RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7455
(400 letters)
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
benzoxazole, intersubunit allosteric inhibition of human
fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Length = 374
Score = 428 bits (1102), Expect = e-150
Identities = 184/384 (47%), Positives = 238/384 (61%), Gaps = 77/384 (20%)
Query: 1 MSSSNPIDTNCMTLTRFVLEQQKHIPNATGELTQLLVSIQTAVKAISSAVRKAGIAHLYG 60
M+ P DT+ TLTRFV+E+ + TGELTQLL S+ TAVKAISSAVRKAGIAHLYG
Sbjct: 37 MADQAPFDTDVNTLTRFVMEEGRK-ARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYG 95
Query: 61 IAGNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETA---------------- 104
IAG+ NV G++VKKLDVLSN+L +NML SS++TC+LVSEE++ A
Sbjct: 96 IAGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFD 155
Query: 105 -LERSSLQ----------LIIKKQTPGPVTPNDALQKGNEMVAGGYALYGSATMVVLSVG 153
L+ SS I +K++ + DALQ G +VA GYALYGSATM+VL++
Sbjct: 156 PLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMD 215
Query: 154 KGQGVHGFMLDPVEVSKQGKYIVCFDPLDGSSNIDCLVSIGSIFSIFRIQSCVFLTVKAI 213
G V+ FMLDP AI
Sbjct: 216 CG--VNCFMLDP----------------------------------------------AI 227
Query: 214 GEFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCPA-SGKPYGARYIGSMVA 272
GEF+L D ++++ +GKIYS+NEGY + PA+ EY+ KK P + PYGARY+GSMVA
Sbjct: 228 GEFILVDKDVKIKKKGKIYSLNEGYAKDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVA 287
Query: 273 DVHRTLKYGGIFMYPATQDAPKGKLRLLYEGNPMAYIVQEAGGLASNGEISILDVQPTSI 332
DVHRTL YGGIF+YPA + +P GKLRLLYE NPMAY++++AGG+A+ G+ ++LDV PT I
Sbjct: 288 DVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDI 347
Query: 333 HQRSPIFLGSKEDVEELLAAIGEF 356
HQR+P+ LGS +DV E L +
Sbjct: 348 HQRAPVILGSPDDVLEFLKVYEKH 371
Score = 66.2 bits (162), Expect = 3e-12
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 349 LLAAIGEFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCPASGN 400
L AIGEF+L D ++++ +GKIYS+NEGY + PA+ EY+ KK P +
Sbjct: 223 LDPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPAVTEYIQRKKFPPDNS 274
>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
Length = 337
Score = 424 bits (1093), Expect = e-149
Identities = 186/382 (48%), Positives = 237/382 (62%), Gaps = 77/382 (20%)
Query: 2 SSSNPIDTNCMTLTRFVLEQQKHIPNATGELTQLLVSIQTAVKAISSAVRKAGIAHLYGI 61
+ DTN +TLTRFV+E+ + TGE+TQLL S+ TAVKAIS+AVRKAGIAHLYGI
Sbjct: 1 TDQAAFDTNIVTLTRFVMEEGRK-ARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGI 59
Query: 62 AGNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETA----------------- 104
AG+ NV G++VKKLDVLSN+L +N+L SS++TC+LVSEE++ A
Sbjct: 60 AGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDP 119
Query: 105 LERSSLQ----------LIIKKQTPGPVTPNDALQKGNEMVAGGYALYGSATMVVLSVGK 154
L+ SS I +K + + DALQ G +VA GYALYGSATM+VL++
Sbjct: 120 LDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVN 179
Query: 155 GQGVHGFMLDPVEVSKQGKYIVCFDPLDGSSNIDCLVSIGSIFSIFRIQSCVFLTVKAIG 214
G V+ FMLDP AIG
Sbjct: 180 G--VNCFMLDP----------------------------------------------AIG 191
Query: 215 EFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCPA-SGKPYGARYIGSMVAD 273
EF+L D ++++ +G IYSINEGY + PAI EY+ KK P + PYGARY+GSMVAD
