Query psy7457
Match_columns 497
No_of_seqs 238 out of 805
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:48:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2076|consensus 100.0 6.5E-50 1.4E-54 438.9 21.5 394 10-462 206-780 (895)
2 KOG1458|consensus 99.6 6.2E-16 1.4E-20 154.6 6.6 93 402-496 17-129 (343)
3 COG0158 Fbp Fructose-1,6-bisph 99.6 2.3E-15 5E-20 151.6 6.4 89 405-496 1-109 (326)
4 PF00316 FBPase: Fructose-1-6- 99.5 8.5E-15 1.8E-19 150.5 4.7 88 406-496 1-108 (324)
5 PLN02542 fructose-1,6-bisphosp 99.4 1.7E-13 3.7E-18 144.2 8.2 96 398-496 69-184 (412)
6 PLN02262 fructose-1,6-bisphosp 99.2 1.1E-11 2.3E-16 128.5 7.4 90 405-496 12-121 (340)
7 PLN02628 fructose-1,6-bisphosp 99.2 1.4E-11 3E-16 127.8 7.5 59 434-496 67-125 (351)
8 PRK11788 tetratricopeptide rep 99.2 4.9E-10 1.1E-14 114.7 17.2 277 29-400 48-326 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.2 5.1E-09 1.1E-13 114.9 25.8 110 49-168 485-594 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.1 7.2E-09 1.6E-13 113.7 22.8 222 51-318 453-685 (899)
11 TIGR02521 type_IV_pilW type IV 99.0 3.9E-08 8.4E-13 90.3 19.2 189 61-317 29-218 (234)
12 PRK15174 Vi polysaccharide exp 99.0 5.1E-08 1.1E-12 109.3 22.4 267 9-317 74-367 (656)
13 PRK11788 tetratricopeptide rep 99.0 8.2E-08 1.8E-12 98.4 21.3 96 65-168 109-207 (389)
14 PLN02462 sedoheptulose-1,7-bis 99.0 7.4E-10 1.6E-14 113.4 6.2 63 432-496 37-99 (304)
15 TIGR00990 3a0801s09 mitochondr 98.9 2.1E-08 4.7E-13 110.7 17.3 145 47-233 349-493 (615)
16 PRK11447 cellulose synthase su 98.9 5.8E-08 1.3E-12 115.0 21.8 236 29-316 364-651 (1157)
17 TIGR02521 type_IV_pilW type IV 98.9 6.8E-08 1.5E-12 88.7 17.1 201 10-295 30-231 (234)
18 TIGR00990 3a0801s09 mitochondr 98.9 3.7E-08 8E-13 108.8 17.4 186 50-298 386-573 (615)
19 PRK11189 lipoprotein NlpI; Pro 98.9 1.5E-07 3.2E-12 95.4 19.0 186 52-310 87-279 (296)
20 PRK12370 invasion protein regu 98.9 1.1E-07 2.4E-12 104.4 18.7 200 48-316 280-489 (553)
21 PF13429 TPR_15: Tetratricopep 98.8 1.2E-08 2.7E-13 101.3 10.2 239 23-318 15-264 (280)
22 PRK15174 Vi polysaccharide exp 98.8 2.5E-07 5.5E-12 103.7 21.7 252 47-319 60-335 (656)
23 PRK11447 cellulose synthase su 98.8 1.7E-07 3.8E-12 111.0 19.8 225 67-319 355-620 (1157)
24 PRK09293 fructose-1,6-bisphosp 98.7 1.2E-08 2.6E-13 105.7 6.6 89 405-496 2-110 (327)
25 PRK12370 invasion protein regu 98.7 6.1E-07 1.3E-11 98.6 16.7 182 47-298 322-504 (553)
26 PRK09782 bacteriophage N4 rece 98.6 8.8E-07 1.9E-11 103.6 18.7 215 10-319 476-694 (987)
27 PRK10049 pgaA outer membrane p 98.5 2.5E-05 5.5E-10 89.2 26.1 110 206-316 271-407 (765)
28 cd00354 FBPase Fructose-1,6-bi 98.5 1.3E-07 2.8E-12 97.7 5.8 64 431-496 39-102 (315)
29 TIGR03302 OM_YfiO outer membra 98.5 8.6E-06 1.9E-10 78.4 18.0 178 59-296 29-232 (235)
30 PRK09782 bacteriophage N4 rece 98.5 3.6E-06 7.8E-11 98.6 18.1 191 52-314 532-723 (987)
31 PRK15359 type III secretion sy 98.5 1.2E-06 2.6E-11 79.9 11.1 124 1-142 2-129 (144)
32 PF13429 TPR_15: Tetratricopep 98.5 9.9E-08 2.2E-12 94.8 3.9 206 65-316 10-228 (280)
33 PRK10747 putative protoheme IX 98.4 1.5E-05 3.2E-10 84.2 18.8 215 56-317 145-376 (398)
34 KOG4626|consensus 98.4 7.2E-06 1.6E-10 90.1 15.0 229 11-314 252-502 (966)
