RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7450
(161 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 43.9 bits (104), Expect = 6e-07
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 21 YTCDSCGKVYKLKRSLYRHR---TLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGPE 77
C+ CG + K SL H+ + C C R ++ + H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 78 MLSVKHQGP 86
+ + GP
Sbjct: 67 LAPQESSGP 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 40.2 bits (95), Expect = 1e-05
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQG 75
C C K +L H + C P ++C +C + KQ +L H+ G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK-FHG 62
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 39.5 bits (93), Expect = 3e-05
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 21 YTCDSCGKVYKLKRSLYRH-RTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQ 74
Y C C +VY + RH T Y CP C +K ++ HV I H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 38.9 bits (90), Expect = 3e-05
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAI 71
+Y C+ CG K L +H P Y C +C + K K +L H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 21 YTCDSCGKVYKLKRSLYRHR---TLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQG 75
Y C C + ++ H E ++ CPHC +K L H+ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVA--KFHCPHCDTVIARKSDLGVHLRKQHSY 71
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 33.2 bits (77), Expect = 0.008
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTH 68
Y C +C SL +H + + P ++C CPY + L H
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVH 83
Score = 30.1 bits (69), Expect = 0.11
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTH 68
+ C+ CGK + K L H G +P Y+C C Y L H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKH 55
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 32.8 bits (76), Expect = 0.011
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTHVAIKHQG 75
C+ CGK+++ L RH+ G++P Y CP C G +K + HV H G
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVC---GLRFKRKDRMSYHVRS-HDG 60
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.0 bits (74), Expect = 0.015
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y CD C ++ K +L H+T+ G++P Y+C C G + +LKTH
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNIC---GAQFNRPANLKTH 64
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 32.1 bits (74), Expect = 0.016
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 9/54 (16%)
Query: 21 YTCDSCGKVYKLKRSLYRHR---TLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y C C K ++ K+ L H + C C GK ++ + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC---GKTFTRRNTMARH 66
Score = 27.9 bits (63), Expect = 0.61
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC 55
+ C CGK + + ++ RH G + + +
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENS 81
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 31.6 bits (73), Expect = 0.022
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
+ C CGK +K +L H + P Y C +C GK QK +K H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYC---GKRFHQKSDMKKH 48
Score = 30.5 bits (70), Expect = 0.052
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y C CGK + K + +H + G++P ++C C GK Q +L TH
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVC---GKAFSQSSNLITH 76
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 32.1 bits (74), Expect = 0.024
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
C +C K + K L H G++P ++CP C GK +K +L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKC---GKCYFRKENLLEH 54
Score = 30.2 bits (69), Expect = 0.13
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLEC---GKEPRYQCPHCPYRGK---QKVHLKTH 68
+ C CGK Y K +L H C ++ + C C + +++ L+ H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVC---QETFRRRMELRLH 85
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 31.3 bits (72), Expect = 0.027
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y CD CGK + L +HR G++P Y+C C GK Q+ HL H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC---GKAFIQRSHLIGH 65
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 31.3 bits (72), Expect = 0.038
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
YTCD C K ++ + L HR + ++P ++C C GK Q L H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQEC---GKGFCQSRTLAVH 92
Score = 29.7 bits (68), Expect = 0.15
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
+ C CG+ + +L H + P Y C C K ++ HL+ H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDIC---HKAFRRQDHLRDH 64
Score = 25.5 bits (57), Expect = 4.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C CGK + R+L H+TL
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSS-PTA 104
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 30.1 bits (69), Expect = 0.058
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTHVAIKHQG 75
+ C+ C + + + L RH ++P Y C C + ++ L H H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLC---NRAFTRRDLLIRHAQKIHSG 56
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.4 bits (70), Expect = 0.062
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQG 75
++ C C + SL +H E CP C HV KH
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 31.6 bits (73), Expect = 0.072
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y C CGK + K+ L RH+ G++P Y+CP C GK Q+ +L+ H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPEC---GKSFSQRANLRAH 96
Score = 30.1 bits (69), Expect = 0.19
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y C CGK + + +L H+ G++P Y CP C GK Q HL+ H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKP-YACPEC---GKSFSQLAHLRAH 124
Score = 29.3 bits (67), Expect = 0.41
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y C CGK + + +L+ H+ G++P Y+CP C GK ++ L H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPEC---GKSFSRRDALNVH 180
Score = 29.3 bits (67), Expect = 0.44
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y C CGK + L H+ G++P Y+CP C GK K L H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPEC---GKSFSDKKDLTRH 68
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 29.7 bits (68), Expect = 0.096
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y C CGK + L +H+ + G++P Y+C C GK Q L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLEC---GKAFSQNSGLINH 61
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 28.7 bits (63), Expect = 0.098
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKH 73
