RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7453
(200 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 37.7 bits (88), Expect = 3e-05
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 168 RTHTGEKPYACGQCAFRSASVAGLHYHLKKT 198
RTH+GEKPY C C R + H+ +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 37.1 bits (86), Expect = 4e-05
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 166 HIRTHTGEKPYACGQCAFRSASVAGLHYHLK 196
+ Y C +C + + L H +
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 25.9 bits (57), Expect = 0.59
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTGE 173
+ C C + + H RTHTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.2 bits (84), Expect = 1e-04
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 168 RTHTGEKPYACGQCAFRSASVAGLHYHLKK 197
RTHTGEKPYAC C L H K+
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR 30
Score = 23.1 bits (50), Expect = 5.2
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTGEK 174
+ C CD + H + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 36.2 bits (84), Expect = 1e-04
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 166 HIRTHTGEKPYACGQCAFRSASVAGLHYHLKK 197
R TG KP+ C C + L H K+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 33.8 bits (78), Expect = 8e-04
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 148 FVCYACDY-FSYNIGCMRSHIRTHTGEKPYAC 178
++C +C FS + HT E+P+ C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 28.0 bits (63), Expect = 0.091
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 171 TGEKPYACGQCAFRSASVAGLHYHLKKT 198
+ KPY C C + L+ H+K+
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQV 28
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.2 bits (76), Expect = 0.001
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 148 FVC--YACDYFSYNIGCMRSHIRTHTGEKPYAC 178
F C AC ++ H++ H+ + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 33.0 bits (76), Expect = 0.001
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 170 HTGEKPYACGQCAFRSASVAGLHYHLK 196
H+GEKPY C +C + + L H +
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
Score = 26.0 bits (58), Expect = 0.36
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTGE 173
+ C C + H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 30.1 bits (68), Expect = 0.017
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 170 HTGEKPYACGQCAFRSASVAGLHYHLK 196
+G++P+ C C + A HLK
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 29.6 bits (67), Expect = 0.023
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTGEK 174
F C C + HI+TH +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 23.1 bits (50), Expect = 4.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 174 KPYACGQCAFRSASVAGLHYHLK 196
K +AC +C R L H+K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 29.9 bits (67), Expect = 0.026
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 146 HKFVCYACDYFSYNIGCMRSHIRTHTGEK 174
+ + C +RSHI+TH ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.2 bits (60), Expect = 0.19
Identities = 4/38 (10%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 161 GCMRSHIRTHTGEKPYACGQCA--FRSASVAGLHYHLK 196
G + +++ +K + C + H++
Sbjct: 5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 27.2 bits (61), Expect = 0.14
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 148 FVCYACDY-FSYNIGCMRSHIRTHTGEK 174
FVC C F+ ++ H R+HT EK
Sbjct: 3 FVCEVCTRAFARQ-EHLKRHYRSHTNEK 29
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 27.0 bits (59), Expect = 0.20
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 174 KPYACGQCAFRSASVAGLHYHLK 196
K Y C C FRSA + L H+K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 25.4 bits (56), Expect = 0.61
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 151 YACDY------FSYNIGCMRSHIRTHTGEK 174
+ C + F+ + ++ H RTHTGEK
Sbjct: 3 FMCTWSYCGKRFTRS-DELQRHKRTHTGEK 31
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (53), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTGE 173
F C C Y S N + H+R+HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 23.5 bits (50), Expect = 3.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 173 EKPYACGQCAFRSASVAGLHYHLKK 197
E+P+ C C + S + + L HL+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRS 25
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 27.4 bits (60), Expect = 1.2
Identities = 13/125 (10%), Positives = 30/125 (24%), Gaps = 19/125 (15%)
Query: 79 CKHCHSQLSHLDLLDH---CKTCSYMIRPNA---------NNTFSPFCIYCKAVLSTNLN 126
C C L +L + C C + +R A + +
Sbjct: 5 CDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFR 64
