BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7454
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
+C ++ N+ RH+ +H G+KPF C +C F D+ T HI HTG+KP+ C
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
C K + K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 38 EKPFTC--NMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C C+ + D+ L HI IHTGQKP+ CR C + L H +
Sbjct: 2 ERPYACPVESCDRRFSDSSNL-TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQK 68
+ C C + ++ H+ H GEKPF C++C +F D R H IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER---KRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
+C +G++ RH+ +H G+KPF C +C F D+ T HI HTG+KP+ C
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
C K + K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 38 EKPFTC--NMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C C+ + + +L HI IHTGQKP+ CR C + L H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSL-TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQK 68
+ C C + ++ H+ H GEKPF C++C +F D R H IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER---KRHTKIHLRQK 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 28 IKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKV 87
+K H+ H G KP+ C C++ D+ +L H + IH+ ++P+ C+ C Y +R + L V
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTV 82
Query: 88 HTKRY 92
H + +
Sbjct: 83 HLRSH 87
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ 67
Y C C + ++ ++ +HL +H E+PF C +C + R++ L H+ HTG
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV-HLRSHTGD 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 33 GMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
G P C +C KC + H+ HTG KPY C+ CDY A ++ +L H +
Sbjct: 1 GSSGSSGPHKCEVCG-KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
+C + ++ RH+ +H G+KPF C +C F D+ T HI HTG+KP+ C
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
C K + K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 38 EKPFTCNMCEFKCRDNRTLK-AHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C + R +R+ HI IHTGQKP+ CR C + L H +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQK 68
+ C C + ++ H+ H GEKPF C++C +F D R H IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER---KRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
+C + + RH+ +H G+KPF C +C F D+ T HI HTG+KP+ C
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
C K + K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 38 EKPFTCNMCEFKCRDNRTLK-AHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C + R +R+ + HI IHTGQKP+ CR C + L H +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQK 68
+ C C + ++ H+ H GEKPF C++C +F D R H IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER---KRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
+C + + RH+ +H G+KPF C +C F D+ T HI HTG+KP+ C
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
C K + K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 38 EKPFTCNMCEFKCRDNRTLK-AHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C + R +R+ + HI IHTGQKP+ CR C + L H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQK 68
+ C C + ++ H+ H GEKPF C++C +F D R H IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER---KRHTKIHLRQK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
+C + + RH+ +H G+KPF C +C F D+ T HI HTG+KP+ C
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
C K + K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 38 EKPFTCNMCEFKCRDNRTLK-AHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C + R +R+ + HI IHTGQKP+ CR C + L H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC 46
+ C C + ++ H+ H GEKPF C++C
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
+C + + RH+ +H G+KPF C +C F D+ T HI HTG+KP+ C
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 66
Query: 75 CDYKARETQALKVHTK 90
C K + K HTK
Sbjct: 67 CGRKFARSDERKRHTK 82
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 38 EKPFTCNMCEFKCRDNRTLK-AHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C + R +R+ + HI IHTGQKP+ CR C + L H +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 54
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQ 67
+ C C + ++ H+ H GEKPF C++C +F D R H IH Q
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER---KRHTKIHLRQ 87
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK 86
N+ H+ +H G+KPF C +C +L A HI HTG+KP+ C C K
Sbjct: 21 NLDTHIRIHTGQKPFQCRICMRNFSQQASLNA-HIRTHTGEKPFACDICGRK-----FAT 74
Query: 87 VHTKRYHPKMY 97
+HT+ H K++
Sbjct: 75 LHTRTRHTKIH 85
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 38 EKPFTC--NMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C C+ + L H I IHTGQKP+ CR C + +L H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
+ C C ++ H+ H GEKPF C++C K T + H IH QK
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHT-RTRHTKIHLRQK 89
