RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7450
(161 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 31.6 bits (71), Expect = 0.005
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAI 71
Y C CGK + K RH + Y C C + K K HL H+ I
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 30.9 bits (69), Expect = 0.006
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKH 73
YQC +C +R +LKTH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.12
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKHQG 75
Y C C + HL H+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTS 31
Score = 25.0 bits (55), Expect = 0.98
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 21 YTCDSCGKVYKLKRSLYRH-RTLECGKEPRYQC 52
Y C SCGK + L H + + + P ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERP-HKC 37
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.3 bits (61), Expect = 0.13
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAIKH 73
Y+C C R Q +K H+ KH
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
Score = 22.6 bits (49), Expect = 5.5
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 21 YTCDSCGKVYKLKRSLYRH 39
Y C C + ++ H
Sbjct: 9 YECYICHARFTQSGTMKMH 27
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.0 bits (55), Expect = 0.70
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 47 EPRYQCPHCPYRGKQKVHLKTHVAIKH 73
E Y C HC +QK L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 22.7 bits (49), Expect = 5.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 21 YTCDSCGKVYKLKRSLYRHR 40
Y C C K ++ K+ L H
Sbjct: 9 YACSHCDKTFRQKQLLDMHF 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (55), Expect = 0.74
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 50 YQCPHCPYRGKQKVHLKTH 68
+ CP CP R + HL H
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
Score = 22.3 bits (48), Expect = 6.5
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 21 YTCDSCGKVYKLKRSLYRHR 40
+ C C K + L +H
Sbjct: 3 FACPECPKRFMRSDHLSKHI 22
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 409
Score = 26.9 bits (59), Expect = 1.4
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 41 TLECGKEPRYQCPHCPYRGKQKVHLKTHVAIKHQGPEMLSVKHQGP 86
T+E K + CP+C V + + +V G
Sbjct: 63 TMEGMKVQQRGCPYCNMPCGNVVLDAEG---QESELDYENVALLGS 105
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 26.3 bits (58), Expect = 1.5
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 21 YTCDSCGKVYKLKRSLYRHRTLECGKEP 48
Y D + + K+ R+R + P
Sbjct: 35 YIDDFTLQYFGSKKQYERYRKKCTLRHP 62
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 24.1 bits (53), Expect = 1.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 50 YQCPHCPYRGKQKVHLKTHVAI 71
+ C C ++ HLK H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
Score = 23.0 bits (50), Expect = 4.2
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 21 YTCDSCGKVYKLKRSLYRHR 40
+ C+ C + + + L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 23.7 bits (52), Expect = 1.9
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 47 EPRYQCPHCPYRGKQKVHLKTHVAIKHQG 75
E Y C C + L H + H G
Sbjct: 5 EKPYGCVECGKAFSRSSILVQHQRV-HTG 32
Score = 23.7 bits (52), Expect = 2.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 21 YTCDSCGKVYKLKRSLYRHR 40
Y C CGK + L +H+
Sbjct: 8 YGCVECGKAFSRSSILVQHQ 27
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 24.3 bits (52), Expect = 2.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 21 YTCDSCGKVYKLKRSLYRHRT 41
Y C+ C K + + S +RH T
Sbjct: 6 YECNICAKRFMWRDSFHRHVT 26
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 24.4 bits (53), Expect = 2.4
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHC 55
Y C C V+ + ++ H +L + CP C
Sbjct: 30 VYVCAVCQNVFCVDCDVFVHDSL-------HSCPGC 58
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.0 bits (50), Expect = 3.3
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 21 YTCDSCGKVYKLKRSLYRHR 40
+ C C + + L H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI 23
Score = 22.6 bits (49), Expect = 4.7
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 47 EPRYQCPHCPYRGKQKVHLKTHVAIKHQG 75
+ +QC C + HL TH+ H G
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRT-HTG 28
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.5 bits (50), Expect = 3.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 20 RYTCDSCGKVYKLKRSLYRHRTLECGKEP 48
+ C+ CGK+++ L RH+ G++P
Sbjct: 5 QVACEICGKIFRDVYHLNRHKLSHSGEKP 33
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 22.9 bits (50), Expect = 3.8
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 21 YTCDSCGKVYKLKRSLYRHR 40
Y C CGK + L H+
Sbjct: 3 YKCLECGKAFSQNSGLINHQ 22
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 23.3 bits (50), Expect = 4.4
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 16/38 (42%)
Query: 19 FRYTCDSCGKVYKLKRSLYRHRTLECGKEPRYQCPHCP 56
F YTC+ C E R+ C C
Sbjct: 5 FVYTCNECKHHV----------------ETRWHCTVCE 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 22.8 bits (49), Expect = 4.7
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 47 EPRYQCPHCPYRGKQKVHLKTHVAI 71
+ + C C K + H+ +
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKV 29
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 38
Score = 22.8 bits (49), Expect = 4.8
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 20 RYTCDSCGKVY 30
R + G+ Y
Sbjct: 2 RLIHPASGRSY 12
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Bacillus globisporus
[TaxId: 1459]}
Length = 35
Score = 23.0 bits (50), Expect = 4.8
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 20 RYTCDSCGKVY 30
R C CG Y
Sbjct: 2 RRICKVCGTSY 12
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 22.8 bits (49), Expect = 4.9
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 21 YTCD--SCGKVYKLKRSLYRHRTLECGKEPRYQC 52
++C +CGK + K+ L H L Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YIC 34
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 5.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 49 RYQCPHCPYRGKQKVHLKTHVAIKH 73
++ CPHC +K L H+ +H
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQH 26
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 35
Score = 22.7 bits (49), Expect = 5.1
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 20 RYTCDSCGKVY 30
R C +CG Y
Sbjct: 2 RRICRNCGATY 12
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 23.5 bits (50), Expect = 5.5
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 21 YTCDSCGKVY------KLKRSLYRHRTLECGKEPRYQCPHCPYR 58
C+ C + + + +R + K R +C +C +
Sbjct: 17 SACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ 60
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 23.8 bits (51), Expect = 5.7
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 21 YTCDSCGKVY------KLKRSLYRHRTLECGKEPRYQCPHCPYR 58
+C++C + ++ S E K R C C +
Sbjct: 22 ASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFM 65
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 22.8 bits (49), Expect = 5.7
Identities = 6/34 (17%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 38 RHRTLECGKEPRYQCPHCPYRGKQKVHLKTHVAI 71
R + + Y+C C L H
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 22.3 bits (48), Expect = 6.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 21 YTCDSCGKVYKLKRSLYRHRT 41
Y C+ C K K + L +H
Sbjct: 8 YLCEFCLKYMKSRTILQQHMK 28
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 24.4 bits (53), Expect = 7.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 21 YTCDSCGKVYKLKRSLYRHR 40
+ C+ C K K ++S H
Sbjct: 32 WLCEYCLKYMKYEKSYRFHL 51
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 23.1 bits (50), Expect = 7.4
Identities = 4/15 (26%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 20 RYTCDSCGKVYKLKR 34
+ C +CG+ ++ R
Sbjct: 27 DHACPNCGED-RVDR 40
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Escherichia coli [TaxId:
562]}
Length = 35
Score = 22.0 bits (47), Expect = 9.8
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 20 RYTCDSCGKVY 30
R G+VY
Sbjct: 2 RRVHAPSGRVY 12
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 578,106
Number of extensions: 24458
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 72
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)