RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7453
         (200 letters)



>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain. 
          Length = 26

 Score = 32.4 bits (74), Expect = 0.010
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 163 MRSHIRTHTGEKPYACGQCAFRSAS 187
           +R H+RTHTGEKPY C  C    +S
Sbjct: 2   LRRHMRTHTGEKPYKCPVCGKSFSS 26


>gnl|CDD|221766 pfam12773, DZR, Double zinc ribbon.  This family consists of a pair
           of zinc ribbon domains.
          Length = 45

 Score = 28.2 bits (63), Expect = 0.38
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 9/39 (23%)

Query: 79  CKHCHSQLSHLDLLDHCKTCSYMIRPNANNTFSPFCIYC 117
           C HC + L        C +C   + PNA      FC  C
Sbjct: 15  CPHCGTSLPPR----ECPSCGAPVDPNAR-----FCPNC 44


>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
           Provisional.
          Length = 645

 Score = 30.4 bits (69), Expect = 0.73
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 9/56 (16%)

Query: 75  NHSLCKHCHSQLSHLDLLDHCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIE 130
           N+  C+ C + L+H      C  C   +  +  +     C  C A   T    +I 
Sbjct: 14  NNRFCQKCGTSLTH----KPCPQCGTEVPVDEAH-----CPNCGAETGTIWWAIIA 60


>gnl|CDD|197822 smart00661, RPOL9, RNA polymerase subunit 9. 
          Length = 52

 Score = 26.6 bits (59), Expect = 2.1
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 132 CRTCKSM--IRTDPFRHKFVCYACDY 155
           C  C +M   R    + +FVC  C Y
Sbjct: 3   CPKCGNMLYPREGKEKRRFVCRKCGY 28


>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
           transition [Transcription / Cell division and chromosome
           partitioning].
          Length = 423

 Score = 28.1 bits (62), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 173 EKPYACGQCAFRSASVAGLHYHLKKTYH 200
           +KPY C  C  R  ++ GL YH K ++ 
Sbjct: 396 DKPYRCEVCDKRYKNLNGLKYHRKHSHD 423


>gnl|CDD|223848 COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid
           metabolism].
          Length = 294

 Score = 28.0 bits (63), Expect = 3.4
 Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 132 CRTCKSMI-RTDPFRHKFVCYACDYFS 157
           C +C  M+ R +   +  VC  C +  
Sbjct: 31  CPSCGEMLYRKELESNLKVCPKCGHHM 57


>gnl|CDD|188029 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. 
           Members of this family of GHMP kinases were previously
           designated as conserved hypothetical protein YchB or as
           isopentenyl monophosphate kinase. It is now known, in
           tomato and E. coli, to encode
           4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an
           enzyme of the deoxyxylulose phosphate pathway of
           terpenoid biosynthesis [Biosynthesis of cofactors,
           prosthetic groups, and carriers, Other].
          Length = 294

 Score = 27.5 bits (61), Expect = 4.5
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 112 PFCIYCKAVLSTNLNELIEHCRT 134
           PF +      +T   E+I     
Sbjct: 141 PFFVSGGTAFATGRGEIITPFED 163


>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown].
          Length = 552

 Score = 27.7 bits (62), Expect = 5.1
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 2   LVTITPTLAKVFLVILEPTLERNRTNITSDVYIAVLVFSNLTFFITAQLVL 52
           L   T  ++   L+         +      +Y  +L+ S LT +  A  V+
Sbjct: 172 LAVATTLISATLLLRAIRLPTSRKLLPGWLIYALLLILSLLTHYFFALTVI 222


>gnl|CDD|235547 PRK05654, PRK05654, acetyl-CoA carboxylase subunit beta; Validated.
          Length = 292

 Score = 27.1 bits (61), Expect = 6.0
 Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 132 CRTCKSMI-RTDPFRHKFVCYACDY 155
           C +C  ++ R +   +  VC  C +
Sbjct: 30  CPSCGQVLYRKELEANLNVCPKCGH 54


>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
           recombination, and repair].
          Length = 292

 Score = 26.9 bits (59), Expect = 7.4
 Identities = 8/46 (17%), Positives = 16/46 (34%)

Query: 104 PNANNTFSPFCIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRHKFV 149
                  +P C  C  +   +  E       C+S   + P ++K +
Sbjct: 109 ILLPIALAPKCKECLQIELDDELEDTFGISVCRSCRHSMPDKYKLL 154


>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator
           protein [GAP] for Rho-like small GTPases) domain of
           ArhGAP19-like proteins. The function of ArhGAP19 is
           unknown. Small GTPases cluster into distinct families,
           and all act as molecular switches, active in their
           GTP-bound form but inactive when GDP-bound. The Rho
           family of GTPases activates effectors involved in a wide
           variety of developmental processes, including regulation
           of cytoskeleton formation, cell proliferation and the
           JNK signaling pathway. GTPases generally have a low
           intrinsic GTPase hydrolytic activity but there are
           family-specific groups of GAPs that enhance the rate of
           GTP hydrolysis by several orders of magnitude.
          Length = 208

 Score = 26.7 bits (59), Expect = 7.8
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 8   TLAKVFLVIL-EPTLERNRTNITSDVYIAVLVFSNLTFFITAQLVLMSLDQILNLNLSVL 66
           T+ K FL  L EP L       T   Y A L  ++L  F        + D+   L    L
Sbjct: 66  TVLKGFLGELPEPLL-------THAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQL 118

Query: 67  LVTTIPTQNHSLCKHCHSQLSHLDLLDHCKTCSYMIRPNANN---TFSPFCIYCKAVLST 123
           L+  +P +N +L K        LDLL          + +A+N    F+P  I  + +   
Sbjct: 119 LLLLLPEENRNLLKLI------LDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNLTPE 172

Query: 124 NLNELIEH 131
           +L+E  + 
Sbjct: 173 DLHENAQK 180


>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing
           protein; Provisional.
          Length = 697

 Score = 27.1 bits (60), Expect = 8.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 73  TQNHSLCKHCHS 84
           TQ+H +CK CH 
Sbjct: 651 TQSHRICKDCHK 662


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,440,663
Number of extensions: 812202
Number of successful extensions: 1046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 37
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.4 bits)