RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7454
(103 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 54.7 bits (132), Expect = 9e-12
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHT---GQKPYPCRYCDYKARETQALKVHTKR 91
G C +C F CR +L H H +PC +C + + ++ H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 92 YHPKM 96
HP +
Sbjct: 61 SHPAL 65
Score = 41.2 bits (97), Expect = 2e-06
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMH---LGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
C C F ++ H H + F C C + ++ AH H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 70 YPCRYC 75
P
Sbjct: 68 APQESS 73
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 52.1 bits (126), Expect = 9e-11
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG--QKPYPCRYCDYKARETQ 83
G+ H GEKP+ C +C + + T+K HI + C +CD
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKM-HILQKHTENVAKFHCPHCDTVIARKS 59
Query: 84 ALKVHTKRYH 93
L VH ++ H
Sbjct: 60 DLGVHLRKQH 69
Score = 41.4 bits (98), Expect = 1e-06
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 26 GNIKRHLGMHLGE--KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
G +K H+ E F C C+ L H H+ P
Sbjct: 29 GTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 51.3 bits (124), Expect = 2e-10
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH 88
P C+ C + C L+ H IH +P+ C YC + ++ L H
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 40.9 bits (97), Expect = 2e-06
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
C C + + ++ H +H ++PF CN C F + L H G P
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHGDMSGPS 68
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 49.4 bits (119), Expect = 3e-09
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHT 89
M+ E+ FTC++C+ R L+ H + HTG+ PY C C + + + L+ H
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Query: 90 KRYH 93
+ H
Sbjct: 115 IKLH 118
Score = 45.2 bits (108), Expect = 1e-07
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHH--INIHTGQKPYPCRYCDYKARETQ 83
+K H H GEKPF C C L H ++ ++ + C C R
Sbjct: 21 YYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRM 80
Query: 84 ALKVH 88
L++H
Sbjct: 81 ELRLH 85
Score = 42.9 bits (102), Expect = 1e-06
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH 88
G C C K LK H+ HTG+KP+ C C + L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 37.9 bits (89), Expect = 7e-05
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
++ H+ H GE P+ C+ C + + L++H I +H+G
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 48.2 bits (116), Expect = 4e-09
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQAL 85
G++ RH+ +H G+KPF C +C + L H HTG+KP+ C C K +
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDER 78
Query: 86 KVHTKRYH 93
K H + H
Sbjct: 79 KRH-TKIH 85
Score = 37.8 bits (89), Expect = 5e-05
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 38 EKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
E+P+ C + F + T HI IHTGQKP+ CR C + L H R H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLT---RHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTH 57
Score = 37.4 bits (88), Expect = 6e-05
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 26 GNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQK 68
++ H+ H GEKPF C++C +F D R H IH QK
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFARSDERK---RHTKIHLRQK 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 46.6 bits (112), Expect = 2e-08
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK 86
+K H+ H G KP+ C C++ D+ +L H IH+ ++P+ C+ C Y +R + L
Sbjct: 23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLT 81
Query: 87 VHTKRYH 93
VH R H
Sbjct: 82 VH-LRSH 87
Score = 45.5 bits (109), Expect = 6e-08
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 33 GMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
G P C +C F +D LK H HTG KPY C+ CDY A ++ +L H
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDK--LKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKH-L 56
Query: 91 RYH 93
R H
Sbjct: 57 RIH 59
Score = 40.1 bits (95), Expect = 6e-06
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
++ +HL +H E+PF C +C + R++ L H HTG
Sbjct: 51 SLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 43.6 bits (104), Expect = 9e-08
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
G GEKP+ C +C + R +TLK+ H+ IHTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKS-HLRIHTGSGPS 40
Score = 32.1 bits (74), Expect = 0.003
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
G+KPYPC C + R Q LK H R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH-LRIH 34
Score = 23.6 bits (52), Expect = 4.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 26 GNIKRHLGMHLGEKPFT 42
+K HL +H G P +
Sbjct: 25 QTLKSHLRIHTGSGPSS 41
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 45.2 bits (108), Expect = 1e-07
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCD 76
+KRH H G KPF C C+ K + LK H HTG+KP+ CR+
Sbjct: 52 DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPS 101
Score = 45.2 bits (108), Expect = 1e-07
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARE 81
+++ H H GEKP+ C+ + F D LK H HTG KP+ C+ C K
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQ--LKRHQ-RRHTGVKPFQCKTCQRKFSR 78
Query: 82 TQALKVHTKRYH 93
+ LK H R H
Sbjct: 79 SDHLKTH-TRTH 89
Score = 34.4 bits (80), Expect = 0.001
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAH---HINIHTGQKPYPC 72
++PF C C +H H HTG+KPY C
Sbjct: 3 EKRPFMCA--YPGCNKRYFKLSHLQMHSRKHTGEKPYQC 39
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 44.7 bits (107), Expect = 1e-07
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
RH+ MHLG +P+ C +C K + L H IHTG KPY C C
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNIC 71
Score = 40.1 bits (95), Expect = 8e-06
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
Y C C K + ++ H+ +H G KP+ CN+C + + H ++ + K Y
Sbjct: 38 YGCGVCGKKFKMKH-HLVGHMKIHTGIKPYECNICAKRFMWRDSF---HRHVTSCTKSYE 93
Query: 72 CRYC 75
Sbjct: 94 AAKA 97
Score = 35.9 bits (84), Expect = 3e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 35 HLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
G+K + C C F + R H+++H G +PY C C
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRD---RHMSMHLGLRPYGCGVC 43
Score = 24.7 bits (55), Expect = 5.0
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 63 IHTGQKPYPC 72
+G K YPC
Sbjct: 4 GSSGDKLYPC 13
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 44.0 bits (105), Expect = 2e-07
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
G+ R + + C+ C + L H HTG+KPY C C
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDEC 52
Score = 36.3 bits (85), Expect = 2e-04
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
+H H GEKP+ C+ C L HH +HTG P
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGPS 75
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 44.0 bits (105), Expect = 2e-07
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK 86
+ H M +KP+ C+ C+ R L +H +HTG+KPY C C + LK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLK 62
Query: 87 VHTKRYH 93
H R H
Sbjct: 63 TH-TRIH 68
Score = 39.7 bits (94), Expect = 7e-06
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
GN+ H +H GEKP+ CN+C + LK H IH+G+KPY
Sbjct: 31 GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKPY 74
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 43.3 bits (103), Expect = 2e-07
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
KP+ C C L H +HT ++P+ C+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 45.5 bits (109), Expect = 2e-07
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
Y C C K ++ N++ H H GEKP+ C C L+AH HTG+KPY
Sbjct: 78 YKCPECGKSFSQR-ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYK 135
Query: 72 CRYC 75
C C
Sbjct: 136 CPEC 139
Score = 45.5 bits (109), Expect = 2e-07
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
Y C C K ++ + ++ H H GEKP+ C C D + L H HTG+KPY