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPY 70
+VC C + +KRH +H GEKPF C C + + L+ H+ IHTG +PY
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT-HVRIHTGDRPY 93
Query: 71 PCRY--CDYKARETQALKVH 88
C + C+ K ++ LK H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSH 113
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
Y C K +T+ + RH+ MHLG +P+ C +C K + L H+ IHTG KPY C
Sbjct: 11 YPCQCGKSFTHKS-QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVG-HMKIHTGIKPYEC 68
Query: 73 RYC 75
C
Sbjct: 69 NIC 71
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 25 TGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRY--CDYK-ARE 81
+ +KRH H G KPF C C+ K + LK H HTG+KP+ CR+ C K AR
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARS 109
Query: 82 TQALKVH 88
+ ++ H
Sbjct: 110 DELVRHH 116
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 23 YNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKAR 80
+ +++ H H GEKP+ C+ CE + + LK H HTG KP+ C+ C K
Sbjct: 19 FKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFS 77
Query: 81 ETQALKVHTK 90
+ LK HT+
Sbjct: 78 RSDHLKTHTR 87
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIH 64
+ C C+ + ++K H H GEKPF+C C+ K + L HH N+H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH-NMH 119
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK 86
N+ H+ +H G+KPF C +C + T HI HTG+KP+ C C K
Sbjct: 21 NLDTHIRIHTGQKPFQCRIC-MRNFSQHTGLNQHIRTHTGEKPFACDICGRK-----FAT 74
Query: 87 VHTKRYHPKMY 97
+HT+ H K++
Sbjct: 75 LHTRDRHTKIH 85
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 38 EKPFTC--NMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+P+ C C+ + L H I IHTGQKP+ CR C + L H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 16 FACKF----YTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
F C+ ++ +TG + +H+ H GEKPF C++C K T + H IH QK
Sbjct: 35 FQCRICMRNFSQHTG-LNQHIRTHTGEKPFACDICGRKFATLHT-RDRHTKIHLRQK 89
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
Y C C + ++ RH H GEKP+ C C L+AH HTG+KPY C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYAC 108
Query: 73 RYCDYKARETQALKVHTK 90
C + L+ H +
Sbjct: 109 PECGKSFSQLAHLRAHQR 126
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
Y C C + ++ H H GEKP+ C C D + L H HTG+KPY C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL-TRHQRTHTGEKPYKC 80
Query: 73 RYCDYKARETQALKVHTK 90
C + L+ H +
Sbjct: 81 PECGKSFSQRANLRAHQR 98
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPY 70
Y C C +++ H H GEKP+ C C F DN H HTG+KPY
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHT---HQRTHTGEKPY 162
Query: 71 PCRYCDYKARETQALKVHTK 90
C C AL VH +
Sbjct: 163 KCPECGKSFSRRDALNVHQR 182
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 23 YNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARET 82
+ + + + GEKP+ C C + L A H HTG+KPY C C +
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHL-AEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 83 QALKVHTK 90
+ L H +
Sbjct: 63 KDLTRHQR 70
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
Y C C + N+++H H GEKP+ C C + L+ H HTG+KPY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ-RTHTGEKPYKC 63
Query: 73 RYCDYKARETQALKVHTKRYHPK 95
C + L H + + K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNK 86
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
G C+ C R N L H + HTG+KPY C +C+Y A + +L+ H +R+H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIH-LRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAH 59
HL H GEKP+ C CE+ +L+ H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 25 TGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARET 82
+ ++K HL H GEKP+ C+ C +K + L H HTG +P+ C+ CD +
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDEL-TRHYRKHTGHRPFQCQKCDRAFSRS 78
Query: 83 QALKVHTKRY 92
L +H KR+
Sbjct: 79 DHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 25 TGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARET 82
+ ++K HL H GEKP+ C+ C +K + L H HTG +P+ C+ CD +
Sbjct: 21 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDEL-TRHYRKHTGHRPFQCQKCDRAFSRS 79
Query: 83 QALKVHTKRY 92
L +H KR+
Sbjct: 80 DHLALHMKRH 89
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHT 65
P+ + +++C C + + N+ H H E+P+TC++C R L+ H IH+
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHS 69
Query: 66 GQKPYPCRYCDYKARETQALKVH 88
+KP+ C+ C +++ L VH
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVH 92
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 19 KFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCD 76
K YT + ++K HL H GEKP+ C C+++ + L H HTG KP+ C C+
Sbjct: 25 KVYT-KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL-TRHYRKHTGAKPFQCGVCN 82
Query: 77 YKARETQALKVHTKRY 92
+ L +H KR+
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 11 YKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTL-KAHHINIH 64
