RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7453
(200 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 47.9 bits (115), Expect = 3e-08
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 150 CYACDY-FSYNIGCMRSHIRTHTGEKPYACGQCAFRSASVAGLHYHLKK 197
C C Y S +R H R H ++P+ C C+F + + L H+KK
Sbjct: 12 CSECSYSCSSK-AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 40.6 bits (96), Expect = 1e-05
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 168 RTHTGEKPYACGQCAFRSASVAGLHYH 194
+ + P C +C++ +S A L H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
Score = 30.9 bits (71), Expect = 0.046
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 150 CYACDYFSYNIGCMRSHIRTHTGEKPYAC 178
C C + + + H++ G+
Sbjct: 40 CNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.9 bits (108), Expect = 1e-07
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 147 KFVCYACDYFSYNIGCMRSHIRTHTGEKPYACGQCAFRSASVAGLHYHLKK 197
K++C C ++ HIRTHT +PY C C F + L H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 31.6 bits (71), Expect = 0.022
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 136 KSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEK 174
K IRT + C C++ G + H+++ K
Sbjct: 18 KKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.2 bits (103), Expect = 1e-06
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TG KPY C +C AFRS S +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 37.5 bits (88), Expect = 1e-04
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 166 HIRTHTGEKPYACG 179
H RTHTGE + G
Sbjct: 31 HTRTHTGESGPSSG 44
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 44.1 bits (105), Expect = 1e-06
Identities = 21/42 (50%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 161 GCMRSHIRTHTGEKPYACGQC--AFRSASVAGLHYHLKKTYH 200
G S RTHTGEKPYAC C FR L H K YH
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQ--LLDMH-FKRYH 39
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/57 (21%), Positives = 14/57 (24%), Gaps = 9/57 (15%)
Query: 128 LIEHCRTCKSMIRTDPFRHK--FVCYACD-YFSYNIGCMRSHIRTHTGEKPYACGQC 181
L H + DP FVC C F+ M H G
Sbjct: 31 LDMHFK-----RYHDPNFVPAAFVCSKCGKTFTRR-NTMARHADNCAGPDGVEGENS 81
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 161 GCMRSHIRTHTGEKPYACGQC 181
G S RTH+GEKPY C C
Sbjct: 1 GSSGSSGRTHSGEKPYECYIC 21
Score = 40.2 bits (95), Expect = 2e-05
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 11/56 (19%)
Query: 151 YACDY----FSYNIGCMRSHIRTHTGE--KPYACGQC--AFRSASVAGLHYHLKKT 198
Y C F+ + G M+ HI E + C C S L HL+K
Sbjct: 16 YECYICHARFTQS-GTMKMHILQKHTENVAKFHCPHCDTVIARKS--DLGVHLRKQ 68
Score = 31.0 bits (71), Expect = 0.050
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 148 FVCYACD-YFSYNIGCMRSHIRT-HTGEKPYA 177
F C CD + + H+R H+ P +
Sbjct: 46 FHCPHCDTVIARK-SDLGVHLRKQHSYSGPSS 76
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.6 bits (101), Expect = 2e-06
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYHLK 196
S + TGEKP+ C +C F + L HL+
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSC--SLFKHLR 33
Score = 35.6 bits (83), Expect = 5e-04
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYACGQ 180
FS++ + H+R+H P
Sbjct: 22 FSWS-CSLFKHLRSHERTDPSGPSS 45
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 164 RSHIRTHTGEKPYACGQC--AFRSASVAGLHYHLKK 197
+HIRTHTGEKP+AC C F + K+
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSD------ERKR 49
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/54 (12%), Positives = 11/54 (20%), Gaps = 5/54 (9%)
Query: 148 FVCYACD-YFSYNIGCMRSHIRTHTGEKPYACGQC--AFRSASVAGLHYHLKKT 198
F C C F+ + + H P + K
Sbjct: 32 FACDICGRKFARS-DERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKK 83
Score = 26.7 bits (60), Expect = 2.0
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 157 SYNIGCMRSHIRTHTGEK 174
+Y++ + ++ GE+
Sbjct: 71 NYHLENEVARLKKLVGER 88
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 42.2 bits (100), Expect = 3e-06
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TGEKPY C +C +FR AS H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 36.0 bits (84), Expect = 4e-04
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYACGQ 180
F + C+ H R H+GEKP
Sbjct: 22 FRWA-SCLLKHQRVHSGEKPSGPSS 45
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 3e-06
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + TGEKPY C C AF S GLH H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKS--GLHIH 31
Score = 34.4 bits (80), Expect = 0.002
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 164 RSHIRTHTGEKPYAC 178
H ++HTGE+
Sbjct: 29 HIHQQSHTGERHSGP 43
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 42.1 bits (100), Expect = 3e-06
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 166 HIRTHTGEKPYACGQC--AFRSASVAGLHYHLKKT 198
H R+HT EKPY CG C AF + L H +K
Sbjct: 21 HYRSHTNEKPYPCGLCNRAFTRRDL--LIRHAQKI 53
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 3e-06
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TGEKPY C +C AFR+ S +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 34.1 bits (79), Expect = 0.002
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H TH+GEKP
Sbjct: 31 HQATHSGEKPSGP 43
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 164 RSHIRTHTGEKPYACGQC 181
+HIRTHTGEKP+AC C
Sbjct: 51 TTHIRTHTGEKPFACDIC 68
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 164 RSHIRTHTGEKPYACGQC--AFRSASVAGLHYHLKK 197
HIR HTG+KP+ C C F + HL
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSD------HLTT 52
Score = 26.7 bits (60), Expect = 2.1
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 164 RSHIRTHTGEK 174
+ H + H +K
Sbjct: 79 KRHTKIHLRQK 89
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 5e-06
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEK Y C +C +F A
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAP 26
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYAC 178
FS C+ H R H+GEKP
Sbjct: 22 FSRA-PCLLKHERLHSGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 5e-06
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + +GEK + C +C F S L H
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISA--LRIH 31
Score = 31.8 bits (73), Expect = 0.015
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 151 YACDY----FSYNIGCMRSHIRTHTGEKPYAC 178
+ CD F Y +R H R H GEK
Sbjct: 13 HTCDECGKNFCYI-SALRIHQRVHMGEKCSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 5e-06
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + TGEKP+ C C AF GL+ H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHI--GLNQH 31
Score = 33.3 bits (77), Expect = 0.004
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HRRIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-06
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C AF S
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDS 26
Score = 33.3 bits (77), Expect = 0.004
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-06
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C AFR+ S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHS 26
Score = 32.5 bits (75), Expect = 0.008
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H HTGEKP
Sbjct: 31 HQVIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.9 bits (97), Expect = 6e-06
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TGEKPY C +C AF + S +H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 36.7 bits (86), Expect = 2e-04
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 166 HIRTHTGEKPYACG 179
