BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7450
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTH 68
Y C CGK + K+ L RH+ G++P Y+CP C Q+ +L+ H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTH 68
Y C CGK + + +L H+ G++P Y CP C Q HL+ H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH 124
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC----PYRGKQKVHLKTHVAIK 72
Y C CGK + + +L+ H+ G++P Y+CP C R VH +TH K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC--PYRGKQKV--HLKTHVAIK 72
Y C CGK + L H+ G++P Y+CP C + K+ + H +TH K
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEK 76
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTH 68
Y C CGK + L H+ G++P Y+CP C ++ +L TH
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTH 68
RY CD CGK + L +HR G++P Y+C C Q+ HL H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQG 75
Y CD C ++ K +L H+T+ G++P Y+C C + + +LKTH I H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI-HSG 70
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 22 TCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHV 69
C+ CGK+++ L RH+ G++P Y CP C R K+K + HV
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV 55
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCP--YRGKQKV--HLKTH 68
+ C+ CGK Y+ L RHR G PR CP C +R + +V HLK H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKVH 55
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKH 73
YQC +C YR +LKTH+ KH
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKH 26
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y CD CGK + L L RH+ + G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGK + ++ SL H+ + GK+P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 CDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQ 74
C CGK ++ L H G++P Y+C C Y QK L+ H+ H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGKV+ L RHR + G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKH 73
YQC +C +R +LKTH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGKV+ L RHR + G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGKV+ L RHR + G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGP 76
Y C CGK + L +H+ + G++P Y+C C Q L H I GP
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTSGP 69
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGP 76
+TC C + ++ + L H G+ P Y+C C + QK L++H+ H GP
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLEC--GKEPRYQCPHCPYRGKQKVHLKTHVAIKHQG 75
+ C CGK Y K +L H C E + C C ++++ L+ H+ + H G
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM-VSHTG 91
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTH 68
Y C CGK + L +H+ G++P Y+CP C + HL H
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKP-YKCPECGKSFSRSDHLSRH 79
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTH 68
Y C CGK + +L +H+ G++P Y+CP C Q L+ H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKH 51
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 16/112 (14%)
Query: 6 NLPPHTLFNPLLQFRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHL 65
N+ P T N FR C + K + K S++ HR + P + C
Sbjct: 30 NIVPRTAEN----FRALC-TGEKGFGFKNSIF-HRVI-----PDFVCQGGDITKHDGTGG 78
Query: 66 KTHVAIKHQGPEMLSVKHQGPEMLSIKHQGPET----LSIKHQVSEMLSIKH 113
++ K + E VKH GP +LS+ +QG T I + +E L KH
Sbjct: 79 QSIYGDKFE-DENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKH 129
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH--CPYRGKQKVHLKTHVAI 71
+ C CGK + L RH+ + G++P +QC C R +L+THV I
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEP 48
RY C+ CGKV+ L +H+ + G++P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGKV+ L RHR + G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2O8P|A Chain A, Crystal Structure Of A Putative 14-3-3 Protein From
Cryptosporidium Parvum, Cgd7_2470
Length = 227
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 98 TLSIKHQVSEMLSIKHQGPETLSIKHQGPEMLSIKHQGPESAFDLRRNNQAHLNGRKDMM 157
TL IKH++S+ + Q + + + E++ I E F LR++ +A L +D +
Sbjct: 52 TLCIKHKISDYRTXTSQVLQEQTKQLNNDELVKI---CSEYVFSLRKDIKAFLQSFEDCV 108
Query: 158 ERL 160
+RL
Sbjct: 109 DRL 111
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGK + K L RHR + G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPR 49
Y C+ CGK + + SL H+ + G++P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPS 41
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKH 73
YQC +C R +LKTH+ KH
Sbjct: 3 YQCQYCEXRSADSSNLKTHIKTKH 26
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKH 73
YQC +C R +LKTH+ KH
Sbjct: 3 YQCQYCELRSADSSNLKTHIKTKH 26
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGKV++ L RH+ + G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVA 70
Y C CGK +K+K L H + G +P Y+C C R + HV
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVT 86
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAI 71
+ C CGK +K +L H + P Y C +C R QK +K H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGK + +R LY H + G++P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPR 49
Y+C+ CGK + K L H+ + G +P
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKPS 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C CGKV++ L RH+ + G++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGK ++ + SL H+ G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C CGK +K K SL HR G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C CGK + ++SL H+ + GK+P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 21 YTC--DSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHV 69
Y C +SC + + SL RH + G++P +QC C + HL TH+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 21 YTCD--SCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGPEM 78
Y CD C + + L RH+ G +P +QC C + + HLKTH H G +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHTRT-HTGEKP 94
Query: 79 LSVK 82
S +
Sbjct: 95 FSCR 98
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGK + L RH+ + G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGK ++ +L H+ + G++P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
+ CD+C K ++ + +L HR + G++P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGK + L RH+ + G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKH 73
YQC +C R +LKTH+ KH
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKTKH 26
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y CD CGK + K SL H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C CGK + K +L +H+ + G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 67 THVAIKHQGP---EMLSVKHQGPEMLSIKHQGPET 98
T VA ++GP E ++H P +LS+ + GP T
Sbjct: 85 TGVASIYRGPFADENFKLRHSAPGLLSMANSGPST 119
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C CGK + K +L H+ + G++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C CGK +++ L +H ++ G+ P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
+ C CGKV+ K +L H+ + G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C CGK + + +L+ H+ + G++P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 56 PYRGKQKVHLKTHVAIKHQGPEMLSVKHQGPEML--SIKHQGPETLSIK-HQVSEMLSIK 112
P KQK LKT + P ++V+ + +++ K G E + ++ E L K
Sbjct: 58 PDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGK 117
Query: 113 HQGPETL--SIKHQGPEMLSIKH 133
+ L +K QG E+LS+++
Sbjct: 118 YGEDSKLIYDLKDQGGELLSLRY 140
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C CGK + + +L +H+ + G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGK 46
Y C+ CGK + LK L H + G+
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 21 YTCDSCGKVYKLKRSLYRH 39
+TC+ C KV+K K SL H
Sbjct: 10 FTCEYCNKVFKFKHSLQAH 28
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGKV+ L H + G++P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y C+ CGKV+ L H+ + G +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,866,569
Number of Sequences: 62578
Number of extensions: 175471
Number of successful extensions: 640
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 136
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)