Sbjct: 22 YACPECGKSFSRS-DHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYK 79
Query: 72 CRYC 75
C C
Sbjct: 80 CPEC 83
Score = 44.7 bits (107), Expect = 4e-07
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
Y C C K ++ +++ H H GEKP+ C C L H HTG+KPY
Sbjct: 106 YACPECGKSFSQL-AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYK 163
Query: 72 CRYC 75
C C
Sbjct: 164 CPEC 167
Score = 44.7 bits (107), Expect = 4e-07
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
Y C C K ++ ++ RH H GEKP+ C C L+AH HTG+KPY
Sbjct: 50 YKCPECGKSFSDK-KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYA 107
Query: 72 CRYC 75
C C
Sbjct: 108 CPEC 111
Score = 42.8 bits (102), Expect = 2e-06
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTGQKPYPCRYC 75
+ + GEKP+ C C F D+ L H HTG+KPY C C
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDH--LAEHQR-THTGEKPYKCPEC 55
Score = 35.1 bits (82), Expect = 0.001
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
Y C C K ++ N+ H H GEKP+ C C L H HTG+K
Sbjct: 134 YKCPECGKSFSRE-DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ-RTHTGKKT 189
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 44.1 bits (105), Expect = 2e-07
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 11 YKYVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHT 65
+ C K YT + ++K HL H GEKP+ C+ F D T H HT
Sbjct: 6 HTCDYAGCGKTYT-KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELT---RHYRKHT 61
Query: 66 GQKPYPCRYCDYKARETQALKVHTKR 91
G +P+ C+ CD + L +H KR
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 32.5 bits (75), Expect = 0.005
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
C + LKA H+ HTG+KPY C
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKA-HLRTHTGEKPYHC 38
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 44.2 bits (105), Expect = 2e-07
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 25 TGNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKAR 80
+ ++K HL H GEKP+ C F D T H HTG KP+ C C+
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT---RHYRKHTGAKPFQCGVCNRSFS 86
Query: 81 ETQALKVHTKR 91
+ L +H KR
Sbjct: 87 RSDHLALHMKR 97
Score = 29.9 bits (68), Expect = 0.057
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHT 65
+ RH H G KPF C +C F D+ L H+ H
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL---HMKRHQ 99
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 43.6 bits (104), Expect = 3e-07
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 26 GNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTG--QKPYPCRYCDYKARE 81
++ RH H GEKP++C +C FK +D + +H+ H G KPY C+ C
Sbjct: 21 YHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMS---YHVRSHDGSVGKPYICQSCGKGFSR 77
Query: 82 TQALKVHTKRYH 93
L H K+ H
Sbjct: 78 PDHLNGHIKQVH 89
Score = 42.5 bits (101), Expect = 9e-07
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
G C +C RD L H + H+G+KPY C C
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVC 41
Score = 30.5 bits (70), Expect = 0.024
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 27 NIKRHLGMHLGE--KPFTCNMC--EFKCRDNRTLKAHHINIHTGQK 68
+ H+ H G KP+ C C F D+ L H +H+G
Sbjct: 50 RMSYHVRSHDGSVGKPYICQSCGKGFSRPDH--LNGHIKQVHSGPS 93
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 44.0 bits (105), Expect = 3e-07
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
N+ H H E+P+TC++C R L+ H IH+ +KP+ C+ C
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQEC 79
Score = 42.4 bits (101), Expect = 1e-06
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
+K F C C + L H HT ++PY C C
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDIC 51
Score = 40.1 bits (95), Expect = 7e-06
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
+++ H +H EKPF C C +RTL H +H
Sbjct: 60 HLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104
Score = 27.8 bits (63), Expect = 0.33
Identities = 3/21 (14%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 55 TLKAHHINIHTGQKPYPCRYC 75
+ +K + C++C
Sbjct: 4 GSSGGRL-PSKTKKEFICKFC 23
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 42.9 bits (102), Expect = 3e-07
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 35 HLGEKPFTCNMCE--FKCRDNRTLKAHH-INIHTGQKPYPCRYCDYKARETQALKVHTKR 91
GE + C +C + N H+ + K YPC +C + + H K
Sbjct: 5 KEGEHTYRCKVCSRVYTHISN--FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 92 YHP 94
H
Sbjct: 63 IHK 65
Score = 25.6 bits (57), Expect = 1.4
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 63 IHTGQKPYPCRYCD 76
G+ Y C+ C
Sbjct: 4 TKEGEHTYRCKVCS 17
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 42.8 bits (102), Expect = 4e-07
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
HL +H +P+ C C F + + +K H IHTG+KP+ C+ C
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSD--MKKHTF-IHTGEKPHKCQVC 63
Score = 31.6 bits (73), Expect = 0.010
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 41 FTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
F C +C + + TL H + IH+ +PYPC+YC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYC 35
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 42.5 bits (101), Expect = 5e-07
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
G+H GEKP+ C C + L H +HTG+KPY C C
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLEC 48
Score = 38.2 bits (90), Expect = 3e-05
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
Y C C K ++ ++ + +H +H GEKP+ C C N L H IHT
Sbjct: 15 YGCVECGKAFSRSS-ILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ-RIHTSGPSS 71
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 43.7 bits (104), Expect = 5e-07
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRY 74
+KRH +H GEKPF C F N H+ IHTG +PY C +
Sbjct: 48 SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR---THVRIHTGDRPYVCPF 97
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
+++HL H G + C C ++ LK H + +HTG+KP+ C
Sbjct: 21 SAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQC 65
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPY 70
N++ H+ +H G++P+ C F N LK+H + H K
Sbjct: 78 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN--LKSHIL-THAKAKNN 123
Score = 28.3 bits (64), Expect = 0.25
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 38 EKPFTCNMCEFKC----RDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ C C RDN ++ H H G + + C C E+ LK H + H
Sbjct: 3 PRTIACPHKG--CTKMFRDNSAMRKHLH-TH-GPRVHVCAECGKAFVESSKLKRH-QLVH 57
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 41.4 bits (98), Expect = 7e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G+KP+ C C N +L H HTG+KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 28.7 bits (65), Expect = 0.070
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KPY C C + +L H + YH
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 24.8 bits (55), Expect = 1.9
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K + NT I+ H GEKP +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 9e-07
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C N L H IHTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGP 43
Score = 26.7 bits (60), Expect = 0.36
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
Score = 22.9 bits (50), Expect = 9.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K +T N+ ++ H +H G KP +
Sbjct: 13 YKCNECGKVFTQNS-HLANHQRIHTGVKPSGPS 44
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 42.5 bits (99), Expect = 1e-06
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG---QKPYPCRYCDYKARETQ 83
+ + E + C C F+ D H + H Y C C++ +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 84 ALKVHTKRYHP 94
AL H +YHP
Sbjct: 65 ALSEHNLKYHP 75
Score = 31.3 bits (70), Expect = 0.021
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 12 KYVCFACKFYTYNTGNIKRHLGM-HLG---EKPFTCNMCEFKCRDNRTLKAHHINIHTGQ 67
Y C C F T + H+ H + C C F + L H++ H G+
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE 77
Query: 68 KPYPCR 73
+ +
Sbjct: 78 ENFKLT 83