H RTHTGE + G
Sbjct: 31 HQRTHTGESGPSSG 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-06
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + GEKPY C +C AF S S +H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 35.2 bits (82), Expect = 8e-04
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 166 HIRTHTGEKPYAC 178
H+RTH+GEKP
Sbjct: 31 HMRTHSGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 6e-06
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TG++PY C +C AF++ S
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKS 26
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 166 HIRTHTGEKPYAC 178
H R+HTGEKP
Sbjct: 31 HRRSHTGEKPSGP 43
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 42.0 bits (100), Expect = 6e-06
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 150 CYACDY-FSYNIGCMRSHIRTHTGEKPYACGQC--AFRSAS 187
C CDY + + + H+R H+ E+P+ C C A R++S
Sbjct: 39 CKTCDYAAADS-SSLNKHLRIHSDERPFKCQICPYASRNSS 78
Score = 41.6 bits (99), Expect = 1e-05
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 164 RSHIRTHTGEKPYACGQC--AFRSAS 187
++H+R HTG KPY C C A +S
Sbjct: 25 KTHMRCHTGVKPYKCKTCDYAAADSS 50
Score = 37.0 bits (87), Expect = 5e-04
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 150 CYACDY-FSYNIGCMRSHIRTHTGEKPYACG 179
C C Y + + H+R+HTG+ + G
Sbjct: 67 CQICPYASRNS-SQLTVHLRSHTGDSGPSSG 96
Score = 35.9 bits (84), Expect = 0.001
Identities = 4/21 (19%), Positives = 6/21 (28%), Gaps = 2/21 (9%)
Query: 169 THTGEKPYACGQC--AFRSAS 187
+ P+ C C F
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKD 22
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 42.5 bits (101), Expect = 7e-06
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 15/55 (27%)
Query: 151 YACDY------FSYNIGCMRSHIRTHTGEKPYACGQC--AFRSASVAGLHYHLKK 197
Y CD+ FS + ++ H R HTG KP+ C C F + HLK
Sbjct: 37 YQCDFKDCERRFSRS-DQLKRHQRRHTGVKPFQCKTCQRKFSRSD------HLKT 84
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 151 YACDY------FSYNIGCMRSHIRTHTGEKPYAC--GQC 181
+ C Y + ++ H R HTGEKPY C C
Sbjct: 7 FMCAYPGCNKRYFKL-SHLQMHSRKHTGEKPYQCDFKDC 44
Score = 38.3 bits (90), Expect = 3e-04
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 148 FVCYACD-YFSYNIGCMRSHIRTHTGEKPYAC--GQC 181
F C C FS + +++H RTHTGEKP++C C
Sbjct: 67 FQCKTCQRKFSRS-DHLKTHTRTHTGEKPFSCRWPSC 102
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 42.4 bits (101), Expect = 7e-06
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 166 HIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
H++ HTG KPY C C F H H
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRD--SFHRH 84
Score = 40.9 bits (97), Expect = 3e-05
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
H+ H G +PY CG C F+
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKH 51
Score = 40.1 bits (95), Expect = 5e-05
Identities = 5/24 (20%), Positives = 7/24 (29%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
H + K Y + AS
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEAS 105
Score = 34.7 bits (81), Expect = 0.005
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 168 RTHTGEKPYACGQC--AFRSAS 187
+G+K Y C QC +F S
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKS 23
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 7e-06
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + TGEKPY C +C AF S L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRS--NLFTH 31
Score = 32.9 bits (76), Expect = 0.005
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 164 RSHIRTHTGEKPYAC 178
+H + HTGEKP
Sbjct: 29 FTHQKIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 7e-06
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TGEKPY C C +FR S +H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 33.6 bits (78), Expect = 0.002
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 151 YACD----YFSYNIGCMRSHIRTHTGEKPYAC 178
Y CD F Y + H R HTGEKP
Sbjct: 13 YKCDVCHKSFRYG-SSLTVHQRIHTGEKPSGP 43
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 42.1 bits (100), Expect = 7e-06
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 166 HIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
H +H+GEKPY+C C F+ + YH
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKD--RMSYH 54
Score = 38.6 bits (91), Expect = 1e-04
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 163 MRSHIRTHTGE--KPYACGQC--AFRSASVAGLHYHLKKT 198
M H+R+H G KPY C C F L+ H+K+
Sbjct: 51 MSYHVRSHDGSVGKPYICQSCGKGFSRPD--HLNGHIKQV 88
Score = 35.2 bits (82), Expect = 0.002
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 2/20 (10%)
Query: 170 HTGEKPYACGQC--AFRSAS 187
+G AC C FR
Sbjct: 2 SSGSSGVACEICGKIFRDVY 21
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 7e-06
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + TGEKPY C C +F S LH H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKS--QLHVH 31
Score = 33.3 bits (77), Expect = 0.004
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGE P
Sbjct: 31 HQRIHTGENPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 7e-06
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C C AF +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHA 26
Score = 33.6 bits (78), Expect = 0.003
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R H+GEKP
Sbjct: 31 HQRVHSGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 40.6 bits (96), Expect = 7e-06
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + +GEKPY C +C AF S+ +H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 35.6 bits (83), Expect = 6e-04
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 166 HIRTHTGEKPYACG 179
H RTH G + G
Sbjct: 31 HERTHAGVSGPSSG 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 40.6 bits (96), Expect = 8e-06
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKP+ C +C +F +S
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISS 26
Score = 33.6 bits (78), Expect = 0.003
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 40.6 bits (96), Expect = 8e-06
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 166 HIRTHTGEKPYACGQC--AFRSASVAGLH 192
+ GEKPY C QC AF +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 151 YACD----YFSYNIGCMRSHIRTHTGEKPYA 177
Y CD FS G + HIR HTG P +
Sbjct: 12 YRCDQCGKAFSQK-GSLIVHIRVHTGSGPSS 41
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 40.7 bits (95), Expect = 8e-06
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 140 RTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYACGQCA 182
+ R + C C ++ + H +H+GEKPY+ G +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 8e-06
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C AF S
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNS 26
Score = 32.6 bits (75), Expect = 0.008
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTG++P
Sbjct: 31 HQRLHTGQRPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 9e-06
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TGEKPY C QC AF S H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 33.3 bits (77), Expect = 0.004
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H HTG+KP
Sbjct: 31 HQAIHTGKKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 9e-06
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TG KPY C +C AF S H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 32.5 bits (75), Expect = 0.007
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYAC 178
FS + +H HTGEKP
