BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7449
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 89/222 (40%), Gaps = 56/222 (25%)
Query: 84 GEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
GEK Y C C + + L +HQR HTGEKPY C C + + H + H+GEK
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 144 FXXXXXXXXXXXXXNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLF 203
+ NLR H RTH GEKPY C C +S
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPY---------------------ACPECGKSF- 115
Query: 204 GTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDS 263
QLA + H R HTGE+P++C C
Sbjct: 116 ---SQLA-------------------------------HLRAHQRTHTGEKPYKCPECGK 141
Query: 264 TFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+F R+ L H + HTGE+ YKC C + +R+D L VH R
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 201 SLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKI 260
S FG++ +A + P Y C C S + +H R HTGE+P++C
Sbjct: 2 SEFGSSSSVAQAALEPGEKP-------YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE 54
Query: 261 CDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI--KHKISICQNCGXX 318
C +F K+ L H + HTGE+ YKC C + +++ L H R K C CG
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114
Query: 319 XXXXXXXXXXHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFK 378
H R +G E+P Y C C + + H RTHTGEKP+K
Sbjct: 115 FSQLAHLRA-HQRTHTG-EKP---------YKCPECGKSFSREDNLHTHQRTHTGEKPYK 163
Query: 379 CTHCRYSASRRDTLDHHIQVSHLYKK 404
C C S SRRD L+ H Q +H KK
Sbjct: 164 CPECGKSFSRRDALNVH-QRTHTGKK 188
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 60/116 (51%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
C CG S L RH HTGEK Y+C C + +L+ HQR HTGEKPY+C C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 122 PYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEKPYKCSSC 177
+ +++ H + H+GEK + NL TH RTH GEKPYKC C
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 373 GEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALTKHDLD 432
GEKP+ C C S SR D L H Q +H +K ++CP C + K +L H T
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH---- 72
Query: 433 IKSDGIIQDAGTYILDTALSPEKRVKSRGHETVICHHCRDLLPYKIKDLVSHGELCSGVP 492
G + C C + +L +H +G
Sbjct: 73 ---------------------------TGEKPYKCPECGKSFSQRA-NLRAHQRTHTGE- 103
Query: 493 RPDGSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTG 552
+P + C C + H+R H H G KPYKC C ++ L H R HTG
Sbjct: 104 KP-----YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
Query: 553 EKPYACSLCDLKFSQNSQLKYHLTT 577
EKPY C C FS+ L H T
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRT 183
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 478 IKDLVSHGELCSGVPRPDGSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKS 537
I + S + P G + C C +S H+ +H H G KPYKC C
Sbjct: 1 ISEFGSSSSVAQAALEP-GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF 59
Query: 538 TQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+ L RH R HTGEKPY C C FSQ + L+ H T
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 39/206 (18%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
Y C C + + +H RTHTGEKP+KC C S S + L H Q +H +K ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKC 80
Query: 409 PVCDYRCTKKYNLQMHALTKHDLDIKSDGIIQDAGTYILDTALSPEKRVKSRGHETVICH 468
P C +++ NL+ H T G + C
Sbjct: 81 PECGKSFSQRANLRAHQRTH-------------------------------TGEKPYACP 109
Query: 469 HCRDLLPYKIKDLVSHGELCSGVPRPDGSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPY 528
C ++ L +H +G +P + C C + ++ H H G KPY
Sbjct: 110 ECGKSF-SQLAHLRAHQRTHTGE-KP-----YKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Query: 529 KCLHCSYKSTQSSCLGRHMRIHTGEK 554
KC C ++ L H R HTG+K
Sbjct: 163 KCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
C CG S L+ H HTGEK Y+C C + E++L HQR HTGEKPY C
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 121 CPYTARSSSYMLTHLKVHSGEK 142
C + + H + H+G+K
Sbjct: 167 CGKSFSRRDALNVHQRTHTGKK 188
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ SS + +HIR HTG++PFQC+IC F R L HI+ HTGE+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C AR D H +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ S ++ +HI H G KP++C C ++S L H+R HTGEKP+AC +C
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 564 KFSQNSQLKYH 574
KF+++ + K H
Sbjct: 71 KFARSDERKRH 81
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C SS + H+++H+G+K F +L TH+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 171 PYKCSSCDFQATQKIQVKKHVLI 193
P+ C C + + + K+H I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S + L RH HTG+K ++C C + + L H R HTGEKP++C C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 125 ARSSSYMLTHLKVHSGEK 142
S H K+H +K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+PY C C + + SS L RH+RIHTG+KP+ C +C FS++ L H+ T
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + ++L +H R HTG+KP+ C C S ++ TH++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 143 AFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
F + H + H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 349 YVC--YTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRF 406
Y C +CD + +HIR HTG+KPF+C C + SR D L HI+ +H +K F
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 407 QCPVC 411
C +C
Sbjct: 64 ACDIC 68
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 30/112 (26%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + + + +H+ I H Q F
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRI---HTGQKPF----------------------- 35
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
QC C + S + HIR HTGE+PF C IC F R H K H
Sbjct: 36 --QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
G F C C + +S H+ HI H G KP+ C C K +S RH +IH +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
+ C C + + + HIRTHTGEKPF C C +R D H ++ HL +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQK 89
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
Q C IC S + L H HTGEK + C C K A ++ K+H + H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ S+ + +HIR HTG++PFQC+IC F R L HI+ HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C AR D H +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ +S + +HI H G KP++C C ++S L H+R HTGEKP+AC +C
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 564 KFSQNSQLKYH 574
KF+++ + K H
Sbjct: 71 KFARSDERKRH 81
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C S+ + H+++H+G+K F +L TH+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 171 PYKCSSCDFQATQKIQVKKHVLI 193
P+ C C + + + K+H I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S + L RH HTG+K ++C C + + L H R HTGEKP++C C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 125 ARSSSYMLTHLKVHSGEK 142
S H K+H +K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+PY C C + ++S+ L RH+RIHTG+KP+ C +C FS++ L H+ T
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + +L +H R HTG+KP+ C C S ++ TH++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 143 AFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
F + H + H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + ++ ++ +H+ I H Q F
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRI---HTGQKPF----------------------- 35
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
QC C + S + HIR HTGE+PF C IC F R H K H
Sbjct: 36 --QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 349 YVC--YTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRF 406
Y C +CD + +HIR HTG+KPF+C C + SR D L HI+ +H +K F
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 407 QCPVC 411
C +C
Sbjct: 64 ACDIC 68
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
G F C C + +S H+ HI H G KP+ C C K +S RH +IH +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
+ C C + + + HIRTHTGEKPF C C +R D H ++ HL +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQK 89
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
Q C IC S + L H HTGEK + C C K A ++ K+H + H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ S+ + +HIR HTG++PFQC+IC F R L HI+ HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C AR D H +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ +S + +HI H G KP++C C ++S L H+R HTGEKP+AC +C
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 564 KFSQNSQLKYH 574
KF+++ + K H
Sbjct: 71 KFARSDERKRH 81
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C S+ + H+++H+G+K F +L TH+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 171 PYKCSSCDFQATQKIQVKKHVLI 193
P+ C C + + + K+H I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S + L RH HTG+K ++C C + + L H R HTGEKP++C C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 125 ARSSSYMLTHLKVHSGEK 142
S H K+H +K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + DL +H R HTG+KP+ C C S ++ TH++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 143 AFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
F + H + H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+PY C C + ++S+ L RH+RIHTG+KP+ C +C FS++ L H+ T
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 349 YVC--YTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRF 406
Y C +CD + +HIR HTG+KPF+C C + SR D L HI+ +H +K F
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 407 QCPVC 411
C +C
Sbjct: 64 ACDIC 68
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 30/112 (26%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + ++ + +H+ I H Q F
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRI---HTGQKPF----------------------- 35
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
QC C + S + HIR HTGE+PF C IC F R H K H
Sbjct: 36 --QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
G F C C + +S H+ HI H G KP+ C C K +S RH +IH +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
+ C C + + + HIRTHTGEKPF C C +R D H ++ HL +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQK 89
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
Q C IC S + L H HTGEK + C C K A ++ K+H + H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ S + +HIR HTG++PFQC+IC F R L HI+ HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C AR D H +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ +S + +HI H G KP++C C ++S L H+R HTGEKP+AC +C
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 564 KFSQNSQLKYH 574
KF+++ + K H
Sbjct: 71 KFARSDERKRH 81
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C S + H+++H+G+K F +L TH+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 171 PYKCSSCDFQATQKIQVKKHVLI 193
P+ C C + + + K+H I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S + L RH HTG+K ++C C + + L H R HTGEKP++C C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 125 ARSSSYMLTHLKVHSGEK 142
S H K+H +K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+PY C C + ++S L RH+RIHTG+KP+ C +C FS++ L H+ T
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + ++L +H R HTG+KP+ C C S ++ TH++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 143 AFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
F + H + H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 349 YVC--YTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRF 406
Y C +CD + + +HIR HTG+KPF+C C + SR D L HI+ +H +K F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 407 QCPVC 411
C +C
Sbjct: 64 ACDIC 68
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + ++ ++ +H+ I H Q F
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRI---HTGQKPF----------------------- 35
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
QC C + S + HIR HTGE+PF C IC F R H K H
Sbjct: 36 --QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
G F C C + +S H+ HI H G KP+ C C K +S RH +IH +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