Sbjct: 192 EFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVAD 251
Query: 274 VHRTLKYGGIFMYPATQDAPKGKLRLLYEGNPMAYIVQEAGGLASNGEISILDVQPTSIH 333
VHRTL YGGIFMYPA + +PKGKLRLLYE NPMAY++++AGGLA+ G+ ++LD+ PT IH
Sbjct: 252 VHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIH 311
Query: 334 QRSPIFLGSKEDVEELLAAIGE 355
QR+PI LGS EDV ELL +
Sbjct: 312 QRAPIILGSPEDVTELLEIYQK 333
Score = 65.4 bits (160), Expect = 6e-12
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 349 LLAAIGEFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCPASGN 400
L AIGEF+L D ++++ +G IYSINEGY + PAI EY+ KK P +
Sbjct: 186 LDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNS 237
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
conformation, hydrolas; 1.45A {Escherichia coli} PDB:
2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Length = 332
Score = 411 bits (1058), Expect = e-144
Identities = 129/376 (34%), Positives = 185/376 (49%), Gaps = 79/376 (21%)
Query: 12 MTLTRFVLEQQKHIPNATGELTQLLVSIQTAVKAISSAVRKAGIAHLYGIAGNVNVQGEE 71
TL F++E+Q +ATGELT LL +I+ K I + KAG+ + G +G NVQGE
Sbjct: 2 KTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEV 61
Query: 72 VKKLDVLSNELFVNMLTSSYSTCLLVSEENETALERSSLQL------------------- 112
+KLD+ +NE L + + SEE + + +
Sbjct: 62 QQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVN 121
Query: 113 --------IIKKQTPG--PVTPNDALQKGNEMVAGGYALYGSATMVVLSVGKGQGVHGFM 162
I ++ TP PVT D LQ GN+ VA GY +YGS+TM+V + G G VH F
Sbjct: 122 VSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCG--VHAFT 179
Query: 163 LDPVEVSKQGKYIVCFDPLDGSSNIDCLVSIGSIFSIFRIQSCVFLTVKAIGEFVLSDYN 222
DP ++G F L
Sbjct: 180 YDP----------------------------------------------SLGVFCLCQER 193
Query: 223 IRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCP--ASGKPYGARYIGSMVADVHRTLKY 280
+R P +GK YSINEG + +++Y+ + ++ +PY +RYIGS+VAD HR L
Sbjct: 194 MRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLK 253
Query: 281 GGIFMYPATQDAPKGKLRLLYEGNPMAYIVQEAGGLASNGEISILDVQPTSIHQRSPIFL 340
GGI++YP+T P GKLRLLYE NPMA++ ++AGG AS+G+ ILD+ P ++HQR F+
Sbjct: 254 GGIYLYPSTASHPDGKLRLLYECNPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFV 313
Query: 341 GSKEDVEELLAAIGEF 356
G+ VE++ I EF
Sbjct: 314 GNDHMVEDVERFIREF 329
Score = 62.7 bits (153), Expect = 4e-11
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 349 LLAAIGEFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKK 394
++G F L +R P +GK YSINEG + +++Y+ +
Sbjct: 180 YDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQ 225
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 403 bits (1037), Expect = e-140
Identities = 140/398 (35%), Positives = 196/398 (49%), Gaps = 94/398 (23%)
Query: 2 SSSNPIDTNCMTLTRFVLEQQKHIPNATGELTQLLVSIQTAVKAISSAVRKAGIAHLYGI 61
+ +TLT ++L+Q++ ELT +L SI A K I+S V++A I++L G
Sbjct: 9 ETKKRSGYEIITLTSWLLQQEQK-GIIDAELTIVLSSISMACKQIASLVQRANISNLTGT 67
Query: 62 AGNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETA----------------- 104
G VN+QGE+ KKLDV+SNE+F N L SS T ++ SEE +
Sbjct: 68 QGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDP 127