YK C + + + RH H G KPF C +C NR+ ++ H+ +H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC------NRSFSRSDHLALH 94
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
Y C C+ GN+ H +H GEKP+ CN+C + LK H IH+G+KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT-HTRIHSGEKP 73
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
+KP+ C+ C+ R L A H +HTG+KPY C C + LK HT+
Sbjct: 15 DKPYKCDRCQASFRYKGNL-ASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTGQ 67
R Y+C CK +++RH +H EK + C CE F + RT H I+ HTG+
Sbjct: 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRT--KHEIH-HTGE 76
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPK 95
+ Y C C Q + H K H +
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVHSQ 104
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
HTG+KPY C +CD R+ Q L +H KRYH
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
M+ E+ FTC++C+ R L+ H ++ HTG+ PY C C + + + L+ H + H
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 7 NAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
N + C C+ ++ H+ H GE P+ C+ C + + L++H I +H+G
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
+ C C + + HL +H +P+ C C + +K H IHTG+KP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 73 RYCDYKARETQALKVHTKRY 92
+ C ++ L H++++
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 27 NIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHIN-IHTGQKPYPCRY--CDYKA 79
N+K HL H GEKP+ MCE K N + +A H N H+ +KPY C+ C +
Sbjct: 84 NLKTHLRSHTGEKPY---MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY 140
Query: 80 RETQALKVHTKRYH 93
+ +L+ H K H
Sbjct: 141 TDPSSLRKHVKTVH 154
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 28 IKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ--KPYPCRYCDYKARETQAL 85
+ RH H GEKP++C +C + + + ++H+ H G KPY C+ C L
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRM-SYHVRSHDGSVGKPYICQSCGKGFSRPDHL 81
Query: 86 KVHTKRYH 93
H K+ H
Sbjct: 82 NGHIKQVH 89
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 12 KYVC-FACKFYTYN-TGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAH---HINIHTG 66
+Y+C FA YN ++ HL H GEKPF C E C T H H HTG
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCK--EEGCEKGFTSLHHLTRHSLTHTG 60
Query: 67 QKPYPCRY--CDYKARETQALKVHTKRYH 93
+K + C CD + +K H R+H
Sbjct: 61 EKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
R +Y C C ++ ++ +H H GEKP+ C+ C L HH +HTG P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH-RVHTGSGP 74
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 6 PNAYRYKYVC-FACKFYTYN-TGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAH---H 60
P Y+ +Y+C FA YN ++ HL H GEKPF C E C T H H
Sbjct: 7 PVVYK-RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK--EEGCEKGFTSLHHLTRH 63
Query: 61 INIHTGQKPYPCRY--CDYKARETQALKVHTKRYH 93
HTG+K + C CD + +K H R+H
Sbjct: 64 SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ-KPYPCRYCDYKARETQALKVHTKRYH 93
H GEKP+ C +C + + T+K H + HT + C +CD L VH ++ H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 39 KPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH--P 94
KPF C +C F D+ T HI HTG+KP+ C C K + K H H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP 58
Query: 95 KMYD 98
+ D
Sbjct: 59 ILED 62
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC 46
+ C C + ++ H+ H GEKPF C++C
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 37
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 8/50 (16%)
Query: 51 RDNRTLKA-----HHINIHTGQKPYPCRY--CDYKARETQALKVHTKRYH 93
R+ ++ KA +HI +HTG+KP+PC + C ++ LK+H KR H
Sbjct: 67 REGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTH 115
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 31 HLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRY--CDYKARETQALK 86
H+ +H GEKPF C C + LK H HTG+KP+ C + CD + + K
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHK-RTHTGEKPFKCEFEGCDRRFANSSDRK 139
Query: 87 VH 88
H
Sbjct: 140 KH 141
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRD----NRTLKAHHINIHTGQKPYP 71
N+K H H GEKPF CEF+ D N + + H+++HT K P
Sbjct: 107 NLKIHKRTHTGEKPFK---CEFEGCDRRFANSSDRKKHMHVHTSDKSGP 152
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKPF C+ C+ R L +H + IHTG+KP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRM-IHTGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAH---HINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
G C +C F CR +L H H + +PC +C + + ++ H + H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 94 PKMY 97
P +
Sbjct: 63 PALL 66
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
EKP+ C C K ++ H +HTG+KPY C C + L H +
Sbjct: 12 EKPYGCVECG-KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHT 65
Y C C + + +H +H GEKP+ C C N L +H IHT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL-INHQRIHT 66
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 39 KPFTCNMCEFKCRDNRTLK-AHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