+ C C + + + HIRTHTGEKPF C C +R D H ++ HL +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQK 89
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
Q C IC S + L H HTGEK + C C K A ++ K+H + H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ S + +HIR HTG++PFQC+IC F R L HI+ HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C AR D H +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ +SG + +HI H G KP++C C ++S L H+R HTGEKP+AC +C
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 564 KFSQNSQLKYH 574
KF+++ + K H
Sbjct: 71 KFARSDERKRH 81
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C S + H+++H+G+K F +L TH+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 171 PYKCSSCDFQATQKIQVKKHVLI 193
P+ C C + + + K+H I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+PY C C + +QS L RH+RIHTG+KP+ C +C FS++ L H+ T
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S + L RH HTG+K ++C C + + L H R HTGEKP++C C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 125 ARSSSYMLTHLKVHSGEK 142
S H K+H +K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + L +H R HTG+KP+ C C S ++ TH++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 143 AFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
F + H + H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 349 YVC--YTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRF 406
Y C +CD + +HIR HTG+KPF+C C + SR D L HI+ +H +K F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 407 QCPVCDYRCTKKYNLQMHA 425
C +C + + + H
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 30/112 (26%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + +Q + +H+ I H Q F
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI---HTGQKPF----------------------- 35
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
QC C + S + HIR HTGE+PF C IC F R H K H
Sbjct: 36 --QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
G F C C + +S H+ HI H G KP+ C C K +S RH +IH +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
+ C C + + + HIRTHTGEKPF C C +R D H ++ HL +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQK 89
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
Q C IC S + L H HTGEK + C C K A ++ K+H + H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ S + +HIR HTG++PFQC+IC F R L HI+ HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C AR D H +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ +S + +HI H G KP++C C ++S L H+R HTGEKP+AC +C
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 564 KFSQNSQLKYH 574
KF+++ + K H
Sbjct: 71 KFARSDERKRH 81
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C S + H+++H+G+K F +L TH+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 171 PYKCSSCDFQATQKIQVKKHVLI 193
P+ C C + + + K+H I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S + L RH HTG+K ++C C + + L H R HTGEKP++C C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 125 ARSSSYMLTHLKVH 138
S H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+PY C C + ++S L RH+RIHTG+KP+ C +C FS++ L H+ T
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + ++L +H R HTG+KP+ C C S ++ TH++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 143 AF 144
F
Sbjct: 62 PF 63
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 353 TCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCD 412
+CD + + +HIR HTG+KPF+C C + SR D L HI+ +H +K F C +C
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICG 69
Query: 413 YRCTKKYNLQMHA 425
+ + + H
Sbjct: 70 RKFARSDERKRHT 82
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + ++ ++ +H+ I H Q F
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRI---HTGQKPF----------------------- 35
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
QC C + S + HIR HTGE+PF C IC F R H K H
Sbjct: 36 --QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
G F C C + +S H+ HI H G KP+ C C K +S RH +IH
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 44/120 (36%), Gaps = 39/120 (32%)
Query: 281 ERTYKC--EFCDYTAARKDTLGVHVRIKHKISICQNCGXXXXXXXXXXXXHCRICSGKER 338
ER Y C E CD +R D L H+RI Q CRIC R
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ----------------CRICM---R 42
Query: 339 PDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQV 398
S +D + HIRTHTGEKPF C C +R D H ++
Sbjct: 43 NFSRSDH------------------LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKH 110
Q C IC S + L H HTGEK + C C K A ++ K+H + H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ S + +HIR HTG++PFQC+IC F R L HI+ HTGE+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C AR D H +I
Sbjct: 61 PFACDICGRKFARSDERKRHTKI 83
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ +S + +HI H G KP++C C ++S L H+R HTGEKP+AC +C
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 564 KFSQNSQLKYH 574
KF+++ + K H
Sbjct: 70 KFARSDERKRH 80
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C S + H+++H+G+K F +L TH+RTH GEK
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 171 PYKCSSCDFQATQKIQVKKHVLI 193
P+ C C + + + K+H I
Sbjct: 61 PFACDICGRKFARSDERKRHTKI 83
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S + L RH HTG+K ++C C + + L H R HTGEKP++C C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 125 ARSSSYMLTHLKVH 138
S H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+PY C C + ++S L RH+RIHTG+KP+ C +C FS++ L H+ T
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 55
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + ++L +H R HTG+KP+ C C S ++ TH++ H+GEK
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 143 AF 144
F
Sbjct: 61 PF 62
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 349 YVC--YTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRF 406
Y C +CD + + +HIR HTG+KPF+C C + SR D L HI+ +H +K F
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 62
Query: 407 QCPVCDYRCTKKYNLQMHA 425
C +C + + + H
Sbjct: 63 ACDICGRKFARSDERKRHT 81
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + ++ ++ +H+ I H Q F
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRI---HTGQKPF----------------------- 34
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
QC C + S + HIR HTGE+PF C IC F R H K H
Sbjct: 35 --QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
G F C C + +S H+ HI H G KP+ C C K +S RH +IH
Sbjct: 30 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 43/120 (35%), Gaps = 39/120 (32%)
Query: 281 ERTYKC--EFCDYTAARKDTLGVHVRIKHKISICQNCGXXXXXXXXXXXXHCRICSGKER 338
ER Y C E CD +R D L H+RI CRIC R
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRI----------------HTGQKPFQCRICM---R 41
Query: 339 PDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQV 398
S +D + HIRTHTGEKPF C C +R D H ++
Sbjct: 42 NFSRSDH------------------LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKH 110
Q C IC S + L H HTGEK + C C K A ++ K+H + H
Sbjct: 30 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
C +CG S +LK H HTG K Y+C C Y A + L KH R H+ E+P+ C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 122 PYTARSSSYMLTHLKVHSGEKA 143
PY +R+SS + HL+ H+G+
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSG 92
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 515 MRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
++ H+ H G+KPYKC C Y + SS L +H+RIH+ E+P+ C +C +SQL H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 575 L 575
L
Sbjct: 84 L 84
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 242 RMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGV 301
++ H+R HTG +P++CK CD +L+ H++ H+ ER +KC+ C Y + L V
Sbjct: 23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV 82
Query: 302 HVR 304
H+R
Sbjct: 83 HLR 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
Y+C +C+Y + SS + KH+R H+ ERPF+C+IC + L +H++ HTG+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 88 YECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFXXX 147
++C C + ++ LK H R HTG KPY C C Y A SS + HL++HS E+ F
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 148 XXXXXXXXXXNLRTHMRTHIGE 169
L H+R+H G+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 255 PFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
P +C++C F RK L H++ HTG + YKC+ CDY AA +L H+RI
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 28/95 (29%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDK 218
L+THMR H G KPYKC +CD+ A + KH+ I H D+
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI---HSDE------------------ 62
Query: 219 MPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGE 253
RP ++C C Y S SS++ H+R+HTG+
Sbjct: 63 --RP-----FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 342 STDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHL 401
S+ S + C C ++ +K H+R HTG KP+KC C Y+A+ +L+ H+++ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HS 60
Query: 402 YKKRFQCPVCDYRCTKKYNLQMH 424
++ F+C +C Y L +H
Sbjct: 61 DERPFKCQICPYASRNSSQLTVH 83
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
Y C TCDY + KH+R H+ E+PFKC C Y++ L H++
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGE 553
+ C TC+Y S + +H+ H +P+KC C Y S SS L H+R HTG+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 527 PYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHD 580
P+KC C ++ L HMR HTG KPY C CD + +S L HL D
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
C C + + + L +H H+ E+ ++C C Y + + L H R HTG+ S G
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 83 TGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLK---VHS 139
+G EC C K + LK H RKHTGEKP+ C C +L H ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 140 GEKAFXXXXXXXXXXXXXNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLII 194
E+ F LR HM +H GE PYKCSSC Q QK ++ H++ +
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKL 117
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHV 303
E+ F C +C TF+R+ L LH+ HTGE YKC C +K L H+
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 34/146 (23%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKIS 310
+G +C C F K L +H ++HTGE+ ++C C RK+ L ++H+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENL-----LEHEAR 57
Query: 311 ICQNCGXXXXXXXXXXXXHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRT 370
C N +++ F C C R ++ H+ +
Sbjct: 58 NCMN---------------------------RSEQVF--TCSVCQETFRRRMELRLHMVS 88
Query: 371 HTGEKPFKCTHCRYSASRRDTLDHHI 396
HTGE P+KC+ C ++ L H+
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 31/120 (25%)
Query: 495 DGSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCS---------YKSTQSSCLGR 545
GS C TC+ +++ H H G KP++C C + +C+ R
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 546 ----------------------HMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHDLPD 583
HM HTGE PY CS C +F Q L+ H+ H P
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 364 MKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKR--FQCPVCDYRCTKKYNL 421
+K H R HTGEKPF+C C R++ L H + + + F C VC ++ L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 422 QMHALT 427
++H ++
Sbjct: 83 RLHMVS 88
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 55 RAQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRK-HTG 112
R++ TC +C L+ H + HTGE Y+C C+ + + DL+ H K H+G
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
Y+C C SS + KH R HTGE+P++C C +F + L H + HTGE+ YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 288 FCDYTAARKDTLGVHVRI 305
C + +R D L H R
Sbjct: 65 ECGKSFSRSDHLSRHQRT 82
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ C C +S ++++H H G KPYKC C +QSS L +H R HTGEKPY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 560 LCDLKFSQNSQLKYHLTT 577
C FS++ L H T
Sbjct: 65 ECGKSFSRSDHLSRHQRT 82
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
C CG S + L++H HTGEK Y+C C + +DL+KHQR HTGEKPY C C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 122 PYTARSSSYMLTHLKVHSGEK 142