Query: 105 LERSS---------------------------LQLIIKKQTPGPVTPNDALQKGNEMVAG 137
L+ SS T + Q G+ ++A
Sbjct: 128 LDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAA 187
Query: 138 GYALYGSATMVVLSVGKGQGVHGFMLDPVEVSKQGKYIVCFDPLDGSSNIDCLVSIGSIF 197
GY +Y S+ + VL++GKG V F LDP
Sbjct: 188 GYCMYSSSVIFVLTIGKG--VFVFTLDP-------------------------------- 213
Query: 198 SIFRIQSCVFLTVKAIGEFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCP- 256
GEFVL+ N+++P GKIYS NEG LW +++Y+D K P
Sbjct: 214 --------------LYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPG 259
Query: 257 ASGKPYGARYIGSMVADVHRTLKYGGIFMYPATQDAPKGKLRLLYEGNPMAYIVQEAGGL 316
SGKPY ARYIGS+V D HRTL YGGI+ YP + + GKLRLLYE PM++IV++AGG
Sbjct: 260 PSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGK 319
Query: 317 ASNGEISILDVQPTSIHQRSPIFLGSKEDVEELLAAIG 354
S+G +LD+QPT IHQR P+++GS E+VE++ +
Sbjct: 320 GSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 357
Score = 62.1 bits (151), Expect = 8e-11
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 349 LLAAIGEFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCP 396
L GEFVL+ N+++P GKIYS NEG LW +++Y+D K P
Sbjct: 211 LDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEP 258
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics,
center for structural genomics of infec diseases, csgid;
1.85A {Toxoplasma gondii}
Length = 347
Score = 357 bits (919), Expect = e-122
Identities = 85/382 (22%), Positives = 139/382 (36%), Gaps = 98/382 (25%)
Query: 12 MTLTRFVLEQQKHIPNATGELTQLLVSIQTAVKAISSAVRKAGIAHLYGIAGNVNVQGEE 71
+L + + EQ A LT L+++I I+SA++ + G+VN G+E
Sbjct: 25 PSLDQLLKEQG-----ADQTLTDLILAILDRCGKIASALQGTSV----DKVGSVNEFGDE 75
Query: 72 VKKLDVLSNELFVNMLTSSYSTCLLV--SEENETALER---------------SSLQLII 114
+DV++ L + SS + + SEE+ E SS II
Sbjct: 76 QLTVDVIAENLLRSWAQSSEGSAVRAVCSEEDIHLQECHKNGEFILCWDPLDGSS---II 132
Query: 115 ----------------KKQTPGPVTPNDALQKGNEMVAGGYALYGSATMVVLSVGKG--- 155
+ G + VA +YG T V++V
Sbjct: 133 DCNWAVGSIVSIWRIGHHGVQWQGADTLIQKTGRQQVASLIVVYGPRTTGVVAVNVDAGG 192
Query: 156 QGVHGFMLDPVEVSKQGKYIVCFDPLDGSSNIDCLVSIGSIFSIFRIQSCVFLTVKAIGE 215
G LD +K G+
Sbjct: 193 IVKEGTALDL-------------------------------------------EMKDNGK 209
Query: 216 FVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCPASGKPYGARYIGSMVADVH 275
F+ I P + KI+S + PA ++ ++ K Y RY G +V DV+
Sbjct: 210 FICRGKPIIKP-QAKIFSPANLRAAQDLPAYKQLIEFWM----EKRYTLRYTGGLVPDVY 264
Query: 276 RTL-KYGGIFMYPATQDAPKGKLRLLYEGNPMAYIVQEAGGLASNGEISILDVQPTSIHQ 334
+ K G+F PA++ AP KLR+ +E +A +V+ AGG SNG+ S+LDV +
Sbjct: 265 QIFVKQQGVFCNPASKAAP-AKLRMCFEVLAIALVVEAAGGRTSNGQKSLLDVAIEHMDH 323
Query: 335 RSPIFLGSKEDVEELLAAIGEF 356
RS + GS ++++ +
Sbjct: 324 RSALCCGSADEIKRMEETFAAL 345
Score = 55.0 bits (133), Expect = 1e-08
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 346 VEELLAAIGEFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKK 394
++ + G+F+ I P + KI+S + PA ++ ++
Sbjct: 200 LDLEMKDNGKFICRGKPIIKP-QAKIFSPANLRAAQDLPAYKQLIEFWM 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 2e-04
Identities = 50/303 (16%), Positives = 86/303 (28%), Gaps = 119/303 (39%)
Query: 117 QTPGPVTPNDALQKGNEMVAGGYALYGSATMVVLSV-----GKGQGVHGFML------DP 165
