RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7449
(596 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 127 bits (321), Expect = 4e-34
Identities = 71/231 (30%), Positives = 94/231 (40%), Gaps = 56/231 (24%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTH 134
GEK Y C C + + L +HQR HTGEKPY C C + + H
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 135 LKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLII 194
+ H+GEK +KC C S ++NLR H RTH GEKPY
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA--------------------- 107
Query: 195 CQHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGER 254
C C +S F + + H R HTGE+
Sbjct: 108 CPECGKS-FS----------------------------------QLAHLRAHQRTHTGEK 132
Query: 255 PFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
P++C C +F R+ L H + HTGE+ YKC C + +R+D L VH R
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 115 bits (291), Expect = 5e-30
Identities = 74/278 (26%), Positives = 98/278 (35%), Gaps = 99/278 (35%)
Query: 102 DLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRT 161
GEKPY+C C + S ++ H + H+GEK +KC C S K +L
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67
Query: 162 HMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPR 221
H RTH GEKPYK C C +S F
Sbjct: 68 HQRTHTGEKPYK---------------------CPECGKS-FS----------------- 88
Query: 222 PDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+ + H R HTGE+P+ C C +F + L H + HTGE
Sbjct: 89 -----------------QRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 282 RTYKCEFCDYTAARKDTLGVHVRIKH---KISICQNCGLILSTITEELLEHCRICSGKER 338
+ YKC C + +R+D L H R H K C CG
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKCPECG---------------------- 168
Query: 339 PDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKP 376
KSF+ R+ + H RTHTG+K
Sbjct: 169 ------KSFSR-----------RDALNVHQRTHTGKKT 189
Score = 91.0 bits (227), Expect = 2e-21
Identities = 44/111 (39%), Positives = 54/111 (48%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
C CG S L+ H HTGEK Y C C + L+ HQR HTGEKPY C
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 121 CPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKP 171
C + + TH + H+GEK +KC C S + L H RTH G+K
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 87.1 bits (217), Expect = 5e-20
Identities = 64/188 (34%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
SS + GE+P+ C C +F R L H + HTGE+ YKC C + + K L
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 300 GVHVRIKH---KISICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDY 356
H R H K C CG S L H R +G E+P Y C C
Sbjct: 66 TRHQRT-HTGEKPYKCPECGKSFSQRA-NLRAHQRTHTG-EKP---------YACPECGK 113
Query: 357 HTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCT 416
++ H RTHTGEKP+KC C S SR D L H Q +H +K ++CP C +
Sbjct: 114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFS 172
Query: 417 KKYNLQMH 424
++ L +H
Sbjct: 173 RRDALNVH 180
Score = 69.8 bits (172), Expect = 5e-14
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
+ +H H G KPYKC C +Q + L H R HTGEKPYAC C FSQ + L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 572 KYH 574
+ H
Sbjct: 122 RAH 124
Score = 69.8 bits (172), Expect = 5e-14
Identities = 29/63 (46%), Positives = 34/63 (53%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
S H+ +H H G KPYKC C + L RH R HTGEKPY C C FSQ + L
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL 93
Query: 572 KYH 574
+ H
Sbjct: 94 RAH 96
Score = 69.8 bits (172), Expect = 5e-14
Identities = 26/63 (41%), Positives = 31/63 (49%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
++R H H G KPY C C +Q + L H R HTGEKPY C C FS+ L
Sbjct: 90 RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL 149
Query: 572 KYH 574
H
Sbjct: 150 HTH 152
Score = 69.4 bits (171), Expect = 8e-14
Identities = 27/63 (42%), Positives = 31/63 (49%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
H+R H H G KPYKC C ++ L H R HTGEKPY C C FS+ L
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Query: 572 KYH 574
H
Sbjct: 178 NVH 180
Score = 69.0 bits (170), Expect = 8e-14
Identities = 24/63 (38%), Positives = 26/63 (41%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
S G KPY C C ++S L H R HTGEKPY C C FS L
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 572 KYH 574
H
Sbjct: 66 TRH 68
Score = 56.7 bits (138), Expect = 2e-09
Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 44/164 (26%)
Query: 264 TFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKH---KISICQNCGLILS 320
+ + GE+ Y C C + +R D L H R H K C CG
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECG---- 56
Query: 321 TITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
KSF+ ++ + +H RTHTGEKP+KC
Sbjct: 57 ------------------------KSFSD-----------KKDLTRHQRTHTGEKPYKCP 81
Query: 381 HCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
C S S+R L H Q +H +K + CP C ++ +L+ H
Sbjct: 82 ECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 54.8 bits (133), Expect = 8e-09
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 538 TQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
SS + GEKPYAC C FS++ L H
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
Score = 49.7 bits (120), Expect = 3e-07
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 511 KSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
+ ++ H H G KPYKC C ++ L H R HTG+K
Sbjct: 145 REDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 106 bits (268), Expect = 4e-28
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGE 141
++C C + ++ LK H R HTG KPY C C Y A SS + HL++HS E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 142 KAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKC 174
+ FKC+ C Y+S + S L H+R+H G+
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 85.2 bits (212), Expect = 2e-20
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 110 HTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGE 169
P+ C C + TH++ H+G K +KC+ C Y++ S+L H+R H E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 170 KPYKCSSCDFQATQKIQVKKH 190
+P+KC C + + Q+ H
Sbjct: 63 RPFKCQICPYASRNSSQLTVH 83
Score = 82.1 bits (204), Expect = 2e-19
Identities = 38/149 (25%), Positives = 51/149 (34%), Gaps = 56/149 (37%)
Query: 138 HSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQH 197
KCE C K L+THMR H G KPYK
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK------------------------ 38
Query: 198 CDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQ 257
C+TCD + SS + KH+R H+ ERPF+
Sbjct: 39 ---------------CKTCDY-----------AAAD------SSSLNKHLRIHSDERPFK 66
Query: 258 CKICDSTFKRKQTLDLHIKRHTGERTYKC 286
C+IC + L +H++ HTG+
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 73.2 bits (181), Expect = 3e-16
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
++ H+ H G+KPYKC C Y + SS L +H+RIH+ E+P+ C +C +SQL
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL 80
Query: 572 KYH 574
H
Sbjct: 81 TVH 83
Score = 71.3 bits (176), Expect = 1e-15
Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 37/130 (28%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKI 309
P +C++C F RK L H++ HTG + YKC+ CDY AA +L H+RI
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI---- 58
Query: 310 SICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIR 369
H S ERP + C C Y + + H+R
Sbjct: 59 -------------------H----SD-ERP---------FKCQICPYASRNSSQLTVHLR 85
Query: 370 THTGEKPFKC 379
+HTG+
Sbjct: 86 SHTGDSGPSS 95
Score = 68.6 bits (169), Expect = 1e-14
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
P+KC C ++ L HMR HTG KPY C CD + +S L H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 67.8 bits (167), Expect = 3e-14
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
++C C ++ H+R HTG +P++CK CD +L+ H++ H+ ER +KC+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 288 FCDYTAARKDTLGVHVRI 305
C Y + L VH+R
Sbjct: 69 ICPYASRNSSQLTVHLRS 86
Score = 60.9 bits (149), Expect = 6e-12
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 502 CFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYAC 558
C TC+Y S + +H+ H +P+KC C Y S SS L H+R HTG+ +
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 53.6 bits (130), Expect = 3e-09
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
L +H H+ E+ ++C C Y + + L H R HTG+ S G
Sbjct: 52 LNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 47.8 bits (115), Expect = 3e-07
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 365 KKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
K H+R HTG KP+KC C Y+A+ +L+ H H ++ F+C +C Y L +H
Sbjct: 25 KTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 42.4 bits (101), Expect = 2e-05
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 370 THTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
+ P KC C SR+D L H H K ++C CDY +L H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKH 55
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 106 bits (267), Expect = 9e-27
Identities = 53/239 (22%), Positives = 74/239 (30%), Gaps = 68/239 (28%)
Query: 82 HTGEKSYEC----CWCTYKTAYENDLKKHQRKHTGEKPYSC--GHCPYTARSSSYMLTHL 135
K Y C C Y L+ H KHTGEKP+ C C S ++ H
Sbjct: 7 PVVYKRYICSFADCGAAYNKN--WKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS 64
Query: 136 KVHSGEKAFKCE--YCSYSSYSKSNLRTHMRTHIGEK--PYKCSSCDFQATQKIQVKKHV 191
H+GEK F C+ C +K+N++ H K Y C
Sbjct: 65 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCH---------------- 108
Query: 192 LIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHT 251
++C ++ F QL H + HT
Sbjct: 109 ---FENCGKA-FKKHNQLKVHQFS----------------------------------HT 130
Query: 252 GERPFQCK--ICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHK 308
+ P++C CD F L H K H G K + C + HV H+
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 90.3 bits (225), Expect = 4e-21
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 75 LKRHFLKHTGEKSYEC--CWCTYKTAYENDLKKHQRKHTGEK--PYSC--GHCPYTARSS 128
L RH L HTGEK++ C C + + ++KKH + K Y C +C +
Sbjct: 60 LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKH 119
Query: 129 SYMLTHLKVHSGEKAFKC--EYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQ 186
+ + H H+ + ++C E C S L+ H + H G K SC F
Sbjct: 120 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 179
Query: 187 VKKHVLII 194
KHV
Sbjct: 180 YLKHVAEC 187
Score = 88.4 bits (220), Expect = 2e-20
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYEC--CWCTYKTAYENDLKKHQRKHTGEKPYSC--GH 120
CG + W+L+ H KHTGEK + C C + L +H HTGEK ++C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 121 CPYTARSSSYMLTHLKVHSGEKA--FKCEY--CSYSSYSKSNLRTHMRTHIGEKPYKCS 175
C + + M H K + C + C + + L+ H +H + PY+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Score = 81.9 bits (203), Expect = 3e-18
Identities = 51/304 (16%), Positives = 75/304 (24%), Gaps = 125/304 (41%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
+ K Y C A+ L+ H+
Sbjct: 2 GEKALPVVYKRYIC-----------------SFADCGAAYNK---------NWKLQAHLC 35
Query: 165 THIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDR 224
H GEKP+ C C+K
Sbjct: 36 KHTGEKPFPCKEEG-------------------------------------CEK------ 52
Query: 225 SYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCK--ICDSTFKRKQTLDLHIKRHTGER 282
++ +H + +H HTGE+ F C CD F K + H R +
Sbjct: 53 -----GFTSLHH------LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 101
Query: 283 T--YKCEF--CDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHC--RICSGK 336
Y C F C + + L VH H T++L C C
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFS-H---------------TQQLPYECPHEGC--- 142
Query: 337 ERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHI 396
DK F+ +K+H + H G K C + H+
Sbjct: 143 -------DKRFSL-----------PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 184
Query: 397 QVSH 400
H
Sbjct: 185 AECH 188
Score = 72.6 bits (179), Expect = 6e-15
Identities = 40/207 (19%), Positives = 63/207 (30%), Gaps = 40/207 (19%)
Query: 244 IKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCE--FCDYTAARKDTL 299
+ + + C C + + + L H+ +HTGE+ + C+ C+ L
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 300 GVHVRIKH---KISIC--QNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTC 354
H H K C C L +T + +H K YVC+
Sbjct: 61 TRHSLT-HTGEKNFTCDSDGCDLRFTTKAN-MKKHFNRFHN--------IKICVYVCH-- 108
Query: 355 DYHTGVRECMK---------KHIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYK 403
C K H +HT + P++C H C S L H + H
Sbjct: 109 -----FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGY 162
Query: 404 KRFQCPVCDYRCTKKY-NLQMHALTKH 429
+ C K + H H
Sbjct: 163 PCKKDDSCS-FVGKTWTLYLKHVAECH 188
Score = 64.5 bits (158), Expect = 4e-12
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 511 KSGHMRQHINGHVGIKPYKC--LHCSYKSTQSSCLGRHMRIHTGEKPYACS--LCDLKFS 566
K+ ++ H+ H G KP+ C C T L RH HTGEK + C CDL+F+
Sbjct: 26 KNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT 85
Query: 567 QNSQLKYHLTTRHDLPDMS-TCLSIECG 593
+ +K H H++ C CG
Sbjct: 86 TKANMKKHFNRFHNIKICVYVCHFENCG 113
Score = 58.0 bits (141), Expect = 5e-10
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 512 SGHMRQHINGHVGIK--PYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACS--LCDLKF 565
+M++H N IK Y C +C + + L H HT + PY C CD +F
Sbjct: 87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 146
Query: 566 SQNSQLKYH 574
S S+LK H
Sbjct: 147 SLPSRLKRH 155
Score = 58.0 bits (141), Expect = 6e-10
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 517 QHINGHVGIKPYKC--LHCSYKSTQSSCLGRHMRIHTGEKPYACS--LCDLKFSQNSQLK 572
V K Y C C ++ L H+ HTGEKP+ C C+ F+ L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 573 YH 574
H
Sbjct: 62 RH 63
Score = 56.1 bits (136), Expect = 3e-09
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 511 KSGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQN 568
K ++ H H PY+C H C + + S L RH ++H G C
Sbjct: 118 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Query: 569 SQLKYHLTTRH 579
+ H+ H
Sbjct: 178 TLYLKHVAECH 188
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 102 bits (257), Expect = 3e-26
Identities = 42/112 (37%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTH---LKVH 138
+G EC C K + LK H RKHTGEKP+ C C +L H ++
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 139 SGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
E+ F C C + + LR HM +H GE PYKCSSC Q QK ++ H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 83.7 bits (208), Expect = 1e-19
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRK---HTGEKPYS 117
C C + LK H KHTGEK +EC C + +L +H+ + + E+ ++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 118 CGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHM-RTHIGEK 170
C C T R + H+ H+GE +KC CS K +L++HM + H G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 83.7 bits (208), Expect = 2e-19
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 26/147 (17%)
Query: 138 HSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQH 197
SG +C C SK L+ H R H GEKP++C C +K + +H C +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 198 CDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQ 257
++ + C C+ + H+ +HTGE P++
Sbjct: 62 -----------------RSEQ--------VFTCSVCQETFRRRMELRLHMVSHTGEMPYK 96
Query: 258 CKICDSTFKRKQTLDLHIKR-HTGERT 283
C C F +K+ L H+ + H+G +
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 71.0 bits (175), Expect = 4e-15
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 34/146 (23%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKI 309
+G +C C F K L +H ++HTGE+ ++C C RK+ L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN--- 58
Query: 310 SICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIR 369
+ E+ + C C R ++ H+
Sbjct: 59 ---------------------CMNRS-EQV---------FTCSVCQETFRRRMELRLHMV 87
Query: 370 THTGEKPFKCTHCRYSASRRDTLDHH 395
+HTGE P+KC+ C ++ L H
Sbjct: 88 SHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 69.8 bits (172), Expect = 1e-14
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 502 CFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLC 561
C+ + + H ++ + + + C C + L HM HTGE PY CS C
Sbjct: 44 CYFRKENLLE--HEARNCM-NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Query: 562 DLKFSQNSQLKYH 574
+F Q L+ H
Sbjct: 101 SQQFMQKKDLQSH 113
Score = 69.8 bits (172), Expect = 1e-14
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 521 GHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G G +C C K L H R HTGEKP+ C C + + L H
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 45.2 bits (108), Expect = 4e-06
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHH--IQVSHLYKKRF 406
C TC + +K H R HTGEKPF+C C R++ L H + ++ F
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 407 QCPVCDYRCTKKYNLQMH 424
C VC ++ L++H
Sbjct: 68 TCSVCQETFRRRMELRLH 85
Score = 44.8 bits (107), Expect = 6e-06
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 511 KSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHM-RIHTGEK 554
+ +R H+ H G PYKC CS + Q L HM ++H+G
Sbjct: 78 RRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 98.7 bits (247), Expect = 4e-25
Identities = 28/102 (27%), Positives = 41/102 (40%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTH 134
L +K + C +C +L H+R HT E+PY+C C R ++ H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 135 LKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+HS EK FKC+ C L H H+ +S
Sbjct: 65 RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 87.1 bits (217), Expect = 6e-21
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 102 DLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRT 161
+ +K + C C S +L H + H+ E+ + C+ C + + +LR
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 162 HMRTHIGEKPYKCSSC 177
H H EKP+KC C
Sbjct: 64 HRYIHSKEKPFKCQEC 79
Score = 71.7 bits (177), Expect = 1e-15
Identities = 31/144 (21%), Positives = 39/144 (27%), Gaps = 43/144 (29%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
SS ++ F CK C F + L +H + HT ER Y C+ C R+D L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 300 GVHVRIKH---KISICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDY 356
H I H K CQ CG K F
Sbjct: 62 RDHRYI-HSKEKPFKCQECG----------------------------KGFCQ------- 85
Query: 357 HTGVRECMKKHIRTHTGEKPFKCT 380
+ H H
Sbjct: 86 ----SRTLAVHKTLHMQTSSPTAA 105
Score = 68.6 bits (169), Expect = 2e-14
Identities = 19/63 (30%), Positives = 25/63 (39%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
S K + C C T+S L H R HT E+PY C +C F + L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 572 KYH 574
+ H
Sbjct: 62 RDH 64
Score = 67.5 bits (166), Expect = 5e-14
Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 32/133 (24%)
Query: 156 KSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCR- 214
S +K + C C +H F + L H R
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCG----------RH------------FTKSYNLLIHERT 39
Query: 215 -TCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDL 273
T ++ P Y C C + H H+ E+PF+C+ C F + +TL +
Sbjct: 40 HTDER---P-----YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV 91
Query: 274 HIKRHTGERTYKC 286
H H +
Sbjct: 92 HKTLHMQTSSPTA 104
Score = 66.3 bits (163), Expect = 1e-13
Identities = 21/64 (32%), Positives = 28/64 (43%)
Query: 511 KSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQ 570
KS ++ H H +PY C C + L H IH+ EKP+ C C F Q+
Sbjct: 29 KSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRT 88
Query: 571 LKYH 574
L H
Sbjct: 89 LAVH 92
Score = 57.1 bits (139), Expect = 2e-10
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
H+R H H KP+KC C QS L H +H +
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 40.5 bits (96), Expect = 1e-04
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
H RTHT E+P+ C C + R+D L H + H +K F+C C + L +H
Sbjct: 35 IHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVH 92
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 91.1 bits (227), Expect = 8e-22
Identities = 43/132 (32%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 75 LKRHFLK---HTGEKSYECCWCTYKTAYEN-----DLKKHQRKHTGEKPYSCGH--CPYT 124
L H H K + C W L H R+HTGEKP+ C C +
Sbjct: 19 LVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKS 78
Query: 125 ARSSSYMLTHLKVHSGEKAFKCEY--CSYSSYSKSNLRTHM-RTHIGEKPYKCSS--CDF 179
+ THL+ H+GEK + CE+ CS + + S+ H RTH EKPY C C
Sbjct: 79 YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK 138
Query: 180 QATQKIQVKKHV 191
+ T ++KHV
Sbjct: 139 RYTDPSSLRKHV 150
Score = 71.9 bits (177), Expect = 5e-15
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 75 LKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGH--CPYTARSSSY 130
L H +HTGEK ++C + C + +LK H R HTGEKPY C H C ++S
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114
Query: 131 MLTHLK-VHSGEKAFKCEY--CSYSSYSKSNLRTHMRTHIG 168
H HS EK + C+ C+ S+LR H++T G
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 66.8 bits (164), Expect = 3e-13
Identities = 44/249 (17%), Positives = 68/249 (27%), Gaps = 110/249 (44%)
Query: 141 EKAFKCEYCSYSSYSKSNLRTHM---RTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQH 197
E + + CS S+ L H+ H K + C
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------------------- 41
Query: 198 CDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQ 257
C + + +Y ++ H+R HTGE+P +
Sbjct: 42 ---------------CSRELR-----------PFKAQYM------LVVHMRRHTGEKPHK 69
Query: 258 CKI--CDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAARKDTLGVHVRIKHKISICQ 313
C C ++ R + L H++ HTGE+ Y CE C + H
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH----------- 118
Query: 314 NCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMK-------- 365
R S E+P Y C + C K
Sbjct: 119 ---------------QNRTHSN-EKP------------YVCK----LPGCTKRYTDPSSL 146
Query: 366 -KHIRTHTG 373
KH++T G
Sbjct: 147 RKHVKTVHG 155
Score = 63.8 bits (156), Expect = 3e-12
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 500 FVCFTCNYHTYK-----SGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTG 552
FVC + H+ H G KP+KC C ++ L H+R HTG
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 553 EKPYAC--SLCDLKFSQNSQLKYHLTTRH 579
EKPY C C FS S H H
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 61.5 bits (150), Expect = 2e-11
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 502 CFTCNYHTYKSGHMRQHING---HVGIKPYKCLHCSYKS-----TQSSCLGRHMRIHTGE 553
C+ + HIN H K + C L HMR HTGE
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 554 KPYACSL--CDLKFSQNSQLKYH 574
KP+ C+ C +S+ LK H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTH 88
Score = 58.8 bits (143), Expect = 2e-10
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 512 SGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHM-RIHTGEKPYACSL--CDLKFS 566
+++ H+ H G KPY C H CS + +S +H R H+ EKPY C L C +++
Sbjct: 82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT 141
Query: 567 QNSQLKYHLTT 577
S L+ H+ T
Sbjct: 142 DPSSLRKHVKT 152
Score = 57.6 bits (140), Expect = 5e-10
Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 52/184 (28%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRN---HTGERPFQCKICDST-----FKRKQTLDLHIKRHT 279
+ C +++ HI + H + F C + FK + L +H++RHT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 280 GERTYKCEF--CDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKE 337
GE+ +KC F C + +R + L H+R H +G E
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRS-----------------------H----TG-E 95
Query: 338 RPDSSTDKSFNYVC--YTCDYHTGVRECMKKHI-RTHTGEKPFKCTH--CRYSASRRDTL 392
+P Y+C C KH RTH+ EKP+ C C + +L
Sbjct: 96 KP---------YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 393 DHHI 396
H+
Sbjct: 147 RKHV 150
Score = 52.2 bits (126), Expect = 3e-08
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 8/57 (14%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHM---RIHTGEKPYACSLCDLK-----FSQNSQLKYH 574
+ CS + L H+ IH K + C F L H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Score = 44.9 bits (107), Expect = 1e-05
Identities = 37/182 (20%), Positives = 52/182 (28%), Gaps = 69/182 (37%)
Query: 253 ERPFQCKICDSTFKRKQTLDLHIKR---HTGERTYKCEFCDYTAARKDTLGVHVRIKHKI 309
E + C F ++ L HI H + +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFV------------------------ 36
Query: 310 SICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIR 369
C G C + F + + H+R
Sbjct: 37 --CHWGG-------------CSREL----------RPFKA-----------QYMLVVHMR 60
Query: 370 THTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALT 427
HTGEKP KCT CR S SR + L H SH +K + C C+K ++
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEG--CSKAFS-NASDRA 116
Query: 428 KH 429
KH
Sbjct: 117 KH 118
Score = 38.3 bits (90), Expect = 0.002
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 512 SGHMRQHING-HVGIKPYKC--LHCSYKSTQSSCLGRHMRIHTG 552
+ +H N H KPY C C+ + T S L +H++ G
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 33.7 bits (78), Expect = 0.063
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 553 EKPYACSLCDLKFSQNSQLKYHLTTRH 579
E C +F QL +H+ + H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 90.0 bits (224), Expect = 2e-21
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 65 CGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYT 124
G + + S C + ++L H P H Y
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 125 A---------RSSSYMLTHLKVHSGEKAFKCEY--CSYSSYSKSNLRTHMRTHIGEKPYK 173
++ ++ H++VH+GEK F C + C NL+ H RTH GEKP+K
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 174 CSS--CDFQATQKIQVKKH 190
C CD + KKH
Sbjct: 123 CEFEGCDRRFANSSDRKKH 141
Score = 86.6 bits (215), Expect = 3e-20
Identities = 33/128 (25%), Positives = 44/128 (34%), Gaps = 13/128 (10%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKT---------AYENDLKKHQRKHT 111
C S L H + Y + L H R HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 112 GEKPYSCGH--CPYTARSSSYMLTHLKVHSGEKAFKCEY--CSYSSYSKSNLRTHMRTHI 167
GEKP+ C C S + H + H+GEK FKCE+ C + S+ + HM H
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 168 GEKPYKCS 175
+K S
Sbjct: 147 SDKSGPSS 154
Score = 85.8 bits (213), Expect = 7e-20
Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 51/191 (26%)
Query: 119 GHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCD 178
G + + L+ + + + + C + + L TH+ P + +
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 179 FQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSL 238
+ C K + +Y
Sbjct: 61 YWEE------------------------------CPREGK-----------SFKAKYK-- 77
Query: 239 YSSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAA 294
++ HIR HTGE+PF C C F R + L +H + HTGE+ +KCEF CD A
Sbjct: 78 ----LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFA 133
Query: 295 RKDTLGVHVRI 305
H+ +
Sbjct: 134 NSSDRKKHMHV 144
Score = 66.2 bits (162), Expect = 4e-13
Identities = 35/171 (20%), Positives = 54/171 (31%), Gaps = 60/171 (35%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQ---------CKICDSTFKRKQTLDLHIKRH 278
SC+ ++ H+ P Q C +FK K L HI+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 279 TGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKER 338
TGE+ + C F CG I + +E L H R +G E+
Sbjct: 86 TGEKPFPCPFPG------------------------CGKIFAR-SENLKIHKRTHTG-EK 119
Query: 339 PDSSTDKSFNYVCYTCDYHTGVRECMK---------KHIRTHTGEKPFKCT 380
P + C++ C + KH+ HT +K +
Sbjct: 120 P------------FKCEFE----GCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 65.0 bits (159), Expect = 1e-12
Identities = 36/192 (18%), Positives = 51/192 (26%), Gaps = 62/192 (32%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
+ + + K CD TF L H+ + Y
Sbjct: 10 IKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE----- 64
Query: 300 GVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTG 359
C G KSF Y
Sbjct: 65 ------------CPREG----------------------------KSFK-----AKYK-- 77
Query: 360 VRECMKKHIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTK 417
+ HIR HTGEKPF C C +R + L H + +H +K F+C C +
Sbjct: 78 ----LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEG--CDR 130
Query: 418 KYNLQMHALTKH 429
++ KH
Sbjct: 131 RFA-NSSDRKKH 141
Score = 62.7 bits (153), Expect = 8e-12
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKS---------TQSSCLGRH 546
+C+ + H+ P + H Y L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 547 MRIHTGEKPYACSL--CDLKFSQNSQLKYHLTT 577
+R+HTGEKP+ C C F+++ LK H T
Sbjct: 82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 61.9 bits (151), Expect = 1e-11
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 512 SGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQ 567
+ HI H G KP+ C C +S L H R HTGEKP+ C CD +F+
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134
Query: 568 NSQLKYH 574
+S K H
Sbjct: 135 SSDRKKH 141
Score = 54.6 bits (132), Expect = 5e-09
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 512 SGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACS 559
S +++ H H G KP+KC C + SS +HM +HT +K S
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 54.2 bits (131), Expect = 5e-09
Identities = 8/62 (12%), Positives = 12/62 (19%), Gaps = 9/62 (14%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYA---------CSLCDLKFSQNSQLK 572
C + L H+ + P C F +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 573 YH 574
H
Sbjct: 80 NH 81
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 86.8 bits (216), Expect = 3e-21
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 108 RKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHI 167
+ P C C Y+ S + + H ++H ++ FKC YCS+ + SNL HM+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 168 GEKPYKCS 175
G+ S
Sbjct: 62 GDMSGPSS 69
Score = 75.6 bits (187), Expect = 2e-17
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
P KC CSY + + L H RIH ++P+ C+ C Q S L H+
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 73.7 bits (182), Expect = 1e-16
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 137 VHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
S KC CSYS SK+ LR H R H ++P+KC+ C F Q + KH
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 68.7 bits (169), Expect = 6e-15
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+ + P +C C + K L +H + H +R +KC +C + + L H++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 63.7 bits (156), Expect = 3e-13
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 502 CFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
C C+Y +R H H +P+KC +CS+ + Q S L +HM+ G+ S
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 61.0 bits (149), Expect = 4e-12
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+C C Y + + H R H +RPF+C C K+ L H+K+ G+ +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 55.2 bits (134), Expect = 4e-10
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
C C Y + ++ H R H ++PFKC +C + + L H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 54.4 bits (132), Expect = 7e-10
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 369 RTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
+ + P KC+ C YS S + L H + H + F+C C + + NL H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 52.9 bits (128), Expect = 3e-09
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
C C + S L+ H H ++ ++C +C++ T ++L KH +K G+
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 47.5 bits (114), Expect = 2e-07
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 37/103 (35%)
Query: 278 HTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKE 337
+ KC C Y+ + K L +H RI HC +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERI-----------------------HC-----TD 35
Query: 338 RPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
RP + C C + T + KH++ G+ +
Sbjct: 36 RP---------FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 43.6 bits (104), Expect = 5e-06
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 28/95 (29%)
Query: 164 RTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPD 223
+ P KCS C + + K ++ H I H D+ P
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI---H-----------------CTDR-P--- 37
Query: 224 RSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C + + S + KH++ G+
Sbjct: 38 ----FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 39.8 bits (94), Expect = 9e-05
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 548 RIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
+ P CS C S + L+ H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI 31
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 85.7 bits (213), Expect = 1e-20
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 103 LKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGE----KAFKCEYCSYSSYSKSN 158
R HTGEKPY+C HC T R + H K + AF C C + ++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 159 LRTHMRTHIGEKPYKCSSC 177
+ H G + +
Sbjct: 63 MARHADNCAGPDGVEGENS 81
Score = 64.9 bits (159), Expect = 2e-13
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 513 GHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGE----KPYACSLCDLKFSQN 568
G H G KPY C HC Q L H + + + CS C F++
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 569 SQLKYH 574
+ + H
Sbjct: 61 NTMARH 66
Score = 62.2 bits (152), Expect = 2e-12
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 244 IKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERT----YKCEFCDYTAARKDTL 299
R HTGE+P+ C CD TF++KQ LD+H KR+ + C C T R++T+
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 300 GVHVRIKH---KISICQNCG 316
H +N G
Sbjct: 64 ARHADN-CAGPDGVEGENSG 82
Score = 60.6 bits (148), Expect = 7e-12
Identities = 7/48 (14%), Positives = 16/48 (33%)
Query: 514 HMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLC 561
H +++ + + + C C T+ + + RH G
Sbjct: 34 HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 57.9 bits (141), Expect = 6e-11
Identities = 27/136 (19%), Positives = 36/136 (26%), Gaps = 60/136 (44%)
Query: 158 NLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCD 217
+ + RTH GEKPY CS HCD++ F Q L H +
Sbjct: 2 SSGSSGRTHTGEKPYACS---------------------HCDKT-FRQKQLLDMHFKR-- 37