Sbjct: 22 FSVY-SSLTTHQVIHTGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 9e-06
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C AF S
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRS 26
Score = 32.9 bits (76), Expect = 0.005
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H + HT +KP
Sbjct: 31 HQKIHTKQKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 40.6 bits (96), Expect = 9e-06
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + +GEKP+ C +C F + S + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNS--QCYSH 31
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYAC 178
F N SH R+H+GEKP
Sbjct: 22 FYTN-SQCYSHQRSHSGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 9e-06
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TG K + C +C AF S +H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 34.0 bits (79), Expect = 0.002
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 166 HIRTHTGEKPYACGQ 180
H + HTGEKP
Sbjct: 31 HQKIHTGEKPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY+C C AF ++
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSA 26
Score = 32.1 bits (74), Expect = 0.009
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 166 HIRTHTGEKPYAC 178
H+R HT E
Sbjct: 31 HLRVHTQETLSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + +GEKPY C C AF ++
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSA 26
Score = 34.0 bits (79), Expect = 0.002
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 166 HIRTHTGEKPYACGQ 180
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGPSS 45
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKP+ C +C +F S
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNS 26
Score = 33.3 bits (77), Expect = 0.004
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGE P
Sbjct: 31 HQRIHTGENPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C FR S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNS 26
Score = 32.5 bits (75), Expect = 0.007
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + TGEKPY C C +F S LH H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKS--QLHVH 31
Score = 33.3 bits (77), Expect = 0.004
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H + HTGEKP
Sbjct: 31 HQQIHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + +GEKPY C +C ++ L +H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRL--DLDFH 31
Score = 33.3 bits (77), Expect = 0.003
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 164 RSHIRTHTGEKPYAC 178
H R HTGEK
Sbjct: 29 DFHQRVHTGEKLSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + G PY C QC +F L H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKL--RLLVH 31
Score = 36.0 bits (84), Expect = 3e-04
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 150 CYACD-YFSYNIGCMRSHIRTHTGEKPYACGQ 180
C C+ FS + H R HT EKP
Sbjct: 15 CSQCEKSFSGK-LRLLVHQRMHTREKPSGPSS 45
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + +GEKPY C +C F S+ H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 166 HIRTHTGEKPYAC 178
H RTHTGEKP
Sbjct: 31 HQRTHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C C AF +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKA 26
Score = 34.0 bits (79), Expect = 0.002
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 166 HIRTHTGEKPYAC 178
H +THTGEKP
Sbjct: 31 HQKTHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + GEK + C +C F AS LH
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 150 CYACD-YFSYNIGCMRSHIRTHTGEKPYACGQ 180
C CD FS +R H H GEKP
Sbjct: 15 CRECDMCFSQA-SSLRLHQNVHVGEKPSGPSS 45
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TG+KPY C +C AF +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNT 26
Score = 29.8 bits (68), Expect = 0.071
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYAC 178
F N +R HTGEKP
Sbjct: 22 FIQNTSLIRHWRYYHTGEKPSGP 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TGE+ Y C +C AF S +H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 33.3 bits (77), Expect = 0.003
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H R H GEKP
Sbjct: 31 HQRIHRGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + TGEKPY C +C F L+ H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRR--DLYTH 31
Score = 33.3 bits (77), Expect = 0.003
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 164 RSHIRTHTGEKPYAC 178
+H HTGEKP
Sbjct: 29 YTHHMVHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKP+ C C +F S
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRS 26
Score = 32.8 bits (76), Expect = 0.005
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 166 HIRTHTGEKPYAC 178
H HT EKP
Sbjct: 31 HSMVHTAEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGE+PY C C AF S
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRS 26
Score = 33.2 bits (77), Expect = 0.004
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H + HTGEKP
Sbjct: 31 HQKIHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY CG+C AF +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKA 26
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C C AFR +S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSS 26
Score = 32.1 bits (74), Expect = 0.010
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H H+GE+P
Sbjct: 31 HHSVHSGERPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C +F S
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKS 26
Score = 33.6 bits (78), Expect = 0.003
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HRRIHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + TGEKP+ C +C F S L+ H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRS--ALNVH 31
Score = 33.6 bits (78), Expect = 0.003
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 164 RSHIRTHTGEKPYAC 178
H + HTGEKP
Sbjct: 29 NVHHKLHTGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TGEKPY C C AF +H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 33.6 bits (78), Expect = 0.003
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R H+G+KP
Sbjct: 31 HQRIHSGKKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLH 192
S + TG KPY C QC F S +H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 34.4 bits (80), Expect = 0.002
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R+HTG KP
Sbjct: 31 HQRSHTGVKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 1e-05
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + +G+KPY C +C F
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIG 26
Score = 33.3 bits (77), Expect = 0.004
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 166 HIRTHTGEKPYACGQ 180
H R HTGE+
Sbjct: 31 HKRVHTGERSSGPSS 45
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 42.8 bits (102), Expect = 1e-05
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
FS +R+H RTHTGEKPY C +C +F LH H
Sbjct: 115 FSQL-AHLRAHQRTHTGEKPYKCPECGKSFSRED--NLHTH 152
Score = 42.4 bits (101), Expect = 2e-05
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
FS + + H RTHTGEKPY C +C +F L H
Sbjct: 31 FSRS-DHLAEHQRTHTGEKPYKCPECGKSFSDKK--DLTRH 68
Score = 42.4 bits (101), Expect = 2e-05
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 156 FSYNIGCMRSHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
FS +R+H RTHTGEKPYAC +C +F + L H
Sbjct: 87 FSQR-ANLRAHQRTHTGEKPYACPECGKSFSQLA--HLRAH 124
Score = 42.0 bits (100), Expect = 3e-05
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 164 RSHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
+H RTHTGEKPY C +C +F L+ H