+ S ++ H + H +K
Sbjct: 67 GKSFSRSDHLSRHQRTHQNKK 87
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAF 144
EK Y+C C + ++L+KHQR HTGEKPY C C + SS + H + H+GEK +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 145 XXXXXXXXXXXXXNLRTHMRTHIGEK 170
+L H RTH +K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 32/52 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
KPYKC C +QSS L +H R HTGEKPY C C FSQ+S L+ H T
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
Y C C ++KH RTHTGEKP+KC C S S+ L H Q +H +K ++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYKC 63
Query: 409 PVCDYRCTKKYNLQMHALT 427
P C ++ +L H T
Sbjct: 64 PECGKSFSRSDHLSRHQRT 82
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
Y C C ++KH RTHTGEKP+KC C S SR D L H Q +H KK
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH-QRTHQNKK 87
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVR--IKHKIS 310
E+P++C C +F + L H + HTGE+ YKC C + ++ L H R K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 311 ICQNCG 316
C CG
Sbjct: 62 KCPECG 67
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 28/114 (24%)
Query: 169 EKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQY 228
EKPYKC C +Q ++KH T +K Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRT--------------------HTGEKP--------Y 33
Query: 229 QCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+C C SS + KH R HTGE+P++C C +F R L H + H ++
Sbjct: 34 KCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
G + C C +S +++H H G KPYKC C ++S L RH R H +K
Sbjct: 29 GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 374 EKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALT 427
EKP+KC C S S+ L H Q +H +K ++CP C ++ +LQ H T
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ + + HIR HTG++PFQC+IC F ++ +L+ HI+ HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C A T H +I
Sbjct: 62 PFACDICGRKFATLHTRTRHTKI 84
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ + ++ HI H G KP++C C +Q + L H+R HTGEKP+AC +C
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 564 KFSQNSQLKYHLTTRH 579
KF+ H TRH
Sbjct: 71 KFA-----TLHTRTRH 81
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C + + TH+++H+G+K F +L H+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 171 PYKCSSC 177
P+ C C
Sbjct: 62 PFACDIC 68
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S L H HTG+K ++C C + + L H R HTGEKP++C C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 125 ARSSSYMLTHLKVHSGEK 142
+ H K+H +K
Sbjct: 72 FATLHTRTRHTKIHLRQK 89
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 353 TCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVC 411
+CD + + HIR HTG+KPF+C C + S++ +L+ HI+ +H +K F C +C
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPFACDIC 68
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 30/116 (25%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + +QK + H+ I H Q F
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI---HTGQKPF----------------------- 35
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
QC C + + + HIR HTGE+PF C IC F T H K H ++
Sbjct: 36 --QCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + + +L H R HTG+KP+ C C + + H++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 143 AF 144
F
Sbjct: 62 PF 63
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
+ C C + + + HIRTHTGEKPF C C + T H ++ HL +K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKI-HLRQK 89
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 158 NLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHV 191
NL TH+R H G+KP++C C +Q+ + H+
Sbjct: 21 NLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI 54
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
G F C C + + + HI H G KP+ C C K RH +IH +K
Sbjct: 31 GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
Q C IC S L H HTGEK + C C K A + +H + H +K
Sbjct: 31 GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 75 LKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYML 132
L+ H KHTGEK Y+C + C + + + LK+HQR+HTG KP+ C C S ++
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 133 THLKVHSGEKAF 144
TH + H+GEK F
Sbjct: 84 THTRTHTGEKPF 95
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 505 CNYHTYKSGHMRQHINGHVGIKPYKC--LHCSYKSTQSSCLGRHMRIHTGEKPYACSLCD 562
CN +K H++ H H G KPY+C C + ++S L RH R HTG KP+ C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 563 LKFSQNSQLKYHLTT 577
KFS++ LK H T
Sbjct: 74 RKFSRSDHLKTHTRT 88
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
++ YQ CE S ++ +H R HTG +PFQCK C F R L H + HTGE+
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 283 TYKCEF--CDYTAARKDTLGVH 302
+ C + C AR D L H
Sbjct: 94 PFSCRWPSCQKKFARSDELVRH 115
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 241 SRMIKHIRNHTGERPFQC--KICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDT 298
S + H R HTGE+P+QC K C+ F R L H +RHTG + ++C+ C +R D
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 299 LGVHVRI 305
L H R
Sbjct: 82 LKTHTRT 88
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 505 CNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSL--CD 562
C +S +++H H G+KP++C C K ++S L H R HTGEKP++C C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 563 LKFSQNSQLKYH 574
KF+++ +L H
Sbjct: 104 KKFARSDELVRH 115
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 43/151 (28%)
Query: 251 TGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAARKDTLGVHVRIK 306
+ +RPF C C+ + + L +H ++HTGE+ Y+C+F C+ +R D L H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 307 HKISICQNCGXXXXXXXXXXXXHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKK 366
+ Q C TC + +K
Sbjct: 62 TGVKPFQ-------------------------------------CKTCQRKFSRSDHLKT 84
Query: 367 HIRTHTGEKPFKC--THCRYSASRRDTLDHH 395
H RTHTGEKPF C C+ +R D L H
Sbjct: 85 HTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
LKRH +HTG K ++C C K + + LK H R HTGEKP+SC
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 364 MKKHIRTHTGEKPFKC--THCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNL 421
++ H R HTGEKP++C C SR D L H Q H K FQC C + ++ +L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHL 82
Query: 422 QMHALT 427
+ H T
Sbjct: 83 KTHTRT 88
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 352 YTCDYHTGVR-----ECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRF 406
Y CD+ R + +K+H R HTG KPF+C C+ SR D L H + +H +K F
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPF 95
Query: 407 QC--PVCDYRCTKKYNLQMH 424
C P C + + L H
Sbjct: 96 SCRWPSCQKKFARSDELVRH 115
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 158 NLRTHMRTHIGEKPYKCS--SCDFQATQKIQVKKHVL-------IICQHCDQSLFGTTQQ 208
+L+ H R H GEKPY+C C+ + ++ Q+K+H C+ C Q F +
Sbjct: 23 HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC-QRKFSRSDH 81
Query: 209 LADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNH 250
L H RT ++ + + SC+ S +++H H
Sbjct: 82 LKTHTRTHTG----EKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKH 110
C C S + LK H HTGEK + C W C K A ++L +H H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+R Y SC+ + + HIR HTG++PFQC+IC F + L+ HI+ HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 283 TYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C A T H +I
Sbjct: 62 PFACDICGRKFATLHTRDRHTKI 84
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+C+ + ++ HI H G KP++C C +Q + L +H+R HTGEKP+AC +C
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 564 KFS 566
KF+
Sbjct: 71 KFA 73
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+PY C C + +Q + L H+RIHTG+KP+ C +C FSQ++ L H+ T
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT 56
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEK 170
E+PY+C C + + TH+++H+G+K F L H+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 171 PYKCSSC 177
P+ C C
Sbjct: 62 PFACDIC 68
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 30/112 (26%)
Query: 169 EKPYKC--SSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
E+PY C SCD + +QK + H+ I H Q F
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI---HTGQKPF----------------------- 35
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
QC C + + + +HIR HTGE+PF C IC F T D H K H
Sbjct: 36 --QCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
C S L H HTG+K ++C C + L +H R HTGEKP++C C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 125 ARSSSYMLTHLKVHSGEK 142
+ H K+H +K
Sbjct: 72 FATLHTRDRHTKIHLRQK 89
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 68/154 (44%)
Query: 253 ERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKIS 310
ERP+ C + CD F +K LD HI+ HTG++ ++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ------------------------- 36
Query: 311 ICQNCGXXXXXXXXXXXXHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRT 370
CRIC ++F+ HTG + +HIRT
Sbjct: 37 -------------------CRICM----------RNFSQ-------HTG----LNQHIRT 56
Query: 371 HTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
HTGEKPF C C + T D H ++ HL +K
Sbjct: 57 HTGEKPFACDICGRKFATLHTRDRHTKI-HLRQK 89
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + + +L H R HTG+KP+ C C + + H++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 143 AF 144
F
Sbjct: 62 PF 63
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 158 NLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHV 191
NL TH+R H G+KP++C C +Q + +H+
Sbjct: 21 NLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI 54
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
G F C C + + + QHI H G KP+ C C K RH +IH +K
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 56 AQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
Q C IC S L +H HTGEK + C C K A + +H + H +K
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCP 122
C V + + LK H HTGEK Y+C W C ++ A ++L +H RKHTG KP+ CG C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 123 YTARSSSYMLTHLKVH 138
+ S ++ H+K H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 511 KSGHMRQHINGHVGIKPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQN 568
KS H++ H+ H G KPYKC C ++ +S L RH R HTG KP+ C +C+ FS++
Sbjct: 29 KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS 88
Query: 569 SQLKYHL 575
L H+
Sbjct: 89 DHLALHM 95
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 240 SSRMIKHIRNHTGERPFQC--KICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKD 297
SS + H+R HTGE+P++C + CD F R L H ++HTG + ++C C+ + +R D
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89
Query: 298 TLGVHVR 304
L +H++
Sbjct: 90 HLALHMK 96
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
++ Y+ C++ S + +H R HTG +PFQC +C+ +F R L LH+KRH
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 364 MKKHIRTHTGEKPFKCT--HCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNL 421
+K H+RTHTGEKP+KCT C + +R D L H + H K FQC VC+ ++ +L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHL 91
Query: 422 QMH 424
+H
Sbjct: 92 ALH 94
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 533 CSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQNSQLKYH 574
C+ T+SS L H+R HTGEKPY C+ CD +F+++ +L H
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 261 CDSTFKRKQTLDLHIKRHTGERTYKC--EFCDYTAARKDTLGVHVRIKHKISICQNCG 316
C + + L H++ HTGE+ YKC E CD+ AR D L H R KH + CG
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCG 79
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 342 STDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
+ +K + CD+ + + +H R HTG KPF+C C S SR D L H++
Sbjct: 41 TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 93 CTYKTAYENDLKKHQRKHTGEKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFXXXXXX 150
CT + LK H R HTGEKPY C C + S + H + H+G K F