YQC +C +R +LKTH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.8 bits (66), Expect = 0.13
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKH 73
+C +C V + + C +E + C HC + + +K HV H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANH 86
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.9 bits (66), Expect = 0.14
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 20 RYTCDSCGKV-YKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKH 73
C +C V K L +H + + +C HC + K K L H +H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 30.3 bits (69), Expect = 0.14
Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH------CPYRGK---QKVHLKTH 68
SC + + L H T+E Q H CP GK K L H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHV-GGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.7 bits (66), Expect = 0.18
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 34 RSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGPEM 78
+ H E Y+C +C ++ HV +H +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVL 47
Score = 27.4 bits (60), Expect = 0.93
Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 6 NLPPHTLFNPLLQFRYTCDSCGKVYKLKRSLYRHRTLE---CGKEPRYQCPHCPYRGKQK 62
+ H N ++ Y C C H E Y C C + K+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 63 VHLKTHVAIKHQGPEMLSVK 82
L H H G E +
Sbjct: 64 DALSEHNLKYHPGEENFKLT 83
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 29.1 bits (66), Expect = 0.21
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 21 YTCD--SCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKH 73
Y C C K + L L RH + G + C + GK HVA H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 29.2 bits (65), Expect = 0.22
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 18 QFRYTCDSCGKVYKLKRSLYRHRT---LECGKEPRYQC--PHCPYRGK---QKVHLKTHV 69
Q SC + + L H T + ++ + C CP GK K L H+
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 29.0 bits (66), Expect = 0.24
Identities = 16/81 (19%), Positives = 19/81 (23%), Gaps = 29/81 (35%)
Query: 18 QFRYTCDSCGKVYKLKRSLYRH-RT-----------LECGK-----------------EP 48
CGK Y L H RT CG
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 49 RYQCPHCPYRGKQKVHLKTHV 69
+QC C + HL H+
Sbjct: 65 PFQCQKCDRAFSRSDHLALHM 85
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 29.3 bits (67), Expect = 0.25
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
Y C CGK + K RH ++ G P Y C C GK K HL H
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVC---GKKFKMKHHLVGH 56
Score = 28.9 bits (66), Expect = 0.26
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC 55
Y C CGK +K+K L H + G +P Y+C C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNIC 71
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 29.9 bits (68), Expect = 0.26
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 19 FRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHV 69
F C +C K+ KL + + + + + P P CP G K ++
Sbjct: 153 FEAVCCTCNKIVKLNKIMLQKTSHFMHQLP----PECPCGG----IFKPNI 195
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 28.6 bits (65), Expect = 0.32
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTH 68
+ C C + + L H G++P + C C G+ + K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDIC---GRKFARSDERKRH 50
Score = 27.5 bits (62), Expect = 0.87
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 14/56 (25%)
Query: 21 YTCDSCGKVYKLKRSLYRHR---TLECGKEPRYQCPHCPYRGK---QKVHLKTHVA 70
+ CD CG+ + RHR + + HL+ VA
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-----ILPILEDKV---EELLSKNYHLENEVA 79
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 28.2 bits (64), Expect = 0.37
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGK---QKVHLKTHVAIKHQG 75
+ C C + + L H G++P + C C G+ + K H I H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDIC---GRKFARSDERKRHTKI-HLR 87
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 27.2 bits (60), Expect = 0.46
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC 55
+ C+ CGK+++ L RH+ G++P Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 29.1 bits (66), Expect = 0.55
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 10/51 (19%)
Query: 19 FRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHV 69
+ C C + Y + G+ PR C C +K V
Sbjct: 122 DKLDCLDCHETYDWSEFVED---FNKGEIPR--CRKC--GSYY---VKPRV 162
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 27.2 bits (61), Expect = 0.62
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 21 YTCDSCGKVYKLKRSLYRH-RTLECGKEPRYQCPHC 55
Y C SCGK + L H + + + P ++C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVW 47
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 28.7 bits (65), Expect = 0.62
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLEC---GKEPRYQCPHC--PYRGK---QKVHLKTHV 69
D C + + + L H E ++ + C + + L H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 28.6 bits (65), Expect = 0.83
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 19 FRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC 55
Y C C K Y ++ + LE P C C
Sbjct: 120 EEYYCVRCEKKYTVE---DVIKKLESSDVPL--CDDC 151
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.92
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
+ C CGK + L +HR + G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSS 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGK + ++ SL H+ + GK+P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP-SGPSS 45
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 28.2 bits (63), Expect = 1.1
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 8/38 (21%)
Query: 18 QFRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC 55
++ C CG R E PRY CP C
Sbjct: 2 HMKF-CSQCG-------GEVILRIPEGDTLPRYICPKC 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.1
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y+C+ CGK + L L +H + +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS 45
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 1.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK +K K SL HR G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + ++SL H+ + GK+P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSS 45
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.3
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGKV+ L RHR + G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP-SGPSS 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 1.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK + +R LY H + G++P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y CD CGK + L L RH+ + G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGK + L RH+ + G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP-SGPSS 45