+P+ C + R +R+ + HI IHTGQKP+ CR C + L H +
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHT 65
+C + + RH+ +H G+KPF C +C F D+ T HI HT
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHT 73
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKPF C C R N L A H+ IHTG+KP
Sbjct: 10 EKPFKCKECGKAFRQNIHL-ASHLRIHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C +C + R +TLK+ H+ IHTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKS-HLRIHTGSGP 39
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 67 QKPYPCRYCDYKARETQALKVHTK 90
+KPYPC C + R Q LK H +
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLR 32
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM 96
H IH +P+ C YC + ++ L H K++H M
Sbjct: 28 HERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 28 IKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIH 64
++ H +H ++PF CN C F + L H H
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
KPF C++CE+ R LKA H+N H+ +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKA-HMNRHSTEK 36
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 65 TGQKPYPCRYCDYKARETQALKVHTKRY 92
+ KP+ C C+Y R LK H R+
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRH 32
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C R + L H + IHTG+KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQV-IHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
+VC C ++KRH H EKP+ C +C L H IH+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 40 PFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHP 94
F C +C LK H+ + HT +KPYPC C+ L H ++ H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPK 95
K Y C+YC+Y++ ++ LK H K H K
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSK 28
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPK 95
K Y C+YC++++ ++ LK H K H K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSK 28
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
K + C CEF+ D+ LK H H+ +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C++C R +L H IHTG+KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C R N L + H IHTG+KP
Sbjct: 10 EKPYKCNECGKVFRHNSYL-SRHQRIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
E+PF CN C RD L + H H G +P C C R+ + H K
Sbjct: 2 ERPFFCNFCGKTYRDASGL-SRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIH 64
+ C C + + RH HLG +P +C C KC +++ H+ +H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECG-KCFRDQSEVNRHLKVH 55
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 41 FTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
+ C C + + LK H I HT +PY C YC++ + L H K
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAH 59
KY+C C +K+H+ H +P+ C C F + L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 38 EKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C F R + T H IHTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTT---HQAIHTGKKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKPF C C + N L +H +HTG+KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQ-RVHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C N L A H IHTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHL-ARHRGIHTGEKP 40
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKP 40
Y C C K +T N+ ++ RH G+H GEKP
Sbjct: 13 YKCNECGKVFTQNS-HLARHRGIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
G+KP CN C R + L H IH+G+KP
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQ-RIHSGEKP 38
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C K + A H IHTG+KP
Sbjct: 10 EKPYKCNEC-GKAFSQTSKLARHQRIHTGEKP 40
>pdb|1YM9|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfinic
Form
pdb|1YMD|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfonic
Form
pdb|1YML|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfenic
Form
Length = 175
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 12 KYVCFACKF-YTYNTGNIKRHLGMHL--GEKPFTCNMCEFKCR-DNRTLKAHHINIHTGQ 67
K+V C++ Y Y G+IK + + L + F C D R + H + +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHXEFSSER 104
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKMY 97
P CR+ + R A+ + Y+P+MY
Sbjct: 105 GPRMCRFIRERDR---AVNDYPSLYYPEMY 131
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPK 95
K Y C+YC+ ++ ++ LK H K H K
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSK 28
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKPF C C + N L +H +HTG+KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C+ C R N L H + IHTG+KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQL-IHTGEKP 40
>pdb|2A2K|A Chain A, Crystal Structure Of An Active Site Mutant, C473s, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 12 KYVCFACKF-YTYNTGNIKRHLGMHL--GEKPFTCNMCEFKCR-DNRTLKAHHINIHTGQ 67
K+V C++ Y Y G+IK + + L + F C D R + H + +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHSEFSSER 104
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKMY 97