Query: 218 KMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGE----RPFQCKICDSTFKRKQTLDL 273
+ F C C TF R+ T+
Sbjct: 38 --------------------------------YHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 274 HIKRHTGERTYKCEFC 289
H G + E
Sbjct: 66 HADNCAGPDGVEGENS 81
Score = 49.1 bits (118), Expect = 8e-08
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 75 LKRHFLKHTGE----KSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
L HF ++ ++ C C N + +H G +
Sbjct: 31 LDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 47.1 bits (113), Expect = 4e-07
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQV---SHLYKKRFQCPVCDYRCTKKYNLQ 422
RTHTGEKP+ C+HC + ++ LD H + + F C C T++ +
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 423 MH 424
H
Sbjct: 65 RH 66
Score = 37.1 bits (87), Expect = 0.001
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 326 LLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGE----KPFKCTH 381
R +G E+P Y C CD ++ + H + + F C+
Sbjct: 3 SGSSGRTHTG-EKP---------YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK 52
Query: 382 CRYSASRRDTLDHHIQVSHLYKKRFQCPVC 411
C + +RR+T+ H + +
Sbjct: 53 CGKTFTRRNTMARH-ADNCAGPDGVEGENS 81
Score = 26.3 bits (59), Expect = 8.7
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 512 SGHMRQHINGHVGIKPYKCLHC 533
M +H + G + +
Sbjct: 60 RNTMARHADNCAGPDGVEGENS 81
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 85.6 bits (213), Expect = 3e-20
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH--CPYTARSSSYML 132
+++H H G + + C C + LK+HQ HTGEKP+ C C +
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 133 THLKVHSGEKAFKCEY--CSYSSYSKSNLRTHMRTHIGEKPYK 173
TH+++H+G++ + C + C+ +NL++H+ TH K +
Sbjct: 82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 79.5 bits (197), Expect = 5e-18
Identities = 38/177 (21%), Positives = 54/177 (30%), Gaps = 59/177 (33%)
Query: 113 EKPYSCGH--CPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
+ +C H C R +S M HL H G + C C + S L+ H H GEK
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 171 PYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQC 230
P++C+ C + F L H R
Sbjct: 62 PFQCTFEG-------------------CGKR-FSLDFNLRTHVRI--------------- 86
Query: 231 YSCEYHSLYSSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYK 285
HTG+RP+ C C+ F + L HI H + +
Sbjct: 87 -------------------HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 69.1 bits (170), Expect = 2e-14
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQNS 569
+ MR+H++ H G + + C C +SS L RH +HTGEKP+ C+ C +FS +
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF 78
Query: 570 QLKYH 574
L+ H
Sbjct: 79 NLRTH 83
Score = 67.5 bits (166), Expect = 7e-14
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 512 SGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQ 567
S +++H H G KP++C C + + L H+RIHTG++PY C C+ KF+Q
Sbjct: 47 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106
Query: 568 NSQLKYH 574
++ LK H
Sbjct: 107 STNLKSH 113
Score = 57.5 bits (140), Expect = 2e-10
Identities = 37/149 (24%), Positives = 46/149 (30%), Gaps = 52/149 (34%)
Query: 239 YSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDT 298
+S M KH+ H G R C C F L H HTGE+ ++C F
Sbjct: 19 DNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-------- 69
Query: 299 LGVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHT 358
CG S L H RI +G +RP Y C +
Sbjct: 70 ----------------CGKRFSLDFN-LRTHVRIHTG-DRP------------YVCPFD- 98
Query: 359 GVRECMK---------KHIRTHTGEKPFK 378
C K HI TH K +
Sbjct: 99 ---GCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 55.6 bits (135), Expect = 9e-10
Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 31/143 (21%)
Query: 167 IGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSY 226
+ + C + C + F + H T
Sbjct: 1 MEPRTIACP-------------------HKGCTKM-FRDNSAMRKHLHTHGPRV------ 34
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTY 284
+ C C + SS++ +H HTGE+PFQC C F L H++ HTG+R Y
Sbjct: 35 -HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 285 KCEF--CDYTAARKDTLGVHVRI 305
C F C+ A+ L H+
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILT 116
Score = 55.6 bits (135), Expect = 1e-09
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 526 KPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
+ C H C+ +S + +H+ H G + + C+ C F ++S+LK H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH 53
Score = 54.4 bits (132), Expect = 3e-09
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 512 SGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPY 556
++R H+ H G +PY C C+ K QS+ L H+ H K
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 39.4 bits (93), Expect = 4e-04
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 365 KKHIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQ 422
K+H HTGEKPF+CT C S L H H + + CP C KK+ Q
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHTGDRPYVCPFDG--CNKKFA-Q 106
Query: 423 MHALTKH 429
L H
Sbjct: 107 STNLKSH 113
Score = 37.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 363 CMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQ 422
M+KH+ TH G + C C + L H Q+ H +K FQC C K+++L
Sbjct: 22 AMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEG--CGKRFSLD 77
Query: 423 MHALTKH 429
+ L H
Sbjct: 78 FN-LRTH 83
Score = 27.1 bits (61), Expect = 7.7
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 553 EKPYACSL--CDLKFSQNSQLKYHLTT 577
+ AC C F NS ++ HL T
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHT 29
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 84.5 bits (210), Expect = 8e-20
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 75 LKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYML 132
L+ H KHTGEK Y+C + C + + + LK+HQR+HTG KP+ C C S ++
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 133 THLKVHSGEKAFKCEY--CSYSSYSKSNLRTHMRTH 166
TH + H+GEK F C + C L H H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 73.3 bits (181), Expect = 6e-16
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQNS 569
S +++H H G+KP++C C K ++S L H R HTGEKP++C C KF+++
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Query: 570 QLKYH 574
+L H
Sbjct: 111 ELVRH 115
Score = 72.9 bits (180), Expect = 7e-16
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 111 TGEKPYSCGH--CPYTARSSSYMLTHLKVHSGEKAFKCEY--CSYSSYSKSNLRTHMRTH 166
+ ++P+ C + C S++ H + H+GEK ++C++ C L+ H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 167 IGEKPYKCSSCDFQATQKIQVKKH 190
G KP++C +C + ++ +K H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 72.6 bits (179), Expect = 9e-16
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 511 KSGHMRQHINGHVGIKPYKC--LHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQN 568
K H++ H H G KPY+C C + ++S L RH R HTG KP+ C C KFS++
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRS 79
Query: 569 SQLKYH 574
LK H
Sbjct: 80 DHLKTH 85
Score = 63.3 bits (155), Expect = 2e-12
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAARKD 297
S ++ +H R HTG +PFQCK C F R L H + HTGE+ + C + C AR D
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Query: 298 TLGVHVRI 305
L H +
Sbjct: 111 ELVRHHNM 118
Score = 62.2 bits (152), Expect = 5e-12
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 43/151 (28%)
Query: 251 TGERPFQCK--ICDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAARKDTLGVHVRIK 306
+ +RPF C C+ + + L +H ++HTGE+ Y+C+F C+ +R D L H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR- 60
Query: 307 HKISICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKK 366
H T C+ C + F+ + +K
Sbjct: 61 H---------------TGVKPFQCKTCQ----------RKFSRSDH-----------LKT 84
Query: 367 HIRTHTGEKPFKC--THCRYSASRRDTLDHH 395
H RTHTGEKPF C C+ +R D L H
Sbjct: 85 HTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 61.4 bits (150), Expect = 1e-11
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 526 KPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQNSQLKYH 574
+P+ C + C+ + + S L H R HTGEKPY C C+ +FS++ QLK H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
Score = 44.4 bits (106), Expect = 6e-06
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 365 KKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
K+H R HTG KPF+C C+ SR D L H + H +K F C C KK+ +
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPS--CQKKFA-RSD 110
Query: 425 ALTKH 429
L +H
Sbjct: 111 ELVRH 115
Score = 41.0 bits (97), Expect = 1e-04
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKC--LHCSYKSTQSSCLGRHMRIH 550
F C TC +S H++ H H G KP+ C C K +S L RH +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.1 bits (74), Expect = 0.13
Identities = 6/26 (23%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 551 TGEKPYACS--LCDLKFSQNSQLKYH 574
+ ++P+ C+ C+ ++ + S L+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH 27
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 82.1 bits (204), Expect = 2e-19
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 85 EKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
E+ Y C C + + L +H R HTG+KP+ C C S ++ TH++ H+GEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 143 AFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
F C+ C + H + H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 76.4 bits (189), Expect = 2e-17
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
SG + +HI H G KP++C C ++S L H+R HTGEKP+AC +C KF+++ +
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78
Query: 572 KYH 574
K H
Sbjct: 79 KRH 81
Score = 71.7 bits (177), Expect = 8e-16
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 113 EKPYSCG--HCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
E+PY+C C S + H+++H+G+K F+C C + +L TH+RTH GEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 171 PYKCSSCDFQATQKIQVKKH 190
P+ C C + + + K+H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 67.1 bits (165), Expect = 4e-14
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
S + +HIR HTG++PFQC+IC F R L HI+ HTGE+ + C+ C AR D
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78
Query: 300 GVHVRI 305
H +I
Sbjct: 79 KRHTKI 84
Score = 64.4 bits (158), Expect = 3e-13
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 526 KPYKCL--HCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
+PY C C + +QS L RH+RIHTG+KP+ C +C FS++ L H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 63.6 bits (156), Expect = 7e-13
Identities = 33/144 (22%), Positives = 46/144 (31%), Gaps = 58/144 (40%)
Query: 141 EKAFKC--EYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHC 198
E+ + C E C +L H+R H G+KP++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ------------------------- 36
Query: 199 DQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
CR C + +S S + HIR HTGE+PF C
Sbjct: 37 --------------CRICMR-----------NFSR------SDHLTTHIRTHTGEKPFAC 65
Query: 259 KICDSTFKRKQTLDLHIKRHTGER 282
IC F R H K H ++
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 54.4 bits (132), Expect = 1e-09
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
S H+ HI H G KP+ C C K +S RH +IH +K
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.2 bits (121), Expect = 3e-08
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 365 KKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
+HIR HTG+KPF+C C + SR D L HI+ H +K F C +C + + + H
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 45.5 bits (109), Expect = 2e-06
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 39/125 (31%)
Query: 253 ERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKIS 310
ERP+ C + CD F + +L HI+ HTG++ ++C C +R D L H+R H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-H--- 57
Query: 311 ICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRT 370
T E C IC + F K+H +
Sbjct: 58 ------------TGEKPFACDICG----------RKFARSDE-----------RKRHTKI 84
Query: 371 HTGEK 375
H +K
Sbjct: 85 HLRQK 89
Score = 42.5 bits (101), Expect = 2e-05
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
C IC S + L H HTGEK + C C K A ++ K+H + H +K
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 28.2 bits (64), Expect = 1.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 553 EKPYACSL--CDLKFSQNSQLKYH 574
E+PYAC + CD +FSQ+ L H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH 25
Score = 27.0 bits (61), Expect = 4.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 374 EKPFKC--THCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
E+P+ C C S+ +L HI++ H +K FQC +C ++ +L H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTH 53
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 80.6 bits (200), Expect = 5e-19
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 103 LKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTH 162
H +KPY C C + R + +H VH+GEK ++C C +NL+TH
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 163 MRTHIGEKPY 172
R H GEKPY
Sbjct: 65 TRIHSGEKPY 74
Score = 70.9 bits (175), Expect = 1e-15
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
H H + KPYKC C L H +HTGEKPY C++C +F++ + L
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 572 KYH 574
K H
Sbjct: 62 KTH 64
Score = 63.2 bits (155), Expect = 6e-13
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 128 SSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQV 187
+ H + +K +KC+ C S K NL +H H GEKPY+C+ C Q + +
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 188 KKH 190
K H
Sbjct: 62 KTH 64
Score = 61.7 bits (151), Expect = 2e-12
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
H ++P++C C ++F+ K L H HTGE+ Y+C C R L
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 300 GVHVRI 305
H RI
Sbjct: 62 KTHTRI 67
Score = 55.2 bits (134), Expect = 4e-10
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPY 556
G++ H H G KPY+C C + + + L H RIH+GEKPY
Sbjct: 30 KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 54.4 bits (132), Expect = 9e-10
Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 56/128 (43%)
Query: 157 SNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTC 216
+ H +KPYK C C
Sbjct: 3 HHHHHHSHMTHSDKPYK---------------------------------------CDRC 23
Query: 217 DKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIK 276
+ Y + H HTGE+P++C IC + F R L H +
Sbjct: 24 QA-----------SFR------YKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Query: 277 RHTGERTY 284
H+GE+ Y
Sbjct: 67 IHSGEKPY 74
Score = 45.9 bits (110), Expect = 8e-07
Identities = 22/55 (40%), Positives = 25/55 (45%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPY 116
C C L H HTGEK Y C C + +LK H R H+GEKPY
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 37.4 bits (88), Expect = 7e-04
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 326 LLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYS 385
H + ++P Y C C + + H HTGEKP++C C
Sbjct: 5 HHHHSHMTHS-DKP---------YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQ 54
Query: 386 ASRRDTLDHH 395
+R L H
Sbjct: 55 FNRPANLKTH 64
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 79.5 bits (197), Expect = 1e-18
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 103 LKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGE--KAFKCEYCSYSSYSKSNLR 160
R H+GEKPY C C S M H+ E F C +C KS+L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 161 THMRT-HIGEKPY 172
H+R H P
Sbjct: 63 VHLRKQHSYSGPS 75
Score = 76.4 bits (189), Expect = 1e-17
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 513 GHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGE--KPYACSLCDLKFSQNSQ 570
G H G KPY+C C + TQS + H+ E + C CD ++ S
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 571 LKYHLTTRH 579
L HL +H
Sbjct: 61 LGVHLRKQH 69
Score = 70.2 bits (173), Expect = 2e-15
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERT--YKCEFCDYTAARKDTLGVH 302
R H+GE+P++C IC + F + T+ +HI + E + C CD ARK LGVH
Sbjct: 5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Query: 303 VRIKH 307
+R +H
Sbjct: 65 LRKQH 69
Score = 60.2 bits (147), Expect = 8e-12
Identities = 26/130 (20%), Positives = 35/130 (26%), Gaps = 59/130 (45%)
Query: 158 NLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTCD 217
+ + RTH GEKPY+C C TQ
Sbjct: 2 SSGSSGRTHSGEKPYECY---------------------ICHARF---TQ---------- 27
Query: 218 KMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGE--RPFQCKICDSTFKRKQTLDLHI 275
S M HI E F C CD+ RK L +H+
Sbjct: 28 ----------------------SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 276 KR-HTGERTY 284
++ H+
Sbjct: 66 RKQHSYSGPS 75
Score = 59.8 bits (146), Expect = 9e-12
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 365 KKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHL-YKKRFQCPVCDYRCTKKYNLQM 423
RTH+GEKP++C C ++ T+ HI H +F CP CD +K +L +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 424 HALTKH 429
H +H
Sbjct: 64 HLRKQH 69
Score = 53.3 bits (129), Expect = 2e-09
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 512 SGHMRQHINGHVG--IKPYKCLHCSYKSTQSSCLGRHMR-IHTGEKPYA 557
SG M+ HI + + C HC + S LG H+R H+ P +
Sbjct: 28 SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 46.4 bits (111), Expect = 5e-07
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 326 LLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGE--KPFKCTHCR 383
R SG E+P Y CY C MK HI E F C HC
Sbjct: 3 SGSSGRTHSG-EKP---------YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCD 52
Query: 384 YSASRRDTLDHHIQVSHLYKK 404
+R+ L H++ H Y
Sbjct: 53 TVIARKSDLGVHLRKQHSYSG 73
Score = 44.4 bits (106), Expect = 3e-06
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGE--KSYECCWCTYKTAYENDLKKHQRK-HTGEKPYS 117
C IC + + +K H L+ E + C C A ++DL H RK H+ P S
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 39.4 bits (93), Expect = 2e-04
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 36/109 (33%)
Query: 270 TLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEH 329
+ + H+GE+ Y+C C + T+ +H+ KH
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH---------------------- 39
Query: 330 CRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRT-HTGEKPF 377
+ + C CD + + H+R H+ P
Sbjct: 40 ----TENVAK---------FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 77.5 bits (192), Expect = 6e-18
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 102 DLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRT 161
+ + + + Y C C + SS + H + H+GEK +KC+ C + +S+L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 162 HMRTHIGEKPYK 173
H R H G P
Sbjct: 65 HHRVHTGSGPSS 76
Score = 68.2 bits (168), Expect = 1e-14
Identities = 25/64 (39%), Positives = 29/64 (45%)
Query: 511 KSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQ 570
SG + + YKC C + SS L +H R HTGEKPY C C F Q S
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 571 LKYH 574
L H
Sbjct: 62 LIGH 65
Score = 60.1 bits (147), Expect = 8e-12
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
S + R ++C C +F L H + HTGE+ YKC+ C ++ L
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 300 GVHVRI 305
H R+
Sbjct: 63 IGHHRV 68
Score = 52.1 bits (126), Expect = 6e-09
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPY 556
S + +H H G KPYKC C Q S L H R+HTG P
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 48.6 bits (117), Expect = 1e-07
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYK 285
Y+C C +SS + KH R HTGE+P++C C F ++ L H + HTG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 39.0 bits (92), Expect = 2e-04
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 155 SKSNLRTHMRTHIGEKPYKCSSC 177
S + + YKC C
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDEC 24
Score = 37.8 bits (89), Expect = 7e-04
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
KH RTHTGEKP+KC C + +R L H
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 77.9 bits (193), Expect = 7e-18
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGE 141
+G C C L +H+ H+GEKPYSC C + M H++ H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 142 --KAFKCEYCSYSSYSKSNLRTHM-RTHIGEK 170
K + C+ C +L H+ + H G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 69.1 bits (170), Expect = 9e-15
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 521 GHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G G C C L RH H+GEKPY+C +C L+F + ++ YH
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 65.6 bits (161), Expect = 2e-13
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGE--KPYACSLCDLKFSQNS 569
H+ +H H G KPY C C + + + H+R H G KPY C C FS+
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79
Query: 570 QLKYHL 575
L H+
Sbjct: 80 HLNGHI 85
Score = 58.7 bits (143), Expect = 4e-11
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERT--YKCEFCDYTAARKD 297
+ +H +H+GE+P+ C +C FKRK + H++ H G Y C+ C +R D
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79
Query: 298 TLGVHVRIKH 307
L H++ H
Sbjct: 80 HLNGHIKQVH 89
Score = 57.9 bits (141), Expect = 8e-11
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGE--KPYSC 118
C ICG + + L RH L H+GEK Y C C + ++ + H R H G KPY C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 119 GHCPYTARSSSYMLTHLK-VHSGEKA 143
C ++ H+K VHSG +
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 57.9 bits (141), Expect = 9e-11
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI---- 305
+G C+IC F+ L+ H H+GE+ Y C C RKD + HVR
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 306 KHKISICQNCG 316
K ICQ+CG
Sbjct: 62 VGKPYICQSCG 72
Score = 54.8 bits (133), Expect = 1e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 138 HSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSC 177
SG CE C +L H +H GEKPY C C
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVC 41
Score = 42.1 bits (100), Expect = 2e-05
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHL--YKKRFQCPVCDYRCTKKYNLQM 423
+H +H+GEKP+ C C R+D + +H SH K + C C ++ +L
Sbjct: 25 RHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPYICQSCGKGFSRPDHLNG 83
Query: 424 H 424
H
Sbjct: 84 H 84
Score = 41.3 bits (98), Expect = 5e-05
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 512 SGHMRQHINGHVG--IKPYKCLHCSYKSTQSSCLGRHM-RIHTGEK 554
M H+ H G KPY C C ++ L H+ ++H+G
Sbjct: 48 KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 39.8 bits (94), Expect = 2e-04
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 371 HTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
+G C C L+ H ++SH +K + CPVC R +K + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 76.4 bits (189), Expect = 1e-17
Identities = 24/70 (34%), Positives = 31/70 (44%)
Query: 103 LKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTH 162
H+GEKPY C C SS ++ H +VH+GEK +KC C + S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 163 MRTHIGEKPY 172
R H
Sbjct: 62 QRIHTSGPSS 71
Score = 66.3 bits (163), Expect = 5e-14
Identities = 28/58 (48%), Positives = 33/58 (56%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
H G KPY C+ C ++SS L +H R+HTGEKPY C C FSQNS L H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 57.5 bits (140), Expect = 7e-11
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 244 IKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHV 303
H+GE+P+ C C F R L H + HTGE+ YKC C ++ L H
Sbjct: 3 SGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Query: 304 RI 305
RI
Sbjct: 63 RI 64
Score = 52.9 bits (128), Expect = 2e-09
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYA 557
S + QH H G KPYKCL C +Q+S L H RIHT
Sbjct: 27 SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 50.2 bits (121), Expect = 2e-08
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTY 284
Y C C SS +++H R HTGE+P++C C F + L H + HT +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 46.3 bits (111), Expect = 5e-07
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 543 LGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
IH+GEKPY C C FS++S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
Score = 45.5 bits (109), Expect = 1e-06
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPY 116
C CG S + L +H HTGEK Y+C C + + L HQR HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 39.0 bits (92), Expect = 2e-04
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 326 LLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYS 385
I SG E+P Y C C + +H R HTGEKP+KC C +
Sbjct: 2 SSGSSGIHSG-EKP---------YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKA 51
Query: 386 ASRRDTLDHH 395
S+ L +H
Sbjct: 52 FSQNSGLINH 61
Score = 36.3 bits (85), Expect = 0.002
Identities = 24/100 (24%), Positives = 29/100 (29%), Gaps = 32/100 (32%)
Query: 159 LRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCR--TC 216
H GEKPY C C F + L H R T
Sbjct: 2 SSGSSGIHSGEKPYGCVECG----------------------KAFSRSSILVQHQRVHTG 39
Query: 217 DKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPF 256
+K P Y+C C +S +I H R HT
Sbjct: 40 EK-P-------YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 75.6 bits (187), Expect = 7e-17
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 108 RKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHI 167
+G+K Y C C + S H+ +H G + + C C K +L HM+ H
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 168 GEKPYKCSSC 177
G KPY+C+ C
Sbjct: 62 GIKPYECNIC 71
Score = 67.5 bits (166), Expect = 5e-14
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
+H++ H+G++PY C C K L HM+IHTG KPY C++C +F
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81
Query: 572 KYHLTT 577
H+T+
Sbjct: 82 HRHVTS 87
Score = 64.8 bits (159), Expect = 5e-13
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G K Y C C T S RHM +H G +PY C +C KF L H
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Score = 62.5 bits (153), Expect = 3e-12
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
H+ H+ H GIKPY+C C+ + H + + K Y + + ++ S
Sbjct: 50 KHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 60.5 bits (148), Expect = 1e-11
Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 54/152 (35%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKH 307
+G++ + C+ C +F K D H+ H G R Y C C K L H++I
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-- 59
Query: 308 KISICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKK- 366
H +G +P Y C+ C K+
Sbjct: 60 ---------------------H----TG-IKP------------YECN------ICAKRF 75
Query: 367 ------HIRTHTGEKPFKCTHCRYSASRRDTL 392
H + K ++ + +
Sbjct: 76 MWRDSFHRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 60.1 bits (147), Expect = 2e-11
Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 35/138 (25%)
Query: 136 KVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIIC 195
SG+K + C+ C S KS HM H+G +PY C C KK
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCG---------KK------ 46
Query: 196 QHCDQSLFGTTQQLADHCR--TCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGE 253
F L H + T K P Y+C C ++ +H+ +
Sbjct: 47 -------FKMKHHLVGHMKIHTGIK---P-----YECNICAKRFMWRDSFHRHV--TSCT 89
Query: 254 RPFQCKICDSTFKRKQTL 271
+ ++ +
Sbjct: 90 KSYEAAKAEQNTTEASGP 107
Score = 59.0 bits (144), Expect = 5e-11
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
S+ +H+ H G RP+ C +C FK K L H+K HTG + Y+C C +D+
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81
Query: 300 GVHVRI 305
H +
Sbjct: 82 --HRHV 85
Score = 47.1 bits (113), Expect = 8e-07
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
HTG K YEC C + + + H+ + K Y
Sbjct: 60 HTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97
Score = 37.8 bits (89), Expect = 0.001
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 547 MRIHTGEKPYACSLCDLKFSQNSQLKYH 574
+G+K Y C C F+ SQ H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRH 28
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 72.2 bits (178), Expect = 6e-16
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 81 KHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH--CPYTARSSSYMLTHLKVH 138
K T + + C + LK H R HTGEKPY C C + S + H + H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 139 SGEKAFKCEYCSYSSYSKSNLRTHMRTH 166
+G + F+C+ C + +L HM+ H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 71.0 bits (175), Expect = 2e-15
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKC--LHCSYKSTQSSCLGRHMRIHTGE 553
+ C KS H++ H+ H G KPY C C +K +S L RH R HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 554 KPYACSLCDLKFSQNSQLKYHLTT 577
+P+ C CD FS++ L H+
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKR 87
Score = 66.4 bits (163), Expect = 7e-14
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 109 KHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKC--EYCSYSSYSKSNLRTHMRTH 166
K T C T SS++ HL+ H+GEK + C + C + L H R H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 167 IGEKPYKCSSCD 178
G +P++C CD
Sbjct: 61 TGHRPFQCQKCD 72
Score = 61.8 bits (151), Expect = 3e-12
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 224 RSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGE 281
++ C SS + H+R HTGE+P+ C C F R L H ++HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 282 RTYKCEFCDYTAARKDTLGVHVRI 305
R ++C+ CD +R D L +H++
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKR 87
Score = 55.6 bits (135), Expect = 4e-10
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQNSQLKYHLTT 577
C T+SS L H+R HTGEKPY C C KF+++ +L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 48.7 bits (117), Expect = 1e-07
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 365 KKHIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQ 422
K H+RTHTGEKP+ C C + +R D L H H + FQC CD ++ +L
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 423 MHALT 427
+H
Sbjct: 83 LHMKR 87
Score = 46.8 bits (112), Expect = 6e-07
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC--EFCDYTAARKDTLGVHVRI-- 305
T C T+ + L H++ HTGE+ Y C + C + AR D L H R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 306 KHKISICQNCG 316
H+ CQ C
Sbjct: 62 GHRPFQCQKCD 72
Score = 46.4 bits (111), Expect = 7e-07
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
S + +H R HTG RPFQC+ CD F R L LH+KRH
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.9 bits (89), Expect = 8e-04
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
S + +H H G +P++C C ++S L HM+ H
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 71.5 bits (176), Expect = 2e-15
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 511 KSGHMRQHINGHVGIKPYKC--LHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQN 568
KS H++ H+ H G KPYKC C ++ +S L RH R HTG KP+ C +C+ FS++
Sbjct: 29 KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS 88
Query: 569 SQLKYHLTT 577
L H+
Sbjct: 89 DHLALHMKR 97
Score = 67.3 bits (165), Expect = 5e-14
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 96 KTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKC--EYCSYSS 153
+ + +R H + P C SS++ HL+ H+GEK +KC E C +
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 154 YSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHV 191
L H R H G KP++C C+ ++ + H+
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 61.1 bits (149), Expect = 8e-12
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 SSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKD 297
SS + H+R HTGE+P++C CD F R L H ++HTG + ++C C+ + +R D
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89
Query: 298 TLGVHVRI 305
L +H++
Sbjct: 90 HLALHMKR 97
Score = 60.3 bits (147), Expect = 1e-11
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 75 LKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYML 132
LK H HTGEK Y+C W C ++ A ++L +H RKHTG KP+ CG C + S ++
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 133 THLKVH 138
H+K H
Sbjct: 93 LHMKRH 98
Score = 59.6 bits (145), Expect = 2e-11
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 60/154 (38%)
Query: 127 SSSYMLTHLKVHSGEKAFKCEYCSYSSYSK-SNLRTHMRTHIGEKPYKCSSCDFQATQKI 185
SS L ++H + C+ Y+K S+L+ H+RTH GEKPYKC+
Sbjct: 5 SSGPDLEKRRIHYCDY----PGCT-KVYTKSSHLKAHLRTHTGEKPYKCTW--------- 50
Query: 186 QVKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIK 245
+ CD F + +L H R
Sbjct: 51 ----------EGCDWR-FARSDELTRHYRK------------------------------ 69
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHT 279
HTG +PFQC +C+ +F R L LH+KRH
Sbjct: 70 ----HTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 51.1 bits (123), Expect = 2e-08
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 365 KKHIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQ 422
K H+RTHTGEKP+KCT C + +R D L H + H K FQC VC+ ++ +L
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 423 MHALT 427
+H
Sbjct: 93 LHMKR 97
Score = 40.3 bits (95), Expect = 1e-04
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHT 551
S + +H H G KP++C C+ ++S L HM+ H
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 39.9 bits (94), Expect = 2e-04
Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 43/135 (31%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC--EFCDYTAARKD 297
S ++ R H + P C + + L H++ HTGE+ YKC E CD+ AR D
Sbjct: 6 SGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 298 TLGVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYH 357
L H R KH +G +P + C C+
Sbjct: 62 ELTRHYR-KH--------------------------TG-AKP---------FQCGVCNRS 84
Query: 358 TGVRECMKKHIRTHT 372
+ + H++ H
Sbjct: 85 FSRSDHLALHMKRHQ 99
Score = 38.4 bits (90), Expect = 6e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHT 111
L RH+ KHTG K ++C C + + L H ++H
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 33.8 bits (78), Expect = 0.024
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 536 KSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
S S RIH + P C ++++S LK HL T
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRT 39
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 69.9 bits (172), Expect = 3e-15
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 110 HTGEKPYSCGH--CPYTARSSSYMLTHLKV-HSGEKAFKCEY--CSYSSYSKSNLRTHMR 164