Sbjct: 150 HTHQRTHTGEKPYKCPECGKSFSRRD--ALNVH 180
Score = 41.7 bits (99), Expect = 3e-05
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 164 RSHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
+ GEKPYAC +C +F + L H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSD--HLAEH 40
Score = 28.2 bits (64), Expect = 1.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 164 RSHIRTHTGEKP 175
H RTHTG+K
Sbjct: 178 NVHQRTHTGKKT 189
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C FR S
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNS 26
Score = 32.1 bits (74), Expect = 0.009
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H HTGEKP
Sbjct: 31 HQLIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 1e-05
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKP+ C +C AF + S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKS 26
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 166 HIRTHTGEKPYAC 178
H RTHTGEKP
Sbjct: 31 HQRTHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 2e-05
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + GE+ + C C F AS
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQAS 26
Score = 33.3 bits (77), Expect = 0.004
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HRRIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TG+KP+ C C +FR+
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKG 26
Score = 32.9 bits (76), Expect = 0.005
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEK
Sbjct: 31 HQRIHTGEKSGPS 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + +GEKP+ C +C F S LH H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNS--QLHSH 31
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 164 RSHIRTHTGEKPYACGQ 180
SH R HTGEKP
Sbjct: 29 HSHQRVHTGEKPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + + EKPY C C + L H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRL--NLDMH 31
Score = 32.5 bits (75), Expect = 0.007
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 166 HIRTHTGEKPYAC 178
H R H GEK
Sbjct: 31 HQRVHMGEKTSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + +GEKPY C +C AF +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHT 26
Score = 33.6 bits (78), Expect = 0.003
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 166 HIRTHTGEKPYACGQ 180
H R HTG +P
Sbjct: 31 HRRIHTGYRPSGPSS 45
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C + S
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKF 26
Score = 33.3 bits (77), Expect = 0.004
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H + HTGE+P
Sbjct: 31 HQKVHTGERPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + TGEKPY C C +F S L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKS--RLRIH 31
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 150 CYACD-YFSYNIGCMRSHIRTHTGEKPYAC 178
C C F++ +R H + HTGE+
Sbjct: 15 CSDCGKSFTWK-SRLRIHQKCHTGERHSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + +GEKP+ C +C AFR
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNI 26
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 166 HIRTHTGEKPYAC 178
H+R HTGEKP
Sbjct: 31 HLRIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TG KPY C +C AF S
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTS 26
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRVHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 39.4 bits (93), Expect = 2e-05
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
+ GEKPY C C FR
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQ 25
Score = 38.2 bits (90), Expect = 5e-05
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 151 YACDY----FSYNIGCMRSHIRTHTGEKPYA 177
Y C+ F + ++SH+R HTG P +
Sbjct: 12 YPCEICGTRFRHL-QTLKSHLRIHTGSGPSS 41
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + GEKPY C +C +F +
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSY 26
Score = 33.7 bits (78), Expect = 0.003
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H THT EKP
Sbjct: 31 HWITHTREKPSGP 43
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 40.2 bits (95), Expect = 2e-05
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 164 RSHIRTHTGEKPYACGQC 181
+ H++ H+ + Y C
Sbjct: 57 KEHMKLHSDTRDYICEFS 74
Score = 32.1 bits (74), Expect = 0.018
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 11/39 (28%)
Query: 164 RSHIR-THTGEKPYACGQC----AFRSASVAGLHYHLKK 197
H + H +K ++C + +F HLK+
Sbjct: 26 NHHKKYQHIHQKSFSCPEPACGKSFNFKK------HLKE 58
Score = 29.1 bits (66), Expect = 0.21
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 170 HTGEKPYAC--GQC--AFRSASVAGLHYHLKKT 198
+G C C F + L++H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQ--YLNHHKKYQ 32
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C AF +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTT 26
Score = 32.9 bits (76), Expect = 0.006
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRVHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGE+ Y C +C AF S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKS 26
Score = 33.2 bits (77), Expect = 0.003
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TG+KPY C +C F S
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNS 26
Score = 32.1 bits (74), Expect = 0.010
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H HTGEKP
Sbjct: 31 HRGIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C F S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNS 26
Score = 32.5 bits (75), Expect = 0.007
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H HTGEKP
Sbjct: 31 HRGIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKP+ CG+C ++
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRV 26
Score = 32.5 bits (75), Expect = 0.006
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRVHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C AF S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTS 26
Score = 32.9 bits (76), Expect = 0.006
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 3e-05
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKP C +C AF S
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKS 26
Score = 34.1 bits (79), Expect = 0.002
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 166 HIRTHTGEKPYAC 178
H RTH +K
Sbjct: 31 HQRTHVDDKHSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 3e-05
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + + K + C +C F S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKS 26
Score = 31.4 bits (72), Expect = 0.017
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + +GE+PY C +C F S
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHS 26
Score = 33.3 bits (77), Expect = 0.003
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 166 HIRTHTGEKPYAC 178
H++ H EK
Sbjct: 31 HLKRHFREKSSGP 43
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
H RTHT E+PY C C AFR
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQD 59
Score = 39.3 bits (93), Expect = 9e-05
Identities = 4/24 (16%), Positives = 7/24 (29%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
+K + C C F +
Sbjct: 8 GRLPSKTKKEFICKFCGRHFTKSY 31
Score = 39.0 bits (92), Expect = 1e-04
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 164 RSHIRTHTGEKPYACGQC--AFRSAS 187
R H H+ EKP+ C +C F +
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSR 87
Score = 32.8 bits (76), Expect = 0.019
Identities = 2/13 (15%), Positives = 2/13 (15%)
Query: 166 HIRTHTGEKPYAC 178
H H