Query: 127 ELIEHCRTCKSMIRTDPFRHKFVCYACD-------YFSYNIGCMRSHIRTHTGEKPYACG 179
+ ++ S + + V ++ M + + G +
Sbjct: 65 DSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAV 124
Query: 180 QCAFR 184
+ A
Sbjct: 125 EQALE 129
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 24.7 bits (54), Expect = 1.4
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 163 MRSHIRTHTGE 173
+ H+R HTGE
Sbjct: 23 LVVHMRRHTGE 33
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 24.4 bits (53), Expect = 1.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 147 KFVCYACDYFSYNIGCMRSHIRTHTGEK 174
K++C C + ++ HIRTHT +
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10,
GRB10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 26.1 bits (57), Expect = 1.4
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 89 LDLLDHCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRTCKSMIRT 141
L L H K ++ I P ++ + F + ++L +L++ + K ++
Sbjct: 45 LTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPC 97
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 190
Score = 26.5 bits (58), Expect = 2.0
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 79 CKH----CHSQLSHLDLLDHCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRT 134
CK+ C L H + +H + C + RP +S C +L+ ++ H
Sbjct: 6 CKYASSGCEITLPHTEKAEHEELCEF--RP-----YSCPCPGASCKWQGSLDAVMPHLMH 58
Query: 135 C-KSMIRTDPFRHKFVC 150
KS+ F+
Sbjct: 59 QHKSITTLQGEDIVFLA 75
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.8 bits (56), Expect = 2.4
Identities = 13/58 (22%), Positives = 16/58 (27%), Gaps = 12/58 (20%)
Query: 79 CKHCHSQLSHLDLL-DHCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRTC 135
C C QL L C+ C C C S N + C+ C
Sbjct: 51 CILCGEQLGMLGSASVVCEDCKKN-----------VCTKCGVETSNNRPHPVWLCKIC 97
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG
{Escherichia coli [TaxId: 562]}
Length = 65
Score = 24.5 bits (53), Expect = 2.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 95 CKTCSYMIRPNANNTFSPFC 114
C TC + + F PFC
Sbjct: 9 CPTCGKTVVWGEISPFRPFC 28
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.3 bits (51), Expect = 3.2
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 173 EKPYACGQC--AFRSAS 187
+KP+ C C F +
Sbjct: 1 QKPFQCRICMRNFSRSD 17
Score = 22.2 bits (48), Expect = 9.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 148 FVCYACDYFSYNIGCMRSHIRTHTG 172
F C C + +HIRTHTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 26.1 bits (56), Expect = 3.3
Identities = 6/69 (8%), Positives = 13/69 (18%)
Query: 94 HCKTCSYMIRPNANNTFSPFCIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRHKFVCYAC 153
+ + + + N +I + K
Sbjct: 71 GQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGA 130
Query: 154 DYFSYNIGC 162
D N+ C
Sbjct: 131 DALELNLSC 139
>d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 220
Score = 25.6 bits (55), Expect = 3.7
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 100 YMIRPNANNTFSPFCIYC 117
Y I P + T +YC
Sbjct: 19 YRIWPKSWMTVGTLNVYC 36
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 25.8 bits (56), Expect = 4.8
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 132 CRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYACGQC 181
C CK+ Y ++S ++ R+ + + ++ C C
Sbjct: 109 CWNCKT---PKMME-WVSQYGDKFWSMDVNEFRAKDKINAHDETIGCANC 154
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 22.7 bits (48), Expect = 6.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 145 RHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYA 177
R + C C ++ + H +H+GEKPY+
Sbjct: 3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 22.3 bits (48), Expect = 8.1
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 166 HIRTHTGE 173
H+R+HTGE
Sbjct: 23 HLRSHTGE 30
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 265
Score = 24.6 bits (53), Expect = 8.6
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 112 PFCIYCKAVLSTNLNELIEHCRTCKSMIRTDPFRH 146
F A+LS + S T+PF H
Sbjct: 230 IFVEKIAALLSQWKEDKGWSIDILPSQASTNPFHH 264
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
N-terminal domain {Pelobacter acidigallici [TaxId:
35816]}
Length = 195
Score = 24.6 bits (52), Expect = 9.4
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 131 HCRTCKSMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYACGQCA 182
+ K ++ T P+ V Y + + C +CA
Sbjct: 98 KAKGKKELLDTCPYG---VMYWNEEENVAQKCTMCAHLLDDESWAPKMPRCA 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.137 0.437
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 725,357
Number of extensions: 32486
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 69
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.8 bits)