ 155
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 25.6 bits (56), Expect = 1.6
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 169 AYHCHVCNTCILKRDHHCT----FSAC--CIGHYNHRYFM 202
Y C+ C + R HCT + C C +H + M
Sbjct: 6 VYTCNECKHHVETR-WHCTVCEDYDLCINCYNTKSHTHKM 44
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 246
Score = 27.9 bits (61), Expect = 1.7
Identities = 16/157 (10%), Positives = 29/157 (18%), Gaps = 5/157 (3%)
Query: 72 GANWEMNRDIVSFV-FLVLIVPLVFWFVVFIVIPATYPVFGFWQVYHILFSTFLLFQIVT 130
G NW+MN + + + +V P + +
Sbjct: 7 GGNWKMNGRKKNLGELITTLNAAKVPADTEVVCA---PPTAYIDFARQKLDPKIAVAAQN 63
Query: 131 NYVYVIMVDTSIHTVMLPSQLREGWYFCAPCESVAPPRAYHCHVCNTCILKRDHHCTFSA 190
Y T + + W E + +
Sbjct: 64 CYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRH-VFGESDELIGQKVAHALSEGLGVI 122
Query: 191 CCIGHYNHRYFMLFLFYLTVGTIYATYLNLFFIHNFV 227
CIG + N+ V
Sbjct: 123 ACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVV 159
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 27.5 bits (60), Expect = 2.0
Identities = 16/169 (9%), Positives = 41/169 (24%), Gaps = 18/169 (10%)
Query: 72 GANWEMNRDIVSFVFLV-LIVPLVF---WFVVFIVIPATYPVFGFWQVYHILFSTFLLFQ 127
ANW+ N + S L L F V + + + + +
Sbjct: 6 AANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFSTGIQNVS 65
Query: 128 IVTNYVYVIMVDTSIH-------TVMLPSQLREGWYFCAPCESVAPPRAYHCHVCNTCIL 180
N Y V I ++ + R+ ++ + + +
Sbjct: 66 KFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQAS-LKNNLKAVVC 124
Query: 181 KRDHHCTFSACCIGHYNHRYFMLFLFYLTVGTIYATYLNLFFIHNFVSF 229
+ + F+ + + N+ ++ +
Sbjct: 125 FGESLEQREQNKTIEVITKQVKAFVDLI------DNFDNVILVYEPLWA 167
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 51
Score = 24.8 bits (54), Expect = 2.6
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 9/30 (30%)
Query: 156 YFCAPCESVAPPRAYHCHVCNTCILKRDHH 185
+C CE C+ C + H
Sbjct: 14 IYCLTCE---------VPTCSMCKVFGIHK 34
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 25.3 bits (55), Expect = 3.6
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 8/53 (15%)
Query: 157 FCAPCESVAPPRAYHCHVCNTC--------ILKRDHHCTFSACCIGHYNHRYF 201
CA C + + Y + C C + C + C+ R
Sbjct: 7 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNR 59
>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 26.3 bits (56), Expect = 3.7
Identities = 4/50 (8%), Positives = 10/50 (20%)
Query: 152 REGWYFCAPCESVAPPRAYHCHVCNTCILKRDHHCTFSACCIGHYNHRYF 201
+ C P + + + C+ H +
Sbjct: 62 CRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFV 111
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
histolytica [TaxId: 5759]}
Length = 260
Score = 26.8 bits (58), Expect = 4.1
Identities = 21/146 (14%), Positives = 35/146 (23%), Gaps = 13/146 (8%)
Query: 72 GANWEMNRDIVSFVFLVLIV------PLVFWFVVFIVIPATYPVFGFWQVYHILFSTFLL 125
G NW+ N + S L V L V + +P Y +V IL
Sbjct: 8 GGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIY----IPKVQQILAGEANG 63
Query: 126 FQIVTNYVYVIMVDTSIHTVMLPSQLREGWYFCAPCESVAPPRAYHCHVCNTC---ILKR 182
I+ + + + L + + +H +
Sbjct: 64 ANILVSAENAWTKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAI 123
Query: 183 DHHCTFSACCIGHYNHRYFMLFLFYL 208
D AC R +
Sbjct: 124 DAGLKVIACIGETEAQRIANQTEEVV 149
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.2 bits (52), Expect = 4.7
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 154 GWYFCAPCESVAPPRAYHCHVC 175
FC C S C +C
Sbjct: 23 KKNFCMTCSSQVGNGPRLCLLC 44
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 25.6 bits (55), Expect = 9.3
Identities = 16/143 (11%), Positives = 33/143 (23%), Gaps = 12/143 (8%)
Query: 72 GANWEMN---RDIVSFV-FLVLIVPLVFWFVVFIVIPATY--PVFGFWQVYHILFSTFLL 125
NW++N + V L + V V I P Y + HI+
Sbjct: 7 MGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGA--- 63
Query: 126 FQIVTNYVYVIMVDTSIHTVMLPSQLREGWYFCAPCESVAPPRAYHCHVCNTCILKRDHH 185
+ + T + + + + E + + + ++
Sbjct: 64 ---QNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG 120
Query: 186 CTFSACCIGHYNHRYFMLFLFYL 208
T C
Sbjct: 121 LTPVLCIGETEAENEAGKTEEVC 143
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 247
Score = 25.6 bits (55), Expect = 9.3
Identities = 16/134 (11%), Positives = 34/134 (25%), Gaps = 7/134 (5%)
Query: 72 GANWEMN---RDIVSFVFLVLIVPLVFWFVVFIVIPATYPVFGFWQVYHILFSTFLLFQI 128
G N+++N + I V + + V I PATY ++ +
Sbjct: 7 GGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATY----LDYSVSLVKKPQVTVGA 62
Query: 129 VTNYVYVIMVDTSIHTVMLPSQLREGWYFCAPCESVAPPRAYHCHVCNTCILKRDHHCTF 188
Y+ T ++V + + E + + +
Sbjct: 63 QNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGV 122
Query: 189 SACCIGHYNHRYFM 202
C +
Sbjct: 123 ILCIGETLEEKKAG 136
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana
[TaxId: 5665]}
Length = 249
Score = 25.6 bits (55), Expect = 9.9
Identities = 21/151 (13%), Positives = 32/151 (21%), Gaps = 17/151 (11%)
Query: 72 GANWEMNRDIVSFVFLV-LIVPLVFWFVVFIVI--PATYPVFGFWQVYHILFSTFLLFQI 128
ANW+ N S LV + V V+ + V L + +
Sbjct: 8 AANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVH----IPLVQAKLRNPKYVISA 63
Query: 129 V----------TNYVYVIMVDTSIHTVMLPSQLREGWYFCAPCESVAPPRAYHCHVCNTC 178
I+ D +H V+L R +Y
Sbjct: 64 QNAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVI 123
Query: 179 ILKRDHHCTFSACCIGHYNHRYFMLFLFYLT 209
+ A LT
Sbjct: 124 ACIGETLQQREANQTAKVVLSQTSAIAAKLT 154
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.145 0.482
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,343,704
Number of extensions: 63975
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 39
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.9 bits)