Sbjct: 92 HKTLHMQTSSPTA 104
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 40.1 bits (95), Expect = 3e-05
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
H RTHTGEKPY C +C AF S L H
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRS--HLIGH 65
Score = 39.0 bits (92), Expect = 6e-05
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
+ Y C +C +F +S
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSS 32
Score = 30.5 bits (70), Expect = 0.071
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 165 SHIRTHTGEKPY 176
H R HTG P
Sbjct: 64 GHHRVHTGSGPS 75
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGE PY C +C AF
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKY 26
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 165 SHIRTHTGEKPYAC 178
SH RTH GEKP
Sbjct: 30 SHQRTHAGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.0 bits (92), Expect = 3e-05
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 166 HIRTHTGEKPYACGQC--AFRSASVAGLHYHLKK 197
+ GEKPY C C F + HL+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVA------HLRA 29
Score = 34.4 bits (80), Expect = 0.001
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 163 MRSHIRTHTGEKPYA 177
+R+H+ HTG P +
Sbjct: 27 LRAHVLIHTGSGPSS 41
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C F S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNS 26
Score = 32.5 bits (75), Expect = 0.007
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H HTGEKP
Sbjct: 31 HRGIHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.1 bits (92), Expect = 3e-05
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + T K Y C +C AF
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIF 26
Score = 26.0 bits (58), Expect = 1.6
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 166 HIRTHTGEKPYACG 179
H + HT + + G
Sbjct: 31 HQKIHTRKSGPSSG 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.0 bits (92), Expect = 3e-05
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGE PY C +C F
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKD 26
Score = 35.2 bits (82), Expect = 8e-04
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 166 HIRTHTGEKPYACG 179
H +TH+G+ + G
Sbjct: 31 HQKTHSGQSGPSSG 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGE P+ C +C F +
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKT 26
Score = 33.2 bits (77), Expect = 0.004
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H + HTGE+P
Sbjct: 31 HQKIHTGERPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + G+K + C +C F +S
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSS 26
Score = 32.9 bits (76), Expect = 0.006
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + +GEKPY C +C F S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNS 26
Score = 32.5 bits (75), Expect = 0.007
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HWRIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-05
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGE+P+ C +C +F ++
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSA 26
Score = 32.5 bits (75), Expect = 0.007
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H R HTGEKP
Sbjct: 31 HQRIHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 4e-05
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C F S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNS 26
Score = 32.9 bits (76), Expect = 0.006
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H R HTG KP
Sbjct: 31 HRRVHTGGKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 4e-05
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
S + +GEKP+ C +C F S LH H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNS--HLHSH 31
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 163 MRSHIRTHTGEKPYAC 178
+ SH R HTGEKP
Sbjct: 28 LHSHQRVHTGEKPSGP 43
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 40.6 bits (96), Expect = 4e-05
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 148 FVCYACD-YFSYNIGCMRSHIRTHTGEKPYACGQC--AFRSASVAGLHYHLKKT 198
F C C F +R H+ +HTGE PY C C F L H+ K
Sbjct: 67 FTCSVCQETFRRR-MELRLHMVSHTGEMPYKCSSCSQQFMQKK--DLQSHMIKL 117
Score = 39.8 bits (94), Expect = 7e-05
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 164 RSHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
+ H R HTGEKP+ C +C + L H
Sbjct: 24 KVHNRKHTGEKPFECPKCGKCYFRKE--NLLEH 54
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 148 FVCYACD-YFSYNIGCMRSHIR---THTGEKPYACGQC--AFRSASVAGLH 192
F C C + + H + E+ + C C FR LH
Sbjct: 36 FECPKCGKCYFRK-ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 33.6 bits (78), Expect = 0.011
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 170 HTGEKPYACGQC--AFRSASVAGLH 192
+G C C F S +H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH 26
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 38.7 bits (91), Expect = 4e-05
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEK Y C +C F S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNS 26
Score = 32.1 bits (74), Expect = 0.009
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 166 HIRTHTGEKPYAC 178
H + HTGEKP
Sbjct: 31 HQKIHTGEKPSGP 43
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 39.4 bits (93), Expect = 4e-05
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 151 YACD----YFSYNIGCMRSHIRTHTGEKPYACGQC--AFRSAS 187
Y CD F Y G + SH HTGEKPY C C F +
Sbjct: 18 YKCDRCQASFRYK-GNLASHKTVHTGEKPYRCNICGAQFNRPA 59
Score = 39.4 bits (93), Expect = 5e-05
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 164 RSHIRTHTGEKPYACGQC--AFRSASVAGLHYH 194
H +KPY C +C +FR L H
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKG--NLASH 36
Score = 30.9 bits (71), Expect = 0.046
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 164 RSHIRTHTGEKPY 176
++H R H+GEKPY
Sbjct: 62 KTHTRIHSGEKPY 74
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 39.7 bits (94), Expect = 4e-05
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
H+ H+ +PY C C F S
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKS 43
Score = 39.3 bits (93), Expect = 6e-05
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
H HTGEKP+ C C AF +S
Sbjct: 48 HTFIHTGEKPHKCQVCGKAFSQSS 71
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 4e-05
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + TGEKPY C +C F S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNS 26
Score = 32.5 bits (75), Expect = 0.006
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H R HTG KP
Sbjct: 31 HQRIHTGVKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 5e-05
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + GEK Y C C F +S
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSS 26
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 165 SHIRTHTGEKPYAC 178
+H R HTGEKP
Sbjct: 30 THQRVHTGEKPSGP 43
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 39.2 bits (92), Expect = 6e-05
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 151 YACDYFSYNIGCMRS-----HIRTHTGEKPYACGQC 181
YAC S + RS HIR HTG+KP+ C C
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 55
Score = 25.0 bits (55), Expect = 5.8
Identities = 4/16 (25%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 165 SHIRTH--TGEKPYAC 178
+++ + +PYAC
Sbjct: 7 NNLLNYVVPKMRPYAC 22
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 6e-05
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + +GE+P+ C +C F S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRS 26