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 151 XXXXXXXNLRTHMRTH 166
+L HM+ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 159 LRTHMRTHIGEKPYKCS--SCDFQATQKIQVKKHV-------LIICQHCDQSLFGTTQQL 209
L+ H+RTH GEKPYKC+ CD++ + ++ +H C C++S F + L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS-FSRSDHL 91
Query: 210 ADHCR 214
A H +
Sbjct: 92 ALHMK 96
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 128 SSYMLTHLKVHSGEKAFXXXXXX--XXXXXXXNLRTHMRTHIGEKPYKCSSCDFQATQKI 185
SS++ HL+ H+GEK + L H R H G KP++C C+ ++
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89
Query: 186 QVKKHV 191
+ H+
Sbjct: 90 HLALHM 95
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 505 CNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
C++ +S + +H H G KP++C C+ ++S L HM+ H
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 499 RFVCFTCNY----HTY-KSGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHT 551
R TC+Y TY KS H++ H+ H G KPY C C +K +S L RH R HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 552 GEKPYACSLCDLKFSQNSQLKYHL 575
G +P+ C CD FS++ L H+
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHM 85
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCP 122
CG + + LK H HTGEK Y C W C +K A ++L +H RKHTG +P+ C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 123 YTARSSSYMLTHLKVH 138
S ++ H+K H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 240 SSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKD 297
SS + H+R HTGE+P+ C C F R L H ++HTG R ++C+ CD +R D
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 79
Query: 298 TLGVHVR 304
L +H++
Sbjct: 80 HLALHMK 86
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 198 CDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQ 257
CD + G T + H + + ++ Y C + S + +H R HTG RPFQ
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 258 CKICDSTFKRKQTLDLHIKRH 278
C+ CD F R L LH+KRH
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 364 MKKHIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNL 421
+K H+RTHTGEKP+ C C + +R D L H + H + FQC CD ++ +L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHL 81
Query: 422 QMH 424
+H
Sbjct: 82 ALH 84
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 261 CDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAARKDTLGVHVR--IKHKISICQNC 315
C T+ + L H++ HTGE+ Y C++ C + AR D L H R H+ CQ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 103 LKKHQRKHTGEKPYSCGH--CPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLR 160
LK H R HTGEKPY C C + S + H + H+G + F +L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 161 THMRTHI 167
HM+ H
Sbjct: 83 LHMKRHF 89
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 121 CPYTARSSSYMLTHLKVHSGEKAF--XXXXXXXXXXXXXNLRTHMRTHIGEKPYKCSSCD 178
C T SS++ HL+ H+GEK + L H R H G +P++C CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 179 FQATQKIQVKKHV 191
++ + H+
Sbjct: 73 RAFSRSDHLALHM 85
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 158 NLRTHMRTHIGEKPYKC--SSCDFQATQKIQVKKHVL-------IICQHCDQSLFGTTQQ 208
+L+ H+RTH GEKPY C C ++ + ++ +H CQ CD++ F +
Sbjct: 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA-FSRSDH 80
Query: 209 LADH 212
LA H
Sbjct: 81 LALH 84
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 354 CDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
C + + + +H R HTG +PF+C C + SR D L H++
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 505 CNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
C + +S + +H H G +P++C C ++S L HM+ H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 499 RFVCFTCNY----HTY-KSGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHT 551
R TC+Y TY KS H++ H+ H G KPY C C +K +S L RH R HT
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 552 GEKPYACSLCDLKFSQNSQLKYHL 575
G +P+ C CD FS++ L H+
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALHM 86
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCP 122
CG + + LK H HTGEK Y C W C +K A ++L +H RKHTG +P+ C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 123 YTARSSSYMLTHLKVH 138
S ++ H+K H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 240 SSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKD 297
SS + H+R HTGE+P+ C C F R L H ++HTG R ++C+ CD +R D
Sbjct: 21 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 80
Query: 298 TLGVHVR 304
L +H++
Sbjct: 81 HLALHMK 87
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 198 CDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQ 257
CD + G T + H + + ++ Y C + S + +H R HTG RPFQ
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 258 CKICDSTFKRKQTLDLHIKRH 278
C+ CD F R L LH+KRH
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 364 MKKHIRTHTGEKPFKC--THCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNL 421
+K H+RTHTGEKP+ C C + +R D L H + H + FQC CD ++ +L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHL 82
Query: 422 QMH 424
+H
Sbjct: 83 ALH 85
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 261 CDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAARKDTLGVHVR--IKHKISICQNC 315
C T+ + L H++ HTGE+ Y C++ C + AR D L H R H+ CQ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 103 LKKHQRKHTGEKPYSCGH--CPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLR 160
LK H R HTGEKPY C C + S + H + H+G + F +L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 161 THMRTHI 167
HM+ H
Sbjct: 84 LHMKRHF 90
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 121 CPYTARSSSYMLTHLKVHSGEKAF--XXXXXXXXXXXXXNLRTHMRTHIGEKPYKCSSCD 178
C T SS++ HL+ H+GEK + L H R H G +P++C CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 179 FQATQKIQVKKHV 191
++ + H+
Sbjct: 74 RAFSRSDHLALHM 86
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 158 NLRTHMRTHIGEKPYKC--SSCDFQATQKIQVKKHVL-------IICQHCDQSLFGTTQQ 208
+L+ H+RTH GEKPY C C ++ + ++ +H CQ CD++ F +
Sbjct: 23 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA-FSRSDH 81
Query: 209 LADH 212
LA H
Sbjct: 82 LALH 85
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 354 CDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
C + + + +H R HTG +PF+C C + SR D L H++
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 198 CDQSLFGTTQQLADHCRTCDKMPRPDRS----YQYQCYSCEYHSLYSSRMIKHIRNHTGE 253
CD++ F T +L H T + + P+++ Y +C +++ HIR HTGE
Sbjct: 31 CDRT-FSTMHELVTHV-TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 254 RPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEF--CD----YTAARKDTLGVHVRI 305
+PF C C F R + L +H + HTGE+ +KCEF CD ++ RK + VH
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Query: 306 K 306
K
Sbjct: 149 K 149
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 515 MRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQNSQ 570
+ HI H G KP+ C C +S L H R HTGEKP+ C CD +F+ +S
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 571 LKYHL 575
K H+
Sbjct: 138 RKKHM 142
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 121 CPYTARS--SSY-MLTHLKVHSGEKAFXXXXXX--XXXXXXXNLRTHMRTHIGEKPYKC- 174
CP +S + Y ++ H++VH+GEK F NL+ H RTH GEKP+KC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 175 -SSCDFQATQKIQVKKHVLI 193
CD + KKH+ +
Sbjct: 125 FEGCDRRFANSSDRKKHMHV 144
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 73 WRLKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGH--CPYTARSS 128
++L H HTGEK + C + C A +LK H+R HTGEKP+ C C +S
Sbjct: 76 YKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANS 135
Query: 129 SYMLTHLKVHSGEKA 143
S H+ VH+ +K+
Sbjct: 136 SDRKKHMHVHTSDKS 150
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 543 LGRHMRIHTGEKPYACSL--CDLKFSQNSQLKYHLTT 577
L H+R+HTGEKP+ C C F+++ LK H T
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEK 114
CG + + + LK H HTGEK ++C + C + A +D KKH HT +K
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 362 ECMKKHIRTHTGEKPFKC 379
E +K H RTHTGEKPFKC
Sbjct: 106 ENLKIHKRTHTGEKPFKC 123
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 252 GERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHK 308
G +C C F+ L++H++ HTGE+ YKCEFC+Y AA+K +L H+ HK
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 364 MKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSH 400
+ H+RTHTGEKP+KC C Y+A+++ +L +H++ H
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHV 191
L H+RTH GEKPYKC C++ A QK ++ H+
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHL 52
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 524 GIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
G +C +C + L H+R HTGEKPY C C+ +Q + L+YHL H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
H+R HTGE+P++C+ C+ +K +L H++RH
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 84 GEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVH 138
G S EC +C L H R HTGEKPY C C Y A + + HL+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKH 110
C CG + L H HTGEK Y+C +C Y A + L+ H +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 514 HMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
++ H+ H G KPYKC C Y + Q + L H+ H
Sbjct: 19 YLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
KPY C+ C ++SS L +H R+HTGEKPY C C FSQNS L H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHS 139
EK Y C C + + L +HQR HTGEKPY C C +S ++ H ++H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHT 551
+ C C +S + QH H G KPYKCL C +Q+S L H RIHT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
E+P+ C C F R L H + HTGE+ YKC C ++ L H RI
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHT 279
Y C C SS +++H R HTGE+P++C C F + L H + HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQV 398
Y C C + +H R HTGEKP+KC C + S+ L +H ++
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHT 111
C CG S + L +H HTGEK Y+C C + + L HQR HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTH 166
EKPY C C SS ++ H +VH+GEK + L H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLI 193
L H R H GEKPYKC C +Q + H I
Sbjct: 30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 525 IKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHDLP 582
+KP++C C ++S L H+R HTGEKP+AC +C KF+++ + K H +H LP
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP 58
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQ 313
+PFQC+IC F R L HI+ HTGE+ + C+ C AR D H I+H + I +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 314 N 314
+
Sbjct: 62 D 62
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKR 267
+QC C + S + HIR HTGE+PF C IC F R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLY 402
+ C C + + + HIRTHTGEKPF C C +R D H + H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 375 KPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALTKHDLDIK 434
KPF+C C + SR D L HI+ +H +K F C +C + + + H +H L I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 435 SDGI 438
D +
Sbjct: 61 EDKV 64
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRI 549
F C C + +S H+ HI H G KP+ C C K +S RH I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
K ++C C + + L H R HTGEKP++C C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 37
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKK-----HVLIICQHCDQSLFGTTQQLADHC 213
L TH+RTH GEKP+ C C + + + K+ H+L I + + L L +
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEV 78
Query: 214 RTCDKM 219
K+
Sbjct: 79 ARLKKL 84
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 KPYSCGHCPYTARSSSYMLTHLKVHSGEKAF 144
KP+ C C S ++ TH++ H+GEK F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 32
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQ 107
C IC S + L H HTGEK + C C K A ++ K+H+
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYK--CEFCDYTAARKDTLGVHVRI 305
R H+GE+P++C IC + F + T+ +HI + E K C CD ARK LGVH+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 306 KHKIS 310