Q G M G LY ++ V + +GF + +P
Sbjct: 1627 QEQG-------------M---GMDLYKTSK-AAQDVWNRADNHFKDTYGFSILDIVINNP 1669
Query: 166 VEVS-----KQGKYI-VCFDPLDGSSNIDCLVSIGSIFS---------IFRI-------- 202
V ++ ++GK I + + + +D + IF FR
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 203 ---QSCVFLTVKAIGEFVLSDYNIRVPSR--GKIYSINEGYTSLWAPAIREYVDSKKCPA 257
Q + L KA E + S I + G +S+ E Y +L + A
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAG--HSLGE-YAALASLA------------ 1774
Query: 258 SGKPYGARYIGSM-VADVHRTLKYGGIFMYPATQDAPKGKLRLLYEGNPMAYIVQEAGGL 316
M + + + Y G+ M A P+ E G
Sbjct: 1775 ----------DVMSIESLVEVVFYRGMTMQVA---VPRD----------------ELGR- 1804
Query: 317 ASNGEISILDVQPTSIHQRSPIFLGSKED----VEELLAAIGEFV-LSDYNIRVPSRGKI 371
++ + P + S+E VE + G V + +YN +
Sbjct: 1805 ---SNYGMIAINPGRVAAS-----FSQEALQYVVERVGKRTGWLVEIVNYN----VENQQ 1852
Query: 372 YSI 374
Y
Sbjct: 1853 YVA 1855
Score = 35.8 bits (82), Expect = 0.026
Identities = 38/251 (15%), Positives = 72/251 (28%), Gaps = 91/251 (36%)
Query: 160 GFMLDPVEVSKQGKYIVCFDPLDGSSNIDCLVSIGSIFSIFRIQSCVFLTVKAIGEFVLS 219
G++ VE SK G++ L + F +L I
Sbjct: 66 GYVSSLVEPSKVGQF------------DQVL---NLCLTEFENC---YLEGNDIHALAAK 107
Query: 220 DYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCPASGKPYGARYIGSMVADVHRTLK 279
+ K + I+ Y+ + + +P+ + S
Sbjct: 108 LLQENDTTLVKTKEL-----------IKNYITA--RIMAKRPFD-KKSNS---------- 143
Query: 280 YGGIFMYPATQDAPKGKLRLLY-----EGNPMAYIVQEAGGLASNGEISILDVQPTSIHQ 334
+F + +G + L +GN Y +E L ++Q
Sbjct: 144 --ALF-----RAVGEGNAQ-LVAIFGGQGNTDDY-FEE---LR-------------DLYQ 178
Query: 335 RSPIFLGSKEDVEELLAAIGEFVLSDYNIRVPSRGKIYSINEGYTSL-W------APAIR 387
+ V +L+ E LS+ K+++ +G L W P +
Sbjct: 179 TYHVL------VGDLIKFSAE-TLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPD-K 228
Query: 388 EYVDSKKCPAS 398
+Y+ S P S
Sbjct: 229 DYLLS--IPIS 237
Score = 33.9 bits (77), Expect = 0.11
Identities = 36/213 (16%), Positives = 71/213 (33%), Gaps = 42/213 (19%)
Query: 19 LEQQKHIPNATGELTQLLVSIQTAVKAISS--AVRKAGIAHLYGIAGNVNVQGEEVKKLD 76
+ + PN + + L S++ S ++ + N K+++
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 77 V-LSN--ELFVNMLT----SSYSTCL-LVSEENETALERSSLQLIIKKQTPG----PVT- 123
+ L N + V ++ S Y L L + + L++S + +K PV
Sbjct: 368 ISLVNGAKNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 124 P------NDALQKGNEMVAGGYALYGSATMV--VLSVGKG---QGVHGFML--------- 163
P A N+ + + + + V G + + G +
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 164 DPV--EVSKQGK--YIVCFDPLDGSSNIDCLVS 192
PV E + Q K +I+ F P G+S + L
Sbjct: 486 LPVKWETTTQFKATHILDFGP-GGASGLGVLTH 517
Score = 30.0 bits (67), Expect = 1.6
Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 73/144 (50%)
Query: 12 MTLTRF--------------VLEQQKHIP-NAT------GELTQL-----LVSIQTAVK- 44
++ T+F L+ + IP +AT GE L ++SI++ V+
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 45 ------AISSAV-RKAGIAHLYGIAG---------------------------------N 64
+ AV R YG+ N
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 65 VNVQGE------EVKKLDVLSNEL 82
NV+ + +++ LD ++N L
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNVL 1869
Score = 30.0 bits (67), Expect = 2.0
Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 47/156 (30%)