+G C C + Y+ H K H +K+F C C S K +L+ HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 165 THIGEKPYKCSSC 177
H + Y C
Sbjct: 62 LHSDTRDYICEFS 74
Score = 55.2 bits (134), Expect = 5e-10
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 521 GHVGIKPYKCLH--CSYKSTQSSCLGRHMRI-HTGEKPYACS--LCDLKFSQNSQLKYH 574
G G C C + L H + H +K ++C C F+ LK H
Sbjct: 1 GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Score = 54.9 bits (133), Expect = 5e-10
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 240 SSRMIKHIR-NHTGERPFQCK--ICDSTFKRKQTLDLHIKRHTGERTYKCEFC 289
+ H + H ++ F C C +F K+ L H+K H+ R Y CEF
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 53.7 bits (130), Expect = 1e-09
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 512 SGHMRQHI-NGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSLC 561
++ H H+ K + C C L HM++H+ + Y C
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 51.0 bits (123), Expect = 1e-08
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 250 HTGERPFQCKI--CDSTFKRKQTLDLHIK-RHTGERTYKCEF--CDYTAARKDTLGVHVR 304
+G C C F +Q L+ H K +H ++++ C C + K L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 305 IKH---KISICQNCG 316
+ H + IC+ G
Sbjct: 62 L-HSDTRDYICEFSG 75
Score = 50.6 bits (122), Expect = 2e-08
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 65 CGHVESGAWRLKRHF-LKHTGEKSYEC--CWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
CG + S L H +H +KS+ C C ++ LK+H + H+ + Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 48.7 bits (117), Expect = 9e-08
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 57/131 (43%)
Query: 138 HSGEKAFKCEY--CSYSSYSKSNLRTHMR-THIGEKPYKCSSCDFQATQKIQVKKHVLII 194
SG C++ C ++ L H + HI +K +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS--------------------- 40
Query: 195 CQHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGER 254
C + C K ++ + +H++ H+ R
Sbjct: 41 ---CPEP-------------ACGK-----------SFNF------KKHLKEHMKLHSDTR 67
Query: 255 PFQCKICDSTF 265
+ C+ +
Sbjct: 68 DYICEFSGPSS 78
Score = 44.8 bits (107), Expect = 2e-06
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 36/107 (33%)
Query: 278 HTGERTYKCEF--CDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRICSG 335
+G C+F C + + L H + +H + C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH---------------IHQKSFSC----- 41
Query: 336 KERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHC 382
P+ + KSFN+ + +K+H++ H+ + + C
Sbjct: 42 ---PEPACGKSFNFKKH-----------LKEHMKLHSDTRDYICEFS 74
Score = 39.1 bits (92), Expect = 2e-04
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 371 HTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALTK 428
+G C C S R L+HH + H+++K F CP C K +N + H L +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA--CGKSFNFKKH-LKE 58
Query: 429 H 429
H
Sbjct: 59 H 59
Score = 34.8 bits (81), Expect = 0.008
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 550 HTGEKPYACSL--CDLKFSQNSQLKYHLTTRH 579
+G C C FS L +H +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 69.4 bits (171), Expect = 5e-15
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
F C C + +S H+ HI H G KP+ C C K +S RH I P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62
Query: 560 LCDLKFSQNSQLKYH 574
+ S+N L+
Sbjct: 63 KVEELLSKNYHLENE 77
Score = 69.1 bits (170), Expect = 8e-15
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 525 IKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
+KP++C C ++S L H+R HTGEKP+AC +C KF+++ + K H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 66.8 bits (164), Expect = 6e-14
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 114 KPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYK 173
KP+ C C S ++ TH++ H+GEK F C+ C + H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 174 CSSCDFQATQKIQVKKHV 191
+ ++ ++ V
Sbjct: 61 EDKVEELLSKNYHLENEV 78
Score = 65.2 bits (160), Expect = 1e-13
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 103 LKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTH 162
L H R HTGEKP++C C S H + + +L
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENE 77
Query: 163 ---MRTHIGEK 170
++ +GE+
Sbjct: 78 VARLKKLVGER 88
Score = 55.6 bits (135), Expect = 5e-10
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+QC C + S + HIR HTGE+PF C IC F R H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62
Query: 288 FCDYTAARKDTLGVHVR 304
+ ++ L V
Sbjct: 63 KVEELLSKNYHLENEVA 79
Score = 54.8 bits (133), Expect = 8e-10
Identities = 24/144 (16%), Positives = 37/144 (25%), Gaps = 60/144 (41%)
Query: 142 KAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQS 201
K F+C C + +L TH+RTH GEKP+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA---------------------------- 33
Query: 202 LFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKIC 261
C C + ++ S +H P
Sbjct: 34 -----------CDICGR-----------KFAR------SDERKRHRDIQH-ILPILEDKV 64
Query: 262 DSTFKRKQTLDLHIKR---HTGER 282
+ + L+ + R GER
Sbjct: 65 EELLSKNYHLENEVARLKKLVGER 88
Score = 50.2 bits (121), Expect = 3e-08
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 365 KKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
HIRTHTGEKPF C C +R D H + H + +K Y+L+
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILEDKVEELLSKNYHLENE 77
Score = 48.6 bits (117), Expect = 1e-07
Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 35/122 (28%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQ 313
+PFQC+IC F R L HI+ HTGE+ + C+ C AR D H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-Q------ 54
Query: 314 NCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTG 373
+ + + E ++ G
Sbjct: 55 ---------HILPIL-EDKVE----------ELLS--------KNYHLENEVARLKKLVG 86
Query: 374 EK 375
E+
Sbjct: 87 ER 88
Score = 42.1 bits (100), Expect = 2e-05
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRH---MRIHTGEK 554
S ++H + I P +++ L ++ GE+
Sbjct: 44 SDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 36.7 bits (86), Expect = 0.002
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 365 KKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQ 397
K+H P S+ L++ +
Sbjct: 48 KRHRDIQH-ILPILEDKVEELLSKNYHLENEVA 79
Score = 28.2 bits (64), Expect = 2.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 375 KPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMH 424
KPF+C C + SR D L HI+ H +K F C +C + + + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 50
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 69.4 bits (170), Expect = 5e-15
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 521 GHVGIKPYKCLHCSYKSTQSSCLGRHMRIHT---GEKPYACSLCDLKFSQNSQLKYHLTT 577
G G +C C + Q + L H R H + C C +F + + H +
Sbjct: 1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 578 RHDLPDMSTC 587
H ++
Sbjct: 61 SHPALLLAPQ 70
Score = 67.8 bits (166), Expect = 2e-14
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 110 HTGEKPYSCGHCPYTARSSSYMLTHLKVHS---GEKAFKCEYCSYSSYSKSNLRTHMRTH 166
+G C C +T R + + H + H+ F CE+C ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 167 IGEKPYKCSSC 177
Sbjct: 62 HPALLLAPQES 72
Score = 66.7 bits (163), Expect = 4e-14
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHT---GERTYKCEFCDYTAARKDTLGVHVRIK 306
+G QC+IC T ++K +L+ H ++H + CEFC + D++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 307 H 307
H
Sbjct: 62 H 62
Score = 61.3 bits (149), Expect = 3e-12
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 138 HSGEKAFKCEYCSYSSYSKSNLRTHMRTH---IGEKPYKCSSCDFQATQKIQVKKHVLI 193
SG +CE C ++ K++L H R H + + C C + + V H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 52.0 bits (125), Expect = 6e-09
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 371 HTGEKPFKCTHCRYSASRRDTLDHHIQV--SHLYKKRFQCPVCDYRCTKKYNLQMHALTK 428
+G +C C ++ ++ +L+ H + + RF C C R K ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 429 H 429
H
Sbjct: 62 H 62
Score = 51.6 bits (124), Expect = 7e-09
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHT---GERPFQCKICDSTFKRKQTLDLHIKRHTGERTY 284
QC C + + + H R H F C+ C F++ ++ H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 285 KCE 287
+
Sbjct: 68 APQ 70
Score = 45.9 bits (109), Expect = 9e-07
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHT---GEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKR 405
C C + + + H R H F C C + D++ H SH
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 406 FQCPVC 411
Sbjct: 68 APQESS 73
Score = 44.7 bits (106), Expect = 2e-06
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 3/62 (4%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGH---VGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPY 556
C C + + + H H V + C C + + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 557 AC 558
A
Sbjct: 68 AP 69
Score = 40.5 bits (95), Expect = 6e-05
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 61 TCCICGHVESGAWRLKRHFLKHT---GEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYS 117
C ICG L H KH + C +C + + + H+ K +
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Query: 118 CGHCP 122
Sbjct: 69 PQESS 73
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 67.4 bits (166), Expect = 3e-14
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQL 571
S + H+ H +PY C +C + Q S + +H IHTGEKP+ C +C FSQ+S L
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Query: 572 KYH 574
H
Sbjct: 74 ITH 76
Score = 63.6 bits (156), Expect = 5e-13
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 116 YSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCS 175
+ C C + + SS + THL +HS + + C+YC + KS+++ H H GEKP+KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 176 SC 177
C
Sbjct: 62 VC 63
Score = 60.5 bits (148), Expect = 7e-12
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
SS + H+ H+ RP+ C+ C F +K + H HTGE+ +KC+ C ++ L
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Query: 300 GVHVRI 305
H R
Sbjct: 74 ITHSRK 79
Score = 58.6 bits (143), Expect = 4e-11
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTH 134
L H L H+ + Y C +C + ++D+KKH HTGEKP+ C C SS ++TH
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Query: 135 LKVHSG 140
+ H+G
Sbjct: 77 SRKHTG 82
Score = 56.7 bits (138), Expect = 2e-10
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
+ C C +SS L H+ IH+ +PY C C +F Q S +K H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 46.3 bits (111), Expect = 7e-07
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTG 280
S M KH HTGE+P +C++C F + L H ++HTG
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 43.6 bits (104), Expect = 6e-06
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTG 552
M++H H G KP+KC C +QSS L H R HTG
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 43.2 bits (103), Expect = 1e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 143 AFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSC 177
+F C+ C S S L TH+ H +PY C C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYC 35
Score = 42.4 bits (101), Expect = 1e-05
Identities = 36/140 (25%), Positives = 43/140 (30%), Gaps = 65/140 (46%)
Query: 256 FQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQNC 315
F CKIC +FKR TL H+ H+ R Y CQ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYP--------------------------CQYC 35
Query: 316 GLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEK 375
G K F+ + MKKH HTGEK
Sbjct: 36 G----------------------------KRFHQ-----------KSDMKKHTFIHTGEK 56
Query: 376 PFKCTHCRYSASRRDTLDHH 395
P KC C + S+ L H
Sbjct: 57 PHKCQVCGKAFSQSSNLITH 76
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 63.7 bits (156), Expect = 4e-13
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLH--IKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE ++CK+C + H + Y C FC RKD + HV+I
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 306 KHKI 309
HKI
Sbjct: 63 IHKI 66
Score = 63.3 bits (155), Expect = 5e-13
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRI--HTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
G Y+C CS T S RH K Y C C +F++ + H+ H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 580 DL 581
+
Sbjct: 65 KI 66
Score = 60.3 bits (147), Expect = 5e-12
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 107 QRKHTGEKPYSCGHCPYTARSSSYMLTHLKV--HSGEKAFKCEYCSYSSYSKSNLRTHMR 164
+ GE Y C C S H K + C +C K N+ H++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 165 TH 166
Sbjct: 62 II 63
Score = 50.6 bits (122), Expect = 1e-08
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 369 RTHTGEKPFKCTHCRYSASRRDTLDHHIQVS-HLYKKRFQCPVCDYRCTKKYNLQMHALT 427
T GE ++C C + H S K + CP C T+K N+ H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 428 KHDL 431
H +
Sbjct: 63 IHKI 66
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRN--HTGERPFQCKICDSTFKRKQTLDLHIKRHTG 280
Y+C C + S +H + + C C F RK + H+K
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 43.7 bits (104), Expect = 4e-06
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 500 FVCFTCNYHTYKSGHMRQH--INGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTG 552
+ C C+ + +H + +K Y C C + T+ + H++I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 42.9 bits (102), Expect = 7e-06
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 548 RIHTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
GE Y C +C ++ S H T H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
Score = 42.2 bits (100), Expect = 1e-05
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 349 YVCYTCDYHTGVRECMKKHIRT--HTGEKPFKCTHCRYSASRRDTLDHHIQVSH 400
Y C C +H T K + C C +R+D + H+++ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 34.1 bits (79), Expect = 0.010
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 10/61 (16%)
Query: 164 RTHIGEKPYKCSSCDFQATQKIQVKKHVLII---------CQHCDQSLFGTTQQLADHCR 214
T GE Y+C C T +H + C C + F + H +
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKE-FTRKDNMTAHVK 61
Query: 215 T 215
Sbjct: 62 I 62
Score = 33.3 bits (77), Expect = 0.021
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 61 TCCICGHVESGAWRLKRHF--LKHTGEKSYECCWCTYKTAYENDLKKHQRKHTG 112
C +C V + RH+ K Y C +C + ++++ H +
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 29.4 bits (67), Expect = 0.40
Identities = 15/96 (15%), Positives = 22/96 (22%), Gaps = 35/96 (36%)
Query: 278 HTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKE 337
GE TY+C+ C H HK + C C
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHK--------------RNVKVYPCPFCF--- 47
Query: 338 RPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTG 373
K F ++ M H++
Sbjct: 48 -------KEFTR-----------KDNMTAHVKIIHK 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 62.5 bits (153), Expect = 8e-13
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
+ + C C+ + L RH R HT EKPY C LC+ F++ L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKR-HTGE 281
+ C C + +H R+HT E+P+ C +C+ F R+ L H ++ H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 48.3 bits (116), Expect = 9e-08
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHL-KVHSGEKA 143
+S+ C CT A + LK+H R HT EKPY CG C ++ H K+HSG
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 47.9 bits (115), Expect = 1e-07
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKH 307
R F C++C F R++ L H + HT E+ Y C C+ R+D L H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 45.6 bits (109), Expect = 6e-07
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSH 400
+VC C +E +K+H R+HT EKP+ C C + +RRD L H Q H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 43.6 bits (104), Expect = 4e-06
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 142 KAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCD 178
++F CE C+ + + +L+ H R+H EKPY C C+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCN 37
Score = 42.9 bits (102), Expect = 6e-06
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 500 FVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHM-RIHTGEK 554
FVC C + H+++H H KPY C C+ T+ L RH +IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 42.1 bits (100), Expect = 1e-05
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 114 KPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHM-RTHIGEK 170
+ + C C ++ H + H+ EK + C C+ + + L H + H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 35.2 bits (82), Expect = 0.004
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKH-QRKHTGEK 114
C +C + LKRH+ HT EK Y C C + L +H Q+ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 29.0 bits (66), Expect = 0.49
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 375 KPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHA 425
+ F C C + +R++ L H SH +K + C +C+ T++ L HA
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 61.9 bits (151), Expect = 2e-12
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 511 KSGHMRQHINGHVGIKPYKC--LHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQN 568
++ ++ ++PY C C + ++S L RH+RIHTG+KP+ C +C FS++
Sbjct: 5 PMNNLLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 569 SQLKYHLTT 577
L H+ T
Sbjct: 63 DHLTTHIRT 71
Score = 53.5 bits (129), Expect = 2e-09
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 75 LKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYML 132
L + + Y C C + + ++L +H R HTG+KP+ C C S ++
Sbjct: 9 LLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 133 THLKVHS 139
TH++ H+
Sbjct: 67 THIRTHT 73
Score = 50.4 bits (121), Expect = 2e-08
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 248 RNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
RP+ C + CD F R L HI+ HTG++ ++C C +R D L H+R
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 48.1 bits (115), Expect = 1e-07
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHT 279
S + +HIR HTG++PFQC+IC F R L HI+ HT
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 45.0 bits (107), Expect = 1e-06
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 132 LTHLKVHS--GEKAFKC--EYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQV 187
+ +L + + + C E C L H+R H G+KP++C C ++ +
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 188 KKHV 191
H+
Sbjct: 66 TTHI 69
Score = 42.7 bits (101), Expect = 9e-06
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 365 KKHIRTHTGEKPFKCTHCRYSASRRDTLDHHI 396
+HIR HTG+KPF+C C + SR D L HI
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 40.8 bits (96), Expect = 5e-05
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 512 SGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHT 551
S + +HI H G KP++C C ++S L H+R HT
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.8 bits (91), Expect = 3e-04
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 369 RTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHAL 426
+P+ C C SR D L HI+ H +K FQC +C ++ +L H
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Query: 427 T 427
T
Sbjct: 71 T 71
Score = 32.3 bits (74), Expect = 0.049
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 540 SSCLGRHMRIHTGEKPYACSL--CDLKFSQNSQLKYHLTT 577
+ +PYAC + CD +FS++ +L H+
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI 43
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 59.9 bits (146), Expect = 1e-11
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 511 KSGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQN 568
K ++ H H PY+C H C + + S L RH ++H G C
Sbjct: 15 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 74
Query: 569 SQLKYHLTTRH 579
+ H+ H
Sbjct: 75 TLYLKHVAECH 85
Score = 58.0 bits (141), Expect = 5e-11
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 101 NDLKKHQRKHTGEKPYSCGH--CPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSN 158
N LK HQ HT + PY C H C S + H KVH+G K + CS+ + +
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 76
Query: 159 LRTHM-RTH 166
H+ H
Sbjct: 77 YLKHVAECH 85
Score = 56.9 bits (138), Expect = 2e-10
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 75 LKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYML 132
LK H HT + YEC C + + + LK+H++ H G C + ++ + L
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 78
Query: 133 THLK 136
H+
Sbjct: 79 KHVA 82
Score = 55.3 bits (134), Expect = 5e-10
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 240 SSRMIKHIRNHTGERPFQCK--ICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKD 297
+++ H +HT + P++C CD F L H K H G K + C +
Sbjct: 16 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 75
Query: 298 TLGVHVRIKH 307
HV H
Sbjct: 76 LYLKHVAECH 85
Score = 40.3 bits (95), Expect = 1e-04
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 365 KKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSH 400
K+H + H G K C + H+ H
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 228 YQC--YSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKR 277
Y+C C+ SR+ +H + H G + C K H+
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Score = 36.1 bits (84), Expect = 0.003
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 258 CKICDSTFKRKQTLDLHIKRHTGERTYKC--EFCDYTAARKDTLGVHVRI--KHKISICQ 313
+ C FK+ L +H HT + Y+C E CD + L H ++ +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 314 NCGLILSTITEELLEHCRI 332
+C + T T L
Sbjct: 66 SCSFVGKTWTLYLKHVAEC 84
Score = 30.3 bits (69), Expect = 0.30
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 74 RLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRK 109
RLKRH H G + C++ KH +
Sbjct: 48 RLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.6 bits (143), Expect = 1e-11
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKP+ C C +KAF KSNL H RT
Sbjct: 3 SGSSGTGEKPFECSEC-------------------QKAFNT---------KSNLIVHQRT 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 9e-10
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KP++C C S L H R HTGEKP S
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK +EC C +++L HQR HTGEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+PF+C C F K L +H + HTGE+
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKP+ CS C F+ S L H
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 38.2 bits (90), Expect = 2e-04
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKPF+C+ C+ + + + L H Q +H +K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKP++CS C
Sbjct: 2 SSGSSGTGEKPFECSEC 18
Score = 31.7 bits (73), Expect = 0.046
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 366 KHIRTHTGEKPFKCT 380
H RTHTGEKP +
Sbjct: 30 VHQRTHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.047
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C+ S +I H R HTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.63
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ ++C C K L VH R
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRT 34
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C KAF KS L H +
Sbjct: 2 SSGSSGTGEKPYKCSDC-------------------GKAFTR---------KSGLHIHQQ 33
Query: 165 THIGEKPYKCSS 176
+H GE+ SS
Sbjct: 34 SHTGERHSGPSS 45
Score = 54.4 bits (132), Expect = 3e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPYKC C T+ S L H + HTGE+ S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 51.0 bits (123), Expect = 7e-09
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C C F RK L +H + HTGER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY CS C F++ S L H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C ++ L HQ+ HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC+ C + +R+ L H Q SH ++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGP 43
Score = 37.5 bits (88), Expect = 4e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKCS C T+K + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 30.6 bits (70), Expect = 0.098
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
Y C C + + H ++HTGE+ +
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 30.6 bits (70), Expect = 0.12
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C RK L +H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34
Score = 28.6 bits (65), Expect = 0.55
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C S + H ++HTGER
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C KAF +SNL TH +
Sbjct: 3 SGSSGTGEKPYRCAEC-------------------GKAFTD---------RSNLFTHQKI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 54.4 bits (132), Expect = 3e-10
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPY+C C T S L H +IHTGEKP S
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y C C ++L HQ+ HTGEKP
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F + L H K HTGE+
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F+ S L H
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C C + + R L H Q H +K
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY+C+ C T + + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 30.9 bits (71), Expect = 0.072
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
Y C C R + H + HTGEKP +
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.52
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C S + H + HTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C C + L H +I
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI 34
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-11
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ S EK +KCE C + NL H R H+GEK SS
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 54.8 bits (133), Expect = 3e-10
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ KPYKC C + L H R+H GEK S
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ + E+P++C+ C + R+ LD+H + H GE+T
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+ EK Y+C C +L HQR H GEK
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G + EKPY C C +++ L H
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ + EKP+KC C +RR LD H Q H+ +K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGP 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + EKPYKC C
Sbjct: 2 SSGSSGSVEKPYKCEDC 18
Score = 30.2 bits (69), Expect = 0.17
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 329 HCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
S E+P Y C C R + H R H GEK +
Sbjct: 3 SGSSGSV-EKP---------YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 29.8 bits (68), Expect = 0.23
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+ E+ YKCE C R+ L +H R+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV 34
Score = 27.8 bits (63), Expect = 1.1
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + H R H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-11
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C KAF+ +S+L H
Sbjct: 2 SSGSSGTGEKPYKCNEC-------------------GKAFRA---------RSSLAIHQA 33
Query: 165 THIGEKPYKCSS 176
TH GEKP SS
Sbjct: 34 THSGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 7e-10
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPYKC C S L H H+GEKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 48.7 bits (117), Expect = 5e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C + L HQ H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 8e-08
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C C F+ + +L +H H+GE+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F S L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 37.9 bits (89), Expect = 3e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C + R +L H Q +H +K
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.013
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPYKC+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 30.6 bits (70), Expect = 0.093
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
Y C C R + H TH+GEKP +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.16
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C S + H H+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.67
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C + +L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT 34
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 57.2 bits (139), Expect = 4e-11
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TG KPY C C K F KS L H R
Sbjct: 2 SSGSSGTGVKPYGCSQC-------------------AKTFSL---------KSQLIVHQR 33
Query: 165 THIGEKPYKCSS 176
+H G KP SS
Sbjct: 34 SHTGVKPSGPSS 45
Score = 51.4 bits (124), Expect = 4e-09
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G+KPY C C+ + S L H R HTG KP S
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TG +P+ C C TF K L +H + HTG +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.5 bits (119), Expect = 2e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TG K Y C C + ++ L HQR HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG KPY CS C FS SQL H
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TG KP+ C+ C + S + L H Q SH K
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGP 43
Score = 34.0 bits (79), Expect = 0.007
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + G KPY CS C + K Q+ H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 31.0 bits (71), Expect = 0.078
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C S++I H R+HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 30.6 bits (70), Expect = 0.11
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 14/38 (36%)
Query: 357 HTGVR-----ECMK---------KHIRTHTGEKPFKCT 380
TGV+ +C K H R+HTG KP +
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 29.4 bits (67), Expect = 0.25
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TG + Y C C T + K L VH R
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS 34
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 4e-11
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C K + K NL H +
Sbjct: 2 SSGSSGTGEKPYKCEKC-------------------GKGYNS---------KFNLDMHQK 33
Query: 165 THIGEKPYKCSS 176
H GE+P SS
Sbjct: 34 VHTGERPSGPSS 45
Score = 53.7 bits (130), Expect = 7e-10
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C L H ++HTGE+P S
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C+ C + K LD+H K HTGER
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C + +L HQ+ HTGE+P
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C C ++ L H
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C + + LD H Q H ++
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC C K + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 30.2 bits (69), Expect = 0.16
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
H + HTGE+P +
Sbjct: 30 MHQKVHTGERPSGPS 44
Score = 30.2 bits (69), Expect = 0.16
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKCE C K L +H ++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 29.0 bits (66), Expect = 0.34
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + H + HTGERP
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 57.1 bits (139), Expect = 4e-11
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKP+ C C K F +S L H +
Sbjct: 2 SSGSSGTGEKPFKCVEC-------------------GKGFSR---------RSALNVHHK 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 LHTGEKPSGPSS 45
Score = 54.1 bits (131), Expect = 5e-10
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KP+KC+ C ++ S L H ++HTGEKP S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+PF+C C F R+ L++H K HTGE+
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK ++C C + + L H + HTGEKP
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKP+ C C FS+ S L H
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 39.4 bits (93), Expect = 8e-05
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKPFKC C SRR L+ H H +K
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP+KC C +++ + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 34.0 bits (79), Expect = 0.006
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
+ C C R + H + HTGEKP +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.33
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ +KC C +R+ L VH ++
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34
Score = 28.3 bits (64), Expect = 0.65
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C S + H + HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 57.1 bits (139), Expect = 4e-11
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKP+ C C K+F S L TH R
Sbjct: 2 SSGSSGTGEKPFECAEC-------------------GKSFSI---------SSQLATHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 54.0 bits (131), Expect = 5e-10
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KP++C C + SS L H RIHTGEKP S
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+PF+C C +F L H + HTGE+
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK +EC C + + L HQR HTGEKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 5e-08
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKP+ C+ C FS +SQL H
Sbjct: 1 GSSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 37.5 bits (88), Expect = 4e-04
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKPF+C C S S L H Q H +K
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH-QRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.017
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKP++C+ C
Sbjct: 2 SSGSSGTGEKPFECAEC 18
Score = 32.1 bits (74), Expect = 0.031
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
H R HTGEKP +
Sbjct: 30 THQRIHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.17
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C SS++ H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.66
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ ++C C + + L H RI
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI 34
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.8 bits (138), Expect = 5e-11
Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C K F C + +L TH
Sbjct: 3 SGSSGTGEKPYKCEEC-------------------GKGFIC---------RRDLYTHHMV 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 54.5 bits (132), Expect = 3e-10
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C L H +HTGEKP S
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 47.2 bits (113), Expect = 1e-07