+H S
Sbjct: 68 QHSYS 72
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 369 RTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYK-KRFQCPVCDYRCTKKYNLQMHALT 427
RTH+GEKP++C C ++ T+ HI H +F CP CD +K +L +H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 428 KHDLDIKSDG 437
+H S G
Sbjct: 68 QHSYSGPSSG 77
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
G R H+GEKPY C +C +F+Q+ +K H+ +H
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 164 RTHIGEKPYKCSSCDFQATQKIQVKKHVL---------IICQHCDQSLFGTTQQLADHCR 214
RTH GEKPY+C C + TQ +K H+L C HCD ++ L H R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCD-TVIARKSDLGVHLR 66
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRH-MRIHTGE-KPYACSLCDLKFSQNSQLKYHLTTRH 579
H G KPY+C C + TQS + H ++ HT + C CD ++ S L HL +H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 580 DLPDMST 586
S+
Sbjct: 70 SYSGPSS 76
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 228 YQCYSCEYHSLYSSRMIKHI-RNHTGE-RPFQCKICDSTFKRKQTLDLHIKR 277
Y+CY C S M HI + HT F C CD+ RK L +H+++
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
C ICG + L H L H+ + Y C +C + ++D+KKH HTGEKP+ C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 122 PYTARSSSYMLTHLKVHSG 140
SS ++TH + H+G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
F C C +S + H+ H +PY C +C + Q S + +H IHTGEKP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 560 LCDLKFSQNSQLKYH 574
+C FSQ+S L H
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ C C SS + H+ H+ RP+ C+ C F +K + H HTGE+ +KC+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 288 FCDYTAARKDTLGVHVR 304
C ++ L H R
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTG 280
Y C C S M KH HTGE+P +C++C F + L H ++HTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%)
Query: 87 SYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFXX 146
S++C C + L H H+ +PY C +C S M H +H+GEK
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 147 XXXXXXXXXXXNLRTHMRTHIG 168
NL TH R H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 116 YSCGHCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEKPYKCS 175
+ C C + + SS + THL +HS + + +++ H H GEKP+KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 176 SCDFQATQKIQVKKH 190
C +Q + H
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTG 552
+ C C ++ M++H H G KP+KC C +QSS L H R HTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 330 CRICSGKERPDSST--------DKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
C+IC GK SST + Y C C + MKKH HTGEKP KC
Sbjct: 4 CKIC-GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 382 CRYSASRRDTLDHH 395
C + S+ L H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 158 NLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLI-------ICQHCDQSLFGTTQQLA 210
L TH+ H +PY C C + QK +KKH I CQ C ++ F + L
Sbjct: 16 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKA-FSQSSNLI 74
Query: 211 DHCR 214
H R
Sbjct: 75 THSR 78
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 501 VCFTCNYHTYKSGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYAC 558
VC C +S +++H H G KP++C C + + L H+RIHTG++PY C
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 559 SL--CDLKFSQNSQLKYHLTT 577
C+ KF+Q++ LK H+ T
Sbjct: 96 PFDGCNKKFAQSTNLKSHILT 116
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSC 118
C CG + +LKRH L HTGEK ++C + C + + + +L+ H R HTG++PY C
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 119 GH--CPYTARSSSYMLTHLKVHSGEK 142
C S+ + +H+ H+ K
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 230 CYSCEYHSLYSSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCE 287
C C + SS++ +H HTGE+PFQC C F L H++ HTG+R Y C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 288 F--CDYTAARKDTLGVHV 303
F C+ A+ L H+
Sbjct: 97 FDGCNKKFAQSTNLKSHI 114
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 93 CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFXXXXXX-- 150
CT + ++KH H G + + C C SS + H VH+GEK F
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 151 XXXXXXXNLRTHMRTHIGEKPYKC--SSCDFQATQKIQVKKHVL 192
NLRTH+R H G++PY C C+ + Q +K H+L
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 515 MRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQNSQLK 572
MR+H++ H G + + C C +SS L RH +HTGEKP+ C+ C +FS + L+
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 573 YHL 575
H+
Sbjct: 82 THV 84
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRF 406
+VC C +K+H HTGEKPF+CT C S L H+++ H + +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPY 93
Query: 407 QCPV--CDYRCTKKYNLQMHALT 427
CP C+ + + NL+ H LT
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILT 116
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAARKD 297
+S M KH+ H G R C C F L H HTGE+ ++C F C +
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF 78
Query: 298 TLGVHVRI 305
L HVRI
Sbjct: 79 NLRTHVRI 86
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
++ C C H S ++ H R HT ERP+ C IC F+R+ L H H+ E+ +KC
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 287 EFCDYTAARKDTLGVH 302
+ C + TL VH
Sbjct: 77 QECGKGFCQSRTLAVH 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
F+C C H KS ++ H H +PY C C + L H IH+ EKP+ C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 560 LCDLKFSQNSQLKYHLT 576
C F Q+ L H T
Sbjct: 78 ECGKGFCQSRTLAVHKT 94
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI--KHKIS 310
++ F CK C F + L +H + HT ER Y C+ C R+D L H I K K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 311 ICQNCG 316
CQ CG
Sbjct: 75 KCQECG 80
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAF 144
+K + C +C +L H+R HT E+PY+C C R ++ H +HS EK F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 54 GRAQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGE 113
+ + + C CG + ++ L H HT E+ Y C C ++ L+ H+ H+ E
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 114 KPYSCGHCPYTARSSSYMLTHLKVH 138
KP+ C C S + H +H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
K + C C T+S L H R HT E+PY C +C F + L+ H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 338 RPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
R S T K F +C C H + H RTHT E+P+ C C + R+D L H
Sbjct: 9 RLPSKTKKEF--ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Query: 398 VSHLYKKRFQCPVC 411
+ H +K F+C C
Sbjct: 67 I-HSKEKPFKCQEC 79
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
+ C C+ + H+R H H KP+KC C QS L H +H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER----TYKCEFCDYTAARKDTLGVHV 303
R HTGE+P+ C CD TF++KQ LD+H KR+ + C C T R++T+ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 20/37 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHD 580
G R HTGEKPYACS CD F Q L H HD
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 369 RTHTGEKPFKCTHCRYSASRRDTLDHHIQVSH---LYKKRFQCPVCDYRCTKKYNLQMHA 425
RTHTGEKP+ C+HC + ++ LD H + H F C C T++ + HA
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 108 RKHTGEKPYSCGHCPYTARSSSYMLTHLK 136
R HTGEKPY+C HC T R + H K
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 164 RTHIGEKPYKCSSCDFQATQKIQVKKH-----------VLIICQHCDQSLF--GTTQQLA 210
RTH GEKPY CS CD QK + H +C C ++ T + A
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 211 DHCRTCDKM 219
D+C D +
Sbjct: 68 DNCAGPDGV 76
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 276 KRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKIS------ICQNCG 316
+ HTGE+ Y C CD T +K L +H + H + +C CG
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG 54
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 243 MIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGE--RTYKCEFCDYTAARKDTLG 300
+ +H +H+GE+P+ C +C FKRK + H++ H G + Y C+ C +R D L
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82
Query: 301 VHVRIKH 307
H++ H
Sbjct: 83 GHIKQVH 89
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGE--KPYSC 118
C ICG + + L RH L H+GEK Y C C + ++ + H R H G KPY C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 119 GHCPYTARSSSYMLTHLK-VHSGEKA 143
C ++ H+K VHSG +
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKH--- 307
+G C+IC F+ L+ H H+GE+ Y C C RKD + HVR
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 308 -KISICQNCG 316
K ICQ+CG
Sbjct: 63 GKPYICQSCG 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGE-- 553
GS C C H+ +H H G KPY C C + + + H+R H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 554 KPYACSLCDLKFSQNSQLKYHLTTRHDLP 582
KPY C C FS+ L H+ H P
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGE--RPFQCKICDSTFKRKQTLDLHIKR-HTGERT 283
Y C C RM H+R+H G +P+ C+ C F R L+ HIK+ H+G +
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGE--KPFKCTHCRYSASRRDTLDHHIQVSH 400
Y C C ++ M H+R+H G KP+ C C SR D L+ HI+ H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHV---------LIICQHCDQSLFGTTQQL 209
L H +H GEKPY C C + +K ++ HV ICQ C + F L
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKG-FSRPDHL 81
Query: 210 ADHCRTCDKMP 220
H + P
Sbjct: 82 NGHIKQVHSGP 92
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 364 MKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
+ +H +H+GEKP+ C C R+D + +H++
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGE- 169
+G +C C R ++ H HSGEK + + H+R+H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 170 -KPYKCSSCDFQATQKIQVKKHV 191
KPY C SC ++ + H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 224 RSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHT 279
R Y SC+ S + +HIR HTG++PFQC+IC F R L HI+ HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 525 IKPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
++PY C C + ++S L RH+RIHTG+KP+ C +C FS++ L H+ T
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 254 RPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVR 304
RP+ C + CD F R L HI+ HTG++ ++C C +R D L H+R
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 353 TCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
+CD + + +HIR HTG+KPF+C C + SR D L HI+
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 93 CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHS 139
C + + ++L +H R HTG+KP+ C C S ++ TH++ H+
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 504 TCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHT 551
+C+ +S + +HI H G KP++C C ++S L H+R HT
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHT 111
C S + L RH HTG+K ++C C + + L H R HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLT 576
+H++ H+G++PY C C K L HM+IHTG KPY C++C +F H+T
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT 86
Query: 577 T 577
+
Sbjct: 87 S 87
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
D+ Y QC H S+ +H+ H G RP+ C +C FK K L H+K HTG +
Sbjct: 8 DKLYPCQCGKSFTHK---SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 283 TYKCEFCDYTAARKDTLGVHV 303
Y+C C +D+ HV
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 83 TGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+G+K Y C C +++ +H H G +PY CG C + +++ H+K+H+G K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 143 AF 144
+
Sbjct: 65 PY 66
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 54 GRAQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGE 113
G + +K C CG + + RH H G + Y C C K ++ L H + HTG
Sbjct: 4 GSSGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 114 KPYSCGHC 121
KPY C C
Sbjct: 64 KPYECNIC 71
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+G++ + C+ C +F K D H+ H G R Y C C K L H++I
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHI 396
Y C C ++ + H++ HTG KP++C C RD+ H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
Y+C C+ Y + H HTGE+P++C IC + F R L H + H+GE+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+K Y+C C Y+ +L H+ HTGEKPY C C + + TH ++HSGEK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