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 43.0 bits (102), Expect = 2e-06
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKC----RDNRTLKAHHINIHTGQKPYPCRY 74
N+K HL H GEKP+ C C + H H+ +KPY C+
Sbjct: 83 ENLKTHLRSHTGEKPYMCE--HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Score = 39.1 bits (92), Expect = 4e-05
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 26 GNIKRHLG---MHLGEKPFTCNMCEFKCRDNRTLKAH-----HINIHTGQKPYPCRY--C 75
+ H+ +H K F C+ R+ R KA H+ HTG+KP+ C + C
Sbjct: 17 EQLVHHINSEHIHGERKEFVCHWGGCS-RELRPFKAQYMLVVHMRRHTGEKPHKCTFEGC 75
Query: 76 DYKARETQALKVHTKRYH 93
+ LK H R H
Sbjct: 76 RKSYSRLENLKTH-LRSH 92
Score = 36.0 bits (84), Expect = 6e-04
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 38 EKPFTCNMCEFKCRDNRTLKAH--HINIHTGQKPYPCRYCD 76
E + C + L H +IH +K + C +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG 41
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 40.2 bits (95), Expect = 2e-06
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G+KPF C C R L H IHTG+K P
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPS 43
Score = 28.3 bits (64), Expect = 0.075
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVH 88
+ TGQKP+ C +C R L H
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 22.9 bits (50), Expect = 8.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 26 GNIKRHLGMHLGEKPFTCN 44
GN+ H +H GEK +
Sbjct: 26 GNLVTHQRIHTGEKSGPSS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C R N L H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQ-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.33
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
Score = 23.2 bits (51), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K + +N+ + RH +H GEKP +
Sbjct: 13 YKCNECGKVFRHNS-YLSRHQRIHTGEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C R L H +H+G+KP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.042
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KPY C+ C R L H +R H
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVH 35
Score = 23.3 bits (51), Expect = 7.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K + + + + +H +H GEKP +
Sbjct: 13 YNCKECGKSFRWAS-CLLKHQRVHSGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP C C N L H IHTG+ P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQ-RIHTGENPSGP 43
Score = 27.1 bits (61), Expect = 0.20
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+KP+ CR C
Sbjct: 3 SGSSGTGEKPHECREC 18
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-06
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G KP+ CN C +L H + IHTG+KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.12
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG KPY C C
Sbjct: 1 GSSGSSGTGVKPYMCNEC 18
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEK + CN C N L H IHTG+KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.11
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+K Y C C
Sbjct: 1 GSSGSSGTGEKRYKCNEC 18
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C R N L +H IHTG+KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.16
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G+KP+ C+ C
Sbjct: 1 GSSGSSGSGEKPFKCKEC 18
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C + N L +H +HTG+KP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQ-RVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.19
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G+KP+ C C
Sbjct: 1 GSSGSSGSGEKPFKCEEC 18
Score = 23.3 bits (51), Expect = 6.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
+ C C K +T N+ + H +H GEKP +
Sbjct: 13 FKCEECGKRFTQNS-QLHSHQRVHTGEKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C+ C K +++ H+ H+G+KP
Sbjct: 2 SSGSSGAGEKPYGCSECG-KAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.15
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ G+KPY C C
Sbjct: 1 GSSGSSGAGEKPYGCSEC 18
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C N L H IHTG+KP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.20
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G+KPY C C
Sbjct: 1 GSSGSSGSGEKPYKCNEC 18
Score = 24.0 bits (53), Expect = 3.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K +T N+ ++ H +H GEKP +
Sbjct: 13 YKCNECGKVFTQNS-HLTNHWRIHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 30 RHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C+ C+ F + N + H HTG+KP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIV---HQRTHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.14
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KP+ C C
Sbjct: 1 GSSGSSGTGEKPFECSEC 18
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C K + R H +HTG+KP
Sbjct: 2 SSGSSGTGEKPFKCGECG-KSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.24
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KP+ C C
Sbjct: 1 GSSGSSGTGEKPFKCGEC 18
Score = 22.9 bits (50), Expect = 9.2
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
+ C C K Y ++ +H +H GEKP +
Sbjct: 13 FKCGECGKSYNQRV-HLTQHQRVHTGEKPSGPS 44
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 40.6 bits (96), Expect = 3e-06
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 27 NIKRHL-GMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYC 75
+ H H+ +K F+C F + + H+ +H+ + Y C +
Sbjct: 24 YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLK---EHMKLHSDTRDYICEFS 74
Score = 38.7 bits (91), Expect = 2e-05
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 6/42 (14%)
Query: 35 HLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPC 72
G C+ F R L H H QK + C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQY--LNHHKKYQHIHQKSFSC 41
Score = 27.9 bits (63), Expect = 0.19
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 24 NTGNIKRHLGMHLGEKPFTCNMC 46
++K H+ +H + + C
Sbjct: 52 FKKHLKEHMKLHSDTRDYICEFS 74
Score = 24.8 bits (55), Expect = 2.8
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 64 HTGQKPYPCRY--CDYKARETQALKVHTKRYH 93
+G PC + C Q L H K H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C N L H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR-GIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.32
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
Score = 22.8 bits (50), Expect = 9.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K +T N+ ++ RH G+H GEKP +
Sbjct: 13 YKCNECGKVFTQNS-HLVRHRGIHTGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C++C R +L H IHTG+KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.032
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KPY C C R +L VH +R H
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-06
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C K + A H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYKCNECG-KAFSQTSKLARHQRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.22
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 59 HHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 39.8 bits (94), Expect = 4e-06
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C + L H IHTG+KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQ-RIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.14
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+KP+ C C
Sbjct: 3 SGSSGTGEKPFECAEC 18
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE+P+ C +C K +R+ H IHTG+KP
Sbjct: 2 SSGSSGTGERPYICTVCG-KAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.19
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG++PY C C
Sbjct: 3 SGSSGTGERPYICTVC 18
Score = 24.0 bits (53), Expect = 3.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y+C C K +T + N+ +H +H GEKP +
Sbjct: 13 YICTVCGKAFTDRS-NLIKHQKIHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-06
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C K + H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYRCGECG-KAFAQKANLTQHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.10
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYRCGEC 18