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C DL H HTGEKP
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C+ C F ++ L H HTGE+
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C C F L H
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP+KC C R L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC C + + H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 31.0 bits (71), Expect = 0.074
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
Y C C R + H HTGEKP +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.28
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + + H HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.47
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKCE C + L H +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV 34
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.7 bits (138), Expect = 6e-11
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 28/69 (40%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C +KAF KSNL H RT
Sbjct: 3 SGSSGTGEKPYECNEC-------------------QKAFNT---------KSNLMVHQRT 34
Query: 166 HIGEKPYKC 174
H GE
Sbjct: 35 HTGESGPSS 43
Score = 51.3 bits (124), Expect = 5e-09
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
TGEK YEC C +++L HQR HTGE S G
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 50.9 bits (123), Expect = 6e-09
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYAC 558
G KPY+C C S L H R HTGE +
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 49.0 bits (118), Expect = 3e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C C F K L +H + HTGE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F+ S L H
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C C+ + + + L H Q +H +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH-QRTHTGESGPSS 43
Score = 34.4 bits (80), Expect = 0.005
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY+C+ C
Sbjct: 2 SSGSSGTGEKPYECNEC 18
Score = 30.5 bits (70), Expect = 0.098
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 366 KHIRTHTGEKPFKC 379
H RTHTGE
Sbjct: 30 VHQRTHTGESGPSS 43
Score = 29.8 bits (68), Expect = 0.17
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C+ S ++ H R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.26
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C C K L VH R
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT 34
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-11
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
GEKPY C C KAF KS L HMRT
Sbjct: 3 SGSSGAGEKPYGCSEC-------------------GKAFSS---------KSYLIIHMRT 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HSGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY C C + S L HMR H+GEKP S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 1e-08
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ GE+P+ C C F K L +H++ H+GE+
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
GEK Y C C + ++ L H R H+GEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 47.2 bits (113), Expect = 2e-07
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G GEKPY CS C FS S L H
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ GEKP+ C+ C + S + L H +H +K
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTHSGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.006
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY CS C + K + H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 31.4 bits (72), Expect = 0.058
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C S +I H+R H+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.061
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 367 HIRTHTGEKPFKCT 380
H+RTH+GEKP +
Sbjct: 31 HMRTHSGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.87
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE+ Y C C + K L +H+R
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT 34
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-11
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C K+F KS LR H +
Sbjct: 3 SGSSGTGEKPYKCSDC-------------------GKSFTW---------KSRLRIHQKC 34
Query: 166 HIGEKPYKCSS 176
H GE+ SS
Sbjct: 35 HTGERHSGPSS 45
Score = 54.1 bits (131), Expect = 5e-10
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C T S L H + HTGE+ S
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C C +F K L +H K HTGER
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 47.9 bits (115), Expect = 8e-08
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C +++ L+ HQ+ HTGE+
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY CS C F+ S+L+ H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKCS C T K +++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC+ C S + + L H Q H ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGP 43
Score = 31.4 bits (72), Expect = 0.065
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
Y C C + ++ H + HTGE+ +
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 31.0 bits (71), Expect = 0.088
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + SR+ H + HTGER
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C + K L +H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 7e-11
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C K+F KS L H R
Sbjct: 2 SSGSSGTGEKPYECSDC-------------------GKSFIK---------KSQLHVHQR 33
Query: 165 THIGEKPYKCSS 176
H GE P SS
Sbjct: 34 IHTGENPSGPSS 45
Score = 54.1 bits (131), Expect = 4e-10
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C + S L H RIHTGE P S
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C C +F +K L +H + HTGE
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 49.1 bits (118), Expect = 3e-08
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK YEC C ++ L HQR HTGE P
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 47.2 bits (113), Expect = 2e-07
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY CS C F + SQL H
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 36.4 bits (85), Expect = 0.001
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP++C+ C S ++ L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY+CS C +K Q+ H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 30.6 bits (70), Expect = 0.10
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 367 HIRTHTGEKPFKCTH 381
H R HTGE P +
Sbjct: 31 HQRIHTGENPSGPSS 45
Score = 29.8 bits (68), Expect = 0.22
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + S++ H R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 29.8 bits (68), Expect = 0.23
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C C + +K L VH RI
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI 34
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 8e-11
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY C C S+ L +H+R+HT E S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 54.4 bits (132), Expect = 4e-10
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPYSC C KAF ++L H+R
Sbjct: 2 SSGSSGTGEKPYSCNVC-------------------GKAFVL---------SAHLNQHLR 33
Query: 165 THIGEKPYKCSS 176
H E SS
Sbjct: 34 VHTQETLSGPSS 45
Score = 47.5 bits (114), Expect = 9e-08
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P+ C +C F L+ H++ HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y C C L +H R HT E
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 46.0 bits (110), Expect = 4e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY+C++C F ++ L H
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 37.5 bits (88), Expect = 4e-04
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+ C C + L+ H H +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGP 43
Score = 33.3 bits (77), Expect = 0.011
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 162 HMRTHIGEKPYKCSSC 177
+ GEKPY C+ C
Sbjct: 3 SGSSGTGEKPYSCNVC 18
Score = 31.3 bits (72), Expect = 0.058
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H+R HT E +
Sbjct: 30 QHLRVHTQETLSGPSS 45
Score = 28.6 bits (65), Expect = 0.56
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCK 259
Y C C + S+ + +H+R HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y C C L H+R+
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV 34
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 56.4 bits (137), Expect = 8e-11
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TG+KP+ C HC K+F+ K NL TH R
Sbjct: 3 SGSSGTGQKPFECTHC-------------------GKSFRA---------KGNLVTHQRI 34
Query: 166 HIGEKPYKCS 175
H GEK S
Sbjct: 35 HTGEKSGPSS 44
Score = 53.7 bits (130), Expect = 7e-10
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KP++C HC L H RIHTGEK S
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TG++PF+C C +F+ K L H + HTGE++
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 47.5 bits (114), Expect = 9e-08
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TG+K +EC C + +L HQR HTGEK
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG+KP+ C+ C F L H
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 39.8 bits (94), Expect = 6e-05
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TG+KPF+CTHC S + L H Q H +K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH-QRIHTGEKSGPS 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + G+KP++C+ C K + H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 30.2 bits (69), Expect = 0.14
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 366 KHIRTHTGEKPFKCT 380
H R HTGEK +
Sbjct: 30 THQRIHTGEKSGPSS 44
Score = 29.4 bits (67), Expect = 0.30
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TG++ ++C C + K L H RI
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI 34
Score = 29.0 bits (66), Expect = 0.42
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C ++ H R HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGE+PY C C KAF +SNL H +
Sbjct: 3 SGSSGTGERPYICTVC-------------------GKAFTD---------RSNLIKHQKI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 55.6 bits (135), Expect = 1e-10
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G +PY C C T S L +H +IHTGEKP S
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGE+ Y C C ++L KHQ+ HTGEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGERP+ C +C F + L H K HTGE+
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGE+PY C++C F+ S L H
Sbjct: 1 GSSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGE+P+ CT C + + R L H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 33.6 bits (78), Expect = 0.008
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE+PY C+ C T + + KH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 31.3 bits (72), Expect = 0.049
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
Y+C C R + KH + HTGEKP +
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.14
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C S +IKH + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGER Y C C + L H +I
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C K+F KS L H +
Sbjct: 2 SSGSSGTGEKPYECSIC-------------------GKSFTK---------KSQLHVHQQ 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 6e-10
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C T+ S L H +IHTGEKP S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 7e-09
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK YEC C ++ L HQ+ HTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 49.5 bits (119), Expect = 2e-08
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C IC +F +K L +H + HTGE+
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY CS+C F++ SQL H
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 36.4 bits (85), Expect = 9e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C+ C S +++ L H Q H +K
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY+CS C T+K Q+ H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 32.1 bits (74), Expect = 0.033
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
Y C C + + H + HTGEKP +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.31
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCK 259
Y+C C S++ H + HTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.37
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C C + +K L VH +I
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQI 34
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C KAF+ SNL TH
Sbjct: 3 SGSSGTGEKPYKCNEC-------------------GKAFRA---------HSNLTTHQVI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 54.8 bits (133), Expect = 3e-10
Identities = 18/43 (41%), Positives = 19/43 (44%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPYKC C S L H IHTGEKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F+ L H HTGE+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C ++L HQ HTGEKP
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F +S L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 36.7 bits (86), Expect = 6e-04
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C + L H QV H +K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.008
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPYKC+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 29.4 bits (67), Expect = 0.24
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 366 KHIRTHTGEKPFKCT 380
H HTGEKP +
Sbjct: 30 THQVIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.47
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C S + H HTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.58
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C L H I
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI 34
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ SGEK FKCE C Y+ S +H R+H GEKP SS
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 1e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KP+KC C +S H R H+GEKP S
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEK ++C C + HQR H+GEKP
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ +GE+PF+C+ C F H + H+GE+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKP+ C C F NSQ H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GEKPFKC C H Q SH +K
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH-QRSHSGEKPSGP 43
Score = 34.5 bits (80), Expect = 0.005
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP+KC C Q H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 29.8 bits (68), Expect = 0.17
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 366 KHIRTHTGEKPFKCT 380
H R+H+GEKP +
Sbjct: 30 SHQRSHSGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C +S+ H R+H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ +KCE C H R
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS 34
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G + ++C C Q+S +H RIHTGEKP S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 7e-10
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ GE+ +C C SN H R H GEKP SS
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ GER +C C F + H + HTGE+
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
GE+ + C C ++ +H+R HTGEKP
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G GE+ + CS C F Q S H
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 35.6 bits (83), Expect = 0.002
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ GE+ +C+ C + H + H +K
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.012
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE+ ++CS C Q +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 29.0 bits (66), Expect = 0.39
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C L +S I+H R HTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.62
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GER ++C C + H RI
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 27.5 bits (62), Expect = 1.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 366 KHIRTHTGEKPFKCT 380
+H R HTGEKP +
Sbjct: 30 QHRRIHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.0 bits (136), Expect = 1e-10
Identities = 19/70 (27%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TG KPY C C KAF+ KS L H R
Sbjct: 2 SSGSSGTGMKPYVCNECG-------------------KAFRS---------KSYLIIHTR 33
Query: 165 THIGEKPYKC 174
TH GE
Sbjct: 34 THTGESGPSS 43
Score = 50.6 bits (122), Expect = 7e-09
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYAC 558
G+KPY C C S L H R HTGE +
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
TG K Y C C ++ L H R HTGE S G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TG +P+ C C F+ K L +H + HTGE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 45.9 bits (110), Expect = 4e-07
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG KPY C+ C F S L H
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 37.1 bits (87), Expect = 4e-04
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TG KP+ C C + + L H +H +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.008
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + G KPY C+ C
Sbjct: 2 SSGSSGTGMKPYVCNEC 18
Score = 29.8 bits (68), Expect = 0.18
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C S +I H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 27.4 bits (62), Expect = 1.3
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TG + Y C C K L +H R
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY C +C S+ L RH RIHTGEKP S
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 3e-10
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
+GEKPY C +C KAF + L H R
Sbjct: 2 SSGSSGSGEKPYVCDYC-------------------GKAFGL---------SAELVRHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 49.0 bits (118), Expect = 3e-08
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
+GEK Y C +C +L +HQR HTGEKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKPY C C F +++L H
Sbjct: 1 GSSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ +GE+P+ C C F L H + HTGE+
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GEKP+ C +C + L H Q H +K
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.021
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY C C
Sbjct: 2 SSGSSGSGEKPYVCDYC 18
Score = 31.3 bits (72), Expect = 0.053
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
YVC C G+ + +H R HTGEKP +
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.18
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C S+ +++H R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.3
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ Y C++C L H RI
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI 34
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 22/72 (30%), Positives = 24/72 (33%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY+C C KAF S L+ H R
Sbjct: 2 SSGSSGTGEKPYNCEEC-------------------GKAFIH---------DSQLQEHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 6e-10
Identities = 18/38 (47%), Positives = 18/38 (47%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPY C C S L H RIHTGEKP S
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y C C +++ L++HQR HTGEKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 9e-08
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P+ C+ C F L H + HTGE+
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 9e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C C F +SQL+ H
Sbjct: 1 GSSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP+ C C + L H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 33.3 bits (77), Expect = 0.011
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY C C
Sbjct: 2 SSGSSGTGEKPYNCEEC 18
Score = 29.8 bits (68), Expect = 0.18
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 366 KHIRTHTGEKPFKCT 380
+H R HTGEKP +
Sbjct: 30 EHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.22
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C ++ S++ +H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.67
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y CE C L H RI
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI 34
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 55.6 bits (135), Expect = 1e-10
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYA 557
G KPYKC C + Q + L H+ IHTG P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 52.1 bits (126), Expect = 2e-09
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 134 HLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPY 172
GEK +KCE C ++LR H+ H G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYS 117
GEK Y+C C + L+ H HTG P S
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 45.2 bits (108), Expect = 7e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 546 HMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
GEKPY C C +F Q + L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTY 284
+ GE+P++C+ C + F + L H+ HTG
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 39.8 bits (94), Expect = 5e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 162 HMRTHIGEKPYKCSSCDFQATQKIQVKKHVLI 193
+ GEKPYKC +C + Q ++ HVLI
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ GEKP+KC C + L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 30.2 bits (69), Expect = 0.12
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE+ YKCE C + L HV I
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 28.6 bits (65), Expect = 0.49
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPF 377
Y C TC ++ H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 26.7 bits (60), Expect = 2.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPF 256
Y+C +C + + + H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ +G K +KC C +Q+S L H +H GEKP S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 55.2 bits (134), Expect = 2e-10
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ GEK +KC C S+LR H H+GEKP SS
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 49.5 bits (119), Expect = 2e-08
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ GE+ ++C+ CD F + +L LH H GE+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
GEK+++C C + + L+ HQ H GEKP
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G GEK + C CD+ FSQ S L+ H
Sbjct: 1 GSSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 36.8 bits (86), Expect = 6e-04
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + +GEK +KC CD +Q ++ H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ GEK +KC C S+ +L H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 31.7 bits (73), Expect = 0.038
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
+ C CD ++ H H GEKP +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.076
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE+T+KC CD ++ +L +H +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ +GEK FKC+ C S +S L H H EKP SS
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 54.0 bits (131), Expect = 5e-10
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KP+KC C S L RH +HT EKP S
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 48.6 bits (117), Expect = 4e-08
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+PF+C IC +F + L+ H HT E+
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK ++C C + L +H HT EKP
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKP+ C +C F S+L H
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 37.9 bits (89), Expect = 3e-04
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKPFKC C S R L+ H + H +K
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGP 43
Score = 34.4 bits (80), Expect = 0.005
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP+KC C + ++ +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 30.5 bits (70), Expect = 0.10
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
+ C C R + +H HT EKP +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.30
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C SR+ +H HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 29.0 bits (66), Expect = 0.43
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ +KC+ C + + L H +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 26.7 bits (60), Expect = 2.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYEC 90
C ICG G RL RH + HT EK
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 28/71 (39%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TG++PY C C KAFK KS+L H R
Sbjct: 2 SSGSSGTGQRPYECIEC-------------------GKAFKT---------KSSLICHRR 33
Query: 165 THIGEKPYKCS 175
+H GEKP S
Sbjct: 34 SHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 8e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G +PY+C+ C S L H R HTGEKP S
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TG+RP++C C FK K +L H + HTGE+
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 3e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TG++ YEC C ++ L H+R HTGEKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG++PY C C F S L H
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 37.1 bits (87), Expect = 4e-04
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TG++P++C C + + +L H + SH +K
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH-RRSHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.013
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + G++PY+C C
Sbjct: 2 SSGSSGTGQRPYECIEC 18
Score = 32.9 bits (76), Expect = 0.018
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCK 259
Y+C C S +I H R+HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 366 KHIRTHTGEKPFKCT 380
H R+HTGEKP +
Sbjct: 30 CHRRSHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.56
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TG+R Y+C C K +L H R
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS 34
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
+GEKPY C C K +K + +L H R
Sbjct: 2 SSGSSGSGEKPYKCVEC-------------------GKGYKR---------RLDLDFHQR 33
Query: 165 THIGEKPYKCSS 176
H GEK SS
Sbjct: 34 VHTGEKLSGPSS 45
Score = 53.7 bits (130), Expect = 7e-10
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC+ C + L H R+HTGEK S
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ +GE+P++C C +KR+ LD H + HTGE+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEK Y+C C DL HQR HTGEK
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKPY C C + + L +H
Sbjct: 1 GSSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 40.2 bits (95), Expect = 4e-05
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GEKP+KC C RR LD H Q H +K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC C +++ + H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 31.0 bits (71), Expect = 0.076
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
Y C C R + H R HTGEK +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 29.4 bits (67), Expect = 0.32
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ YKC C R+ L H R+
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV 34
Score = 27.9 bits (63), Expect = 0.93
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + H R HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGE P+ C C K F K+NL H +
Sbjct: 3 SGSSGTGENPFICSEC-------------------GKVFTH---------KTNLIIHQKI 34
Query: 166 HIGEKPYKCSS 176
H GE+P SS
Sbjct: 35 HTGERPSGPSS 45
Score = 52.9 bits (128), Expect = 1e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G P+ C C T + L H +IHTGE+P S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE PF C C F K L +H K HTGER
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGE + C C ++ +L HQ+ HTGE+P
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGE P+ CS C F+ + L H
Sbjct: 1 GSSGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 36.3 bits (85), Expect = 8e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGE PF C+ C + + L H Q H ++
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH-QKIHTGERPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE P+ CS C T K + H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 30.9 bits (71), Expect = 0.087
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+ C C + + +I H + HTGERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
H + HTGE+P +
Sbjct: 30 IHQKIHTGERPSGPS 44
Score = 29.4 bits (67), Expect = 0.30
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE + C C K L +H +I
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI 34
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 24/71 (33%), Positives = 25/71 (35%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY CG C KAF K+NL H R
Sbjct: 3 SGSSGTGEKPYRCGEC-------------------GKAFA---------QKANLTQHQRI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 55.2 bits (134), Expect = 2e-10
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C Q + L +H RIHTGEKP S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y C C A + +L +HQR HTGEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C C F +K L H + HTGE+
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C C F+Q + L H
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C C + +++ L H Q H +K
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.012
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY+C C QK + +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 31.3 bits (72), Expect = 0.055
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTGEKP +
Sbjct: 30 QHQRIHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.59
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + + +H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.65
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C C A+K L H RI
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRI 34
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 55.7 bits (135), Expect = 1e-10
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPY C C +SCL +H R+H+GEKP S
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 52.6 bits (127), Expect = 2e-09
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY+C C K+F+ S L H R
Sbjct: 3 SGSSGTGEKPYNCKEC-------------------GKSFRW---------ASCLLKHQRV 34
Query: 166 HIGEKPYKCS 175
H GEKP S
Sbjct: 35 HSGEKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y C C + + L KHQR H+GEKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P+ CK C +F+ L H + H+GE+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C C F S L H
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+ C C S L H Q H +K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.014
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY C C
Sbjct: 2 SSGSSGTGEKPYNCKEC 18
Score = 32.5 bits (75), Expect = 0.024
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCK 259
Y C C ++S ++KH R H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.087
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
Y C C C+ KH R H+GEKP +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.50
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y C+ C + L H R+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV 34
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-10
Identities = 19/43 (44%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPYKC C S L H RIHTGEKP S
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 4e-10
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C K+F+ S+L H R
Sbjct: 3 SGSSGTGEKPYKCDVC-------------------HKSFRY---------GSSLTVHQRI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 6e-08
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C Y + L HQR HTGEKP
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C +C +F+ +L +H + HTGE+
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C +C F S L H
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP+KC C S +L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 33.6 bits (78), Expect = 0.008
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPYKC C
Sbjct: 2 SSGSSGTGEKPYKCDVC 18
Score = 30.2 bits (69), Expect = 0.14
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
Y C C + H R HTGEKP +
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.23
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C Y S + H R HTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.27
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC+ C + +L VH RI
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI 34
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ K ++C C T S L +H RIHTGEKP S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ S K+ +C C KS+L H R H GEKP SS
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 3e-07
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+ KS++C C ++ L +HQR HTGEKP
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 8e-07
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ + + QC C F K L+ H + HTGE+
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G + K + C C F+ S L H
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 35.2 bits (82), Expect = 0.003
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ + K +C C + + L+ H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 32.5 bits (75), Expect = 0.020
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + K ++C C T K + +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 28.3 bits (64), Expect = 0.78
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+ ++++C C K L H RI
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
+ C+ C ++ + +H R HTGEKP +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+QC+ C S + +H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G K Y C C +++ CL +H R+H+GEKP S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 54.1 bits (131), Expect = 4e-10
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ +GEK + C+ C S L H R H GEKP SS
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 6e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+ + CK C +F R L H + H+GE+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y C C + L KH+R H+GEKP
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEK Y C C FS+ L H
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEK + C C S SR L H + H +K