KPYKC C L H +HTGEKPY C++C +F++ + LK H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEKP 171
+KPY C C + R + +H VH+GEK + NL+TH R H GEKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
++P++C C ++F+ K L H HTGE+ Y+C C R L H RI
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
+ C C G++ H H G KPY+C C + + + L H RIH+GEKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
L H HTGEK Y C C + +LK H R H+GEKP
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 158 NLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLI 193
NL +H H GEKPY+C+ C Q + +K H I
Sbjct: 32 NLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 374 EKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
+KP+KC C+ S + L H V H +K ++C +C + + NL+ H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLKTH 64
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQV 398
Y C C + + H HTGEKP++C C +R L H ++
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSG 140
+ Y+C C ++ +DL KH+R HTGEKPY C C S+++ H +VH+G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
YKC C + SS L +H R HTGEKPY C C F Q S L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTG 280
+Y+C C +SS + KH R HTGE+P++C C F ++ L H + HTG
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 26/57 (45%)
Query: 499 RFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
R+ C C S + +H H G KPYKC C Q S L H R+HTG P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
R ++C C +F L H + HTGE+ YKC+ C ++ L H R+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%)
Query: 55 RAQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
R + + C CG S + L +H HTGEK Y+C C + L H R HTG
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Query: 115 PYS 117
P S
Sbjct: 74 PSS 76
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQV 398
Y C C + KH RTHTGEKP+KC C + +R L H +V
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 158 NLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+L H RTH GEKPYKC C Q+ + H
Sbjct: 33 DLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 243 MIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCE 287
++ H+R HTGE+P +C C ++ R + L H++ HTGE+ Y CE
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 515 MRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHM-RIHTGEKPYACSL--CDLKFSQNS 569
++ H+ H G KPY C H CS + +S +H R H+ EKPY C L C +++ S
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 570 QLKYHLTTRH 579
L+ H+ T H
Sbjct: 145 SLRKHVKTVH 154
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 29/121 (23%)
Query: 78 HFLKHTGEKSYECCWCTYKTAYE--NDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHL 135
H +HTGEK ++C + + +Y +LK H R HTGEKPY C H
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH--------------- 102
Query: 136 KVHSGEKAFXXXXXXXXXXXXXNLRTHMRTHIGEKPYKC--SSCDFQATQKIQVKKHVLI 193
KAF + RTH EKPY C C + T ++KHV
Sbjct: 103 --EGCSKAF--------SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Query: 194 I 194
+
Sbjct: 153 V 153
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 362 ECMKKHIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQC--PVCDYRCTK 417
E +K H+R+HTGEKP+ C H C + S H +H +K + C P C R T
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142
Query: 418 KYNLQMHALTKH 429
+L+ H T H
Sbjct: 143 PSSLRKHVKTVH 154
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 518 HINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYAC--SLCDLKFSQNSQLKY 573
H+ H G KP+KC C ++ L H+R HTGEKPY C C FS S
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 574 HLTTRH 579
H H
Sbjct: 118 HQNRTH 123
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 122 PYTARSSSYMLT-HLKVHSGEKAFXXXXX--XXXXXXXXNLRTHMRTHIGEKPYKC 174
P+ A+ YML H++ H+GEK NL+TH+R+H GEKPY C
Sbjct: 48 PFKAQ---YMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 367 HIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQC 408
H+R HTGEKP KCT CR S SR + L H++ SH +K + C
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMC 100
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 75 LKRHFLKHTGEKSYEC--CWCTYKTAYENDLKKHQ-RKHTGEKPYSC 118
LK H HTGEK Y C C+ + +D KHQ R H+ EKPY C
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 265 FKRKQTLDLHIKRHTGERTYKCEF--CDYTAARKDTLGVHVR 304
FK + L +H++RHTGE+ +KC F C + +R + L H+R
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 37/126 (29%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDK 218
L HMR H GEKP+KC+ F+ +K + + L H R+
Sbjct: 55 LVVHMRRHTGEKPHKCT---FEGCRKS-----------------YSRLENLKTHLRS-HT 93
Query: 219 MPRPDRSYQYQCYSCEYH------SLYSSRMIKHIRNHTGERPFQCKI--CDSTFKRKQT 270
+P Y CE+ S S R R H+ E+P+ CK+ C + +
Sbjct: 94 GEKP--------YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSS 145
Query: 271 LDLHIK 276
L H+K
Sbjct: 146 LRKHVK 151
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 499 RFVC--FTCNYHTYKSGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEK 554
R++C C K+ ++ H++ H G KP+ C C T L RH HTGEK
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 555 PYACSL--CDLKFSQNSQLKYHLTTRHDL 581
+ C CDL+F+ + +K H H++
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 242 RMIKHIRNHTGERPFQCK--ICDSTFKRKQTLDLHIKRHTGERTYKC--EFCDYTAARKD 297
++ H+ HTGE+PF CK C+ F L H HTGE+ + C + CD K
Sbjct: 20 KLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 79
Query: 298 TLGVHVRIKHKI 309
+ H H I
Sbjct: 80 NMKKHFNRFHNI 91
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 30/110 (27%)
Query: 86 KSYECCWCTYKTAYEND--LKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
K Y C + AY + L+ H KHTGEKP+ C K EK
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPC-----------------KEEGCEKG 44
Query: 144 FXXXXXXXXXXXXXNLRTHMRTHIGEKPYKCSS--CDFQATQKIQVKKHV 191
F +L H TH GEK + C S CD + T K +KKH
Sbjct: 45 FTSLH---------HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 85
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECC--WCTYKTAYENDLKKHQRKHTGEKPYSC 118
CG + W+L+ H KHTGEK + C C + L +H HTGEK ++C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 364 MKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHI---QVSHLYKKRFQCPV--CDYRCTKK 418
++ H+ HTGEKPF C + T HH+ ++H +K F C CD R T K
Sbjct: 21 LQAHLSKHTGEKPFPCK--EEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK 78
Query: 419 YNLQMHALTKHDL 431
N++ H H++
Sbjct: 79 ANMKKHFNRFHNI 91
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 242 RMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKC--EFCDYTAARKD 297
++ H+ HTGE+PF CK C+ F L H HTGE+ + C + CD K
Sbjct: 29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 88
Query: 298 TLGVHVRIKHKISIC------QNCG 316
+ H H I IC +NCG
Sbjct: 89 NMKKHFNRFHNIKICVYVCHFENCG 113
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 499 RFVC--FTCNYHTYKSGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEK 554
R++C C K+ ++ H+ H G KP+ C C T L RH HTGEK
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 555 PYACSL--CDLKFSQNSQLKYHLTTRHDL 581
+ C CDL+F+ + +K H H++
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 10/136 (7%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECC--WCTYKTAYENDLKKHQRKHTGEKPYSCGH-- 120
CG + W+L+ H KHTGEK + C C + L +H HTGEK ++C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 121 CPYTARSSSYMLTHLKVHSGEK----AFXXXXXXXXXXXXXNLRTHMRTHIGEKPYKC-- 174
C + + M H K L+ H +H + PY+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 175 SSCDFQATQKIQVKKH 190
CD + + ++K+H
Sbjct: 140 EGCDKRFSLPSRLKRH 155
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 364 MKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHI---QVSHLYKKRFQCPV--CDYRCTKK 418
++ H+ HTGEKPF C + T HH+ ++H +K F C CD R T K
Sbjct: 30 LQAHLCKHTGEKPFPCK--EEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK 87
Query: 419 YNLQMHALTKHDLDI 433
N++ H H++ I
Sbjct: 88 ANMKKHFNRFHNIKI 102
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 348 NYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSH 400
++VC C +E +K+H R+HT EKP+ C C + +RRD L H Q H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 87 SYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHL-KVHSG 140
S+ C CT A + LK+H R HT EKPY CG C ++ H K+HSG
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 256 FQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISI 311
F C++C F R++ L H + HT E+ Y C C+ R+D L H + H ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHD 580
+ C C+ + L RH R HT EKPY C LC+ F++ L H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRH-MRIHTG 552
FVC C + H+++H H KPY C C+ T+ L RH +IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKR-HTG 280
+ C C + +H R+HT E+P+ C +C+ F R+ L H ++ H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKH-QRKHTG 112
C +C + LKRH+ HT EK Y C C + L +H Q+ H+G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLII 194
L+ H R+H EKPY C C+ T++ + +H I
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKI 53
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C +Q+S L RH RIHTGEKP S
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y+C C + + L +HQR HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
C +C L+RHF H+ EK Y C +C KH+ HTGE+ Y C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 121 CPYTARSSSYMLTHLK-VHSGEKA 143
C + + +M +H+K VHS + +
Sbjct: 84 CGKSFINYQFMSSHIKSVHSQDPS 107
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%)
Query: 495 DGSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
DG ++C C +R+H N H K Y C +C + +H HTGE+
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 555 PYACSLCDLKFSQNSQLKYHLTTRH 579
Y C C F + H+ + H
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVH 102
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
Y C C+ + + + +H H+ E+ + C+ C+ F + H HTGER Y+C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 288 FCDYTAARKDTLGVHVRIKH 307
C + + H++ H
Sbjct: 83 ACGKSFINYQFMSSHIKSVH 102
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 343 TDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLY 402
D Y+C C +++H H+ EK + C +C + H ++ H
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTG 75
Query: 403 KKRFQCPVCDYRCTKKYNLQMHALTKHDLDIKSDG 437
++R+QC C + H + H D D
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDS 110
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C +Q+S L RH R+HTGEKP S
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
K Y+C C + + L +HQR HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
Y+C C +KKHIRTHT +P+ CT+C +S + L H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIK 276
+Y C C S + KHIR HT RP+ C C+ +FK K L H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTR 578
Y C C + + S L +H+R HT +PY C+ C+ F L H+ ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 499 RFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMR 548
+++C C K +++HI H ++PY C +C++ L +HM+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 88 YECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLK 136
Y C C + + LKKH R HT +PY C +C ++ ++ + H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 256 FQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIK 306
+ C+ C K+ L HI+ HT R Y C +C+++ K L H++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHV 191
L+ H+RTH +PY C+ C+F K + KH+
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+G G KP C C QSSCL +H RIH+GEKP S
Sbjct: 3 SGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGPS 42
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+G+KP C C T R SS + H ++HSGEK
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+G++P C C TF++ L H + H+GE+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C TQ+S L H RIHTGEKP S
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
EKPY C C +S++ H ++H+GEK