Query: 30 GELTQLLVSIQTAVKAISSAVRKAGIAH------LYGIAGNVNVQGEEVKKLDVL----- 78
GEL L + + +A IA + K + VL
Sbjct: 261 GELRSYLKGATGHSQGLVTA---VAIAETDSWESFFVSV---------RKAITVLFFIGV 308
Query: 79 -SNELFVNMLTSSYSTCLLVSEENE----------TALERSSLQLIIKKQTPGPVTPNDA 127
E + N TS + L S EN + L + +Q + K N
Sbjct: 309 RCYEAYPN--TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-------NSH 359
Query: 128 LQKGNEMVAGGYALYGSATMVVLSVGKGQGVHGFML 163
L G ++ +L A +V+S G Q ++G L
Sbjct: 360 LPAGKQVEI---SLVNGAKNLVVS-GPPQSLYGLNL 391
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase
family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A
{Hypocrea jecorina} PDB: 2vn7_A*
Length = 599
Score = 35.2 bits (80), Expect = 0.036
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 169 SKQGKYIV-CFDPLDGSSNIDCLVSIGSIFSIFRIQSCVFLTVKAIGEFVLSDYNIRVPS 227
G Y+ + +G + D + SI + C T + + LS+ + V S
Sbjct: 229 VSSGGYVDSNINTNEGRTGKDVNSVLTSIHTFDPNLGCDAGTFQPCSDKALSNLKVVVDS 288
Query: 228 RGKIYSINEGYTSLWAPAIREYVDSKKCPASG 259
IY +N+G + A AI Y + +
Sbjct: 289 FRSIYGVNKGIPAGAAVAIGRYAEDVYYNGNP 320
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.55
Identities = 35/240 (14%), Positives = 63/240 (26%), Gaps = 76/240 (31%)
Query: 155 GQGVHGFMLDPVEVSKQG--KYIVCFDPLD------GSSNIDCLVSIGS-------IFSI 199
G+ + + D + V + C D D ID ++ +F
Sbjct: 12 GEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 200 FRIQSCVFLTVKAIGEFVLSDYNIRVPSRGKIYSINEGYTSLWAPAIREYVDSKKCPASG 259
+ + + +FV + Y L +P E P+
Sbjct: 71 LLSKQ-----EEMVQKFVEE-------------VLRINYKFLMSPIKTEQRQ----PSMM 108
Query: 260 KPYGARYIGSMVADVHRTLKYGGIFMYPATQDAPKGKLR-LLYEGNPMAYIVQEAGGLAS 318
+ D KY ++ P KLR L E P ++ + G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPAKNVLID--GVLG 160
Query: 319 NGEISILDVQPTSIHQRSPIFLGSKEDVEELLAAIGEFVLSDYNIRVPSRGKIYSINEGY 378
+G K +A V Y ++ KI+ +N
Sbjct: 161 SG----------------------KT----WVALD---VCLSYKVQCKMDFKIFWLNLKN 191
Score = 30.2 bits (67), Expect = 1.5
Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 47/191 (24%)
Query: 76 DVLSN--ELFVNMLTSSYSTCLLVSEENETALERSSLQLIIKKQTPGPVTPNDAL----- 128
D+LS + FV+ C V + ++ L + + II + V+ L
Sbjct: 20 DILSVFEDAFVDNFD-----CKDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLL 72
Query: 129 QKGNEMVAGGYALYGSATMVVLSVGKGQGVHGFMLDPVEVSKQGK------YIVCFDPL- 181
K EMV + + F++ P++ ++ YI D L
Sbjct: 73 SKQEEMV---QKFVEEVL---------RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 182 -DGSSNIDCLVSIGSIF-----SIFRIQSCVFLTV---KAIGEFVL-----SDYNIRVPS 227
D VS + ++ ++ + + G+ + Y ++
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 228 RGKIYSINEGY 238
KI+ +N
Sbjct: 181 DFKIFWLNLKN 191
>2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus
subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A
Length = 470
Score = 30.4 bits (68), Expect = 1.3
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 235 NEGYTSLWAPAIREYVDSKK---CPASGKPYGARYIGSMVAD 273
+LWA + + D K A +G VAD
Sbjct: 93 WAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVAD 134
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide
degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A
{Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A*
3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Length = 472
Score = 29.3 bits (65), Expect = 2.2
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 172 GKYIVCFDPLDGSSNIDCLVSIGSIFSIFRIQSCVFLTVKAIGEFVLSDYNIRVPSRGKI 231
G YI+ S D +GSI + C T + L+++ V S I
Sbjct: 229 GSYILAN-FDSSRSGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALANHKEVVDSFRSI 287
Query: 232 YSINEGYTSLWAPAIREY 249
Y++N+G + A A+ Y
Sbjct: 288 YTLNDGLSDSEAVAVGRY 305
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 28.7 bits (65), Expect = 3.4
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 309 IVQEAGGLASNGEISILDVQPTSIHQRSPIFLGSKEDVEELLAAIGE 355
+ + LD + + +P + +K E +L +
Sbjct: 224 FAELLNLKMTT-----LDGKAIDHLKGAPFIISNKACHETVLKILNA 265
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 27.9 bits (63), Expect = 6.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 91 YSTCLLVSEENET----ALERSSLQLI-IKKQTPGPVTPNDA 127
YSTC L EENE AL+ ++L+ +K P P
Sbjct: 244 YSTCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGI 285
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; 1.30A {Pyrococcus
horikoshii} SCOP: e.7.1.1
Length = 254
Score = 27.6 bits (62), Expect = 7.4
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 309 IVQEAGGLASNGEISILDVQPTSIHQRSPIFLGSKEDVEELLAAIGE 355
I +EAG + + + +++ ++ + + I ++E +E +L +I +
Sbjct: 208 IAREAGAIVKDLDGKDVEITFSATEKVNIIAANNEELLETILRSIEK 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 9.2
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 10/27 (37%)
Query: 233 SIN--EGYTSLWAPAIREYVDSKKCPA 257
++ + L+A DS PA
Sbjct: 21 ALKKLQASLKLYAD------DS--APA 39
Score = 26.8 bits (58), Expect = 9.2
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 10/27 (37%)
Query: 373 SIN--EGYTSLWAPAIREYVDSKKCPA 397
++ + L+A DS PA
Sbjct: 21 ALKKLQASLKLYAD------DS--APA 39
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme,
oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB:
2cwf_A* 2cwh_A*
Length = 343
Score = 27.3 bits (61), Expect = 9.4
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 121 PVT-PNDALQKGNEMVAGGYALYGSATMV-----VLSVGK-GQGVHGFMLDPVEVSKQGK 173
P P L G + GG+ + MV L+ G + G+
Sbjct: 217 PTQEPRAILDGGALLPFGGHKGSALSMMVELLAAGLTGGNFSFEFDWSKHPGAQTPWTGQ 276
Query: 174 YIVCFDP 180
++ DP
Sbjct: 277 LLIVIDP 283
>3t0j_A Impase II, inositol monophosphatase family protein; FIG
superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus
aureus}
Length = 283
Score = 27.2 bits (61), Expect = 9.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 309 IVQEAGGLASNGEISILDVQPTSIHQRSPIFLGSKEDVEELLAAIGE 355
I+ E G ASN L +P +I + I +G++ +E+ E
Sbjct: 223 ILYEVNGQASN-----LLGEPLTISGPNSILVGNRGLHQEISNDYLE 264
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.385
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,899,874
Number of extensions: 358327
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 45
Length of query: 400
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,021,377
Effective search space: 1222498608
Effective search space used: 1222498608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)