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-06
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G+K F CN C+ + +L H IHTG+KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.24
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ G+K + C C ++ +L VH +R H
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 39.4 bits (93), Expect = 4e-06
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C L HH +HTG+KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHH-KLHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.14
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KP+ C C
Sbjct: 1 GSSGSSGTGEKPFKCVEC 18
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 5e-06
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C + N L +H +HTG+KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.15
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G+KP+ C C
Sbjct: 1 GSSGSSGSGEKPFQCEEC 18
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-06
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C+ C R N L H + IHTG+KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.11
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYKCHEC 18
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-06
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C F R + T H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLT---THQAIHTGKKPSGP 43
Score = 29.0 bits (66), Expect = 0.039
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KPY C C +L H + H
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-06
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C + L+ H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQ-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.19
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 3 SGSSGTGEKPYNCEEC 18
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 40.0 bits (94), Expect = 5e-06
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 26 GNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQ 83
N+ + + +P+ C + C+ + + L HI IHTGQKP+ CR C +
Sbjct: 7 NNLLNY--VVPKMRPYACPVESCDRRFSRSDELT-RHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 84 ALKVHTKR 91
L H +
Sbjct: 64 HLTTHIRT 71
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 6e-06
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C D+ L H IHTG+KP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.032
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KP+ C C
Sbjct: 1 GSSGSSGTGEKPFDCIDC 18
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 6e-06
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C +C K + A H HTG+KP
Sbjct: 2 SSGSSGTGEKPYECKVCS-KAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C+ C
Sbjct: 1 GSSGSSGTGEKPYECKVC 18
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 6e-06
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C K R+ A H H+G+KP
Sbjct: 2 SSGSSGTGEKPYKCNECG-KAFRARSSLAIHQATHSGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.048
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KPY C C R +L +H + H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIH-QATH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 39.0 bits (92), Expect = 6e-06
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR 73
GEKP+ C C K T H +HTG+KP
Sbjct: 2 SSGSSGTGEKPYECKECG-KAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.073
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C+ C
Sbjct: 1 GSSGSSGTGEKPYECKEC 18
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-06
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE+P CN C K H IHTG+KP
Sbjct: 2 SSGSSGTGERPHKCNECG-KSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.16
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG++P+ C C
Sbjct: 1 GSSGSSGTGERPHKCNEC 18
Score = 22.8 bits (50), Expect = 9.3
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
+ C C K + + ++ +H +H GEKP +
Sbjct: 13 HKCNECGKSFIQSA-HLIQHQRIHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-06
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR 73
GEKP+ C+ C + L H IHTG+KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQ-RIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.11
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 60 HINIHTGQKPYPCRYC 75
+ +G+KPY C YC
Sbjct: 3 SGSSGSGEKPYVCDYC 18
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-06
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEK + C C K H +H+G+KP
Sbjct: 3 SGSSGTGEKLYNCKECG-KSFSRAPCLLKHERLHSGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.067
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+K Y C+ C
Sbjct: 1 GSSGSSGTGEKLYNCKEC 18
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 39.1 bits (92), Expect = 7e-06
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C+ CE K +++ H H +KP
Sbjct: 5 SSGEKPFGCSCCE-KAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.6 bits (57), Expect = 0.91
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+G+KP+ C C+ L VH ++ H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVH-QQTH 33
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-06
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
EKP+ C C + R N + H +H G+K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDM---HQRVHMGEKTSGP 43
Score = 28.2 bits (64), Expect = 0.100
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ + +KPY C C
Sbjct: 1 GSSGSSGSVEKPYKCEDC 18
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 41.1 bits (97), Expect = 7e-06
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPC 72
N+K H H GEKPF C F +R H+++HT K P
Sbjct: 106 ENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDR---KKHMHVHTSDKSGPS 153
Score = 40.3 bits (95), Expect = 1e-05
Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 1/64 (1%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHT 89
+ + C+ L H+ + P + Y + K
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELV-THVTMEHVGGPEQNNHVCYWEECPREGKSFK 73
Query: 90 KRYH 93
+Y
Sbjct: 74 AKYK 77
Score = 38.8 bits (91), Expect = 4e-05
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 27 NIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRY 74
+ H+ +H GEKPF C F +N H HTG+KP+ C +
Sbjct: 77 KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK---IHKRTHTGEKPFKCEF 125
Score = 38.0 bits (89), Expect = 1e-04
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKA--------HHINIHTGQKPYPCRYCD 76
+ H+ M P N + R K+ +HI +HTG+KP+PC +
Sbjct: 39 HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG 97
Score = 26.9 bits (60), Expect = 1.0
Identities = 7/41 (17%), Positives = 9/41 (21%)
Query: 48 FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH 88
+ I Q P + CD L H
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTH 44
Score = 24.9 bits (55), Expect = 4.0
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 24 NTGNIKRHLGMHLGEKPFTCN 44
N+ + K+H+ +H +K +
Sbjct: 134 NSSDRKKHMHVHTSDKSGPSS 154
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 7e-06
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C+ C + L H I HT +KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 27.5 bits (62), Expect = 0.16
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 60 HINIHTGQKPYPCRYC 75
+ G+KPY C C
Sbjct: 3 SGSSGEGEKPYQCSEC 18
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C +C R + L HH ++H+G++P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGP 43
Score = 29.0 bits (66), Expect = 0.052
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C+ C
Sbjct: 1 GSSGSSGTGEKPYKCQVC 18
Score = 22.9 bits (50), Expect = 9.3
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K + ++ ++ +H +H GE+P +
Sbjct: 13 YKCQVCGKAFRVSS-HLVQHHSVHSGERPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 8e-06
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE+PF CN C L H +H+ +K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGP 43
Score = 26.3 bits (59), Expect = 0.42
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 60 HINIHTGQKPYPCRYC 75
+ +G++P+ C C