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLHSGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEK Y C C
Sbjct: 2 SSGSSGTGEKLYNCKEC 18
Score = 31.0 bits (71), Expect = 0.074
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 363 CMKKHIRTHTGEKPFKCT 380
C+ KH R H+GEKP +
Sbjct: 27 CLLKHERLHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C + ++KH R H+GE+P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.37
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y C+ C + +R L H R+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL 34
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C KAF + +L H R
Sbjct: 2 SSGSSGTGEKPYECSVC-------------------GKAFSH---------RQSLSVHQR 33
Query: 165 THIGEKPYKCSS 176
H G+KP SS
Sbjct: 34 IHSGKKPSGPSS 45
Score = 53.3 bits (129), Expect = 8e-10
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C + L H RIH+G+KP S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK YEC C ++ L HQR H+G+KP
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 49.0 bits (118), Expect = 3e-08
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C +C F +Q+L +H + H+G++
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY CS+C FS L H
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 37.1 bits (87), Expect = 6e-04
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C+ C + S R +L H Q H KK
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIHSGKKPSGP 43
Score = 33.3 bits (77), Expect = 0.010
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 162 HMRTHIGEKPYKCSSC 177
+ GEKPY+CS C
Sbjct: 3 SGSSGTGEKPYECSVC 18
Score = 32.5 bits (75), Expect = 0.021
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
H R H+G+KP +
Sbjct: 30 VHQRIHSGKKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.19
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + + H R H+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 28.6 bits (65), Expect = 0.49
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C C + + +L VH RI
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI 34
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KP+KC C Q+ L H+RIHTGEKP S
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 4e-10
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
+GEKP+ C C KAF+ +L +H+R
Sbjct: 2 SSGSSGSGEKPFKCKEC-------------------GKAFRQ---------NIHLASHLR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 6e-08
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ +GE+PF+CK C F++ L H++ HTGE+
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 2e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEK ++C C L H R HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKP+ C C F QN L H
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GEKPFKC C + + L H H +K
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH-LRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.013
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP+KC C Q I + H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 30.2 bits (69), Expect = 0.16
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 366 KHIRTHTGEKPFKCT 380
H+R HTGEKP +
Sbjct: 30 SHLRIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.86
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C + + H+R HTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ +KC+ C + L H+RI
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPYKC C SS L +H +H+GE+P S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C KAF+ S+L H
Sbjct: 2 SSGSSGTGEKPYKCQVC-------------------GKAFRV---------SSHLVQHHS 33
Query: 165 THIGEKPYKCSS 176
H GE+P SS
Sbjct: 34 VHSGERPSGPSS 45
Score = 47.9 bits (115), Expect = 9e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++C++C F+ L H H+GER
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C + L +H H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C +C F +S L H
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C + L H H ++
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGP 43
Score = 32.1 bits (74), Expect = 0.030
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 162 HMRTHIGEKPYKCSSC 177
+ GEKPYKC C
Sbjct: 3 SGSSGTGEKPYKCQVC 18
Score = 30.9 bits (71), Expect = 0.087
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C SS +++H H+GERP
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 29.4 bits (67), Expect = 0.28
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
+H H+GE+P +
Sbjct: 30 QHHSVHSGERPSGPS 44
Score = 27.5 bits (62), Expect = 1.5
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC+ C L H +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV 34
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 21/38 (55%), Positives = 22/38 (57%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C TQ+S L H RIHTGEKP S
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
+GEKPY C C K F S+L H R
Sbjct: 3 SGSSGSGEKPYKCNEC-------------------GKVFTQ---------NSHLTNHWRI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 9e-08
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKPY C+ C F+QNS L H
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
+GEK Y+C C + L H R HTGEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 45.9 bits (110), Expect = 4e-07
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ +GE+P++C C F + L H + HTGE+
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ +GEKP+KC C ++ L +H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 33.6 bits (78), Expect = 0.008
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC+ C TQ + H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 30.5 bits (70), Expect = 0.11
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
H R HTGEKP +
Sbjct: 30 NHWRIHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.47
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S + H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.97
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ YKC C + L H RI
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KP+ C+ C + L +H RIHTGEKP S
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 3e-10
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKP+ C C KAF L H R
Sbjct: 2 SSGSSGTGEKPFDCIDC-------------------GKAFSD---------HIGLNQHRR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+PF C C F L+ H + HTGE+
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK ++C C + L +H+R HTGEKP
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKP+ C C FS + L H
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 37.1 bits (87), Expect = 5e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKPF C C + S L+ H + H +K
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.015
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKP+ C C
Sbjct: 2 SSGSSGTGEKPFDCIDC 18
Score = 32.1 bits (74), Expect = 0.034
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTGEKP +
Sbjct: 30 QHRRIHTGEKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.67
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+ C C + +H R HTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.8
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ + C C + L H RI
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI 34
Score = 25.2 bits (56), Expect = 9.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYEC 90
C CG S L +H HTGEK
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 18/71 (25%), Positives = 19/71 (26%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
G PY C C EK+F K L H R
Sbjct: 3 SGSSGAGVNPYKCSQC-------------------EKSFS---------GKLRLLVHQRM 34
Query: 166 HIGEKPYKCSS 176
H EKP SS
Sbjct: 35 HTREKPSGPSS 45
Score = 54.9 bits (133), Expect = 3e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G+ PYKC C + L H R+HT EKP S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ G P++C C+ +F K L +H + HT E+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
G Y+C C + + L HQR HT EKP
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G G PY CS C+ FS +L H
Sbjct: 1 GSSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 36.7 bits (86), Expect = 7e-04
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + G PYKCS C+ + K+++ H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 36.4 bits (85), Expect = 8e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ G P+KC+ C S S + L H Q H +K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGP 43
Score = 31.7 bits (73), Expect = 0.040
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
Y C C+ + + H R HT EKP +
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 30.6 bits (70), Expect = 0.12
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
G YKC C+ + + K L VH R+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C CE R++ H R HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 22/72 (30%), Positives = 24/72 (33%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C K+F KS+L H R
Sbjct: 2 SSGSSGTGEKPYICNEC-------------------GKSFIQ---------KSHLNRHRR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 54.8 bits (133), Expect = 3e-10
Identities = 20/38 (52%), Positives = 20/38 (52%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPY C C Q S L RH RIHTGEKP S
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P+ C C +F +K L+ H + HTGE+
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-07
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y C C ++ L +H+R HTGEKP
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F Q S L H
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 37.1 bits (87), Expect = 5e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP+ C C S ++ L+ H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY C+ C QK + +H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 30.2 bits (69), Expect = 0.14
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 366 KHIRTHTGEKPFKCT 380
+H R HTGEKP +
Sbjct: 30 RHRRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.56
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y C C + +K L H RI
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI 34
Score = 27.9 bits (63), Expect = 1.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C + S + +H R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C KAF +SNL H +
Sbjct: 3 SGSSGTGEKPYICAEC-------------------GKAFTI---------RSNLIKHQKI 34
Query: 166 HIGEKPYKCSS 176
H +KP SS
Sbjct: 35 HTKQKPSGPSS 45
Score = 54.8 bits (133), Expect = 3e-10
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPY C C T S L +H +IHT +KP S
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y C C ++L KHQ+ HT +KP
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P+ C C F + L H K HT ++
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F+ S L H
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+ C C + + R L H Q H +K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH-QKIHTKQKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY C+ C T + + KH
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 32.9 bits (76), Expect = 0.018
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
Y+C C +R + KH + HT +KP +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C S +IKH + HT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y C C + L H +I
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 2e-10
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TG KPY C C KAF S+L TH
Sbjct: 2 SSGSSGTGVKPYMCNEC-------------------GKAFSV---------YSSLTTHQV 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G+KPY C C + S L H IHTGEKP S
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/44 (34%), Positives = 17/44 (38%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TG K Y C C + + L HQ HTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TG +P+ C C F +L H HTGE+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG KPY C+ C FS S L H
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TG KP+ C C + S +L H QV H +K
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.012
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + G KPY C+ C
Sbjct: 2 SSGSSGTGVKPYMCNEC 18
Score = 30.6 bits (70), Expect = 0.10
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
Y+C C V + H HTGEKP +
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.18
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C S + H HTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.78
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TG + Y C C + +L H I
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI 34
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 2e-10
Identities = 20/44 (45%), Positives = 22/44 (50%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ SGEK FKCE C S L +H R H GEKP SS
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 54.5 bits (132), Expect = 3e-10
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KP+KC C + TQ+S L H R+HTGEKP S
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKP+ C C +F+QNSQL H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEK ++C C + + L HQR HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ +GE+PF+C+ C F + L H + HTGE+
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ +GEKPFKC C ++ L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP+KC C + TQ Q+ H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 30.2 bits (69), Expect = 0.16
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
H R HTGEKP +
Sbjct: 30 SHQRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.58
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ +KCE C + L H R+
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 28.3 bits (64), Expect = 0.65
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C +S++ H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 20/43 (46%), Positives = 22/43 (51%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPYKC C +S L RH RIHTGEKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 4e-10
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C K F+ S L H R
Sbjct: 3 SGSSGTGEKPYKCNEC-------------------GKVFRH---------NSYLSRHQRI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 7e-08
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C + + L +HQR HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F NS L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F+ L H + HTGE+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C L H Q H +K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.021
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPYKC+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 30.2 bits (69), Expect = 0.14
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
Y C C + +H R HTGEKP +
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.29
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C ++S + +H R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.96
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C L H RI
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI 34
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
G+K + C C +K F S+L H R
Sbjct: 3 SGSSGAGKKLFKCNEC-------------------KKTFTQ---------SSSLTVHQRI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 54.4 bits (132), Expect = 3e-10
Identities = 20/38 (52%), Positives = 21/38 (55%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G K +KC C TQSS L H RIHTGEKP S
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ G++ F+C C TF + +L +H + HTGE+
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G G+K + C+ C F+Q+S L H
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 45.6 bits (109), Expect = 5e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
G+K ++C C + L HQR HTGEKP
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 0.001
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + G+K +KC+ C TQ + H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 35.2 bits (82), Expect = 0.003
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ G+K FKC C+ + ++ +L H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 29.8 bits (68), Expect = 0.19
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
G++ +KC C T + +L VH RI
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI 34
Score = 29.8 bits (68), Expect = 0.19
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
H R HTGEKP +
Sbjct: 30 VHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.29
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C+ SS + H R HTGE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 57.1 bits (137), Expect = 3e-10
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 7/108 (6%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQR-----KHTGEKPYSCGHCPYTARSSS 129
K + TG + C C+ +L H + + + ++
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 130 YMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHM--RTHIGEKPYKCS 175
+L +K KC YC +S S +L HM H + S
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Score = 52.8 bits (126), Expect = 9e-09
Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 23/125 (18%)
Query: 155 SKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCR 214
S S+ + + G ++C C +++ H+ T D
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE------------TGHYRDDNH 50
Query: 215 TCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLH 274
D + +++ ++ +C C +F+ Q L +H
Sbjct: 51 ETD-----------NNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Query: 275 IKRHT 279
+ +
Sbjct: 100 MIKTK 104
Score = 40.9 bits (95), Expect = 1e-04
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 5/89 (5%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHIN-----GHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
G+ +F C C+ + H+N + + + L
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 551 TGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
+K C C F L H+
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 39.0 bits (90), Expect = 5e-04
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 538 TQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHDLPD 583
+ S + I TG + C C + +L H+ D
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD 47
Score = 39.0 bits (90), Expect = 6e-04
Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 34/139 (24%)
Query: 267 RKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI-KHKISICQNCGLILSTITEE 325
+ L+ TG ++C+ C L VH+ H
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN-------- 54
Query: 326 LLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYS 385
+ + + + +K KC +C +S
Sbjct: 55 -------------------------NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHS 89
Query: 386 ASRRDTLDHHIQVSHLYKK 404
L H+ + Y+K
Sbjct: 90 FESLQDLSVHMIKTKHYQK 108
Score = 35.1 bits (80), Expect = 0.013
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 511 KSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNS 569
+ + + G ++C CS L HM TG D +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKRW 60
Score = 34.7 bits (79), Expect = 0.016
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 364 MKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLY----KKRFQCPVCDYRCTKKY 419
K + TG F+C C + L H+ + Y + + +K
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 420 NLQMHALTKH 429
+L +
Sbjct: 67 SLLEMEGKED 76
Score = 32.4 bits (73), Expect = 0.13
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 349 YVCYTCDYHTGVRECMKKHIR-----THTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYK 403
+ C C + H+ + R+S R+ +L + +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM-EGKEDAQ 78
Query: 404 KRFQCPVCDYRCTKKYNLQMH 424
K +C C + +L +H
Sbjct: 79 KVLKCMYCGHSFESLQDLSVH 99
Score = 30.9 bits (69), Expect = 0.44
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 59 KNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKH--QRKHTGEKPY 116
+ + L K +K +C +C + DL H + KH +
Sbjct: 52 TDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 3e-10
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KP++C C + TQ+S L H R+HTGEKP S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 9e-10
Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
+GEKP+ C C K F S+L +H R
Sbjct: 2 SSGSSGSGEKPFQCEEC-------------------GKRFTQ---------NSHLHSHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 VHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ +GE+PFQC+ C F + L H + HTGE+
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKP+ C C +F+QNS L H
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEK ++C C + + L HQR HTGEKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GEKPF+C C ++ L H Q H +K
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.007
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP++C C + TQ + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 29.8 bits (68), Expect = 0.18
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
H R HTGEKP +
Sbjct: 30 SHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.47
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+QC C +S + H R HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.2
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ ++CE C + L H R+
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV 34
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGE+ Y C C KAF KS L H R
Sbjct: 2 SSGSSGTGERHYECSEC-------------------GKAFAR---------KSTLIMHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 6e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G + Y+C C + S L H RIHTGEKP S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGER ++C C F RK TL +H + HTGE+
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 3e-08
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGE+ YEC C A ++ L HQR HTGEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 2e-07
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGE+ Y CS C F++ S L H
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 36.3 bits (85), Expect = 9e-04
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGE+ ++C+ C + +R+ TL H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 34.0 bits (79), Expect = 0.007
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE+ Y+CS C +K + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 31.7 bits (73), Expect = 0.041
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
H R HTGEKP +
Sbjct: 30 MHQRIHTGEKPSGPSS 45
Score = 30.5 bits (70), Expect = 0.12
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C S +I H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGER Y+C C ARK TL +H RI
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRI 34
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
+GEKPY C C K F KS L H RT
Sbjct: 3 SGSSGSGEKPYGCNEC-------------------GKTFSQ---------KSILSAHQRT 34
Query: 166 HIGEKPYKCS 175
H GEKP S
Sbjct: 35 HTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 18/38 (47%), Positives = 19/38 (50%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPY C C +Q S L H R HTGEKP S
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ +GE+P+ C C TF +K L H + HTGE+
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEK Y C C + ++ L HQR HTGEKP
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKPY C+ C FSQ S L H
Sbjct: 1 GSSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 36.4 bits (85), Expect = 8e-04
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GEKP+ C C + S++ L H Q +H +K
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH-QRTHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY C+ C +QK + H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 31.0 bits (71), Expect = 0.079
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 366 KHIRTHTGEKPFKCT 380
H RTHTGEKP +
Sbjct: 30 AHQRTHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.33
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C S + H R HTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.47
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ Y C C T ++K L H R
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT 34
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G K YKC C +++S L +H +IHTGEKP S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 19/72 (26%), Positives = 20/72 (27%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEK Y C C K F S L H +
Sbjct: 2 SSGSSGTGEKRYKCNEC-------------------GKVFSR---------NSQLSQHQK 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 6e-08
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+ ++C C F R L H K HTGE+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y+C C + + L +HQ+ HTGEKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 3e-07
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEK Y C+ C FS+NSQL H
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEK +KC C SR L H Q H +K
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.021
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEK YKC+ C
Sbjct: 2 SSGSSGTGEKRYKCNEC 18
Score = 31.0 bits (71), Expect = 0.088
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H + HTGEKP +
Sbjct: 30 QHQKIHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.37
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C +R L H +I
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI 34
Score = 28.3 bits (64), Expect = 0.70
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S++ +H + HTGE+P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKP+ CG C K++ + +L H R
Sbjct: 2 SSGSSGTGEKPFKCGEC-------------------GKSYNQ---------RVHLTQHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 VHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 6e-10
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KP+KC C Q L +H R+HTGEKP S
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+PF+C C ++ ++ L H + HTGE+
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 8e-08
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK ++C C L +HQR HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKP+ C C ++Q L H
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 37.9 bits (89), Expect = 3e-04
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKPFKC C S ++R L H Q H +K
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.009
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP+KC C Q++ + +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 31.3 bits (72), Expect = 0.059
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTGEKP +
Sbjct: 30 QHQRVHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.59
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C + +H R HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ +KC C + ++ L H R+
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV 34
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C +Q++ L +H R+HTGEKP S
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C KAF ++L H R
Sbjct: 2 SSGSSGTGEKPYECKEC-------------------GKAFSQ---------TTHLIQHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 VHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 5e-08
Identities = 18/44 (40%), Positives = 20/44 (45%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK YEC C + L +HQR HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P++CK C F + L H + HTGE+
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C C FSQ + L H
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 37.1 bits (87), Expect = 5e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C C + S+ L H Q H +K
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.023
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY+C C
Sbjct: 2 SSGSSGTGEKPYECKEC 18
Score = 31.3 bits (72), Expect = 0.056
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTGEKP +
Sbjct: 30 QHQRVHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.50
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C ++ +I+H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.7
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C+ C ++ L H R+
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV 34
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 54.5 bits (132), Expect = 3e-10
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 136 KVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
SGEK F C C + SKS L H +TH EKP SS
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 521 GHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G G KP+ C C + S L H + H EKP S
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEK + C C + ++ L HQ+ H EKP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+GE+PF C C+ F K L +H + H E+
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 548 RIHTGEKPYACSLCDLKFSQNSQLKYH 574
+GEKP+ CS C+ FS S L H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 33.3 bits (77), Expect = 0.012
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 369 RTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+GEKPF C+ C + S + L H Q +H +K
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGP 41
Score = 31.4 bits (72), Expect = 0.054
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+ C CE S ++ H + H E+P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 31.0 bits (71), Expect = 0.069
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 367 HIRTHTGEKPFKCT 380
H +TH EKP +
Sbjct: 29 HQQTHAEEKPSGPS 42
Score = 29.4 bits (67), Expect = 0.26
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 164 RTHIGEKPYKCSSCDFQATQKIQVKKH 190
GEKP+ CS C+ + K + H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 29.0 bits (66), Expect = 0.33
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 278 HTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ + C C+ + K L VH +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQT 32
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 3e-10
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C KAF +S+L TH
Sbjct: 2 SSGSSGTGEKPYECNQC-------------------GKAFSV---------RSSLTTHQA 33
Query: 165 THIGEKPYKCSS 176
H G+KP SS
Sbjct: 34 IHTGKKPSGPSS 45
Score = 53.7 bits (130), Expect = 6e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C + S L H IHTG+KP S
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK YEC C + + L HQ HTG+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 47.9 bits (115), Expect = 6e-08
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F + +L H HTG++
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C FS S L H
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 37.1 bits (87), Expect = 5e-04
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C C + S R +L H Q H KK
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGP 43
Score = 32.5 bits (75), Expect = 0.021
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY+C+ C
Sbjct: 2 SSGSSGTGEKPYECNQC 18
Score = 31.7 bits (73), Expect = 0.035
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 366 KHIRTHTGEKPFKCTH 381
H HTG+KP +
Sbjct: 30 THQAIHTGKKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.39
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCK 259
Y+C C S + H HTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 28.3 bits (64), Expect = 0.78
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C C + + +L H I
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI 34
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 3e-10
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 28/71 (39%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C KAF K++L H +
Sbjct: 2 SSGSSGTGEKPYECKVCS-------------------KAFTQ---------KAHLAQHQK 33
Query: 165 THIGEKPYKCS 175
TH GEKP S
Sbjct: 34 THTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 7e-10
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPY+C CS TQ + L +H + HTGEKP S
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++CK+C F +K L H K HTGE+
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK YEC C+ + L +HQ+ HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C +C F+Q + L H
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C C + +++ L H Q +H +K
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.006
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPY+C C TQK + +H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 366 KHIRTHTGEKPFKCT 380
+H +THTGEKP +
Sbjct: 30 QHQKTHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.34
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCK 259
Y+C C + + +H + HTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.87
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C+ C +K L H +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT 34
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 3e-10
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KP++C C + S L +H+R H P S
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 53.4 bits (129), Expect = 8e-10
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ +GEK F+C+ C + +L H+R+H P SS
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+PFQCK C F +L H++ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 47.2 bits (113), Expect = 1e-07
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK ++C C ++ L KH R H P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 42.2 bits (100), Expect = 8e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
G TGEKP+ C C + FS + L HL +
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 37.2 bits (87), Expect = 5e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKPF+C C + S +L H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH 31
Score = 32.9 bits (76), Expect = 0.014
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP++C C + + KH
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKH 31
Score = 32.6 bits (75), Expect = 0.021
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
+ C C + + KH+R+H P +
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 32.2 bits (74), Expect = 0.028
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+QC C + +S + KH+R+H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ ++C+ C + +L H+R