Score = 32.9 bits (76), Expect = 0.006
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H+R H+ EK
Sbjct: 31 HLRLHSREKSSGP 43
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
H+GEKPY C +C AF +S
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSS 28
Score = 38.6 bits (91), Expect = 7e-05
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 166 HIRTHTGEKPYACGQC--AFRSAS 187
H R HTGEKPY C +C AF S
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNS 56
Score = 30.5 bits (70), Expect = 0.061
Identities = 4/12 (33%), Positives = 4/12 (33%)
Query: 166 HIRTHTGEKPYA 177
H R HT
Sbjct: 61 HQRIHTSGPSSG 72
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 39.1 bits (92), Expect = 8e-05
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 13/40 (32%)
Query: 151 YACDYFSYNIGCMRS---------HIRTHTGEKPYACGQC 181
Y C + GC H R HTG KP+ CG C
Sbjct: 46 YKCTW----EGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Score = 37.6 bits (88), Expect = 3e-04
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 164 RSHIRTHTGEKPYAC 178
++H+RTHTGEKPY C
Sbjct: 34 KAHLRTHTGEKPYKC 48
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 38.7 bits (91), Expect = 1e-04
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 166 HIRTHTGEKPYACGQC 181
H R HTG +P+ C +C
Sbjct: 56 HYRKHTGHRPFQCQKC 71
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 164 RSHIRTHTGEKPYAC 178
++H+RTHTGEKPY C
Sbjct: 24 KAHLRTHTGEKPYHC 38
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 39.0 bits (92), Expect = 2e-04
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 151 YACDY------FSYNIGCMRSHIRTHTGEKPYACGQC--AFRSAS 187
AC + F N MR H+ TH G + + C +C AF +S
Sbjct: 6 IACPHKGCTKMFRDN-SAMRKHLHTH-GPRVHVCAECGKAFVESS 48
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 164 RSHIRTHTGEKPYACG--QC--AFRSASVAGLHYH 194
R+H+R HTG++PY C C F ++ L H
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQST--NLKSH 113
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 164 RSHIRTHTGEKPYAC--GQC--AFRSASVAGLHYH 194
+ H HTGEKP+ C C F L H
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDF--NLRTH 83
Score = 34.4 bits (80), Expect = 0.006
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 164 RSHIRTHTGEKPY 176
+SHI TH K
Sbjct: 111 KSHILTHAKAKNN 123
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.7 bits (86), Expect = 2e-04
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 165 SHIRTHTGEKPYACG 179
SH RTH GE + G
Sbjct: 28 SHQRTHAGESGPSSG 42
Score = 36.3 bits (85), Expect = 3e-04
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 168 RTHTGEKPYACGQC--AFRSAS 187
+GE PY C +C AF
Sbjct: 3 SGSSGENPYECSECGKAFNRKD 24
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 37.8 bits (88), Expect = 2e-04
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 7/55 (12%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHT---GEKPYACGQC--AFRSASVAGLHYHLKK 197
C C + + H R H + C C F + H K
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPD--SVAAHRSK 60
Score = 35.1 bits (81), Expect = 0.002
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 170 HTGEKPYACGQCAFRSASVAGLHYHLKK 197
+G C C F A L++H +K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK 29
Score = 25.1 bits (55), Expect = 5.9
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 148 FVCYACDY-FSYNIGCMRSHIRTHTGEKPYACGQCA 182
F C C F + +H A + +
Sbjct: 39 FPCEFCGKRFEKP-DSVAAHRSKSHPALLLAPQESS 73
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 36.5 bits (85), Expect = 2e-04
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 166 HIRTHTGEKPYACGQC--AFRSASVAGLH 192
+ GE PY CGQC +F +H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 30.3 bits (69), Expect = 0.043
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 148 FVCYACD-YFSYNIGCMRSHIRTHTGEKPYA 177
++C C F+ G + H R+ + P +
Sbjct: 12 YLCGQCGKSFTQR-GSLAVHQRSCSQSGPSS 41
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 36.8 bits (86), Expect = 3e-04
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSASVAGLHYHLKKT 198
S + + KPY C C F L+ H+K+
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPD--HLNGHIKQV 35
Score = 36.0 bits (84), Expect = 5e-04
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 163 MRSHI-RTHTGEKPYACGQC--AFRSA 186
+ HI + HT E+P+ C S
Sbjct: 28 LNGHIKQVHTSERPHKCQVWVSGPSSG 54
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 37.1 bits (87), Expect = 3e-04
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 168 RTHTGEKPYACGQC--AFRSASVAGLHYHLKKTYH 200
T GE Y C C + S H ++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHIS--NFCRHYVTSHK 35
Score = 34.5 bits (80), Expect = 0.002
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 163 MRSHIRT--HTGEKPYACGQC--AF-RSASVAGLHYHLK 196
H T K Y C C F R + + H+K
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDN---MTAHVK 61
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.5 bits (85), Expect = 3e-04
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 165 SHIRTHTGEKPYAC 178
S + TGEKP+AC
Sbjct: 2 SSGSSGTGEKPFAC 15
Score = 33.8 bits (78), Expect = 0.002
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 13/37 (35%)
Query: 151 YACDYFSYNIGCMRS---------HIRTHTGEKPYAC 178
+AC + GC H R+H+G KP
Sbjct: 13 FACTW----PGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 37.0 bits (86), Expect = 3e-04
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 164 RSHIRTHTGEKPYAC 178
++H RTHTGEKP++C
Sbjct: 36 KAHTRTHTGEKPFSC 50
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 38.7 bits (91), Expect = 3e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 148 FVCYACDY------FSYNIGCMRSHIRTHTGEKPYAC 178
FVC+ F + H+R HTGEKP+ C
Sbjct: 35 FVCHWGGCSRELRPFK-AQYMLVVHMRRHTGEKPHKC 70
Score = 37.6 bits (88), Expect = 7e-04
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 10/38 (26%)
Query: 164 RSHIRTHTGEKPYACGQ--C--AFRSASVAGLHYHLKK 197
++H+R+HTGEKPY C C AF +AS K
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNAS------DRAK 117
Score = 33.7 bits (78), Expect = 0.017
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 166 HIRTHTGEKPYAC--GQC 181
RTH+ EKPY C C
Sbjct: 119 QNRTHSNEKPYVCKLPGC 136
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 38.4 bits (90), Expect = 3e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 14/45 (31%)
Query: 151 YACDYFSYNIGCMR------------SHIRTHTGEKPYAC--GQC 181
++ Y C R +HIR HTGEKP+ C C
Sbjct: 54 EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGC 98
Score = 37.7 bits (88), Expect = 7e-04
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 166 HIRTHTGEKPYACG--QC--AFRSASVAGLHYHLKK 197
H RTHTGEKP+ C C F ++S KK
Sbjct: 111 HKRTHTGEKPFKCEFEGCDRRFANSS------DRKK 140
Score = 35.7 bits (83), Expect = 0.003
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 166 HIRTHTGEKPYAC 178
H+ HT +K
Sbjct: 141 HMHVHTSDKSGPS 153
Score = 33.0 bits (76), Expect = 0.024
Identities = 3/25 (12%), Positives = 5/25 (20%), Gaps = 2/25 (8%)
Query: 165 SHIRTHTGEKPYACGQC--AFRSAS 187
S + C F +
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMH 39
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 37.8 bits (87), Expect = 4e-04
Identities = 20/91 (21%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 111 SPF-CIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRT 169
S F C C A T L EL H D + +
Sbjct: 18 SKFRCKDCSAAYDT-LVELTVHMNETGH--YRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 170 HTGEKPYACGQCAFRSASVAGLHYHLKKTYH 200
+K C C S+ L H+ KT H