Sbjct: 3 SGSSGSGERPFKCNEC 18
Score = 23.3 bits (51), Expect = 6.1
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
+ C C K + + ++ HL +H EK +
Sbjct: 13 FKCNECGKGFGRRS-HLAGHLRLHSREKSSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-06
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C R + L H + IHTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.10
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYKCNEC 18
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 8e-06
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C DN + H +HTGQ+P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYKCMEC 18
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-06
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 30 RHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C F R N H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLF---THQKIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.098
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYRCAEC 18
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 9e-06
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP++CN+C F + H+ +HT +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLN---QHLRVHTQETLSGP 43
Score = 29.0 bits (66), Expect = 0.042
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYSCNVC 18
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 9e-06
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G P+ C+ CE K + H +HT +KP
Sbjct: 3 SGSSGAGVNPYKCSQCE-KSFSGKLRLLVHQRMHTREKPSGP 43
Score = 27.5 bits (62), Expect = 0.15
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVH 88
+ G PY C C+ L VH
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 24.0 bits (53), Expect = 3.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K ++ + H MH EKP +
Sbjct: 13 YKCSQCEKSFSGKL-RLLVHQRMHTREKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.6 bits (91), Expect = 9e-06
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C+ L H HTG+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS 43
Score = 26.7 bits (60), Expect = 0.29
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYECNEC 18
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 9e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 31 HLGMHLGEKPFTCNMCEFKC-RDNRTLKAHHINIHTGQKPYPC 72
+GEK + C C+ C +L+ H N+H G+KP
Sbjct: 3 SGSSGMGEKTWKCRECD-MCFSQASSLRLHQ-NVHVGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.089
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ G+K + CR CD + +L++H + H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVH 35
Score = 23.3 bits (51), Expect = 7.0
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
+ C C ++ +++ H +H+GEKP +
Sbjct: 13 WKCRECDMCFSQA-SSLRLHQNVHVGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 9e-06
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ-KVHTGERPSGP 43
Score = 27.1 bits (61), Expect = 0.23
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYKCEKC 18
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C++C L H + +HT +KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGP 43
Score = 27.1 bits (61), Expect = 0.21
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KP+ C C L H H
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVH 35
Score = 23.2 bits (51), Expect = 7.0
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
+ C C K + + + RH +H EKP +
Sbjct: 13 FKCDICGKSFCGRS-RLNRHSMVHTAEKPSGPS 44
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 39.5 bits (93), Expect = 1e-05
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 7/69 (10%)
Query: 29 KRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQA 84
K H H + P+ C F H +H G C + +
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLK---RHEKVHAGYPCKKDDSCSFVGKTWTL 76
Query: 85 LKVHTKRYH 93
H H
Sbjct: 77 YLKHVAECH 85
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
G KP+ C+ C F + + H HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIV---HQRSHTGVKPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG KPY C C
Sbjct: 1 GSSGSSGTGVKPYGCSQC 18
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G++P+ C C + +L H HTG+KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHR-RSHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.10
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TGQ+PY C C
Sbjct: 1 GSSGSSGTGQRPYECIEC 18
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C+ C L H HTG++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQ-QSHTGERHSGP 43
Score = 27.5 bits (62), Expect = 0.15
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KPY C C L +H ++ H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.2 bits (90), Expect = 1e-05
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G KP+ CN C R L H HTG+
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS 43
Score = 27.1 bits (61), Expect = 0.24
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG KPY C C R L +H R H
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C F CR + L HH +HTG+KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRD--LYTHH-MVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.33
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYKCEEC 18
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 1e-05
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C+ C K T H IHTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECG-KAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 28.2 bits (64), Expect = 0.10
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G+KPY C C
Sbjct: 1 GSSGSSGSGEKPYKCSEC 18
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C++C K +R + H IH+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCG-KAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 28.6 bits (65), Expect = 0.060
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KPY C C Q+L VH +R H
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
+GEK + C++C K + H +HTG+KP
Sbjct: 3 SGSSGMGEKCYKCDVCG-KEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.42
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ G+K Y C C
Sbjct: 1 GSSGSSGMGEKCYKCDVC 18
Score = 22.9 bits (50), Expect = 9.3
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K ++ ++ +++ H +H GEKP +
Sbjct: 13 YKCDVCGKEFSQSS-HLQTHQRVHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C N L H IHTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.22
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYKCNEC 18
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 39.0 bits (92), Expect = 2e-05
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCD 76
++ H+ H GEKPF C++C K + K H +I P +
Sbjct: 17 DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQH-ILPILEDKVE 65
Score = 37.1 bits (87), Expect = 8e-05
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 39 KPFTCNMCE--FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
KPF C +C F D+ L HI HTG+KP+ C C K + K H +
Sbjct: 2 KPFQCRICMRNFSRSDH--LT-THIRTHTGEKPFACDICGRKFARSDERKRH-RDIQ 54
Score = 33.2 bits (77), Expect = 0.002
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAH--HINIHTGQK 68
KRH + P + E N L+ + G++
Sbjct: 45 DERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G K F C C K ++ + H IHTG+KP
Sbjct: 2 SSGSSGTGGKHFECTECG-KAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.095
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG K + C C
Sbjct: 1 GSSGSSGTGGKHFECTEC 18
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G KP+ CN C K + A H +HTG+KP
Sbjct: 3 SGSSGTGGKPYQCNECG-KAFSQTSKLARHQRVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.16
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 59 HHINIHTGQKPYPCRYC 75
+ TG KPY C C
Sbjct: 2 SSGSSGTGGKPYQCNEC 18
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G+KP+ CN C N L H IHTG+KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.24
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGKKPYKCNEC 18
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE PF C+ C K ++T H IHTG++P