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 4e-10
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C + S L +H HT EKP S
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 51.8 bits (125), Expect = 4e-09
Identities = 18/72 (25%), Positives = 19/72 (26%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
GEKPY C C K+F L H
Sbjct: 2 SSGSSGEGEKPYQCSEC-------------------GKSFSG---------SYRLTQHWI 33
Query: 165 THIGEKPYKCSS 176
TH EKP SS
Sbjct: 34 THTREKPSGPSS 45
Score = 46.8 bits (112), Expect = 2e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ GE+P+QC C +F L H HT E+
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 78 HFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
GEK Y+C C + L +H HT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G GEKPY CS C FS + +L H
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ GEKP++C+ C S S L H ++H +K
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGP 43
Score = 32.1 bits (74), Expect = 0.026
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY+CS C
Sbjct: 2 SSGSSGEGEKPYQCSEC 18
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
YQC C S R+ +H HT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 29.4 bits (67), Expect = 0.24
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
+H THT EKP +
Sbjct: 30 QHWITHTREKPSGPS 44
Score = 27.9 bits (63), Expect = 0.99
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE+ Y+C C + + L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
Score = 25.6 bits (57), Expect = 5.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYEC 90
C CG SG++RL +H++ HT EK
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 4e-10
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C K F S+L H R
Sbjct: 2 SSGSSGTGEKPYKCNEC-------------------GKVFTQ---------NSHLANHQR 33
Query: 165 THIGEKPYKCSS 176
H G KP SS
Sbjct: 34 IHTGVKPSGPSS 45
Score = 54.1 bits (131), Expect = 6e-10
Identities = 20/38 (52%), Positives = 21/38 (55%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C TQ+S L H RIHTG KP S
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F+QNS L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 47.9 bits (115), Expect = 8e-08
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F + L H + HTG +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C + L HQR HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C ++ L +H Q H K
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH-QRIHTGVKPSGP 43
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC+ C TQ + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 29.4 bits (67), Expect = 0.26
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 366 KHIRTHTGEKPFKCT 380
H R HTG KP +
Sbjct: 30 NHQRIHTGVKPSGPS 44
Score = 28.6 bits (65), Expect = 0.60
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S + H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 27.9 bits (63), Expect = 0.93
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C + L H RI
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI 34
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 4e-10
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ SGE+ FKC C +S+L H+R H EK SS
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 53.3 bits (129), Expect = 1e-09
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G +P+KC C + S L H+R+H+ EK S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ +GERPF+C C F R+ L H++ H+ E++
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GE+ ++C C + L H R H+ EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GE+P+ C+ C F + S L H
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GE+PFKC C RR L H H +K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH-LRLHSREKSSGP 43
Score = 32.1 bits (74), Expect = 0.026
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE+P+KC+ C ++ + H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 29.8 bits (68), Expect = 0.22
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 366 KHIRTHTGEKPFKCT 380
H+R H+ EK +
Sbjct: 30 GHLRLHSREKSSGPS 44
Score = 29.0 bits (66), Expect = 0.37
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GER +KC C R+ L H+R+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
Score = 28.3 bits (64), Expect = 0.61
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C S + H+R H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 4e-10
Identities = 21/38 (55%), Positives = 22/38 (57%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C TQ+S L RH IHTGEKP S
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C K F S+L H
Sbjct: 2 SSGSSGTGEKPYKCNEC-------------------GKVFTQ---------NSHLARHRG 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 9e-08
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y+C C + L +H+ HTGEKP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F + L H HTGE+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F+QNS L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 37.1 bits (87), Expect = 6e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP+KC C ++ L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 33.6 bits (78), Expect = 0.010
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC+ C TQ + +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 31.3 bits (72), Expect = 0.053
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H HTGEKP +
Sbjct: 30 RHRGIHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.95
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S + +H HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.5
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C + L H I
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI 34
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 4e-10
Identities = 21/38 (55%), Positives = 23/38 (60%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C +Q+S L RH RIHTGEKP S
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 5e-10
Identities = 22/72 (30%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C KAF S L H R
Sbjct: 2 SSGSSGTGEKPYKCNEC-------------------GKAFSQ---------TSKLARHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 49.1 bits (118), Expect = 3e-08
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y+C C + + L +HQR HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C FSQ S+L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F + L H + HTGE+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C + S+ L H Q H +K
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH-QRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.012
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC+ C +Q ++ +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 31.7 bits (73), Expect = 0.042
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTGEKP +
Sbjct: 30 RHQRIHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.30
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S++ +H R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.94
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C ++ L H RI
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRI 34
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 54.0 bits (131), Expect = 4e-10
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYA 557
G KPY C C + L H+RIHTG P +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 54.0 bits (131), Expect = 5e-10
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 134 HLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPY 172
GEK + CE C L++H+R H G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTY 284
+ GE+P+ C+IC + F+ QTL H++ HTG
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYS 117
GEK Y C C + + LK H R HTG P S
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 546 HMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
GEKPY C +C +F LK HL
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 36.7 bits (86), Expect = 6e-04
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHI 396
+ GEKP+ C C TL H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 36.7 bits (86), Expect = 7e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 162 HMRTHIGEKPYKCSSCDFQATQKIQVKKHVLI 193
+ GEKPY C C + +K H+ I
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 32.1 bits (74), Expect = 0.027
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPF 377
Y C C + +K H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 31.3 bits (72), Expect = 0.049
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE+ Y CE C TL H+RI
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 28.2 bits (64), Expect = 0.61
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPF 256
Y C C + + H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 4e-10
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G + Y+C C Q S L H RIH GEKP S
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 54.1 bits (131), Expect = 4e-10
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGE+ Y C C KAF KS L H R
Sbjct: 2 SSGSSGTGERHYECSEC-------------------GKAFIQ---------KSTLSMHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHRGEKPSGPSS 45
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGER ++C C F +K TL +H + H GE+
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.1 bits (118), Expect = 3e-08
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGE+ YEC C ++ L HQR H GEKP
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGE+ Y CS C F Q S L H
Sbjct: 1 GSSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 36.0 bits (84), Expect = 0.001
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGE+ ++C+ C + ++ TL H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE+ Y+CS C QK + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 31.7 bits (73), Expect = 0.042
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 328 EHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTH 381
+G ER Y C C + + H R H GEKP +
Sbjct: 2 SSGSSGTG-ERH---------YECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.20
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGER Y+C C +K TL +H RI
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI 34
Score = 29.0 bits (66), Expect = 0.33
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + S + H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 5e-10
Identities = 21/38 (55%), Positives = 22/38 (57%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C TQ+S L RH IHTGEKP S
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ +GEK +KC C S+L H H GEKP SS
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 48.6 bits (117), Expect = 4e-08
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y+C C + L +H+ HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 48.2 bits (116), Expect = 6e-08
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F+QNS L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 45.5 bits (109), Expect = 5e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F + L H HTGE+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP+KC C ++ L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 32.8 bits (76), Expect = 0.015
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC+ C TQ + +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 31.7 bits (73), Expect = 0.044
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H HTGEKP +
Sbjct: 30 RHRGIHTGEKPSGPSS 45
Score = 28.2 bits (64), Expect = 0.74
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S +++H HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C + L H I
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI 34
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 5e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPYKC C + + L H RIHTG +P S
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ SGEK +KC C + + ++L H R H G +P SS
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ +GE+P++C C F R L+ H + HTG R
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKPY CS C F +++ L H
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEK Y+C C L +H+R HTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 36.7 bits (86), Expect = 6e-04
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ +GEKP+KC+ C + R L+ H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 33.6 bits (78), Expect = 0.010
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPYKCS C
Sbjct: 2 SSGSSGSGEKPYKCSEC 18
Score = 30.2 bits (69), Expect = 0.17
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
+H R HTG +P +
Sbjct: 30 EHRRIHTGYRPSGPS 44
Score = 28.6 bits (65), Expect = 0.47
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + + +H R HTG RP
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 28.2 bits (64), Expect = 0.74
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ YKC C R L H RI
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI 34
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 5e-10
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGE PY C C KAF K L +H RT
Sbjct: 3 SGSSGTGENPYECHEC-------------------GKAFSR---------KYQLISHQRT 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HAGEKPSGPSS 45
Score = 52.1 bits (126), Expect = 2e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G PY+C C ++ L H R H GEKP S
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE P++C C F RK L H + H GE+
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 16/44 (36%), Positives = 18/44 (40%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGE YEC C + + L HQR H GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGE PY C C FS+ QL H
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 36.7 bits (86), Expect = 6e-04
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGE P++C C + SR+ L H Q +H +K
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH-QRTHAGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.011
Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 14/39 (35%)
Query: 357 HTGVR-----ECMK---------KHIRTHTGEKPFKCTH 381
TG EC K H RTH GEKP +
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.014
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE PY+C C ++K Q+ H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 30.2 bits (69), Expect = 0.13
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C+ C ++I H R H GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.49
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE Y+C C +RK L H R
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT 34
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 5e-10
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C + + L +H R+H+GEKP S
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKPY C C KAF ++L H R
Sbjct: 3 SGSSGTGEKPYECDVC-------------------RKAFSH---------HASLTQHQRV 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HSGEKPSGPSS 45
Score = 49.4 bits (119), Expect = 2e-08
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK YEC C ++ L +HQR H+GEKP
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 2e-07
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C +C F +L H + H+GE+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C +C FS ++ L H
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP++C CR + S +L H Q H +K
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH-QRVHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.015
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY+C C
Sbjct: 2 SSGSSGTGEKPYECDVC 18
Score = 32.1 bits (74), Expect = 0.029
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R H+GEKP +
Sbjct: 30 QHQRVHSGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.16
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C + + + +H R H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.77
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ Y+C+ C + +L H R+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV 34
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 5e-10
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ GEK +KC+ C S+L+TH R H GEKP SS
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 54.1 bits (131), Expect = 6e-10
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+G K YKC C + +QSS L H R+HTGEKP S
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ GE+ ++C +C F + L H + HTGE+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
GEK Y+C C + + + L+ HQR HTGEKP
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G GEK Y C +C +FSQ+S L+ H
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ GEK +KC C S+ L H Q H +K
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.006
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + +GEK YKC C + +Q ++ H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 30.2 bits (69), Expect = 0.14
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
H R HTGEKP +
Sbjct: 30 THQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.28
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C SS + H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.0
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE+ YKC+ C ++ L H R+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV 34
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 5e-10
Identities = 21/38 (55%), Positives = 22/38 (57%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C TQ+S L RH IHTGEKP S
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 19/71 (26%), Positives = 21/71 (29%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TG+KPY C C K F S+L H
Sbjct: 3 SGSSGTGKKPYKCNEC-------------------GKVFT---------QNSHLARHRGI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TG+K Y+C C + L +H+ HTGEKP
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 3e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TG++P++C C F + L H HTGE+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG+KPY C+ C F+QNS L H
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TG+KP+KC C ++ L H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 33.2 bits (77), Expect = 0.011
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + G+KPYKC+ C TQ + +H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 31.3 bits (72), Expect = 0.065
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H HTGEKP +
Sbjct: 30 RHRGIHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.90
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S + +H HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TG++ YKC C + L H I
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI 34
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 5e-10
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPY+C C +Q+S L RH R+HTGEKP S
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 6e-10
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TG KPY C C KAF S L H R
Sbjct: 2 SSGSSGTGGKPYQCNEC-------------------GKAFSQ---------TSKLARHQR 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 VHTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 7e-08
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TG K Y+C C + + L +HQR HTGEKP
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 9e-08
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TG +P+QC C F + L H + HTGE+
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG KPY C+ C FSQ S+L H
Sbjct: 1 GSSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TG KP++C C + S+ L H Q H +K
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH-QRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.018
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + G KPY+C+ C
Sbjct: 2 SSGSSGTGGKPYQCNEC 18
Score = 31.7 bits (73), Expect = 0.042
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTGEKP +
Sbjct: 30 RHQRVHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.17
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
YQC C +S++ +H R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.88
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TG + Y+C C ++ L H R+
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV 34
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 6e-10
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TGEKP C C KAF KS L H RT
Sbjct: 3 SGSSGTGEKPCKCTEC-------------------GKAFCW---------KSQLIMHQRT 34
Query: 166 HIGEKPYKCSS 176
H+ +K SS
Sbjct: 35 HVDDKHSGPSS 45
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KP KC C S L H R H +K S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 47.6 bits (114), Expect = 1e-07
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK +C C +++ L HQR H +K
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P +C C F K L +H + H ++
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKP C+ C F SQL H
Sbjct: 1 GSSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 36.8 bits (86), Expect = 6e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP KCT C + + L H Q +H+ K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGP 43
Score = 32.5 bits (75), Expect = 0.019
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKP KC+ C K Q+ H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 31.4 bits (72), Expect = 0.050
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+C C + S++I H R H ++
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 29.8 bits (68), Expect = 0.17
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
C C + + H RTH +K +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 27.1 bits (61), Expect = 1.7
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ KC C K L +H R
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT 34
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 6e-10
Identities = 19/71 (26%), Positives = 21/71 (29%), Gaps = 28/71 (39%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
TG K + C C KAF KS L H +
Sbjct: 3 SGSSGTGGKHFECTEC-------------------GKAFTR---------KSTLSMHQKI 34
Query: 166 HIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 HTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 6e-10
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G K ++C C T+ S L H +IHTGEKP S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TG + F+C C F RK TL +H K HTGE+
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TG K +EC C ++ L HQ+ HTGEKP
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 1e-06
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG K + C+ C F++ S L H
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TG K F+CT C + +R+ TL H Q H +K
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.012
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + G K ++C+ C T+K + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 31.3 bits (72), Expect = 0.064
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
H + HTGEKP +
Sbjct: 30 MHQKIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.21
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TG + ++C C RK TL +H +I
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI 34
Score = 28.3 bits (64), Expect = 0.64
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C S + H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.6 bits (130), Expect = 6e-10
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C ++S L RH IHTGEKP S
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 20/72 (27%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C K F+ S+L H
Sbjct: 2 SSGSSGTGEKPYKCHEC-------------------GKVFRR---------NSHLARHQL 33
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 34 IHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F+R L H HTGE+
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C C F +NS L H
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK Y+C C + L +HQ HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 0.001
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C R L H Q+ H +K
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.014
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPYKC C
Sbjct: 2 SSGSSGTGEKPYKCHEC 18
Score = 29.0 bits (66), Expect = 0.34
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 366 KHIRTHTGEKPFKCT 380
+H HTGEKP +
Sbjct: 30 RHQLIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.95
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C R L H I
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI 34
Score = 27.4 bits (62), Expect = 1.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C+ C +S + +H HTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 7e-10
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC C TQ+S L RH R+HTG KP S
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKPY C C K F S+L H R
Sbjct: 2 SSGSSGTGEKPYKCNEC-------------------GKVFTQ---------NSHLARHRR 33
Query: 165 THIGEKPYKCSS 176
H G KP SS
Sbjct: 34 VHTGGKPSGPSS 45
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y+C C + L +H+R HTG KP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F + L H + HTG +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C+ C F+QNS L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP+KC C ++ L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 33.3 bits (77), Expect = 0.010
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GEKPYKC+ C TQ + +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 31.7 bits (73), Expect = 0.042
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTG KP +
Sbjct: 30 RHRRVHTGGKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.66
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S + +H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C + L H R+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV 34
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 7e-10
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G +P+KC C QS+ L +H RIHTGEKP S
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ +GE+ KC C S ++L H R H GEKP SS
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 9e-08
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGE+ ++C C L +HQR HTGEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGERP +C C +F + L H + HTGE+
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGE+P+ C+ C F Q++ L H
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGE+P KC C S + L H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 33.6 bits (78), Expect = 0.010
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE+P+KC+ C Q + +H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 31.3 bits (72), Expect = 0.063
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTGEKP +
Sbjct: 30 QHQRIHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.24
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C + S+ +I+H R HTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.88
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGER +KC C + + L H RI
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRI 34
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 8e-10
Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGEKP+ C C K+F S L H R
Sbjct: 2 SSGSSGTGEKPHECREC-------------------GKSFSF---------NSQLIVHQR 33
Query: 165 THIGEKPYKCSS 176
H GE P SS
Sbjct: 34 IHTGENPSGPSS 45
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KP++C C + +S L H RIHTGE P S
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK +EC C ++ + L HQR HTGE P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKP+ C C FS NSQL H
Sbjct: 1 GSSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE+P +C+ C +F L +H + HTGE
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ TGEKP +C C S S L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 32.9 bits (76), Expect = 0.016
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKP++C C
Sbjct: 2 SSGSSGTGEKPHECREC 18
Score = 31.4 bits (72), Expect = 0.050
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
++C C ++S++I H R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 31.4 bits (72), Expect = 0.050
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 366 KHIRTHTGEKPFKCTH 381
H R HTGE P +
Sbjct: 30 VHQRIHTGENPSGPSS 45
Score = 28.3 bits (64), Expect = 0.73
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ ++C C + + L VH RI
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI 34
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 53.7 bits (130), Expect = 8e-10
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKR-HTGERTYKCEFC 289
+ + +P+ C+ C F R L+ HIK+ HT ER +KC+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 53.4 bits (129), Expect = 1e-09
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHM-RIHTGEKPYACSLCDLKFSQ 567
KPY C C ++ L H+ ++HT E+P+ C + S
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 50.7 bits (122), Expect = 9e-09
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHM-RTHIGEKPYKCSSC 177
+ S K + C+ C +L H+ + H E+P+KC
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVC 411
+ + KP+ C C SR D L+ HI+ H ++ +C V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKH-QRKHTGEKPYSCGHC 121
+ K Y C C + + L H ++ HT E+P+ C
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 39.5 bits (93), Expect = 8e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
G + KPY C C FS+ L H+ H
Sbjct: 1 GSSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 34.9 bits (81), Expect = 0.004
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRN-HTGERPFQCKICDSTF 265
Y C SC + HI+ HT ERP +C++ S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 53.4 bits (129), Expect = 8e-10
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 134 HLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
SGEK+ C+ C + S LR H R H+GEK SS
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 48.4 bits (116), Expect = 6e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G K + C C S L H R+H GEK S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GEKS+ C C Y + L+ HQR H GEK
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 42.2 bits (100), Expect = 8e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ +GE+ C C F L +H + H GE+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 42.2 bits (100), Expect = 9e-06
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEK + C C F S L+ H
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 32.2 bits (74), Expect = 0.028
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GEK C C + L H Q H+ +K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVHMGEKCSGP 43
Score = 31.4 bits (72), Expect = 0.060
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 162 HMRTHIGEKPYKCSSC 177
+ GEK + C C
Sbjct: 3 SGSSGSGEKSHTCDEC 18
Score = 29.1 bits (66), Expect = 0.35
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+++ C+ C L +H R+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
Score = 26.4 bits (59), Expect = 3.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+ C C + Y S + H R H GE+
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 25.2 bits (56), Expect = 7.9
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
+ C C + ++ H R H GEK +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KPY+C C Q L +H R+HTGE+ S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 50.6 bits (122), Expect = 9e-09
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 28/72 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
+G+KPY C C K F +L H R
Sbjct: 2 SSGSSGSGKKPYECKEC-------------------RKTFIQ---------IGHLNQHKR 33
Query: 165 THIGEKPYKCSS 176
H GE+ SS
Sbjct: 34 VHTGERSSGPSS 45
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ +G++P++CK C TF + L+ H + HTGER+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+G+K YEC C L +H+R HTGE+
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +G+KPY C C F Q L H
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +G+KP++C CR + + L+ H + H ++
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTGERSSGP 43
Score = 32.5 bits (75), Expect = 0.023
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + G+KPY+C C Q + +H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 29.8 bits (68), Expect = 0.22
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCK 259
Y+C C + + +H R HTGER
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 28.3 bits (64), Expect = 0.77
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+G++ Y+C+ C T + L H R+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.0 bits (128), Expect = 1e-09
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
G KPYKC+ C +S +H R+HTG++P S
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 52.6 bits (127), Expect = 2e-09
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ +GEK +KC C + S+ H R H G++P SS
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 48.3 bits (116), Expect = 6e-08
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGH 120
TGEK Y+C C + +HQR HTG++P
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 46.8 bits (112), Expect = 2e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+P++C C F + H + HTG+R
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGEKPY C C F NS H
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 36.4 bits (85), Expect = 8e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKP+KC C + + H Q H ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQRPSGP 43
Score = 33.3 bits (77), Expect = 0.011
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPYKC C
Sbjct: 2 SSGSSGTGEKPYKCMEC 18
Score = 30.6 bits (70), Expect = 0.089
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 366 KHIRTHTGEKPFKCTH 381
+H R HTG++P +
Sbjct: 30 QHQRLHTGQRPSGPSS 45
Score = 30.2 bits (69), Expect = 0.14
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +S +H R HTG+RP
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 27.9 bits (63), Expect = 0.99
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE+ YKC C + H R+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34
Score = 25.2 bits (56), Expect = 7.8
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 62 CCICGHVESGAWRLKRHFLKHTGEKSYEC 90
C CG +H HTG++