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 35.5 bits (81), Expect = 0.003
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 163 MRSHIRTHTGEKPYACGQC--AFRSASVAGLHYHLKKTYH 200
+ + TG + C C A+ + L H+ +T H
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLV--ELTVHMNETGH 44
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 36.0 bits (84), Expect = 4e-04
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 168 RTHTGEKPYACGQC--AFRSASVAGLH 192
+G++ Y C +C +FR LH
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 31.0 bits (71), Expect = 0.021
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 166 HIRTHTGEKPYA 177
H R HTG P +
Sbjct: 29 HERIHTGSGPSS 40
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.0 bits (81), Expect = 8e-04
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 168 RTHTGEKPYACGQC 181
+GEKPY+C +C
Sbjct: 3 SGSSGEKPYSCAEC 16
Score = 28.4 bits (64), Expect = 0.19
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 148 FVCYACD-YFSYNIGCMRSHIRTHTGEKPYACG 179
+ C C FS N ++ H + HT + + G
Sbjct: 11 YSCAECKETFSDNNRLVQ-HQKMHTVKSGPSSG 42
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 36.1 bits (83), Expect = 0.001
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 23/77 (29%)
Query: 114 CIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMR--------- 164
C ST ++EL+ H + C + C R
Sbjct: 28 KKSCDRTFST-MHELVTHVTM----EHVGGPEQN--NHVCYWE----ECPREGKSFKAKY 76
Query: 165 ---SHIRTHTGEKPYAC 178
+HIR HTGEK
Sbjct: 77 KLVNHIRVHTGEKSGPS 93
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 37.6 bits (88), Expect = 0.001
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 147 KFVCYACDY------FSYNIGCMRSHIRTHTGEKPYACGQC----AFRSAS 187
K Y C + F + ++ H +HT + PY C F S
Sbjct: 101 KICVYVCHFENCGKAFKKH-NQLKVHQFSHTQQLPYECPHEGCDKRFSLPS 150
Score = 36.8 bits (86), Expect = 0.002
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 166 HIRTHTGEKPYACGQC----AFRSAS 187
H THTGEK + C F + +
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKA 88
Score = 36.8 bits (86), Expect = 0.002
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 151 YACDY------FSYNIGCMRSHIRTHTGEKPYACGQC----AFRSAS 187
Y C + ++ N +++H+ HTGEKP+ C + F S
Sbjct: 13 YICSFADCGAAYNKN-WKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH 58
Score = 36.0 bits (84), Expect = 0.003
Identities = 5/26 (19%), Positives = 6/26 (23%), Gaps = 4/26 (15%)
Query: 166 HIRTHTGEKPYAC--GQC--AFRSAS 187
K Y C C A+
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNW 28
Score = 33.3 bits (77), Expect = 0.027
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 164 RSHIRTHTG---EKPYACGQC 181
+ H + H G +K +C
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFV 173
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 166 HIRTHTGEKPYAC 178
H +TH EKP
Sbjct: 29 HQQTHAEEKPSGP 41
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 168 RTHTGEKPYACGQC--AFRSAS 187
+GEKP+ C C AF S S
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKS 24
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 35.7 bits (83), Expect = 0.001
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 164 RSHIRTHTGEKPYACGQ 180
+ H +HT + PY C
Sbjct: 20 KVHQFSHTQQLPYECPH 36
Score = 33.4 bits (77), Expect = 0.008
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 166 HIRTHTGEKPYACGQCAFRSASVAGLHYHLKKT 198
H + H G C+F + H+ +
Sbjct: 52 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 84
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.2 bits (79), Expect = 0.002
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 166 HIRTHTGEKPYACGQC 181
R TG KP+ C C
Sbjct: 2 STRGSTGIKPFQCPDC 17
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 32.1 bits (73), Expect = 0.008
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 165 SHIRTHTGEKPYACGQC 181
S + GE P+ C +C
Sbjct: 2 SSGSSGAGENPFKCSKC 18
Score = 26.4 bits (58), Expect = 1.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 148 FVCYACD-YFSYNIGCMRSHIRTHTGEKPYACG 179
F C CD F+ + H RTH + + G
Sbjct: 13 FKCSKCDRVFTQR-NYLVQHERTHARKSGPSSG 44
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.5 bits (73), Expect = 0.022
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 145 RHKFVCYACDYFSY-NIGCMRSHIRTHTGEKPYACGQCAFRSASVAGLHYHLKKTY 199
+ C C I ++ H+ ++ + C C + S+AG+ YH+ +
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH 86
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 31.9 bits (72), Expect = 0.023
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 161 GCMRSHIRTHTGEKPYACGQC--AFRSAS 187
G + H G++ C +C F S
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRS 32
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.031
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTGEK 174
+ C C Y S + H+R HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.0 bits (64), Expect = 0.12
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 171 TGEKPYACGQCAFRSASVAGLHYHLKK 197
+ KPY C QC++ SA A L+ HL+K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRK 31
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 30.9 bits (69), Expect = 0.033
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 173 EKPYACGQCAFRSASVAGLHYHLKKTYH 200
+KPYAC C R + GL YH ++
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHL 32
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 31.8 bits (71), Expect = 0.040
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 114 CIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGE 173
C C A LS+ L E H R C R+ VC C ++ + H +
Sbjct: 19 CRLCNAKLSSLL-EQGSHERLC---------RNAAVCPYCSLRFFSPELKQEH-ESKCEY 67
Query: 174 KPYACGQCAFRSASVAGLHYHLKK 197
K C +C S + H +
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVE 91
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.5 bits (70), Expect = 0.051
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 145 RHKFVCYACDYFSYN-IGCMRSHIRT-HTGEKPYACGQCAFRSASVAGLHYHLKKTY 199
R + VC C+ + + ++ H+ + C C + S AGL+YH +
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 26.4 bits (57), Expect = 3.2
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 114 CIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGE 173
C C V L L +H C+ + C C + + H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQ------DALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 174 KP 175
KP
Sbjct: 81 KP 82
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.3 bits (70), Expect = 0.058
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 147 KFVCYACDYFSYNIGCMRSHIRT-HTG---EKPYACGQCAFRSASVAGLHYHLKK 197
+ C C + + ++ H+ + H Y C +C F + L H K
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK 72
Score = 30.1 bits (67), Expect = 0.15
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 114 CIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHI-RTHTG 172
C YC + +LN H + + + +VC C++ + + H + H G
Sbjct: 21 CKYC-TFQTPDLNMFTFHVDSEHPNVVLNS---SYVCVECNFLTKRYDALSEHNLKYHPG 76
Query: 173 EKPYAC 178
E+ +
Sbjct: 77 EENFKL 82
Score = 28.2 bits (62), Expect = 0.82
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 164 RSHIRTHTGEKPYACGQCAFRSASVAGLHYHLKK 197
+ + E Y C C F++ + +H+
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDS 40
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.17
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 12/56 (21%)
Query: 101 MIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRTCKS---MIRTDPFRHKFVCYAC 153
M R + + NLN ++ C CK I VC C