Sbjct: 3 SGSSGTGENPFICSECG-KVFTHKTNLIIHQKIHTGERPSGP 43
Score = 26.7 bits (60), Expect = 0.32
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+ P+ C C
Sbjct: 3 SGSSGTGENPFICSEC 18
Score = 23.6 bits (52), Expect = 4.3
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
++C C K +T+ T N+ H +H GE+P +
Sbjct: 13 FICSECGKVFTHKT-NLIIHQKIHTGERPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C F R N H IHT QKP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLI---KHQKIHTKQKPSGP 43
Score = 28.2 bits (64), Expect = 0.098
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYICAEC 18
Score = 24.4 bits (54), Expect = 2.2
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y+C C K +T + N+ +H +H +KP +
Sbjct: 13 YICAECGKAFTIRS-NLIKHQKIHTKQKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C++C + +L H +H+G+KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.022
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYECDVC 18
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 38.7 bits (91), Expect = 2e-05
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 29 KRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
KR+ + F C+ C T+ H + G
Sbjct: 36 KRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA-DNCAGPDGVEGENS 81
Score = 38.7 bits (91), Expect = 2e-05
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG----QKPYPCRYC 75
G+ H GEKP+ C+ C+ K + L H + + C C
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCD-KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC 53
Score = 32.1 bits (74), Expect = 0.006
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
HTG+KPY C +CD R+ Q L +H KRYH
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
Score = 28.3 bits (64), Expect = 0.19
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMC 46
+VC C K +T + RH G
Sbjct: 48 FVCSKCGKTFTRR-NTMARHADNCAGPDGVEGENS 81
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C++C K ++ H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYECSICG-KSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYECSIC 18
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 37.5 bits (88), Expect = 2e-05
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
G GEKP+ C C + L+AH IHTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV-LIHTGSGPS 40
Score = 27.1 bits (61), Expect = 0.20
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
G+KPY C C + + L+ H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH-VLIH 34
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
K C+ C L H IHTG+KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQ-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.38
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 60 HINIHTGQKPYPCRYC 75
+ + K + C C
Sbjct: 3 SGSSGSSTKSHQCHEC 18
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C+ C L+ H HTG++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQ-KCHTGERHSGP 43
Score = 27.5 bits (62), Expect = 0.18
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ TG+KPY C C L++H ++ H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCH 35
Score = 23.3 bits (51), Expect = 6.8
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K +T+ ++ H H GE+ +
Sbjct: 13 YKCSDCGKSFTWK-SRLRIHQKCHTGERHSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C N L H +HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-RVHTGGKPSGP 43
Score = 29.0 bits (66), Expect = 0.046
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYKCNEC 18
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 37.5 bits (88), Expect = 2e-05
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
G GEKP+ C+ C K + HI +HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCG-KAFSQKGSLIVHIRVHTGSGPS 40
Score = 28.3 bits (64), Expect = 0.072
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
G+KPY C C + +L VH R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVH 34
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C L AH HTG+KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.17
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 59 HHINIHTGQKPYPCRYC 75
+ +G+KPY C C
Sbjct: 2 SSGSSGSGEKPYGCNEC 18
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C L H IHTG+KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.21
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KPY C C
Sbjct: 1 GSSGSSGTGEKPYICNEC 18
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C C K R H +HTG+K
Sbjct: 3 SGSSGSGEKPYKCVECG-KGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 26.7 bits (60), Expect = 0.39
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 60 HINIHTGQKPYPCRYC 75
+ +G+KPY C C
Sbjct: 3 SGSSGSGEKPYKCVEC 18
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
GE P+ C+ C F + H H G+KP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLI---SHQRTHAGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.068
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+ PY C C
Sbjct: 1 GSSGSSGTGENPYECHEC 18
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
G+KP+ C C L H +HTG++
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGP 43
Score = 26.7 bits (60), Expect = 0.30
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G+KPY C+ C
Sbjct: 1 GSSGSSGSGKKPYECKEC 18
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C N +H H+G+KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQ-RSHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.21
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G+KP+ C C
Sbjct: 1 GSSGSSGSGEKPFKCEEC 18
Score = 22.9 bits (50), Expect = 9.4
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
+ C C K + N+ H H GEKP +
Sbjct: 13 FKCEECGKGFYTNS-QCYSHQRSHSGEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ C+ C K ++ H IHTG+ P
Sbjct: 3 SGSSGTGEKPYECSDCG-KSFIKKSQLHVHQRIHTGENPSGP 43
Score = 27.9 bits (63), Expect = 0.14
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVH 88
+ TG+KPY C C + L VH
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 39.5 bits (93), Expect = 4e-05
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 31 HLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCD 76
+ + K + C+ + + L+AH HTG+KP+PC+
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWK--LQAHLC-KHTGEKPFPCKEEG 49
Score = 39.1 bits (92), Expect = 6e-05
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKC----RDNRTLKAHHINIHTGQKPYPC--RYCDYKA 79
++ HL H GEKPF C E C L H + HTG+K + C CD +
Sbjct: 28 WKLQAHLCKHTGEKPFPCK--EEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRF 84
Query: 80 RETQALKVHTKRYH 93
+K H
Sbjct: 85 TTKANMKKH-FNRF 97
Score = 36.0 bits (84), Expect = 6e-04
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKC----RDNRTLKAHHINIHTGQKPYPCRYCDYKARET 82
+K H H + P+ C C LK H +H G C + +
Sbjct: 121 QLKVHQFSHTQQLPYECP--HEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTW 177
Query: 83 QALKVHTKRYH 93
H H
Sbjct: 178 TLYLKHVAECH 188
Score = 34.9 bits (81), Expect = 0.001
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 26 GNIKRHLGMHLGEK--PFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPC 72
N+K+H K + C+ FK + LK H HT Q PY C
Sbjct: 88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ--LKVHQF-SHTQQLPYEC 137
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE+ + C+ C K ++ + H IH G+KP
Sbjct: 3 SGSSGTGERHYECSECG-KAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.28
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 59 HHINIHTGQKPYPCRYC 75
+ TG++ Y C C
Sbjct: 2 SSGSSGTGERHYECSEC 18
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE+ + C+ C TL H IHTG+KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQ-RIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.090
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG++ Y C C
Sbjct: 1 GSSGSSGTGERHYECSEC 18
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE+ C+ C H IHTG+KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHR-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.19
