RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7454
         (103 letters)



>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
           transition [Transcription / Cell division and chromosome
           partitioning].
          Length = 423

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 20/78 (25%)

Query: 36  LGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQ------------------KPYPCRYC 75
              KP+ C +  C  K ++   LK H ++ H  Q                  KPY C  C
Sbjct: 345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVC 404

Query: 76  DYKARETQALKVHTKRYH 93
           D + +    LK H K  H
Sbjct: 405 DKRYKNLNGLKYHRKHSH 422


>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain. 
          Length = 26

 Score = 27.7 bits (62), Expect = 0.18
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 60 HINIHTGQKPYPCRYCDYK 78
          H+  HTG+KPY C  C   
Sbjct: 5  HMRTHTGEKPYKCPVCGKS 23



 Score = 26.2 bits (58), Expect = 0.66
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 27 NIKRHLGMHLGEKPFTCNMCEFKC 50
          N++RH+  H GEKP+ C +C    
Sbjct: 1  NLRRHMRTHTGEKPYKCPVCGKSF 24


>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
           only].
          Length = 467

 Score = 27.4 bits (60), Expect = 1.3
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 29  KRHLGMHLGEKPFTCNMCEFKCRDNRTLKAH-HINIHTGQKPYPCRYCDYKARET 82
            RH+  H GEKP  C+        +R L+   H+  H              +   
Sbjct: 50  TRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSK 104


>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 25.9 bits (57), Expect = 4.9
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 12/42 (28%)

Query: 61  INIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVEYK 102
           I     +   PC  C              KR+ P++ +V YK
Sbjct: 732 ITTTDNRTSIPCPSC------------LGKRFLPQVLEVRYK 761


>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional.
          Length = 473

 Score = 25.8 bits (57), Expect = 5.3
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 1   MH-MPRPNAYRYKYVCFACKFYTY 23
           MH M +P   ++KY+  A   Y  
Sbjct: 256 MHAMWKPQ--KFKYIYLAATLYVL 277


>gnl|CDD|179147 PRK00870, PRK00870, haloalkane dehalogenase; Provisional.
          Length = 302

 Score = 25.3 bits (56), Expect = 6.7
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 69 PYPCRYCDYKARETQALKVH 88
          P+   Y D    +   L++H
Sbjct: 18 PFAPHYVDVDDGDGGPLRMH 37


>gnl|CDD|224487 COG1571, COG1571, Predicted DNA-binding protein containing a
           Zn-ribbon domain [General function prediction only].
          Length = 421

 Score = 25.4 bits (56), Expect = 7.4
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 12/45 (26%)

Query: 43  CNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKV 87
           C  C         +K+       G+  + C+ C  +ARET   +V
Sbjct: 353 CPRC------GGRMKS------AGRNGFRCKKCGTRARETLIKEV 385


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.139    0.479 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,946,144
Number of extensions: 365417
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 34
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)