Sbjct: 2 MTRESIDKRAGRR--------GPNLNIVL-TCPECKVYPPKIVERFSEGDVVCALC 48
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 27.4 bits (60), Expect = 0.41
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTGEK 174
+VC C + G ++ H+R HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 0.87
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 170 HTGEKPYACGQCAFRSASVAGLHYHLK 196
+GEKPY+C C R + YH++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVR 31
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 26.0 bits (58), Expect = 1.0
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 13/33 (39%)
Query: 151 YACDYFSYNIGC----MRS-----HIRTHTGEK 174
+ C + C RS H RTHTGEK
Sbjct: 3 FMCTW----SYCGKRFTRSDELQRHKRTHTGEK 31
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.0 bits (56), Expect = 1.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 174 KPYACGQCAFRSASVAGLHYHLKKTY 199
K Y C C FRSA + L H+K +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 27.6 bits (62), Expect = 1.3
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 89 LDLLDHCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRT 134
L L H K ++ I P ++ + F + ++L +L++ +
Sbjct: 45 LTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQL 90
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 25.8 bits (57), Expect = 1.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 164 RSHIRTHTGEK 174
R+H+R HTGE+
Sbjct: 27 RAHLRWHTGER 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.5
Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 73/198 (36%)
Query: 8 TLAKVFLVILEPTLERNRTNITSDVYIAVLVFSNLTFF-----ITAQLVLMSLDQILNLN 62
T+ + L +LEP R F L+ F I L
Sbjct: 357 TIIESSLNVLEPAEYRKM-------------FDRLSVFPPSAHIPTIL------------ 391
Query: 63 LSVLLVTTIPTQNHSLCKHCHSQLSHLDLLDHCKTCSYMIRPNANNTFSPFCIYCKAVLS 122
LS++ I + + H L++ + +T S IY + +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYS----LVE---------KQPKESTISIPSIYLE-LKV 437
Query: 123 TNLNELIEHCRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYACGQCA 182
NE H +S++ + D + + +H G
Sbjct: 438 KLENEYALH----RSIVDHYNIP---KTFDSDDLIPP--YLDQYFYSHIG---------- 478
Query: 183 FRSASVAGLHYHLKKTYH 200
+HLK H
Sbjct: 479 ----------HHLKNIEH 486
>1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET:
NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1
Length = 269
Score = 27.7 bits (62), Expect = 2.3
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 57 QILNLNLSVLLVTTIPTQNHSLCKHCHSQLSHL--------------DLLDHCKTCS--Y 100
++ ++ S L+ +I + + + + D+L + S Y
Sbjct: 4 ELCDVTSSTGLLDSIKVMASHVKEQLKDKGTSEVAQPIVSPDPTDCADILLNGYRSSGGY 63
Query: 101 MIRPNANNTFSPFCIYC 117
I P + T +YC
Sbjct: 64 RIWPKSWMTVGTLNVYC 80
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 27.5 bits (61), Expect = 3.5
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 10/47 (21%)
Query: 132 CRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYAC 178
C C + D ++K+VC YA
Sbjct: 1064 CDQCGYIGWYDKNKNKYVCPIH----------GDKSNLFPVTVSYAF 1100
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 24.7 bits (53), Expect = 4.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 170 HTGEKPYACGQCAFRSASVAGLHYHLK 196
+G++P+ C C + A HLK
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 26.2 bits (58), Expect = 4.4
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 89 LDLLDHCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRT 134
L + K + I P ++ + T+L +L+E +
Sbjct: 66 LSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQL 111
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.5 bits (52), Expect = 4.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 174 KPYACGQCAFRSASVAGLHYHLKK 197
KP+ C C + + S + L H+ +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNR 31
Score = 24.5 bits (52), Expect = 4.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTGEK 174
F C C+Y + + +++H+ H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 25.3 bits (55), Expect = 4.8
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 78 LCKHCHSQLSHLDLLDHCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRTC 135
+C+HC +LS L L +H C C C + + +L H C
Sbjct: 19 VCQHCDLELSILKLKEHEDYCGARTEL---------CGNCGRNVL--VKDLKTHPEVC 65
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388,
selenomethionine SAD, unknown F; 2.00A {Staphylococcus
aureus subsp} PDB: 3lnl_A*
Length = 370
Score = 26.9 bits (59), Expect = 4.8
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 112 PFCIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRH 146
K +L N + S I TDPF++
Sbjct: 335 VMKEGLKTLLMNWFNIEKINIDVEASTINTDPFQY 369
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 23.8 bits (52), Expect = 5.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 166 HIRTHTGEK 174
H R+HT EK
Sbjct: 21 HYRSHTNEK 29
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 26.8 bits (59), Expect = 5.7
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 10/47 (21%)
Query: 132 CRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYAC 178
C C + + + C +C S + PYA
Sbjct: 1152 CDICGLIAIASYKKDSYECRSCQN-RTRF----SQVYL-----PYAA 1188
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 26.0 bits (56), Expect = 6.1
Identities = 11/85 (12%), Positives = 19/85 (22%)
Query: 95 CKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRHKFVCYACD 154
T + T+ C KA +++ CK R C
Sbjct: 35 NITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGKCKKTCRDVFCPGSSTCVVDQ 94
Query: 155 YFSYNIGCMRSHIRTHTGEKPYACG 179
+ + + CG
Sbjct: 95 TNNAYCVTCNRICPEPSSSEQSLCG 119
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.4 bits (53), Expect = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 157 SYNIGCMRSHIRTHTGEK 174
YNI RSHI+TH ++
Sbjct: 33 RYNI---RSHIQTHLEDR 47
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 25.7 bits (55), Expect = 7.0
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 137 SMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYACGQCAFRSASVAGLHYHLK 196
+ +FVC C + ++ HIR E C C S H+
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVC 121
Query: 197 KT 198
K
Sbjct: 122 KK 123
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 23.6 bits (50), Expect = 7.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 173 EKPYACGQCAFRSASVAGLHYHLK 196
EKP++C C RS + + HL+
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLR 24
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 26.2 bits (55), Expect = 8.3
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 3/114 (2%)
Query: 68 VTTIPTQNHSLCKHCHSQLSHLDLLDHCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNE 127
VT + C CH+ + +C C + P F + A S +
Sbjct: 127 VTMAQMEKGKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVA-DAAFSHEFHL 185
Query: 128 LIEHCRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYACGQC 181
+ C C + + ++ + C H CG+C
Sbjct: 186 GMYKCNECHT--KLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKC 237
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 24.5 bits (53), Expect = 8.8
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 79 CKHCHSQLSHLDLLDHCKTC 98
C +C + + H C
Sbjct: 13 CTYCTKEFVFDTIQSHQYQC 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.137 0.437
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,904,949
Number of extensions: 159093
Number of successful extensions: 1020
Number of sequences better than 10.0: 1
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 411
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.2 bits)