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ G++ + C C
Sbjct: 1 GSSGSSGHGERGHRCSDC 18
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 36.7 bits (86), Expect = 5e-05
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP+ CN C F + + H H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIV---HERTHAGVSGPSS 43
Score = 28.7 bits (65), Expect = 0.062
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G+KPY C C
Sbjct: 1 GSSGSSGSGEKPYECNEC 18
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 36.5 bits (85), Expect = 6e-05
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
G GE P+ C C K R A H + P
Sbjct: 2 SSGSSGGETPYLCGQCG-KSFTQRGSLAVHQRSCSQSGPS 40
Score = 25.7 bits (57), Expect = 0.78
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
G+ PY C C + +L VH +R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH-QRSC 34
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 7e-05
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
GE+P+ CN C F + H+ H +K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLI---EHLKRHFREKSSGP 43
Score = 29.0 bits (66), Expect = 0.042
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ +G++PY C C
Sbjct: 1 GSSGSSGSGERPYGCNEC 18
Score = 23.6 bits (52), Expect = 5.0
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
Y C C K + ++ ++ HL H EK +
Sbjct: 13 YGCNECGKNFGRHS-HLIEHLKRHFREKSSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.1 bits (84), Expect = 1e-04
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 31 HLGMHLGEKPFTCN--MCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C ++ + L H H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELS-RHRRSHSGVKPSGP 45
Score = 26.9 bits (60), Expect = 0.31
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 60 HINIHTGQKPYPCRY--CDYKARETQALKVHTKRYH 93
+ TG+KP+ C + C ++ + L H +R H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRH-RRSH 37
Score = 25.7 bits (57), Expect = 0.76
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 27 NIKRHLGMHLGEKPFTCN 44
+ RH H G KP +
Sbjct: 29 ELSRHRRSHSGVKPSGPS 46
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.0 bits (84), Expect = 1e-04
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE P+ C+ C K + + H H G+
Sbjct: 5 SSGENPYECSECG-KAFNRKDQLISHQRTHAGESGPSS 41
Score = 25.6 bits (57), Expect = 0.87
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 62 NIHTGQKPYPCRYC 75
+ +G+ PY C C
Sbjct: 3 SGSSGENPYECSEC 16
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 1e-04
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEK TC+ C L+ H +H G+K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ-RVHMGEKCSGP 43
Score = 29.5 bits (67), Expect = 0.027
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ +G+K + C C AL++H +R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVH 35
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 35.9 bits (84), Expect = 1e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTG 66
+VC C + + ++KRH H EKP+ C +C F RD L H IH+G
Sbjct: 3 FVCEVCTRAFARQE-HLKRHYRSHTNEKPYPCGLCNRAFTRRDL--LIRHAQKIHSG 56
Score = 35.5 bits (83), Expect = 2e-04
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ F C +C LK H+ HT +KPYPC C+ L H ++ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 1e-04
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP C C K ++ H H K
Sbjct: 2 SSGSSGTGEKPCKCTECG-KAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 26.0 bits (58), Expect = 0.61
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+KP C C
Sbjct: 3 SGSSGTGEKPCKCTEC 18
Score = 23.3 bits (51), Expect = 5.8
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCN 44
C C K + + + + H H+ +K +
Sbjct: 13 CKCTECGKAFCWKS-QLIMHQRTHVDDKHSGPS 44
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.9 bits (81), Expect = 3e-04
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
G++ + C C R +L H IHTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHE-RIHTGSGPS 39
Score = 24.8 bits (55), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 64 HTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+GQ+ Y C+ C R+ +L +H +R H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH-ERIH 33
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.9 bits (81), Expect = 3e-04
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKPF C C F + H+ H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLF---KHLRSHERTDPSGP 43
Score = 27.5 bits (62), Expect = 0.14
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ TG+KP+ C+ C
Sbjct: 1 GSSGSSGTGEKPFQCKEC 18
Score = 24.9 bits (55), Expect = 1.9
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTC 43
+ C C ++++ ++ +HL H P
Sbjct: 13 FQCKECGMNFSWSC-SLFKHLRSHERTDPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.0 bits (79), Expect = 6e-04
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GE P+ C C K + H H+GQ
Sbjct: 3 SGSSGTGENPYECCECG-KVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 27.5 bits (62), Expect = 0.19
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 60 HINIHTGQKPYPCRYC 75
+ TG+ PY C C
Sbjct: 3 SGSSGTGENPYECCEC 18
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 33.9 bits (77), Expect = 0.001
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
KY+C C +K+H+ H +P+ C C F + L H+ K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLT-KHMKSKAHSK 56
Score = 30.1 bits (67), Expect = 0.022
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 41 FTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRY 92
+ C C + + LK H I HT +PY C YC++ + L H K
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.7 bits (75), Expect = 0.001
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
GEKP++C C+ DN L H +HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQ-KMHTVKSGPSS 41
Score = 25.4 bits (56), Expect = 0.87
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 64 HTGQKPYPCRYCD----YKARETQALKVHT 89
+G+KPY C C R Q K+HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 32.1 bits (73), Expect = 0.003
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
GE PF C+ C+ + R H H +
Sbjct: 2 SSGSSGAGENPFKCSKCD-RVFTQRNYLVQHERTHARKSG 40
Score = 25.2 bits (55), Expect = 1.2
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTK 90
+ G+ P+ C CD + L H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.8 bits (72), Expect = 0.005
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
K C +C RD L H H+G+KPY
Sbjct: 9 TRKQVACEICGKIFRDVYHLN-RHKLSHSGEKPYSSGPS 46
Score = 29.1 bits (65), Expect = 0.051
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC 46
R + C C + ++ RH H GEKP++
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 31.9 bits (72), Expect = 0.010
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 13 YVCFACKFYTYNTGNIKRHL-GMHLGEKPFTCNMCEFK--CRDNRTLKA-----HHINIH 64
+C + H+ H+G ++C ++ R+ ++ KA +HI +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 65 TGQKPYPC 72
TG+K P
Sbjct: 86 TGEKSGPS 93
Score = 30.7 bits (69), Expect = 0.026
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+ + C+ L H H G C ++ + K +Y
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC-PREGKSFKAKYK 77
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.011
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
KPF C++CE+ R LKA H+N H+ +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKA-HMNRHSTEK 36
Score = 26.4 bits (57), Expect = 0.38
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 68 KPYPCRYCDYKARETQALKVHTKRY 92
KP+ C C+Y R LK H R+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.8 bits (69), Expect = 0.015
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 24 NTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKA-HHINIHTGQKPYPCRYCDYKARET 82
++G+ + +HLG++ C+ C + + +K C C + +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCG---------IIFIRRSTLSRRKTPMCEKCRKDSCQE 52
Query: 83 QALKVH 88
AL
Sbjct: 53 AALNKD 58
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.9 bits (68), Expect = 0.021
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