P CR+ + R A+ + Y+P+MY
Sbjct: 105 GPRMCRFIRERDR---AVNDYPSLYYPEMY 131
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPK 95
K Y C+YC+ ++ ++ LK H K H K
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSK 28
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEK 39
YVC C+ + G ++RH+ +H GEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
KP+ C C+ + D L+ H+ IHTG+K
Sbjct: 2 KPYVCIHCQRQFADPGALQ-RHVRIHTGEK 30
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C K +++ + H HTG+KP
Sbjct: 10 EKPYGCNEC-GKTFSQKSILSAHQRTHTGEKP 40
>pdb|2IFV|A Chain A, Crystal Structure Of An Active Site Mutant, C473d, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 12 KYVCFACKF-YTYNTGNIKRHLGMHL--GEKPFTCNMCEFKCR-DNRTLKAHHINIHTGQ 67
K+V C++ Y Y G+IK + + L + F C D R + H + +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHDEFSSER 104
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKMY 97
P CR+ + R A+ + Y+P+MY
Sbjct: 105 GPRMCRFIRERDR---AVNDYPSLYYPEMY 131
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKPF C C K + R H +HTG+KP
Sbjct: 10 EKPFKCGEC-GKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 38 EKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C C F CR R L HH+ +HTG+KP
Sbjct: 10 EKPYKCEECGKGFICR--RDLYTHHM-VHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C +C R + L HH ++H+G++P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHH-SVHSGERP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C N L +H IHTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHL-TNHWRIHTGEKP 40
>pdb|1YMK|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain In The Apo Form
pdb|1YS0|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Disulfide
Form
Length = 175
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 12 KYVCFACKF-YTYNTGNIKRHLGMHL--GEKPFTCNMCEFKCR-DNRTLKAHHINIHTGQ 67
K+V C++ Y Y G+IK + + L + F C D R + H + +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSER 104
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKMY 97
P CR+ + R A+ + Y+P+MY
Sbjct: 105 GPRMCRFIRERDR---AVNDYPSLYYPEMY 131
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 6 PNAYRYK-YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRD 52
P+ Y+Y Y+CF+ K +T+ + +HL ++ N+C F+ RD
Sbjct: 666 PDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQN-RFNLC-FEERD 711
>pdb|1CWT|A Chain A, Human Cdc25b Catalytic Domain With Methyl Mercury
Length = 178
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 12 KYVCFACKF-YTYNTGNIKRHLGMHL--GEKPFTCNMCEFKCR-DNRTLKAHHINIHTGQ 67
K+V C++ Y Y G+IK + + L + F C D R + H + +
Sbjct: 47 KFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSER 106
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKMY 97
P CR+ + R A+ + Y+P+MY
Sbjct: 107 GPRMCRFIRERDR---AVNDYPSLYYPEMY 133
>pdb|2UZQ|A Chain A, Protein Phosphatase, New Crystal Form
pdb|2UZQ|B Chain B, Protein Phosphatase, New Crystal Form
pdb|2UZQ|C Chain C, Protein Phosphatase, New Crystal Form
pdb|2UZQ|D Chain D, Protein Phosphatase, New Crystal Form
pdb|2UZQ|E Chain E, Protein Phosphatase, New Crystal Form
pdb|2UZQ|F Chain F, Protein Phosphatase, New Crystal Form
Length = 203
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 12 KYVCFACKF-YTYNTGNIKRHLGMHL--GEKPFTCNMCEFKCR-DNRTLKAHHINIHTGQ 67
K+V C++ Y Y G+IK + + L + F C D R + H + +
Sbjct: 57 KFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSER 116
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKMY 97
P CR+ + R A+ + Y+P+MY
Sbjct: 117 GPRMCRFIRERDR---AVNDYPSLYYPEMY 143
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C N L A+H IHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHL-ANHQRIHTGVKP 40
>pdb|1QB0|A Chain A, Human Cdc25b Catalytic Domain
pdb|1CWS|A Chain A, Human Cdc25b Catalytic Domain With Tungstate
pdb|1CWR|A Chain A, Human Cdc25b Catalytic Domain Without Ion In Catalytic
Site
Length = 211
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 12 KYVCFACKF-YTYNTGNIKRHLGMHL--GEKPFTCNMCEFKCR-DNRTLKAHHINIHTGQ 67
K+V C++ Y Y G+IK + + L + F C D R + H + +
Sbjct: 65 KFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSER 124
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKMY 97
P CR+ + R A+ + Y+P+MY
Sbjct: 125 GPRMCRFIRERDR---AVNDYPSLYYPEMY 151
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C N L H IHTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHL-VRHRGIHTGEKP 40
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKP 40
Y C C K +T N+ ++ RH G+H GEKP
Sbjct: 13 YKCNECGKVFTQNS-HLVRHRGIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C R +L H H+G+KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQA-THSGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
E+P+ C +C D L H IHTG+KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQ-KIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
GEKP++CN C K ++ H +HTG KP