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP+KC C + TQ+S L H R+HTGEKP S
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK ++C C + + L HQR HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 553 EKPYACSLCDLKFSQNSQLKYH 574
EKP+ C C +F+QNSQL H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSH 31
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+PF+C+ C F + L H + HTGE+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C TQ+S L RH IHTGEKP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGE 553
+G G KPY C C TQSSCL H R+HTGE
Sbjct: 3 SGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 249 NHTGERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+GE+P+ C+ C F + L +H + HTGE
Sbjct: 4 GSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C TQ+S L RH IHTGEKP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 525 IKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
+KPY C+HC + L RH+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C TQ+S L RH R+HTG KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C TQ+S L RH IHTGEKP S
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
EKPY C C +S+++ H +H+GEK
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 85 EKSYECCWC--TYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ + C +C TY+ A + L +H+R H G +P SC C R S + HLKVH +
Sbjct: 2 ERPFFCNFCGKTYRDA--SGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
Query: 143 A 143
A
Sbjct: 60 A 60
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHDLP 582
+P+ C C +S L RH R H G +P +C C F S++ HL + P
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
ERPF C C T++ L H + H G R C C + + H+++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
+S + +H R H G RP C C F+ + ++ H+K H
Sbjct: 17 ASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQNS 569
S +R HI H G C +SS L H R HTGEKP++CS C+ +F+++
Sbjct: 12 SSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 570 QLKYHLTT 577
+L H T
Sbjct: 64 ELSRHRRT 71
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 238 LYSSRMIKHIRNHTGERPFQC--KICDSTFKRKQTLDLHIKRH 278
SS + H R HTGE+PF C K C+ F R L H + H
Sbjct: 30 FKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 238 LYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAAR 295
+ SSR+ HI +H G C T+ + L H + HTGE+ + C + C+ AR
Sbjct: 10 IDSSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 296 KDTLGVHVRI 305
D L H R
Sbjct: 62 SDELSRHRRT 71
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 75 LKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKH 110
LK H HTGEK + C W C + A ++L +H+R H
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 364 MKKHIRTHTGEKPFKCT--HCRYSASRRDTLDHH 395
+K H RTHTGEKPF C+ C +R D L H
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 505 CNYHTYKSGHMRQHINGHVGIKPYKCL--HCSYKSTQSSCLGRHMRIH 550
C +KS H++ H H G KP+ C C + +S L RH R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 74 RLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
R++ H H G C +K+++ LK H R HTGEKP+SC
Sbjct: 14 RIRSHICSHPG-----CGKTYFKSSH---LKAHTRTHTGEKPFSC 50
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 159 LRTHMRTHIGEKPYKCS--SCDFQATQKIQVKKH 190
L+ H RTH GEKP+ CS C+ + + ++ +H
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C TQ+S L H RIHTG KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP++C C + TQ+S L H R+HTGEKP S
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+PFQC+ C F + L H + HTGE+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK ++C C + + L HQR HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C +S L RH RIHTGEKP S
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
EKPY C C R +SY+ H ++H+GEK
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y+C C + + L +HQR HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C Q + L +H RIHTGEKP S
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y C C A + +L +HQR HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C C F +K L H + HTGE+
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKPY CG C + + H ++H+GEK
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 19/34 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY C C Q S L RH RIHTGEKP S
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y C C ++ L +H+R HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
R TG +PFQC CD +F R L LH KRH
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
T E+PF+C CD +F+++ L+ H HTGE+
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP++C C Q S L H IHTGEKP S
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPS 44
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 551 TGEKPYACSLCDLKFSQNSQLKYH 574
T EKP+ C CD F Q S L H
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH 31
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+GEKPY C C S SY++ H ++H+GEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+GE+P+ C C F K L +H + HTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
+G G KPY C C + S L H RIHTGEK
Sbjct: 3 SGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
KPYKC CSY S + L H+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEK 114
K Y+C C+Y +A + +L H RKHTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+P++C C K L++H+++HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 340 DSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEK 375
SS Y C C Y + ++ + H+R HTGEK
Sbjct: 1 GSSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 249 NHTGERPFQCKICDSTFKRKQTLDLHIKRHTG 280
+GE+P+QCK C +F ++ +L +H + HTG
Sbjct: 4 GSSGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
+G G KPY+C C +Q L H R+HTG P
Sbjct: 3 SGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 83 TGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYS 117
+GEK Y+C C + L H+R HTG P S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 551 TGEKPYACSLCDLKFSQNSQLKYH 574
+GEKPY C C FSQ L H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVH 29
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP++C C + SS L H RIHTGEKP S
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK +EC C + + L HQR HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKP+ C C + SS + TH ++H+GEK
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+PF+C C +F L H + HTGE+
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+G G+KPY C C S L HMR HTGEKP S
Sbjct: 3 SGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPS 42
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+G KPY C C RS SY++ H++ H+GEK
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 249 NHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+G +P+ C C F+ K L +H++ HTGE+
Sbjct: 4 GSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
K +KC C TQSS L H RIHTGEKP S
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP+KC C Q+ L H+RIHTGEKP S
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+PF+CK C F++ L H++ HTGE+
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKP+ C C R + ++ +HL++H+GEK
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++CK+C F +K L H K HTGE+
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C CS TQ + L +H + HTGEKP S
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK YEC C+ + L +HQ+ HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY C C +SCL +H R+H+GEKP S
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKPY+C C + R +S +L H +VHSGEK
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y C C + + L KHQR H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C +Q++ L +H R+HTGEKP S
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK YEC C + L +HQR HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
EKPY C C +++++ H +VH+GEK
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++CK C F + L H + HTGE+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 249 NHTGERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+GE+P+ C +C FKRK + H++ H G
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 551 TGEKPYACSLCDLKFSQNSQLKYHLTTRHD 580
+GEKPY+C +C L+F + ++ YH+ + HD
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRS-HD 34
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKPY C C S SY++ H++ HSGEK
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P+ C C F K L +H++ H+GE+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY C C + S L HMR H+GEKP S
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C T S L H +IHTGEKP S
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKPY C C S + TH K+H+GEK
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y C C ++L HQ+ HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C C F + L H K HTGE+
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+PF+C C F R+ L++H K HTGE+
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP+KC+ C ++ S L H ++HTGEKP S
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRH 278
TG +PFQC CD +F R L LH KRH
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY C C +Q S L H R HTGEKP S
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P+ C C TF +K L H + HTGE+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y C C + ++ L HQR HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKPY C C T S + H + H+GEK
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C+ C + K LD+H K HTGER
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C L H ++HTGE+P S
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C IC +F +K L +H + HTGE+
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C T+ S L H +IHTGEKP S
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK YEC C ++ L HQ+ HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 553 EKPYACSLCDLKFSQNSQLKYH 574
EKPY CS+C F++ SQL H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH 31
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C C F RK L +H + HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHT---GERTYKCEFCDYTAARKDTLGVHVRIKH 307
+G QC+IC T ++K +L+ H ++H + CEFC + D++ H H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY C +C S+ L RH RIHTGEKP S
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y C +C +L +HQR HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+P+KC C QS+ L +H RIHTGEKP S
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 252 GERPFQCKICDSTFKRKQTLDLH-IKRHT-GERTYKCEFCDYTAARKDTLGVHVRIKHKI 309
GE ++CK+C + H + H + Y C FC RKD + HV+I HKI
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C ++S L RH IHTGEKP S
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
EKPY C C R +S++ H +H+GEK
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY C C S L H RIHTGEKP S
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y C C +++ L++HQR HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERT 283
E+P++C+ C + R+ LD+H + H GE+T
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP+KC C Q L +H R+HTGEKP S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
EKP+ CG C + ++ H +VH+GEK
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP+ C+ C + L +H RIHTGEKP S
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK ++C C + L +H+R HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
+KP+ C HC + R+ ++TH ++H+GEK+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKS 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERT 283
++PF+C C +F+ K L H + HTGE++
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKS 40
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
KP++C HC L H RIHTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTG 280
E+P+ C+IC + F+ QTL H++ HTG
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C +C F +Q+L +H + H+G++
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK YEC C ++ L HQR H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C + L H RIH+G+KP S