K + CN C F + T H IHT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLT---RHQKIHTRKSGPSS 43
Score = 28.3 bits (64), Expect = 0.074
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 58 AHHINIHTGQKPYPCRYC 75
+ T K Y C C
Sbjct: 1 GSSGSSGTDSKSYNCNEC 18
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 29.6 bits (67), Expect = 0.021
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKR 91
TG KP+ C CD + L +H KR
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 24.2 bits (53), Expect = 2.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 31 HLGMHLGEKPFTCNMCE 47
G KPF C C+
Sbjct: 2 STRGSTGIKPFQCPDCD 18
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.1 bits (69), Expect = 0.028
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
L F C +C + +LK H I + C C + T + H
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQH---IRYTEHTKVCPVCKKEFTSTDSALDHVC 121
Query: 91 RYH 93
+ H
Sbjct: 122 KKH 124
Score = 28.0 bits (61), Expect = 0.40
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 1 MHMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHH 60
++ + ++VC C ++ ++K+H+ E C +C+ + + H
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHV 120
Query: 61 INIHTG 66
H
Sbjct: 121 CKKHNI 126
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.9 bits (66), Expect = 0.050
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 39 KPFTCNMCEFKCRDN-RTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHP 94
C C R LK H Q C++C + + L HT H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 30.1 bits (67), Expect = 0.056
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 12 KYVCFACKFYTYNTGNIKRHLGM-----HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
K+ C C + H+ + N + R+L
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME-GKEDA 77
Query: 67 QKPYPCRYCDYKARETQALKVHTKRYHP 94
QK C YC + Q L VH +
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 30.1 bits (67), Expect = 0.059
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 1 MHMPRPNAYRYK----YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTL 56
+HM YR ++ ++ G +K C C + L
Sbjct: 37 VHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDL 96
Query: 57 KAHHI-NIHTGQKPYP 71
H I H + P
Sbjct: 97 SVHMIKTKHYQKVSGP 112
Score = 29.3 bits (65), Expect = 0.11
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVH 88
+ +I TG + C+ C L VH
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVH 38
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 28.9 bits (65), Expect = 0.081
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 29 KRHLGMHLGEKPFTCNMCEFKCRDNRT--LKAHHINIHTGQKPYPCRY 74
+ C+ ++ LKAH HTG+KP+ C +
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAH-TRTHTGEKPFSCSW 52
Score = 27.0 bits (60), Expect = 0.44
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 25 TGNIKRHLGMHLGEKPFTCN 44
+ ++K H H GEKPF+C+
Sbjct: 32 SSHLKAHTRTHTGEKPFSCS 51
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 27.9 bits (61), Expect = 0.12
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPK 95
K Y C+YC++++ ++ LK H K H K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSK 28
Score = 24.4 bits (52), Expect = 1.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
K + C CEF+ D+ LK H H+ +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 0.93
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 10 RYKYVCFACKFYTYNT-GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
+ C C+ T +K+H+ ++ FTC+ C + R +K H + H
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Query: 69 PYP 71
P
Sbjct: 91 SGP 93
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.1 bits (54), Expect = 1.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 64 HTGQKPYPCRYCDY----KARETQALKVHT 89
+G++P+ CR C KA + LKVHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.4 bits (52), Expect = 2.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 65 TGQKPYPCRYCDYKARETQALKVHTKRY 92
+ KPY C C Y + L VH +++
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
Score = 23.6 bits (50), Expect = 5.0
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
KP+ C C + L H+ HTG+K
Sbjct: 8 KPYKCPQCSYASAIKANLNV-HLRKHTGEK 36
Score = 22.9 bits (48), Expect = 7.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEK 39
Y C C + + N+ HL H GEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding
protein; NMR {Andes virus}
Length = 57
Score = 24.6 bits (53), Expect = 2.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 43 CNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQA 84
C++C +C + L++H + GQ PY + QA
Sbjct: 6 CDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQA 47
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Length = 1166
Score = 26.2 bits (57), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 54 RTLKAHHINIHTGQ---KPY------PCRYCDYKA 79
RT + I G+ +PY PC YC +K+
Sbjct: 1094 RTFQEAGEQITDGRVSIEPYKMKNKTPCTYCAFKS 1128
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 2.9
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPK 95
H N+ G+K + + L+ +
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 25.2 bits (54), Expect = 3.6
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
R VC C ++ + H K TC C + + ++ H + +H
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Query: 70 YPC 72
P
Sbjct: 99 APT 101
Score = 24.1 bits (51), Expect = 9.3
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH 88
++ + C +C K +H C YC + + + H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEH 61
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 24.0 bits (51), Expect = 4.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 41 FTCNMCEFKCRDNRTLKAHHINIHT 65
F CN C+ + + +LK H + H+
Sbjct: 11 FFCNECDCRFSEEASLKRHTLQTHS 35
Score = 23.6 bits (50), Expect = 4.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 70 YPCRYCDYKARETQALKVHTKRYH 93
+ C CD + E +LK HT + H
Sbjct: 11 FFCNECDCRFSEEASLKRHTLQTH 34
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 155
Score = 25.0 bits (54), Expect = 4.3
Identities = 9/53 (16%), Positives = 12/53 (22%)
Query: 15 CFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ 67
F + +I HL L K F N + G
Sbjct: 45 SFNVDLLAGKSKDIALHLNPRLNIKAFVRNSFLQESWGEEERNITSFPFSPGM 97
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 25.4 bits (55), Expect = 5.1
Identities = 6/64 (9%), Positives = 15/64 (23%)
Query: 12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
+ VC C + N + + + C+ + + +
Sbjct: 104 ECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVS 163
Query: 72 CRYC 75
C
Sbjct: 164 RGGC 167
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 23.7 bits (50), Expect = 5.4
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 64 HTGQKPYPCRYCDYKARETQALKVHTKRYH 93
+G+KPY C C + + + H + +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 23.2 bits (49), Expect = 6.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
KP+ C C+ + D L+ H+ IHTG+K
Sbjct: 2 KPYVCIHCQRQFADPGALQ-RHVRIHTGEK 30
Score = 22.8 bits (48), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEK 39
YVC C+ + G ++RH+ +H GEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 7.3
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 3/17 (17%)
Query: 81 ETQAL-KVHT--KRYHP 94
E QAL K+ K Y
Sbjct: 18 EKQALKKLQASLKLYAD 34
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 22.9 bits (48), Expect = 7.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKM 96
+ Y C C+ E + +K H K HP++
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPEV 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.2 bits (49), Expect = 7.6
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHT 65
EK F CN CE ++ L H IHT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYL-TQHERIHT 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.479
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,633,360
Number of extensions: 80667
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 439
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)