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 27.9 bits (63), Expect = 1.5
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 14/51 (27%)
Query: 19 FRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHV 69
C SC ++++ + + P+ C C L+ V
Sbjct: 120 RVVRCTSCNNSFEVESA------PKIPPLPK--CDKCGSL------LRPGV 156
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGKV+ L RHR + G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGK + + SL H+ + G++P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSS 45
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ CD CGK + + L RH + ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.7
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y CD C K + SL +H+ + G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 25.6 bits (57), Expect = 1.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
+ C CGK + + +L H L G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSS 45
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 26.1 bits (58), Expect = 1.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 21 YTCD--SCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHV 69
Y C SC + + L RH + G++P +QC C + HL TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGK + L RH+ + G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP-SGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y CD C K ++ SL H+ + G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.8
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + S +H+ L G+ P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP-SGPSS 45
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGKV+ L RHR + G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP-SGPSS 45
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.9
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + ++ +L +H+ + ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.0
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y CD CGK + L H+ + G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK Y K +L H+ + G+ P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 26.2 bits (57), Expect = 2.1
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 80 SVKHQGPEMLSIKHQGPETLSIKHQVSEMLSIKHQGPETLSIKHQGPEMLSIKHQGPESA 139
V QG + +K Q + + +V+++L +K Q + P+ K GP S
Sbjct: 21 EVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKG-KKKKSGPSSG 79
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGKV+ L RHR + G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS 45
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 27.2 bits (61), Expect = 2.2
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 21 YTC--DSCGKVYKLKRSLYRHRTLECGKEPR--YQCPHCPYRGKQKVHLKTHVAIKHQ 74
Y C + C K + L L RH + G + C GK HVA HQ
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV---GKTWTLYLKHVAECHQ 189
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 2.3
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + + +L +H+ + G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSS 45
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 2.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKHQG 75
Y+CP C Y K +L H+ KH G
Sbjct: 10 YKCPQCSYASAIKANLNVHLR-KHTG 34
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 27.4 bits (61), Expect = 2.4
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 5/45 (11%)
Query: 8 PPHTLFNPLLQFRYTCDSCGKVYKLKRSLYRHRTLECGK--EPRY 50
F+ + Y L +YR G + +
Sbjct: 34 NAVNPFSAKYVPFNAAPGSTESYSLDEIVYRS---RSGGLLDVEH 75
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 27.4 bits (61), Expect = 2.4
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 4/41 (9%)
Query: 19 FRYTCDSCGKVY---KLKRSLYRHRTLE-CGKEPRYQCPHC 55
F C C Y + ++ T C C
Sbjct: 137 FVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRAC 177
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 27.3 bits (61), Expect = 2.5
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 4/41 (9%)
Query: 19 FRYTCDSCGKVY---KLKRSLYRHRTLE-CGKEPRYQCPHC 55
F C C Y + ++ T C C
Sbjct: 137 FVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRAC 177
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 25.2 bits (56), Expect = 2.6
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK ++ L +H+ + G++P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP-SGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + K +L +H+ + G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP-SGPSS 45
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.7
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
+ C+ CGK + L +H+ + G++P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSS 45
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
+ C CGK + L H+ + G+ P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP-SGPSS 45
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGKV++ L RH+ + G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 27.0 bits (60), Expect = 2.8
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 19 FRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC 55
C CGKVY + + + C C
Sbjct: 135 AHCHCIGCGKVYPPQVFKSKLAEHPIKDFVK--CDVC 169
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 24.8 bits (55), Expect = 3.1
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C CGK ++ K +L H+ + G++
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.9 bits (53), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 23 CDSCGKVYKLKRSLYRHRTLECGK 46
C CGK+++ L H+ L G+
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.3
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + K L+ H+ + G++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP-SGPSS 45
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 27.1 bits (60), Expect = 3.4
Identities = 11/75 (14%), Positives = 25/75 (33%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGPEML 79
+ TC CG+V + + ++ + + R+ K H G +
Sbjct: 95 KATCRRCGRVKISEDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQF 154
Query: 80 SVKHQGPEMLSIKHQ 94
+K + P + +
Sbjct: 155 KIKLEKPYNFYEERK 169
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.5
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK +++ L +H ++ G+ P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.5
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK ++ + SL H+ G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP-SGP 43