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C C +KR+ LD H + HTGE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
KPYKC+ C + L H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 527 PYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
P KC C + T S L RH+RIH+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+PF+C C F K L +H + HTGE+
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK +EC C +++L HQR HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP++C C S L H R HTGEKP S
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
EKP+ C C + S ++ H + H+GEK
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+PFQCK C F R L H + HTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
KP++C C K ++S L H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 256 FQCKICDSTFKRKQTLDLHIKRHTGER 282
F+C C F RK TL +H K HTGE+
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
++C C T+ S L H +IHTGEKP S
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 83 TGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
+GEK YEC C ++ L HQR HTGE S G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 249 NHTGERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+GE+P++C C F K L +H + HTGE
Sbjct: 4 GSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
YKC C + +QSS L H R+HTGEKP S
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y+C C + + + L+ HQR HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMR-IHTGEKPYACS 559
KPY+C+ C Q++ L RH R HTGEKP S
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 83 TGEKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
+GEK +EC C ++ + L HQR HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+GE P++C C F RK L H + H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 83 TGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
+GE YEC C ++ L HQR H GE S G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC+ C +S +H R+HTG++P S
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+PY C C T S L +H +IHTGEKP S
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
ERP+ C +C F + L H K HTGE+
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
E+ Y C C ++L KHQ+ HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
E+ YEC C A ++ L HQR HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
ER ++C C F RK TL +H + HTGE+
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
Y+C C + S L H RIHTGEKP S
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKR-HTGERTYKCEF 288
+P+ C+ C F R L+ HIK+ HT ER +KC+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK YEC C ++ L +HQR H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C + + L +H R+H+GEKP S
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C +C F +L H + H+GE+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
K YKC C +++S L +H +IHTGEKP S
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y+C C + + L +HQ+ HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 54 GRAQNKNTCCICGHVESGAWRLKRHFLKHTGEKSY 88
GR + + C ICG + + L RH L H+GEK Y
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E PF C C F K L +H K HTGER
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C S L H RIHTGEKP S
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C +C +F+ +L +H + HTGE+
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK Y+C C Y + L HQR HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHT 279
+G+RPF C+IC S F K H+K HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHV 191
LR H R H ++P+KC+ C F Q + KH+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 515 MRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGE 553
+R H H +P+KC +CS+ + Q S L +HM+ G+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 114 KPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
KPY C C RS SY++ H + H+GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESG 40
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+P+ C C F+ K L +H + HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTG 280
E+P++C C F +K +L +HI+ HTG
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
KPY+C C +Q L H+R+HTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 249 NHTGERPFQCKICDSTFKRKQTLDLHIKRHTG 280
+G+R ++C+ C +F++K +L LH + HTG
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 83 TGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
+GEK +EC C ++++ L HQR HTGE S G
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGESGPSSG 42
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C C +F K L +H K HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C + S L H RIHTGE P S
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C C +F +K L +H + HTGE
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK YEC C ++ L HQR HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
E+P++C C F K L +H + HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
EK YEC C +++L HQR HTGE S G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
EKPY C C + S ++ H + H+GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESG 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+P QC +C F + +L H+++HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
KP +C+ C TQ+S L H+R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 525 IKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+KPY C C + S L H IHTGEKP S
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C S L H IHTGEKP S
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKPY C C R+ S + TH +H+GEK
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+GEKPYSC C S ++ H VH+G K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
+G G KPY C C T S L H +HTG KP
Sbjct: 3 SGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKP 115
EK + C W C ++ + ++L +H+R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C C F+ + +L +H H+GE+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKPY C C R+ S + H HSGEK
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C S L H H+GEKP S
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVH 138
EKP+SC CP +R S M HL+ H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+RP++C C FK K +L H + HTGE+
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+PY+C+ C S L H R HTGEKP S
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 387 SRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALTKHDLDIKSD 436
S R L+HH + H+++K F CP + C K +N + H K + + SD
Sbjct: 20 SNRQYLNHHKKYQHIHQKSFSCP--EPACGKSFNFKKH--LKEHMKLHSD 65
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
Y C C +++ CL +H R+H+GEKP S
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 251 TGERPFQCKI--CDSTFKRKQTLDLHIKRH 278
TG +PFQC CD +F R L LH KRH
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
EKPY C C R SS+++ H VHSGE+
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+P++C++C F+ L H H+GER
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C SS L +H +H+GE+P S
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 282 RTYKCEFCDYTAARKDTLGVHVRIKH 307
+TY+C++C+Y +A L H++ KH
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKH 26
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERT 283
ERPF+C C F R+ L H++ H+ E++
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKS 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
Y+C C Q S L H RIH GEKP S
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
E+ YEC C ++ L HQR H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK +EC C ++ + L HQR HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KP++C C + +S L H RIHTGE P S
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 525 IKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
K ++C C T S L +H RIHTGEKP S
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
KS++C C ++ L +HQR HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 249 NHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+GE+PF C C+ F K L +H + H E+
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+GEKP+ C C S SY+L H + H+ EK
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 551 TGEKPYACSLCDLKFSQNSQLKYHLTT 577
+GEKP+ CS C+ FS S L H T
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQT 32
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+G++P+ C C F K L +H + HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+PF+C +C+ + K L H+ RH+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 114 KPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
KP+ C C Y RS S + H+ HS EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C + S L H IHTG+KP S
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
EK YEC C + + L HQ HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
KPYKC C + Q + L H+ IHTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 169 EKPYKCSSCDFQATQKIQVKKHVLI 193
EKPYKC +C + Q ++ HVLI
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLI 33
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 551 TGEKPYACSLCDLKFSQNSQLKYH 574
+GEKPY+C+ C FS N++L H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQH 29
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHS 139
+GEKPYSC C T ++ ++ H K+H+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
+GEKPY C C S+ +TH ++H+GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESG 38
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+GE+P+ C C F RK H + HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
T EKPY C C R+ S + TH +H+GEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
E+P++C C F R L +H + H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 553 EKPYACSLCDLKFSQNSQLKYHLTT 577
EKPY CS C F +NSQL H T
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRT 34
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 85 EKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
EK YEC C + L HQR H+GE S G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERT 283
++P++CK C TF + L+ H + HTGER+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERS 40
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY+C C Q L +H R+HTGE+ S
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 282 RTYKCEFCDYTAARKDTLGVHVRIKH 307
+TY+C++C++ +A L H++ KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 101 NDLKKHQRKHTGEKPYSCGH--CPYTARSSSYMLTHLKVHSG 140
N LK HQ HT + PY C H C S + H KVH+G
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPYKC C + + L H RIHTG +P S
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGERT 283
ERP+ C C F R L H+KRH E++
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKS 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 101 NDLKKHQRKHTGEKPYSCGH--CPYTARSSSYMLTHLKVHSG 140
N LK HQ HT + PY C H C S + H KVH+G
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
KPY C C T S L +H +IHT +KP S
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 551 TGEKPYACSLCDLKFSQNSQLKYH 574
+GEKPY CS C F+ SQL H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVH 29
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E+PF+C IC +F + L+ H HT E+
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
E P++C C F RK L H + H GE+
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
K +KC C +Q+S L H +H GEKP S
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEKP 115
K Y C C + ++ L HQR HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+ F C+ C+ FK K +L H++ HT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTG 280
RP+ C +C F K ++ H + HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,827,866
Number of Sequences: 62578
Number of extensions: 708200
Number of successful extensions: 4334
Number of sequences better than 100.0: 184
Number of HSP's better than 100.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2262
Number of HSP's gapped (non-prelim): 1852
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)