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 53.6 bits (128), Expect = 1e-09
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 116 YSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
Y C C + S + H++ H+ + + C YC++S +K NL HM++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 51.3 bits (122), Expect = 7e-09
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 499 RFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
+++C C K +++HI H ++PY C +C++ L +HM+ K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 50.5 bits (120), Expect = 1e-08
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 88 YECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
Y C C + + LKKH R HT +PY C +C ++ ++ + H+K + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 49.7 bits (118), Expect = 3e-08
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 528 YKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
Y C C + + S L +H+R HT +PY C+ C+ F L H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 49.3 bits (117), Expect = 3e-08
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+Y C C S + KHIR HT RP+ C C+ +FK K L H+K +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 48.9 bits (116), Expect = 4e-08
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 144 FKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHV 191
+ CE C S L+ H+RTH +PY C+ C+F K + KH+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 45.5 bits (107), Expect = 7e-07
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
Y+C C +KKHIRTHT +P+ CT+C +S + L H++ KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 44.3 bits (104), Expect = 2e-06
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
C CG LK+H HT + Y C +C + + +L KH + K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 38.2 bits (88), Expect = 3e-04
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 256 FQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+ C+ C K+ L HI+ HT R Y C +C+++ K L H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 29.7 bits (66), Expect = 0.33
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 377 FKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALT 427
+ C C + L HI+ +H + + C C++ K NL H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 52.8 bits (127), Expect = 2e-09
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 512 SGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACSL--CDLKFSQ 567
S I+ + C H C +SS L H R HTGEKP++CS C+ +F++
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 568 NSQLKYHLTT 577
+ +L H T
Sbjct: 62 SDELSRHRRT 71
Score = 50.5 bits (121), Expect = 2e-08
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 240 SSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGERTYKCEF--CDYTAAR 295
SS + + R C C T+ + L H + HTGE+ + C + C+ AR
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 296 KDTLGVHVRI 305
D L H R
Sbjct: 62 SDELSRHRRT 71
Score = 45.8 bits (109), Expect = 8e-07
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 103 LKKHQRKHTGEKPYSCGH--CPYTARSSSYMLTHLKVHSGEKAFKCEY--CSYSSYSKSN 158
Q + + + C H C T SS++ H + H+GEK F C + C
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 159 LRTHMRTH 166
L H RTH
Sbjct: 65 LSRHRRTH 72
Score = 43.5 bits (103), Expect = 6e-06
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 128 SSYMLTHLKVHSGEKAFKCEY--CSYSSYSKSNLRTHMRTHIGEKPYKCS 175
SS S ++ C + C + + S+L+ H RTH GEKP+ CS
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
Score = 41.2 bits (97), Expect = 3e-05
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 71 GAWRLKRHFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSCGH--CPYTAR 126
G+ + + +S+ C C + LK H R HTGEKP+SC C
Sbjct: 1 GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
Query: 127 SSSYMLTHLKVH 138
S + H + H
Sbjct: 61 RSDELSRHRRTH 72
Score = 38.5 bits (90), Expect = 3e-04
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 334 SGKERPDSSTDKSFNYVCY--TCDYHTGVRECMKKHIRTHTGEKPFKCTH--CRYSASRR 389
SG P + + +++C C +K H RTHTGEKPF C+ C +R
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 390 DTLDHH 395
D L H
Sbjct: 63 DELSRH 68
Score = 38.1 bits (89), Expect = 4e-04
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 505 CNYHTYKSGHMRQHINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIH 550
C +KS H++ H H G KP+ C C + +S L RH R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.4 bits (82), Expect = 0.003
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 240 SSRMIKHIRNHTGERPFQCKI--CDSTFKRKQTLDLHIKRH 278
SS + H R HTGE+PF C C+ F R L H + H
Sbjct: 32 SSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 3e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 134 HLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
SGE+ + C C + S+L H++ H EK SS
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 51.7 bits (125), Expect = 3e-09
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G +PY C C + S L H++ H EK S
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ +GERP+ C C F R L H+KRH E++
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSC 118
+GE+ Y C C + L +H ++H EK
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GE+PY C+ C F ++S L H
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 37.1 bits (87), Expect = 6e-04
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GE+P+ C C + R L H H +K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH-LKRHFREKSSGP 43
Score = 32.1 bits (74), Expect = 0.029
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 14/38 (36%)
Query: 357 HTGVR-----ECMK---------KHIRTHTGEKPFKCT 380
+G R EC K +H++ H EK +
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 30.9 bits (71), Expect = 0.070
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 162 HMRTHIGEKPYKCSSC 177
+ GE+PY C+ C
Sbjct: 3 SGSSGSGERPYGCNEC 18
Score = 29.8 bits (68), Expect = 0.21
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C + S +I+H++ H E+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 28.3 bits (64), Expect = 0.82
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GER Y C C R L H++
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 18/69 (26%), Positives = 19/69 (27%), Gaps = 28/69 (40%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
+GEKPY C C KAF KS L H RT
Sbjct: 3 SGSSGSGEKPYECNEC-------------------GKAFIW---------KSLLIVHERT 34
Query: 166 HIGEKPYKC 174
H G
Sbjct: 35 HAGVSGPSS 43
Score = 51.4 bits (124), Expect = 4e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
+GEK YEC C +++ L H+R H G S G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYAC 558
G KPY+C C S L H R H G +
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G +GEKPY C+ C F S L H
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 44.4 bits (106), Expect = 1e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ +GE+P++C C F K L +H + H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ +GEKP++C C + + L H + +H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GEKPY+C+ C
Sbjct: 2 SSGSSGSGEKPYECNEC 18
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C ++ S +I H R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 28.7 bits (65), Expect = 0.44
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 366 KHIRTHTGEKPFKC 379
H RTH G
Sbjct: 30 VHERTHAGVSGPSS 43
Score = 27.1 bits (61), Expect = 1.7
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ Y+C C K L VH R
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT 34
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 51.4 bits (124), Expect = 4e-09
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYA 557
+G G + Y+C C Q L H RIHTG P +
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 44.9 bits (107), Expect = 8e-07
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYS 117
+G++ YEC C + L H+R HTG P S
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 42.6 bits (101), Expect = 5e-06
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTY 284
+G+R ++C+ C +F++K +L LH + HTG
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 42.2 bits (100), Expect = 6e-06
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 138 HSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPY 172
SG++ ++C+ C S K +L H R H G P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 37.2 bits (87), Expect = 4e-04
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 548 RIHTGEKPYACSLCDLKFSQNSQLKYH 574
+G++ Y C C F Q L H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 32.2 bits (74), Expect = 0.023
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 369 RTHTGEKPFKCTHCRYSASRRDTLDHH 395
+G++ ++C C S ++ +L H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 28.7 bits (65), Expect = 0.46
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 278 HTGERTYKCEFCDYTAARKDTLGVHVRI 305
+G+R Y+C+ C + +K +L +H RI
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERI 32
Score = 28.3 bits (64), Expect = 0.62
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 164 RTHIGEKPYKCSSCDFQATQKIQVKKH 190
G++ Y+C C QK + H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 25.6 bits (57), Expect = 5.8
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPF 256
Y+C C + H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 24.8 bits (55), Expect = 9.9
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPF 377
Y C C + + H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 51.4 bits (124), Expect = 4e-09
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 513 GHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYA 557
G G KPY+C C +Q L H+R+HTG P +
Sbjct: 1 GSSGSSG----GEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 47.9 bits (115), Expect = 6e-08
Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 28/67 (41%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
GEKPY C C KAF K +L H+R
Sbjct: 2 SSGSSGGEKPYRCDQC-------------------GKAFS---------QKGSLIVHIRV 33
Query: 166 HIGEKPY 172
H G P
Sbjct: 34 HTGSGPS 40
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTY 284
+ GE+P++C C F +K +L +HI+ HTG
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYS 117
GEK Y C C + + L H R HTG P S
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 45.6 bits (109), Expect = 4e-07
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 546 HMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
GEKPY C C FSQ L H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 36.8 bits (86), Expect = 7e-04
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQV 398
+ GEKP++C C + S++ +L HI+V
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 162 HMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ GEKPY+C C +QK + H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE+ Y+C+ C ++K +L VH+R+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 28.3 bits (64), Expect = 0.72
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPF 256
Y+C C +I HIR HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPF 377
Y C C + + HIR HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 51.1 bits (123), Expect = 5e-09
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 518 HINGHVGIKPYKCLH--CSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ G KP+ C C ++ ++S L RH R H+G KP S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 49.2 bits (118), Expect = 2e-08
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 78 HFLKHTGEKSYECCW--CTYKTAYENDLKKHQRKHTGEKPYSC 118
TGEK + C W C ++ + ++L +H+R H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 48.8 bits (117), Expect = 4e-08
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 133 THLKVHSGEKAFKCEY--CSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
+ +GEK F C + C + L H R+H G KP SS
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 48.1 bits (115), Expect = 6e-08
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 246 HIRNHTGERPFQCK--ICDSTFKRKQTLDLHIKRHTGERTYKCE 287
+ TGE+PF C C F R L H + H+G +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 42.3 bits (100), Expect = 8e-06
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 367 HIRTHTGEKPFKCTH--CRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGEKPF CT C + SR D L H + H K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSGP 45
Score = 41.5 bits (98), Expect = 2e-05
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 544 GRHMRIHTGEKPYACS--LCDLKFSQNSQLKYHLTT 577
G TGEKP+AC+ C +FS++ +L H +
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 33.8 bits (78), Expect = 0.008
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 274 HIKRHTGERTYKCEF--CDYTAARKDTLGVHVRI 305
TGE+ + C + C + +R D L H R
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 32.3 bits (74), Expect = 0.025
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 365 KKHIRTHTGEKPFKCT 380
+H R+H+G KP +
Sbjct: 31 SRHRRSHSGVKPSGPS 46
Score = 28.8 bits (65), Expect = 0.44
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 240 SSRMIKHIRNHTGERPFQC 258
S + +H R+H+G +P
Sbjct: 27 SDELSRHRRSHSGVKPSGP 45
Score = 28.0 bits (63), Expect = 0.97
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 75 LKRHFLKHTGEKSYEC 90
L RH H+G K
Sbjct: 30 LSRHRRSHSGVKPSGP 45
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 50.6 bits (122), Expect = 7e-09
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYAC 558
+G G PY+C C + L H R H GE +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
+GE YEC C ++ L HQR H GE S G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 47.9 bits (115), Expect = 8e-08
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 136 KVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKC 174
SGE ++C C + K L +H RTH GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+GE P++C C F RK L H + H GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 39.4 bits (93), Expect = 7e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 548 RIHTGEKPYACSLCDLKFSQNSQLKYH 574
+GE PY CS C F++ QL H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 369 RTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+GE P++C+ C + +R+D L H Q +H +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH-QRTHAGESGPSS 41
Score = 30.6 bits (70), Expect = 0.11
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C ++I H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 164 RTHIGEKPYKCSSCDFQATQKIQVKKH 190
GE PY+CS C +K Q+ H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 29.8 bits (68), Expect = 0.21
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 366 KHIRTHTGEKPFKC 379
H RTH GE
Sbjct: 28 SHQRTHAGESGPSS 41
Score = 28.2 bits (64), Expect = 0.61
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 276 KRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE Y+C C RKD L H R
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRT 32
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 50.6 bits (122), Expect = 8e-09
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMR-IHTGEKPYACS 559
+ G KPY+C+ C Q++ L RH R HTGEKP S
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 49.9 bits (120), Expect = 2e-08
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR- 164
TG+KPY C C KAF ++L H R
Sbjct: 3 SGSSGTGKKPYECIEC-------------------GKAFIQ---------NTSLIRHWRY 34
Query: 165 THIGEKPYKCSS 176
H GEKP SS
Sbjct: 35 YHTGEKPSGPSS 46
Score = 45.6 bits (109), Expect = 5e-07
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRK-HTGEKPYSC 118
TG+K YEC C L +H R HTGEKP
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 44.9 bits (107), Expect = 8e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TG+KPY C C F QN+ L H
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKR-HTGERTYKC 286
+ TG++P++C C F + +L H + HTGE+
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 37.2 bits (87), Expect = 4e-04
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCP 409
+ TG+KP++C C + + +L H + H +K
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 34.1 bits (79), Expect = 0.007
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + G+KPY+C C
Sbjct: 2 SSGSSGTGKKPYECIEC 18
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKH 307
TG++ Y+C C + +L H R H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
TGE YECC C + ++ L HQ+ H+G+ S G
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYAC 558
+ G PY+C C ++ L H + H+G+ +
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/70 (21%), Positives = 18/70 (25%), Gaps = 28/70 (40%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMR 164
TGE PY C C K F K L +H +
Sbjct: 2 SSGSSGTGENPYECCEC-------------------GKVFS---------RKDQLVSHQK 33
Query: 165 THIGEKPYKC 174
TH G+
Sbjct: 34 THSGQSGPSS 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ TGE P++C C F RK L H K H+G+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G TGE PY C C FS+ QL H
Sbjct: 1 GSSGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 35.9 bits (84), Expect = 0.001
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQC 408
+ TGE P++C C SR+D L H Q +H +
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH-QKTHSGQSGPSS 43
Score = 31.7 bits (73), Expect = 0.038
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 161 THMRTHIGEKPYKCSSC 177
+ + GE PY+C C
Sbjct: 2 SSGSSGTGENPYECCEC 18
Score = 28.6 bits (65), Expect = 0.56
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
TGE Y+C C +RKD L H +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT 34
Score = 28.2 bits (64), Expect = 0.71
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y+C C +++ H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 49.6 bits (119), Expect = 2e-08
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYA 557
G PY C C TQ L H R + P +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 44.2 bits (105), Expect = 1e-06
Identities = 13/68 (19%), Positives = 17/68 (25%), Gaps = 28/68 (41%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
GE PY CG C K+F + +L H R+
Sbjct: 2 SSGSSGGETPYLCGQC-------------------GKSF---------TQRGSLAVHQRS 33
Query: 166 HIGEKPYK 173
P
Sbjct: 34 CSQSGPSS 41
Score = 43.4 bits (103), Expect = 3e-06
Identities = 11/36 (30%), Positives = 12/36 (33%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYS 117
GE Y C C L HQR + P S
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 41.5 bits (98), Expect = 1e-05
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYK 285
+ GE P+ C C +F ++ +L +H + +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 39.2 bits (92), Expect = 1e-04
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 546 HMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
GE PY C C F+Q L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 31.5 bits (72), Expect = 0.043
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 162 HMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ GE PY C C TQ+ + H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 31.5 bits (72), Expect = 0.047
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ GE P+ C C S ++R +L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 28.4 bits (64), Expect = 0.65
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 278 HTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE Y C C + ++ +L VH R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 27.6 bits (62), Expect = 1.0
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEKPFK 378
Y+C C R + H R+ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 50.4 bits (120), Expect = 2e-08
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 103 LKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTH 162
K Q+ H G++ C C + S K CE C S ++ L
Sbjct: 6 SGKRQKIHLGDRSQKCSKC-------GIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 163 MRTHIGEKPYKCSS 176
G+K SS
Sbjct: 59 EGNESGKKTSGPSS 72
Score = 40.4 bits (94), Expect = 7e-05
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 511 KSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQ 570
SG + H+G + KC C + S + K C C Q +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAA 54
Query: 571 LKYHLTT 577
L
Sbjct: 55 LNKDEGN 61
Score = 38.5 bits (89), Expect = 4e-04
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 240 SSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTL 299
S K + H G+R +C C F R+ T + +T CE C + ++ L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAAL 55
Query: 300 GVHVRIK 306
+
Sbjct: 56 NKDEGNE 62
Score = 37.7 bits (87), Expect = 6e-04
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 127 SSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQ 186
SS K+H G+++ KC C T K C C + Q+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAA 54
Query: 187 VKKH 190
+ K
Sbjct: 55 LNKD 58
Score = 36.9 bits (85), Expect = 0.001
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 155 SKSNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCR 214
S + + H+G++ KCS C ++ + + +C+ C + L
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEA-ALNKDEG 60
Query: 215 T 215
Sbjct: 61 N 61
Score = 35.8 bits (82), Expect = 0.003
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTH 134
+ H G++S +C C + + K C C + + +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 135 LKVHSGEKAF 144
SG+K
Sbjct: 59 EGNESGKKTS 68
Score = 35.4 bits (81), Expect = 0.004
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 518 HINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACS 559
+ K C C S Q + L + +G+K S
Sbjct: 30 RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPS 71
Score = 35.0 bits (80), Expect = 0.005
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTY 284
+ + C+ C ++ L+ +G++T
Sbjct: 30 RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 33.5 bits (76), Expect = 0.018
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 364 MKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQM 423
K + H G++ KC+ C RR TL K C C ++ L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAALNK 57
Query: 424 H 424
Sbjct: 58 D 58
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 49.6 bits (118), Expect = 7e-08
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 110 HTGEKPYSCGHCPYTARSSSYMLTHL-KVHSGEKAFKCEYCSY--------SSYSKSNLR 160
+ C T + ++TH+ H G C + S +K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 161 THMRTHIGEKPYKCS 175
H+R H GEK S
Sbjct: 80 NHIRVHTGEKSGPSS 94
Score = 46.1 bits (109), Expect = 1e-06
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 496 GSFRFVCFTCNYHTYKSGHMRQHING-HVGIKPYKCLHCSYK--------STQSSCLGRH 546
+C+ + H+ HVG C ++ L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 547 MRIHTGEKPYACS 559
+R+HTGEK S
Sbjct: 82 IRVHTGEKSGPSS 94
Score = 39.6 bits (92), Expect = 3e-04
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 28/103 (27%)
Query: 278 HTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKE 337
+ + + CD T + L HV ++H ++ +C +E
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH---------------VGGPEQNNHVCYWEE 64
Query: 338 RPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCT 380
C + + HIR HTGEK +
Sbjct: 65 -------------CPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 38.0 bits (88), Expect = 9e-04
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 224 RSYQYQCYSCEYHSLYSSRMIKHIRN-HTGERPFQ--------CKICDSTFKRKQTLDLH 274
SC+ ++ H+ H G C +FK K L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 275 IKRHTGERTYKC 286
I+ HTGE++
Sbjct: 82 IRVHTGEKSGPS 93
Score = 34.9 bits (80), Expect = 0.010
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 57 QNKNTCCICGHVESGAWRLKRHFLK-HTG---EKSYECCW-----CTYKTAYENDLKKHQ 107
Q C S L H H G + ++ C W + L H
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 108 RKHTGEKPYSC 118
R HTGEK
Sbjct: 83 RVHTGEKSGPS 93
Score = 34.6 bits (79), Expect = 0.012
Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 49/123 (39%)
Query: 137 VHSGEKAFKCEYCSYSSYSKSNLRTHM-RTHIGEKPYKCSSCDFQATQKIQVKKHVLIIC 195
+ + + + C + + L TH+ H+G C ++
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE--------------- 63
Query: 196 QHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERP 255
+C +++ HIR HTGE+
Sbjct: 64 ---------------------------------ECPREGKSFKAKYKLVNHIRVHTGEKS 90
Query: 256 FQC 258
Sbjct: 91 GPS 93
Score = 32.2 bits (73), Expect = 0.099
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 549 IHTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
I + CD FS +L H+T H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 31.1 bits (70), Expect = 0.24
Identities = 9/63 (14%), Positives = 13/63 (20%), Gaps = 9/63 (14%)
Query: 522 HVGIKPYKCLHCSYKSTQSSCLGRHM-RIHTGEKPYA--------CSLCDLKFSQNSQLK 572
C + L H+ H G C F +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 573 YHL 575
H+
Sbjct: 80 NHI 82
Score = 30.7 bits (69), Expect = 0.31
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 8/63 (12%)
Query: 370 THTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYR--------CTKKYNL 421
+ C + S L H+ + H+ VC + KY L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 422 QMH 424
H
Sbjct: 79 VNH 81
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKC 146
T K Y+C C ++ H K+H+ +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYAC 558
+ K Y C C T+ L RH +IHT + +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+ T + + C C F R L H K HT +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 43.0 bits (102), Expect = 5e-06
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G T K Y C+ C F++ L H
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 39.9 bits (94), Expect = 5e-05
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
T KSY C C L +HQ+ HT + S G
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 134 HLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKC 174
+ K++ C C + +L H + H +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.8 bits (86), Expect = 7e-04
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ T K + C C + +R L H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 32.9 bits (76), Expect = 0.016
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 162 HMRTHIGEKPYKCSSC 177
+ K Y C+ C
Sbjct: 3 SGSSGTDSKSYNCNEC 18
Score = 28.7 bits (65), Expect = 0.46
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
T ++Y C C R L H +I
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 46.2 bits (110), Expect = 2e-07
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 246 HIRNHTGERPFQCKICDSTFKRKQTLDLHIKRH 278
R TG +PFQC CD +F R L LH KRH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 41.6 bits (98), Expect = 1e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 546 HMRIHTGEKPYACSLCDLKFSQNSQLKYHLTT 577
R TG KP+ C CD FS++ L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 39.2 bits (92), Expect = 8e-05
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 367 HIRTHTGEKPFKCTHCRYSASRRDTLDHHI 396
R TG KPF+C C S SR D L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 36.5 bits (85), Expect = 6e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 106 HQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVH 138
R TG KP+ C C + S ++ H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 36.2 bits (84), Expect = 0.001
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 134 HLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHI 167
+ +G K F+C C S +L H + H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 33.5 bits (77), Expect = 0.007
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 513 GHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIH 550
G R GIKP++C C ++S L H + H
Sbjct: 1 GSTRGST----GIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 32.7 bits (75), Expect = 0.017
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVR 304
+ TG + ++C CD + +R D L +H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 30.8 bits (70), Expect = 0.086
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 162 HMRTHIGEKPYKCSSCD 178
R G KP++C CD
Sbjct: 2 STRGSTGIKPFQCPDCD 18
Score = 28.8 bits (65), Expect = 0.41
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 81 KHTGEKSYECCWCTYKTAYENDLKKHQRKH 110
TG K ++C C + + L H+++H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 47.5 bits (112), Expect = 5e-07
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 101 NDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHL-KVHSG---EKAFKCEYCSYSSYSK 156
+ +Q+ E Y C +C + + H+ H ++ C C++ +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 157 SNLRTH-MRTHIGEKPYKCS 175
L H ++ H GE+ +K +
Sbjct: 64 DALSEHNLKYHPGEENFKLT 83
Score = 40.1 bits (93), Expect = 2e-04
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 75 LKRHFLKHTGEKSYECCWCTYKTAYENDLKKH-QRKHTG---EKPYSCGHCPYTARSSSY 130
+ E YEC +CT++T N H +H Y C C + +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 131 MLTH-LKVHSGEKAFKC 146
+ H LK H GE+ FK
Sbjct: 66 LSEHNLKYHPGEENFKL 82
Score = 39.8 bits (92), Expect = 2e-04
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 238 LYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHI-KRHTGER---TYKCEFCDYTA 293
+ + +N E ++CK C H+ H +Y C C++
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 294 ARKDTLGVHVRIKH 307
R D L H H
Sbjct: 61 KRYDALSEHNLKYH 74
Score = 38.2 bits (88), Expect = 8e-04
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSH---LYKKRFQCPVCDYRCTKKYNLQ 422
+ + E ++C +C + + H+ H + + C C++ + L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 423 MHALTKH 429
H L H
Sbjct: 68 EHNLKYH 74
Score = 37.1 bits (85), Expect = 0.002
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 514 HMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRI-HTG---EKPYACSLCDLKFSQNS 569
H + Y+C +C++++ + H+ H Y C C+ +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 570 QLKYHLTTRH 579
L H H
Sbjct: 65 ALSEHNLKYH 74
Score = 34.4 bits (78), Expect = 0.020
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 349 YVCYTCDYHTGVRECMKKHIRT-HTG---EKPFKCTHCRYSASRRDTLDHHIQVSHLYKK 404
Y C C + T H+ + H + C C + R D L H H ++
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 78
Query: 405 RFQCPV 410
F+ +
Sbjct: 79 NFKLTM 84
Score = 33.6 bits (76), Expect = 0.036
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 482 VSHGELCSGVPRPDGSFRFVCFTCNYHTYKSGHMRQHIN-GHVGIK---PYKCLHCSYKS 537
++H + C C + T H++ H + Y C+ C++ +
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 538 TQSSCLGRH-MRIHTGEKPYACSL 560
+ L H ++ H GE+ + ++
Sbjct: 61 KRYDALSEHNLKYHPGEENFKLTM 84
Score = 32.1 bits (72), Expect = 0.13
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 25/105 (23%)
Query: 157 SNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVLIICQHCDQSLFGTTQQLADHCRTC 216
+ + + E Y+C C FQ HV +H + L
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHV--DSEHPNVVL-------------- 47
Query: 217 DKMPRPDRSYQYQCYSCEYHSLYSSRMIKHI-RNHTGERPFQCKI 260
+ Y C C + + + +H + H GE F+ +
Sbjct: 48 --------NSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
Score = 31.7 bits (71), Expect = 0.15
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 34/108 (31%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRIC 333
+ + E Y+C++C + + HV +H
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH-------------------------- 42
Query: 334 SGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHI-RTHTGEKPFKCT 380
+ + +YVC C++ T + + +H + H GE+ FK T
Sbjct: 43 -------PNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT 83
Score = 27.4 bits (60), Expect = 5.5
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 391 TLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALTKH 429
HH Q + + ++C C ++ H ++H
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 43.5 bits (103), Expect = 3e-06
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 521 GHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYAC 558
G G KPY C C + ++ L +H ++HT + +
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 42.3 bits (100), Expect = 6e-06
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 82 HTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
+GEK Y C C + N L +HQ+ HT + S G
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 41.9 bits (99), Expect = 8e-06
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKC 286
+GE+P+ C C TF L H K HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 41.5 bits (98), Expect = 1e-05
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 110 HTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKC 146
+GEKPYSC C T ++ ++ H K+H+ +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 39.2 bits (92), Expect = 9e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 548 RIHTGEKPYACSLCDLKFSQNSQLKYH 574
+GEKPY+C+ C FS N++L H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 34.2 bits (79), Expect = 0.006
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 369 RTHTGEKPFKCTHCRYSASRRDTLDHH 395
+GEKP+ C C+ + S + L H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 29.2 bits (66), Expect = 0.35
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 164 RTHIGEKPYKCSSC 177
GEKPY C+ C
Sbjct: 3 SGSSGEKPYSCAEC 16
Score = 26.9 bits (60), Expect = 2.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
Y C C+ ++R+++H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 26.5 bits (59), Expect = 2.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 278 HTGERTYKCEFCDYTAARKDTLGVHVRI 305
+GE+ Y C C T + + L H ++
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKM 32
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 43.4 bits (102), Expect = 3e-06
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLC 561
K C C L RH H+GEKPY+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.9 bits (93), Expect = 5e-05
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 138 HSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSSC 177
K CE C +L H +H GEKPY
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.8 bits (90), Expect = 1e-04
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 81 KHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHC 121
K C C L +H+ H+GEKPYS G