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P
2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Length = 48
Score = 25.0 bits (54), Expect = 3.6
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 9/54 (16%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKH 73
Y C C K + + + P +CP+C Y+ V T +K
Sbjct: 3 VYRCGKCWKTFTDE---------QLKVLPGVRCPYCGYKIIFMVRKPTIKIVKA 47
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 25.9 bits (58), Expect = 3.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH--CPYRGK---QKVHLKTHVAI 71
+ C CGK + L RH+ + G++P +QC C GK +L+THV I
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGC---GKRFSLDFNLRTHVRI 86
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 26.9 bits (59), Expect = 3.8
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 19 FRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC 55
C CGKVY + + + C C
Sbjct: 143 AHCHCIGCGKVYPPQVFKSKLAEHPIKDFVK--CDVC 177
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.8
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK + K L RHR + G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP-SGP 43
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 3.8
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 117 ETLSIKH-QGPEMLSIKHQGPESA 139
E ++K Q S+K +SA
Sbjct: 18 EKQALKKLQA----SLKLYADDSA 37
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 25.2 bits (56), Expect = 3.8
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 21 YTCD--SCGKVYKLKRSLYRH-RTLECGKEPRYQCPH--CPYRGKQKVHLKTHVAIKHQG 75
CD CG+++ ++ L H + ++ + CP C K HLK H+ + H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKL-HSD 65
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.9
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + + +L+ H+ + G++P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP-SGPSS 45
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 3.9
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C+ CGK + Y H+ G++P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP-SGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.0
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + K L H+ G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP-SGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.0
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK ++ +L H+ + G++P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP-SGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.1
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK + L +H ++P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP-SGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 24.4 bits (54), Expect = 4.1
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C+ CGKV+ L +H+ + G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP-SGPSS 45
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK + L +H L G++P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP-SGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.2
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK Y + +L H+ + G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.2
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK YK + L H+ + G++
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKL-SGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 24.4 bits (54), Expect = 4.2
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
+ C CGK + + L H+ + G++P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP-SGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 24.4 bits (54), Expect = 4.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + L +H+ + G++P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP-SGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.4
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C+ C K + SL H+ + G++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP-SGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 24.4 bits (54), Expect = 4.4
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 21 YTCDSCGKVYKLKRSLYRH-RTLECGKEPRYQCP 53
Y C CGK + SL RH R G++P
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKP-SGPS 45
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 24.6 bits (53), Expect = 4.5
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 44 CGKEPRYQCPHC 55
C ++P+Y+CP C
Sbjct: 18 CLEKPKYRCPAC 29
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.6
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK + K L H+ G+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERH-SGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.7
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C+ CGK + L+ H+ + G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP-SGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.8
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGKV+ L H + G++P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP-SGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + K +L H+ + G++P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP-SGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK + L H+ + G++P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP-SGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 5.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + K L+ H+ + G+ P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP-SGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 5.0
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGKV+ L H+ + G +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP-SGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 5.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK + K L H+ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 24.0 bits (53), Expect = 5.3
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK + K L H+ G+
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESG-PSS 41
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 5.5
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C C + SL H+ + G++P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKP-SGP 43
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 25.6 bits (55), Expect = 5.6
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 2/59 (3%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGPEM 78
C C + H + + + C C K + H H M
Sbjct: 42 AAVCPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 26.4 bits (57), Expect = 5.6
Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 25/108 (23%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKHQGPEMLSVKHQGP-------------EMLSIKHQGP 96