Sbjct: 7 GEKPYSCNECG-KAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
+KP+ CN C N L A H IHTG+KP
Sbjct: 10 KKPYKCNECGKVFTQNSHL-ARHRGIHTGEKP 40
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKP 40
Y C C K +T N+ ++ RH G+H GEKP
Sbjct: 13 YKCNECGKVFTQNS-HLARHRGIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKPF C C + L A H IHTG+KP
Sbjct: 10 EKPFECAECGKSFSISSQL-ATHQRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C++C ++L H IH+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQ-RIHSGKKP 40
>pdb|2GHF|A Chain A, Solution Structure Of The Complete Zinc-Finger Region Of
Human Zinc-Fingers And Homeoboxes 1 (Zhx1)
Length = 102
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 12 KYVCFACKFYTYNTGNIKRH-LGMHLGEKPFTCNMCEFKCRDNRTLKAHHIN 62
YVC C F T + H L H GE+ F M + R+N+T+ IN
Sbjct: 50 SYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK---RNNQTIFEQTIN 98
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTG---QKPYPCRYCDYKARETQALKVHTKRYHP 94
E + C C F+ D H + H Y C C++ + AL H +YHP
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKPF C C L HH +HTG+KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHH-KLHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 4 PRPNAYRYK-YVCF--ACKFYTYNTGNIKRHLGMHLGEKPFTCNM 45
P+ ++ R + ++C C + + ++K H H GEKPF+C+
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSW 52
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 24 NTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRY--CDYKARE 81
++ I+ H+ H G C FK + LKAH HTG+KP+ C + C+ +
Sbjct: 11 DSSRIRSHICSHPG-----CGKTYFK---SSHLKAH-TRTHTGEKPFSCSWKGCERRFAR 61
Query: 82 TQALKVH 88
+ L H
Sbjct: 62 SDELSRH 68
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C++C L H IHTG+KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQ-QIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
KP+ CN C +L H + IHTG+KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQV-IHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ CN C N L A H +HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHL-ARHRRVHTGGKP 40
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 TGQKPYPCRYCDYKARETQALKVHTKRY 92
TG KP+ C CD+ + L +H KR+
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKPF C C D+ L H IHTG+KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKP 40
>pdb|1C25|A Chain A, Human Cdc25a Catalytic Domain
Length = 161
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 12 KYVCFACKF-YTYNTGNIKRHLGMHLGE--KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
++V C++ Y Y G+IK + +H+ E + F R + H + +
Sbjct: 44 EFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERG 103
Query: 69 PYPCRYCDYKARETQALKVHTKRYHPKMY 97
P CRY + R + K ++P++Y
Sbjct: 104 PRMCRYVRERDRLGNE---YPKLHYPELY 129
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
KP+ CN C K + A H +HTG+KP
Sbjct: 11 KPYQCNEC-GKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C +C K + A H HTG+KP
Sbjct: 10 EKPYECKVCS-KAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 38 EKPFTCNMCE--FKCRDNRTLKAHHINIHTGQKP 69
EKPF C+ C+ F + N + H HTG+KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIV---HQRTHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C C + L+A H+ IHTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRA-HVLIHTGSGP 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
GEKP+ CN C L H IHTG+K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQ-RIHTGEK 37
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
GEKP+ C C K R A H +HTG P
Sbjct: 7 GEKPYQCKEC-GKSFSQRGSLAVHERLHTGSGP 38
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C C DN + H +HTGQ+P
Sbjct: 10 EKPYKCMECGKAFGDNSSC-TQHQRLHTGQRP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPK 95
K Y C+YC+ + ++ LK H K H K
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSK 28
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
+KPF C C R L H IHTG+K P
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGP 42
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C+ C +L HI +HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIV-HIRVHTGSGP 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C++C + +L H +H+G+KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQ-RVHSGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C C D L H IHTG+KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQ-KIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 38 EKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKP 69
EKP+ C C F + N T H IHTG+KP
Sbjct: 10 EKPYRCGECGKAFAQKANLT---QHQRIHTGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 TGQKPYPCRYCDYKARETQALKVHTKRY 92
TG KP+ C CD + L +H KR+
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,612,051
Number of Sequences: 62578
Number of extensions: 135838
Number of successful extensions: 713
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 332
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)