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 5e-04
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 248 RNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFC 289
+ + C+IC F+ L+ H H+GE+ Y
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 36.5 bits (84), Expect = 0.001
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 107 QRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCS 150
K +C C R ++ H HSGEK + S
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 33.4 bits (76), Expect = 0.013
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 54 GRAQNKNTCCICGHVESGAWRLKRHFLKHTGEKSYECCWCT 94
GR + + C ICG + + L RH L H+GEK Y +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 33.0 bits (75), Expect = 0.016
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 348 NYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHC 382
C C + +H +H+GEKP+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 30.3 bits (68), Expect = 0.14
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 227 QYQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKIC 261
Q C C + +H +H+GE+P+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.8 bits (59), Expect = 2.4
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 499 RFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCS 534
+ C C H+ +H H G KPY S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 25.7 bits (56), Expect = 7.3
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G K AC +C F L H
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRH 31
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 44.9 bits (105), Expect = 6e-06
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 4/116 (3%)
Query: 198 CDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEY--HSLYSSRMIKHIRNHTGERP 255
+ L + R P R + + + L S + +
Sbjct: 15 SNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQ 74
Query: 256 FQCKICDSTFKRKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISI 311
F C +C F +L HI+ E T C C D+ HV KH I +
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 43.4 bits (101), Expect = 2e-05
Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 3/119 (2%)
Query: 461 GHETVICHHCRDLLPYKIKDLVSHGELCSGVPRPDGSFRFVCFTCNYHTYKSGHMRQHIN 520
G + + +H + +++L + +L R + +S ++ + +
Sbjct: 9 GSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL- 67
Query: 521 GHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
I + C C + S L +H+R E C +C +F+ H+ +H
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 37.6 bits (86), Expect = 0.002
Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 6/96 (6%)
Query: 75 LKRHFLKHTGEKSYEC----CWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSY 130
+ H L ++ + E+ + C C SS
Sbjct: 30 KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVS 89
Query: 131 MLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTH 166
+ H++ E C C S + H+
Sbjct: 90 LKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 36.8 bits (84), Expect = 0.004
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 102 DLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRT 161
L Q++ + H P SSY+ L + + F C C S +L+
Sbjct: 34 QLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQ-FVCPLCLMPFSSSVSLKQ 92
Query: 162 HMRTHIGEKPYKCSSCDFQATQKIQVKKHV 191
H+R E C C + T HV
Sbjct: 93 HIRYT--EHTKVCPVCKKEFTSTDSALDHV 120
Score = 34.9 bits (79), Expect = 0.021
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 8/119 (6%)
Query: 311 ICQNCGLILSTITEELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRT 370
+ + G+ + EEL + ++ ++R + K+ + +
Sbjct: 14 LSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLI-----HNPQLLDESSYLYRLLA 68
Query: 371 HTGEKPFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALTKH 429
F C C S +L HI + CPVC T + H KH
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHI---RYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 27.2 bits (59), Expect = 9.3
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 61 TCCICGHVESGAWRLKRHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKH 110
C +C S + LK+H E + C C + + H K
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 42.2 bits (99), Expect = 9e-06
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 517 QHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
+ G P+KC C TQ + L +H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 41.4 bits (97), Expect = 2e-05
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 105 KHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
GE P+ C C +Y++ H + H+ +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 40.2 bits (94), Expect = 4e-05
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 245 KHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+ GE PF+C CD F ++ L H + H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 39.1 bits (91), Expect = 1e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 544 GRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
G GE P+ CS CD F+Q + L H
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 36.8 bits (85), Expect = 7e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 77 RHFLKHTGEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCG 119
GE ++C C N L +H+R H + S G
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
Score = 36.4 bits (84), Expect = 0.001
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 133 THLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKP 171
+ +GE FKC C ++ L H RTH +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 33.3 bits (76), Expect = 0.011
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 366 KHIRTHTGEKPFKCTHCRYSASRRDTLDHH 395
+ GE PFKC+ C ++R+ L H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 33.3 bits (76), Expect = 0.011
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 161 THMRTHIGEKPYKCSSCDFQATQKIQVKKH 190
+ + GE P+KCS CD TQ+ + +H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 28.7 bits (64), Expect = 0.54
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRI 305
GE +KC CD +++ L H R
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 3e-04
Identities = 78/578 (13%), Positives = 146/578 (25%), Gaps = 183/578 (31%)
Query: 4 LFILRRTSREQ--------SICIDYTSLFRRSKQKHVLHLWPCRIWSMAIEEAFFEAYGR 55
LF + +E+ + I+Y L K + R SM + + E R
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-------QRQPSM-MTRMYIEQRDR 118
Query: 56 AQNKNTCCICGHV--ESGAWRLKRHFLK---------H----TGEKSYECCWCTYKTAYE 100
N N +V +L++ L+ +G K+ W
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KT----WVALDVCLS 173
Query: 101 NDLKKHQRKHTGEKPY--SCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKS- 157
++ K + + +C + + ML L + S S +S +
Sbjct: 174 YKVQCKM----DFKIFWLNLKNC-NSPETVLEMLQKLLYQ-----IDPNWTSRSDHSSNI 223
Query: 158 -----NLRTHMRTHIGEKPYKCS------------------SC-------DFQATQKIQV 187
+++ +R + KPY+ SC Q T +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 188 KKHVLIICQHCDQSLFGTTQQLADHCRTC-----DKMPR--------------------P 222
I H +L T ++ +PR
Sbjct: 284 ATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 223 DRSYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQ-CKICDSTFKRKQTLDLHIKRHT-- 279
++ +C+ + + + + F + F HI
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----FPP----SAHIPTILLS 393
Query: 280 ---GERTYKC------EFCDYTAARKD----TLGVH---VRIKHKISICQNCGLILSTIT 323
+ + Y+ K T+ + + +K K+ +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-------EYALH 446
Query: 324 EELLEHCRICSGKERPDSSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEKPFKCTHCR 383
+++H I + D Y +H +K R
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH------LKNIEHPE-----------R 489
Query: 384 YSASRRDTLDHH-IQVSHLYKKRFQCPVCDYRCTKKYNLQMHALTKHDLDIKSDGIIQDA 442
+ R LD ++ K R + + LQ L
Sbjct: 490 MTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQ-------QLKFYKP------ 532
Query: 443 GTYILDTALSPEKRVKS-----RGHET-VICHHCRDLL 474
YI D E+ V + E +IC DLL
Sbjct: 533 --YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 37.2 bits (85), Expect = 5e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHTG 280
+GE+P+ C +C FKRK + H++ H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.4 bits (70), Expect = 0.051
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 550 HTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
+GEKPY+C +C L+F + ++ YH+ +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 28.7 bits (63), Expect = 0.58
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 278 HTGERTYKCEFCDYTAARKDTLGVHVRIKH 307
+GE+ Y C C RKD + HVR
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 27.6 bits (60), Expect = 1.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 371 HTGEKPFKCTHCRYSASRRDTLDHHIQVSH 400
+GEKP+ C C R+D + +H++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 25.6 bits (55), Expect = 6.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 110 HTGEKPYSCGHCPYTARSSSYMLTHLKVHSG 140
+GEKPYSC C + M H++ H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.3 bits (54), Expect = 8.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 520 NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTG 552
+G G KPY C C + + + H+R H G
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.3 bits (83), Expect = 0.001
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 142 KAFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
K +KC CSY+S K+NL H+R H GEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 34.8 bits (79), Expect = 0.003
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
KPYKC CSY S + L H+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 32.9 bits (74), Expect = 0.013
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 83 TGEKSYECCWCTYKTAYENDLKKHQRKHTGEK 114
+ K Y+C C+Y +A + +L H RKHTGEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.7 bits (71), Expect = 0.041
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 251 TGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+ +P++C C K L++H+++HTGE+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 30.6 bits (68), Expect = 0.084
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 341 SSTDKSFNYVCYTCDYHTGVRECMKKHIRTHTGEK 375
SS Y C C Y + ++ + H+R HTGEK
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.4 bits (65), Expect = 0.28
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+ KPY C C Y + + + HL+ H+GEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.6 bits (63), Expect = 0.40
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGER 254
Y+C C Y S + + H+R HTGE+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.1 bits (59), Expect = 1.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 279 TGERTYKCEFCDYTAARKDTLGVHVR 304
+ + YKC C Y +A K L VH+R
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLR 30
Score = 26.3 bits (57), Expect = 3.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 372 TGEKPFKCTHCRYSASRRDTLDHHIQ 397
+ KP+KC C Y+++ + L+ H++
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLR 30
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 37.6 bits (86), Expect = 0.001
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 3/88 (3%)
Query: 104 KKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHM 163
++ Y C C S +H ++ A C YCS +S + H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH- 61
Query: 164 RTHIGEKPYKCSSCDFQATQKIQVKKHV 191
+ K C C + +H
Sbjct: 62 ESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 29.9 bits (66), Expect = 0.68
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 84 GEKSYECCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKA 143
++ Y+C C K + + H+R C +C S H + K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 144 FKCEYCSYSSYSKSNLRTH 162
C C + S ++ H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 29.5 bits (65), Expect = 0.96
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 274 HIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRIC 333
+ Y+C C+ + G H R+ ++C C L + E EH C
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFS-PELKQEHESKC 65
Query: 334 SGKERPDSSTDKSFNY 349
K+ ++F
Sbjct: 66 EYKKLTCLECMRTFKS 81
Score = 29.5 bits (65), Expect = 1.2
Identities = 15/80 (18%), Positives = 20/80 (25%), Gaps = 3/80 (3%)
Query: 228 YQCYSCEYHSLYSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGERTYKCE 287
YQC C H R C C F + H + + C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCL 73
Query: 288 FCDYTAARKDTLGVHVRIKH 307
C T ++ H H
Sbjct: 74 ECMRTFKSSFSIWRHQVEVH 93
Score = 29.5 bits (65), Expect = 1.2
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 187 VKKHVLIICQHCDQSLFGTTQQLADHCRTCDKMPRPDRSYQYQCYSCEYHSLYSSRMIKH 246
V+ + C+ C+ + + H R C C C +S + +
Sbjct: 11 VENKEVYQCRLCNAK-LSSLLEQGSHERLCR--------NAAVCPYCSL-RFFSPELKQE 60
Query: 247 IRNHTGERPFQCKICDSTFKRKQTLDLHIKR 277
+ + C C TFK ++ H
Sbjct: 61 HESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 28.7 bits (63), Expect = 1.9
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 524 GIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYH 574
+ Y+C C+ K + G H R+ C C L+F + H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH 61
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
R F C++C F R++ L H + HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (69), Expect = 0.081
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
+ + C C+ + L RH R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.4 bits (64), Expect = 0.45
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 142 KAFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
++F CE C+ + + +L+ H R+H EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.9 bits (60), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 349 YVCYTCDYHTGVRECMKKHIRTHTGEK 375
+VC C +E +K+H R+HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.7 bits (57), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEK 114
+S+ C CT A + LK+H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.7 bits (79), Expect = 0.003
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 525 IKPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
+KPY C+HC + L RH+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.4 bits (60), Expect = 1.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 114 KPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
KPY C HC + H+++H+GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.3 bits (57), Expect = 2.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 142 KAFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
K + C +C L+ H+R H GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.3 bits (57), Expect = 2.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEK 114
K Y C C + A L++H R HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.3 bits (57), Expect = 2.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+P+ C C F L H++ HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.1 bits (79), Expect = 0.004
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 526 KPYKC--LHCSYKSTQSSCLGRHMRIHTGEK 554
+P+ C +C + T+S L RH R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.1 bits (66), Expect = 0.22
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 86 KSYECCW--CTYKTAYENDLKKHQRKHTGEK 114
+ + C W C + ++L++H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.3 bits (64), Expect = 0.42
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 254 RPFQC--KICDSTFKRKQTLDLHIKRHTGER 282
RPF C C F R L H + HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.7 bits (76), Expect = 0.008
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 139 SGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
S K FKC C Y++ SKSNL+ HM H EK
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 29.5 bits (65), Expect = 0.27
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 114 KPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
KP+ C C Y RS S + H+ HS EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.3 bits (62), Expect = 0.68
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+PF+C +C+ + K L H+ RH+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.8 bits (58), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
KP+KC C Y + S L HM H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 25.6 bits (55), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 86 KSYECCWCTYKTAYENDLKKHQRKHTGEK 114
K ++C C Y T +++LK H +H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 38.3 bits (88), Expect = 0.008
Identities = 8/60 (13%), Positives = 15/60 (25%)
Query: 107 QRKHTGEKPYSCGHCPYTARSSSYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRTH 166
+ S ++C CS +S +L H+ +H
Sbjct: 144 GSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 37.5 bits (86), Expect = 0.014
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 548 RIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHDLPDMST 586
+ Y C +C L H+ + +M+
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTL 211
Score = 32.1 bits (72), Expect = 0.65
Identities = 8/80 (10%), Positives = 21/80 (26%), Gaps = 1/80 (1%)
Query: 200 QSLFGTTQQLADHCRTCDKMPRPDR-SYQYQCYSCEYHSLYSSRMIKHIRNHTGERPFQC 258
+ +L+ ++ + + + + +QC
Sbjct: 124 DTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQC 183
Query: 259 KICDSTFKRKQTLDLHIKRH 278
+C + LD H+ H
Sbjct: 184 HVCSAVLFSPLDLDAHVASH 203
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 33.2 bits (75), Expect = 0.011
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHT 279
+G+RPF C+IC S F K H+K HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.3 bits (65), Expect = 0.24
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 521 GHVGIKPYKCLHCSYKSTQSSCLGRHMRIHT 551
G G +P+ C C T + RH+++HT
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 28.2 bits (62), Expect = 0.56
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 138 HSGEKAFKCEYCSYSSYSKSNLRTHMRTH 166
SG++ F C C + +K+N H++ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 27.0 bits (59), Expect = 1.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 550 HTGEKPYACSLCDLKFSQNSQLKYHLTTRHD 580
+G++P+ C +C F+ + HL D
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 26.3 bits (57), Expect = 3.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 110 HTGEKPYSCGHCPYTARSSSYMLTHLKVHS 139
+G++P+ C C + + HLKVH+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.1 bits (54), Expect = 8.0
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 166 HIGEKPYKCSSCDFQATQKIQVKKHVLI 193
G++P+ C C T K +H+ +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.056
Identities = 47/244 (19%), Positives = 78/244 (31%), Gaps = 77/244 (31%)
Query: 335 GKERPDSSTDKSFNYVCYTCDYHTG------VRECMK---KHIRTHTGEKPFKCTHCRYS 385
G + +S K+ V D H + + + ++ H G + K YS
Sbjct: 1632 GMDLYKTS--KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 386 ASRRDT-LDHHIQVSHLYKK--------RFQCPVCDYRCTKKYNLQMHALTKHDL----D 432
A +T +D ++ ++K+ F+ + Q ALT + D
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQP-ALTLMEKAAFED 1746
Query: 433 IKSDGIIQD----A----GTYILDTAL-------SPE---KRVKSRG---HETVICHHCR 471
+KS G+I A G Y AL S E + V RG V R
Sbjct: 1747 LKSKGLIPADATFAGHSLGEY---AALASLADVMSIESLVEVVFYRGMTMQVAVP----R 1799
Query: 472 D-----------LLPYKIKDLVSH---GELCSGVPRPDGSFRFVCFTCNY----HTY-KS 512
D + P ++ S + V + G ++ NY Y +
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG---WLVEIVNYNVENQQYVAA 1856
Query: 513 GHMR 516
G +R
Sbjct: 1857 GDLR 1860
Score = 32.3 bits (73), Expect = 0.57
Identities = 56/348 (16%), Positives = 104/348 (29%), Gaps = 109/348 (31%)
Query: 282 RTYKC---EFCDYTAARKDTLGVHVRIKHKISICQNCGLILSTITEELLEHCRICSGKER 338
+TY + ++A +TL +R GL + E LE+
Sbjct: 178 QTYHVLVGDLIKFSA---ETLSELIRTTLDAEKVFTQGLNI----LEWLEN--------- 221
Query: 339 PDSSTDKSF-----------------NY--VCYTCDYHTGVRECMKKHIRTHTGEKPFKC 379
P ++ DK + +Y + G ++ +++ TG
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE---LRSYLKGATG-----H 273
Query: 380 THCRYSA---SRRDTLDH-HIQVSHLYKKRFQCPVCDYRCTKKY-NLQMHALTKHD---- 430
+ +A + D+ + + V F V RC + Y N + D
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV---RCYEAYPNTSLPPSILEDSLEN 330
Query: 431 --------LDIKSDGIIQDA-GTYI--LDTALSPEKRVK-----SRGHETVICHHCRDLL 474
L I + Q+ Y+ ++ L K+V+ + V+ + L
Sbjct: 331 NEGVPSPMLSIS--NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-LVVSGPPQSL- 386
Query: 475 PY-------KIKDLVSHGELCSGVP----RPDGSFRFVCFTCNYHTYKSGHMR---QHI- 519
Y K K G S +P + S RF+ +H S + I
Sbjct: 387 -YGLNLTLRKAK--APSGLDQSRIPFSERKLKFSNRFLPVASPFH---SHLLVPASDLIN 440
Query: 520 ----NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPYACSLCDL 563
+V K + T G +R+ +G + + D
Sbjct: 441 KDLVKNNVSFNA-KDIQIPVYDTFD---GSDLRVLSGSI--SERIVDC 482
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 32.9 bits (76), Expect = 0.19
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 303 VRIKHKISICQNCGLILSTITEELLEHCRICSGKERPDSST 343
+ K + +C C IT+ E C +C+ R D T
Sbjct: 48 LEAKRDLHVCPICF----NITDA--EKCDVCADPSR-DQRT 81
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.21
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 256 FQCKICDSTFKRKQTLDLHIKRHTGER 282
F C+ C+ FK K +L H++ HT E+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 29.4 bits (65), Expect = 0.22
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 139 SGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEK 170
S K F CEYC+ K +L+ H+R H EK
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 28.6 bits (63), Expect = 0.40
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 113 EKPYSCGHCPYTARSSSYMLTHLKVH 138
EKP+SC CP +R S M HL+ H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.9 bits (65), Expect = 0.40
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 139 SGEKAFKCEY--CSYSSYSKSNLRTHMRTHIGEK 170
+K C C S+LR H+R H GE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.5 bits (64), Expect = 0.58
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 526 KPYKCLH--CSYKSTQSSCLGRHMRIHTGEK 554
K + C C ++S L H+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.5 bits (59), Expect = 2.1
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 249 NHTGERPFQCKI--CDSTFKRKQTLDLHIKRHTGER 282
+ ++ C I C + + L H++ HTGER
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 28.2 bits (62), Expect = 0.54
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
KP +C+ C TQ+S L H+R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.2 bits (62), Expect = 0.64
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGER 282
+P QC +C F + +L H+++HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.1 bits (72), Expect = 0.63
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 554 KPYACSLCDLKFSQNSQLKYHLTTRHDLPDMSTCLS 589
Y C++C+ +FS S L HL + H + +
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLAT 150
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 31.7 bits (72), Expect = 0.93
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 306 KHKISICQNCGLILSTITEELLEHCRICSGKER 338
+ I +C CG I + C I K
Sbjct: 1058 RTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSN 1090
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.9 bits (62), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 246 HIRNHTGERP---FQCKI--CDSTFKRKQTLDLHIKRHTGER 282
I + E P F+C C TFKR+ + HI+ H +R
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.1 bits (60), Expect = 1.7
Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 141 EKAFKCEY--CSYSSYSKSNLRTHMRTHIGEK 170
+K F+C + C+ + + N+R+H++TH+ ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 30.1 bits (67), Expect = 1.4
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 13/65 (20%)
Query: 497 SFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKPY 556
F + H + I+ K + C C Y IH GE
Sbjct: 141 VFTRAKLAESVHAERYLAAYNDIDAPDDDKFHLCPICGY-------------IHKGEDFE 187
Query: 557 ACSLC 561
C +C
Sbjct: 188 KCPIC 192
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (60), Expect = 1.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 521 GHVGIKPYKCLHCSYKSTQSSCLGRHMRIHT 551
K +KC C + S L +H RIHT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.1 bits (59), Expect = 2.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 110 HTGEKPYSCGHCPYTARSSSYMLTHLKVHS 139
EK + C C T S Y+ H ++H+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.1 bits (59), Expect = 2.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 553 EKPYACSLCDLKFSQNSQLKYHLTTRH 579
+KPYAC +C ++ L YH H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 2.2
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 529 KCLHCSYKSTQSSCLGRHMRI-HTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
C + K+ L +HM + + C C +F + L YH H
Sbjct: 29 TCNVVTRKTLVG--LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 28.4 bits (62), Expect = 2.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 364 MKKHIRT-HTGEKPFKCTHCRYSASRRDTLDHHIQVSH 400
+KKH+ + KC HCR + L++H H
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 28.0 bits (61), Expect = 3.0
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 499 RFVCFTCNYHTYKSGH-MRQHI-NGHVGIKPYKCLHCSYKSTQSSCLGRHMRIHTGEKP 555
VC TCN T K+ +++H+ KC HC + + L H KP
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 26.8 bits (58), Expect = 7.2
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 90 CCWCTYKTAYENDLKKHQRK-HTGEKPYSCGHCPYTARSSSYMLTHLKV 137
C T KT LKKH + C HC +S + + H
Sbjct: 30 CNVVTRKTLVG--LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 26.4 bits (57), Expect = 9.1
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 139 SGEKAFKCEYCSYSSY-SKSNLRTHMRT-HIGEKPYKCSSCDFQATQKIQVKKHVL 192
C C+ + + L+ HM + KC C Q K + H +
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.4 bits (58), Expect = 2.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 375 KPFKCTHCRYSASRRDTLDHHIQVSH 400
K + C C + +RRD L H Q H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.6 bits (59), Expect = 2.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 254 RPFQCKICDSTFKRKQTLDLHIKRHTGERT 283
R + C C F+ Q L H+ H +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRA 34
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 2.4
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 231 YSCEYHSL--YSSRMIKHIRNHTGERPFQCKICDSTFKRKQTLDLHIKRHTGER 282
YS +Y S+ H GE+ Q + + + L I +
Sbjct: 182 YSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.0 bits (64), Expect = 3.7
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 96 KTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLKVH 138
+ + H+ GEK + + + +
Sbjct: 189 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 28.6 bits (63), Expect = 5.8
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 540 SSCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHL 575
S H + GEK + L+ +
Sbjct: 193 MSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.9 bits (61), Expect = 2.8
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 526 KPYKCLHCSYKSTQS-SCLGRHMRIHTGEKPYACSLCDLKFSQNSQLKYHLTTRH 579
C C ++ L +HM ++ + C C + + +KYH+ H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 27.1 bits (59), Expect = 5.3
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 90 CCWCTYKTAYENDLKKHQRKHTGEKPYSCGHCPYTARSSSYMLTHLK 136
C KT LKKH ++ ++C HC RS + M H+
Sbjct: 40 CQAVGRKTI--EGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVM 83
Score = 26.8 bits (58), Expect = 7.6
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 349 YVCYTCDYHT-GVRECMKKHIRTHTGEKPFKCTHCRYSASRRDTLDHHIQVSH 400
C TC E +KKH+ ++ F C HC + +H+ +H
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 26.8 bits (58), Expect = 9.1
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 107 QRKHTGEKPYSCGHCPYTARSS-SYMLTHLKVHSGEKAFKCEYCSYSSYSKSNLRTHMRT 165
+ + SC C R + + H++ ++ F C +C S + ++ H+
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMA 84
Query: 166 HIGEKP 171
+ P
Sbjct: 85 NHNSLP 90
Score = 26.4 bits (57), Expect = 9.1
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 142 KAFKCEYCSYSSYSK-SNLRTHMRTHIGEKPYKCSSCDFQATQKIQVKKHVL 192
+ C C L+ HM ++ + C C Q +K HV+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVM 83
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m
3o58_g 3o5h_g 3u5e_p 3u5i_p 1s1i_9
Length = 92
Score = 27.9 bits (62), Expect = 3.2
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 267 RKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISI 311
R+Q L I++H Y C FC ++ G+ K ++
Sbjct: 23 RRQVKKLEIQQH---ARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 64
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 27.5 bits (61), Expect = 3.6
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 267 RKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISI 311
RKQ + + +H Y CEFC A ++ +G+
Sbjct: 23 RKQIKKMEVSQH---SKYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.0 bits (56), Expect = 4.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 142 KAFKCEYCSYSSYSKSNLRTHMRT 165
K ++C+YC + S SNL+TH++T
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKT 24
Score = 25.2 bits (54), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 404 KRFQCPVCDYRCTKKYNLQMHALTKH 429
K +QC C++R NL+ H TKH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
Score = 25.2 bits (54), Expect = 6.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 554 KPYACSLCDLKFSQNSQLKYHLTTRH 579
K Y C C+ + + +S LK H+ T+H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.9 bits (56), Expect = 4.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 526 KPYKCLHCSYKSTQSSCLGRHMRIHTGEK 554
K ++C C Q L H +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.9 bits (56), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 139 SGEKAFKCEYCSYSSYSKSNLRTHMRTHIGEKPYKCSS 176
S EK+ +C C + +L H H+G+K SS
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSS 45
Score = 25.2 bits (54), Expect = 9.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 111 TGEKPYSCGHCPYTARSSSYMLTHLKVHSGEK 142
+ EK + C C ++ H +H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.5 bits (55), Expect = 5.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 139 SGEKAFKCEYC-SYSSYSKSNLRTHMRTHIGEK 170
S +A KC YC Y + S+L+ H+ H G K
Sbjct: 5 SSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding,
helix-turn-helix, gene regulation; NMR {Homo sapiens}
Length = 82
Score = 26.9 bits (59), Expect = 5.6
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 250 HTGERPFQCKICDSTFKRKQTLDLHIKRHTGE-RTYK 285
G R + R + + +IK TG+ RT K
Sbjct: 26 PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRK 62
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 72
Score = 26.7 bits (59), Expect = 5.6
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 267 RKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISIC 312
R+Q L I++H Y C FC ++ G+ K ++
Sbjct: 13 RRQVKKLEIQQH---ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 26.8 bits (59), Expect = 5.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 283 TYKCEFCDYTAARKDTLGVHVRIKHKISICQNC 315
Y+C D ++ T+ VH R +CQ+C
Sbjct: 49 IYRCNGTDIYKDKESTVQVHYR------MCQSC 75
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 29.1 bits (65), Expect = 5.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 306 KHKISICQNCGLILSTITEELLEHCRICSGKER 338
+++ +C CGLI ++ CR C + R
Sbjct: 1146 AYRVIVCDICGLIAIASYKKDSYECRSCQNRTR 1178
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Y 4a1c_Y 4a1e_Y
Length = 103
Score = 27.2 bits (60), Expect = 6.0
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 267 RKQTLDLHIKRHTGERTYKCEFCDYTAARKDTLGVHVRIKHKISI 311
RK I +H Y C FC A ++ +G+ K I
Sbjct: 23 RKVVKKFEITQH---AKYGCPFCGKVAVKRAAVGIWKCKPCKKII 64
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 6.9
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 252 GERPFQCKICDSTFKRKQTLDLHIKRHTGE 281
+ +C+ C F+ L H H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 28.5 bits (63), Expect = 7.3
Identities = 31/219 (14%), Positives = 45/219 (20%), Gaps = 31/219 (14%)
Query: 376 PFKCTHCRYSASRRDTLDHHIQVSHLYKKRFQCPVCDYRCTKKYNLQMHALTKHDLDIKS 435
P C+HC + K+ FQC VC + K+ H+ S
Sbjct: 48 PTFCSHCTDF------------IWGFGKQGFQCQVCSFVVHKRC---------HEFVTFS 86
Query: 436 DGIIQDAGTYILDTALSPEKRVKSRGHETVICHHCRDLLPYKIK--------DLVSHGEL 487
D S K C HC LL I + H
Sbjct: 87 CPGADKGPAS--DDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRC 144
Query: 488 CSGVPRPDGSFRFVCFTCNYHTYKSGHMRQHINGHVGIKPYKCLHCSYKSTQSSCLGRHM 547
VP G+ Y +
Sbjct: 145 VMNVPSLCGTDHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPD 204
Query: 548 RIHTGEKPYACSLCDLKFSQNSQLKYHLTTRHDLPDMST 586
++ L N ++ L +S
Sbjct: 205 PKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSV 243
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.9 bits (54), Expect = 8.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 256 FQCKICDSTFKRKQTLDLHIKRHTGER 282
F C C F R L LHI H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 27.7 bits (61), Expect = 8.6
Identities = 10/69 (14%), Positives = 16/69 (23%), Gaps = 16/69 (23%)
Query: 497 SFRFVCFTCNYHTYKSGHMRQHINGHVGIKP---YKCLHCSYKSTQSSCLGRHMRIHTGE 553
+ + H ++ I+ Y C C Y E
Sbjct: 105 TTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGY-------------TAVDE 151
Query: 554 KPYACSLCD 562
P C +C
Sbjct: 152 APEYCPVCG 160
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.2 bits (54), Expect = 9.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 554 KPYACSLCDLKFSQNSQLKYHLTTRH 579
+ Y+C +C+ FS++ +K H+ T H
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNH 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.451
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,952,973
Number of extensions: 524562
Number of successful extensions: 5098
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3881
Number of HSP's successfully gapped: 1677
Length of query: 596
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 497
Effective length of database: 3,937,614
Effective search space: 1956994158
Effective search space used: 1956994158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)