C +C R K H G + GP + +
Sbjct: 245 QYCFNCMNREVVTDLYKFKEKCPHCGSKF---HIGGPLWIGKLWDEEFTNFLYEEAQKRE 301
Query: 97 ETLSIKHQVSEMLSIKHQGPETL---------SIKHQGPEMLSIKHQG 135
E ++ +++ + Q +K + I +
Sbjct: 302 EIEKETKRILKLIKEESQLQTVGFYVLSKLAEKVKLPAQPPIRIAVKF 349
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 5.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRH 39
+ C CG+ + LK L +H
Sbjct: 13 HQCHECGRGFTLKSHLNQH 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 5.9
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 75 GPEMLSVKHQGPEMLSIKHQGPETLSIKHQVSEML--SIKHQGPETLSI-KHQGPEMLSI 131
G +L + P L+I G + I+ S M+ +I +T I K S
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 132 KHQGPESAFDLRRNNQ 147
+ + + Q
Sbjct: 1718 TFRSEKGLLSATQFTQ 1733
Score = 26.2 bits (57), Expect = 6.2
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 32/106 (30%)
Query: 76 PEML--SVKH-QGPE--MLSIKHQGPETLSIKHQVSEMLS-IKHQGPET--LSIK-HQGP 126
P +L S+++ +G MLSI + L+ + QV + ++ P + I G
Sbjct: 321 PSILEDSLENNEGVPSPMLSISN-----LTQE-QVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 127 EMLSIKHQG-PES--AFD--LRR------NNQAHLNGRKDMMERLP 161
+ L + G P+S + LR+ +Q+ R ER
Sbjct: 375 KNLVV--SGPPQSLYGLNLTLRKAKAPSGLDQS----RIPFSERKL 414
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 6.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 21 YTCDSCGKVYKLKRSLYRH 39
+ C CG + SL++H
Sbjct: 13 FQCKECGMNFSWSCSLFKH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C CGKV+ K +L H+ + G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.4
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C+ CGK + + L H L ++
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.6
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
+ C CGK Y + L +H+ + G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSS 45
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR
{Mus musculus} SCOP: g.44.1.6
Length = 52
Score = 24.3 bits (53), Expect = 6.7
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 16/39 (41%)
Query: 18 QFRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCP 56
+F YTC+ C E R+ C C
Sbjct: 4 RFVYTCNECKHHV----------------ETRWHCTVCE 26
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 6.9
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
C CGK + K L H+ +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 7.0
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C+ CGK + L+ H+ + G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP-SGP 43
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 23.5 bits (50), Expect = 7.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 50 YQCPHCPYRGKQKVHLKTHV 69
+ CP CP R + L H+
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.6 bits (50), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTL 42
+ CD CGK +K K +L H+ L
Sbjct: 9 THLCDMCGKKFKSKGTLKSHKLL 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 7.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRH 39
+TCD CGK + +L H
Sbjct: 13 HTCDECGKNFCYISALRIH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 23.7 bits (52), Expect = 7.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y CD CGK + K SL H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.9
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C C K + K L +H+ G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP-SGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
+ C CGK + K +L H+ + G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSS 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGKV++ L RH+ + G++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP-SGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.3
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPH 54
Y C CGK + K +L H+ + G++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP-SGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.6
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C CGK ++ L H + G++P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP-SGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.6
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK + L HR + G P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP-SGP 43
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1
g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I
1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I*
1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I
1y77_I* ...
Length = 122
Score = 25.2 bits (54), Expect = 8.6
Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 7/72 (9%)
Query: 23 CDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGPEMLSVK 82
C C + + +R ++C C Y + L + E V
Sbjct: 7 CRDCNNMLYPREDKENNRL-------LFECRTCSYVEEAGSPLVYRHELITNIGETAGVV 59
Query: 83 HQGPEMLSIKHQ 94
++
Sbjct: 60 QDIGSDPTLPRS 71
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 23.6 bits (52), Expect = 8.7
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
+ C C K + K L H+ ++P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.9
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C+ CGK + L H ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 25.7 bits (56), Expect = 8.9
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y D + + K+ R+R + P
Sbjct: 37 YIDDFTLQYFGSKKQYERYRKKCTLRHP 64
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 25.5 bits (56), Expect = 9.1
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 23 CDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGPEMLSVK 82
+ ++ + LE + C G Q L T AI + +L +
Sbjct: 34 FEEIRQIAAEMLVEPSGQPLE-----VVKDLFCNETGYQTPKLDTRAAIFQEDKILLVQE 88
Query: 83 HQG 85
+ G
Sbjct: 89 NDG 91
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 9.4
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C C K + L +H+ + G+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERS-SGP 43
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKE 47
+TC+ C KV+K K SL H + ++
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 9.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK + K L+ H+ G+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH-SGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 9.8
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQC 52
Y C CGK + K L H G++P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP-SGP 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,299,099
Number of extensions: 118336
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 220
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)