RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7454
         (103 letters)



>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 39.6 bits (93), Expect = 1e-06
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           KP+ C  C         L  H   +HT ++P+ C
Sbjct: 3  GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37



 Score = 26.9 bits (60), Expect = 0.081
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 65 TGQKPYPCRYCDYKARETQALKVHTKRYH 93
          +  KPY C+ C         L  H K+ H
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29



 Score = 24.2 bits (53), Expect = 1.1
 Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 13 YVCFACKFYTYNTGNIKRHL-GMHLGEKPFTCNM 45
          Y+C +C        ++  H+  +H  E+P  C +
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 35.0 bits (81), Expect = 6e-05
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
           H+G+KPY C  C  +  ++  +K+H  + H
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQKH 32



 Score = 33.8 bits (78), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
          H GEKP+ C +C  +   + T+K H +  HT 
Sbjct: 3  HSGEKPYECYICHARFTQSGTMKMHILQKHTE 34


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
          protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 38

 Score = 32.8 bits (75), Expect = 6e-04
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
          R        + + C+ C      +  L  H    HTG
Sbjct: 2  RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTG 37



 Score = 29.0 bits (65), Expect = 0.018
 Identities = 5/33 (15%), Positives = 9/33 (27%)

Query: 58 AHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
                   ++ Y C  C      +  L  H +
Sbjct: 1  GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 33

 Score = 31.4 bits (72), Expect = 0.002
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
          +H GEKP+ C  C      +  L  H   +HTG
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQR-VHTG 32



 Score = 31.1 bits (71), Expect = 0.002
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
          IH+G+KPY C  C      +  L  H +R H
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQH-QRVH 30


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 30.4 bits (69), Expect = 0.004
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMY 97
           HTG+KPY C +CD   R+ Q L +H KRYH   +
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36



 Score = 27.3 bits (61), Expect = 0.065
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
          H GEKP+ C+ C+   R  + L   H   +    
Sbjct: 3  HTGEKPYACSHCDKTFRQKQLLD-MHFKRYHDPN 35


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 37

 Score = 28.5 bits (64), Expect = 0.018
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 60 HINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM 96
               TG KP+ C  CD     +  L +H ++ H  +
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALH-RKRHMLV 37



 Score = 25.8 bits (57), Expect = 0.21
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHH 60
                G KPF C  C+     +  L  H 
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31


>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 28.6 bits (63), Expect = 0.019
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPK 95
          K Y C+YC++++ ++  LK H K  H K
Sbjct: 1  KTYQCQYCEFRSADSSNLKTHIKTKHSK 28



 Score = 25.1 bits (54), Expect = 0.42
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
          K + C  CEF+  D+  LK H    H+ +K
Sbjct: 1  KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30


>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 27.3 bits (60), Expect = 0.055
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 67 QKPYPCRYCDYKARETQALKVHTKRY 92
          ++P+ C+ C Y +R +  L VH + +
Sbjct: 1  ERPFKCQICPYASRNSSQLTVHLRSH 26



 Score = 25.8 bits (56), Expect = 0.21
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
          E+PF C +C +  R++  L   H+  HTG
Sbjct: 1  ERPFKCQICPYASRNSSQLTV-HLRSHTG 28


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 35

 Score = 26.6 bits (59), Expect = 0.13
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 64 HTGQKPYPCRYCDYKARETQALKVHTK 90
           +G++P+ CR C            H K
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLK 28



 Score = 25.9 bits (57), Expect = 0.19
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
            G++PF C +C            H   +HT 
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHL-KVHTD 32


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 26.2 bits (58), Expect = 0.16
 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)

Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
          K F C  C  +   +  L  H    H  +K
Sbjct: 1  KKFACPECPKRFMRSDHLSKHI-KTHQNKK 29


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 25.6 bits (57), Expect = 0.19
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
          +KPF C +C      +  L  H    HTG
Sbjct: 1  QKPFQCRICMRNFSRSDHLTTHIR-THTG 28


>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 25.5 bits (55), Expect = 0.27
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 68 KPYPCRYCDYKARETQALKVHTK 90
          KPY C+ CDY A ++ +L  H +
Sbjct: 2  KPYKCKTCDYAAADSSSLNKHLR 24


>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 47

 Score = 25.7 bits (56), Expect = 0.29
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 22 TYNTGNIKRHLGMHLGEKPFTCNMCEF-KCRDNRTLKAHHINIHTGQK 68
          T   G+I +++   + +K F C      K    R     HI  H   +
Sbjct: 1  TLPRGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47


>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 25.1 bits (55), Expect = 0.42
 Identities = 4/15 (26%), Positives = 9/15 (60%)

Query: 60 HINIHTGQKPYPCRY 74
          H+ +H+  + Y C +
Sbjct: 22 HMKLHSDTRDYICEF 36



 Score = 22.4 bits (48), Expect = 5.1
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 11 YKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTC 43
          +     AC        ++K H+ +H   + + C
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 24.9 bits (55), Expect = 0.43
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
          + F C +C         LK H+   HT +K
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHY-RSHTNEK 29


>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 23.8 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 68 KPYPCRYCDYKARETQALKVHTKRYHPKM 96
          +P+ C YC +  ++   L  H K++H  M
Sbjct: 1  RPFKCNYCSFDTKQPSNLSKHMKKFHGDM 29


>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein
          1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 24.1 bits (52), Expect = 1.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 70 YPCRYCDYKARETQALKVHTKRYHP 94
          Y C  C++  +   AL  H  +YHP
Sbjct: 7  YVCVECNFLTKRYDALSEHNLKYHP 31



 Score = 23.7 bits (51), Expect = 2.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 13 YVCFACKFYTYNTGNIKRH-LGMHLGEKPFTCNMCEFKCRDNRT 55
          YVC  C F T     +  H L  H GE+ F   M +   R+N+T
Sbjct: 7  YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK---RNNQT 47


>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1,
          ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 22.8 bits (48), Expect = 3.0
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 67 QKPYPCRYCDYKARETQALKVHTKRYHP 94
          +  Y C+YC ++  +      H    HP
Sbjct: 8  EGGYECKYCTFQTPDLNMFTFHVDSEHP 35


>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 30

 Score = 22.8 bits (48), Expect = 3.3
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQ 67
          E+ FTC++C+   R    L+ H ++ HTG+
Sbjct: 2  EQVFTCSVCQETFRRRMELRLHMVS-HTGE 30


>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma
          cruzi [TaxId: 5693]}
          Length = 117

 Score = 23.6 bits (50), Expect = 5.2
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 16 FACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
          FA  F  Y   + +  L  + GE          +    + L A+ I I T + P
Sbjct: 35 FAGIFNAYKPKDGQVTL-CYRGEMILRGFDHTLREELTKQLTANGIQILTKENP 87


>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
          [TaxId: 7227]}
          Length = 54

 Score = 22.0 bits (46), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 36 LGEKPFTCNMCEFKCRDNRTLKAH 59
            E+P TC +C    R +R L+ H
Sbjct: 20 QSEQPATCPICYAVIRQSRNLRRH 43


>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 53

 Score = 21.9 bits (46), Expect = 8.9
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
          +K + C  C             H+++H G +PY C  C  K +    L  H K
Sbjct: 1  DKLYPCQ-CGKSFTHKSQRD-RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.479 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 427,201
Number of extensions: 18210
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 77
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)