35 TIGR02552 LcrH_SycD type III s 98.4 5.5E-06 1.2E-10 72.7 11.6 107 53-169 7-113 (135)
36 PRK10049 pgaA outer membrane p 98.3 5.1E-05 1.1E-09 86.7 22.4 108 51-169 37-144 (765)
37 TIGR03302 OM_YfiO outer membra 98.3 1.1E-05 2.4E-10 77.6 14.5 176 6-233 28-229 (235)
38 PRK14720 transcript cleavage f 98.3 2.1E-05 4.6E-10 90.8 17.1 158 59-314 112-269 (906)
39 COG3063 PilF Tfp pilus assembl 98.2 8.9E-05 1.9E-09 73.6 17.9 178 63-307 35-213 (250)
40 PRK15359 type III secretion sy 98.2 1.1E-05 2.4E-10 73.6 10.9 108 49-169 13-120 (144)
41 KOG4626|consensus 98.2 3.4E-05 7.3E-10 85.0 15.3 195 53-316 242-436 (966)
42 TIGR00540 hemY_coli hemY prote 98.2 8E-05 1.7E-09 78.8 17.3 244 22-317 124-385 (409)
43 PRK11189 lipoprotein NlpI; Pro 98.2 0.00012 2.6E-09 74.4 17.8 103 57-169 58-160 (296)
44 PLN03218 maturation of RBCL 1; 98.1 0.00046 9.9E-09 81.8 24.8 95 63-167 472-568 (1060)
45 TIGR00540 hemY_coli hemY prote 98.1 7.2E-05 1.6E-09 79.1 16.6 189 52-301 107-297 (409)
46 COG2956 Predicted N-acetylgluc 98.1 0.00015 3.4E-09 74.9 16.6 248 4-342 29-276 (389)
47 KOG1840|consensus 98.0 0.00011 2.4E-09 80.6 15.4 263 53-379 189-473 (508)
48 cd00189 TPR Tetratricopeptide 98.0 6.7E-05 1.4E-09 57.5 10.1 94 65-168 2-95 (100)
49 PLN03218 maturation of RBCL 1; 98.0 0.00062 1.3E-08 80.7 22.6 265 39-319 416-701 (1060)
50 PRK10370 formate-dependent nit 98.0 7.6E-05 1.6E-09 71.9 12.5 110 50-169 60-172 (198)
51 cd05804 StaR_like StaR_like; a 98.0 0.00039 8.5E-09 70.5 17.9 196 58-319 1-203 (355)
52 PRK14574 hmsH outer membrane p 98.0 0.0004 8.7E-09 80.3 19.5 210 55-315 26-250 (822)
53 PRK15179 Vi polysaccharide bio 97.9 0.00048 1.1E-08 78.3 18.9 203 50-319 31-243 (694)
54 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00018 3.9E-09 60.7 11.9 102 63-169 2-104 (119)
55 PLN03081 pentatricopeptide (PP 97.9 0.00071 1.5E-08 76.2 19.6 185 62-315 188-404 (697)
56 PRK14574 hmsH outer membrane p 97.9 0.0016 3.5E-08 75.4 22.4 120 37-169 76-197 (822)
57 KOG1155|consensus 97.9 0.0008 1.7E-08 72.4 18.1 99 40-148 205-303 (559)
58 PRK10370 formate-dependent nit 97.8 0.00012 2.5E-09 70.6 10.5 107 8-140 70-179 (198)
59 cd05804 StaR_like StaR_like; a 97.8 0.00049 1.1E-08 69.8 14.1 108 53-168 104-213 (355)
60 PF13525 YfiO: Outer membrane 97.8 0.0021 4.6E-08 61.8 17.6 175 62-316 4-192 (203)
61 PF14938 SNAP: Soluble NSF att 97.7 0.00013 2.9E-09 73.5 9.1 215 21-298 37-268 (282)
62 KOG1840|consensus 97.7 0.00049 1.1E-08 75.5 13.5 221 21-296 246-479 (508)
63 PF13432 TPR_16: Tetratricopep 97.7 0.0001 2.3E-09 57.3 6.1 63 67-137 1-63 (65)
64 KOG2002|consensus 97.7 0.0017 3.8E-08 74.7 17.6 251 7-296 245-525 (1018)
65 TIGR02552 LcrH_SycD type III s 97.6 0.00038 8.3E-09 61.0 9.4 80 53-140 41-120 (135)
66 PRK10747 putative protoheme IX 97.6 0.0025 5.4E-08 67.4 16.6 180 64-311 119-305 (398)
67 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0004 8.7E-09 58.6 8.5 108 11-138 2-109 (119)
68 cd00189 TPR Tetratricopeptide 97.6 0.00044 9.6E-09 52.9 8.1 77 53-137 24-100 (100)
69 PLN03081 pentatricopeptide (PP 97.6 0.011 2.3E-07 66.9 22.3 97 62-166 289-385 (697)
70 KOG2002|consensus 97.5 0.00035 7.6E-09 80.2 9.7 146 10-169 599-744 (1018)
71 PRK10866 outer membrane biogen 97.5 0.0041 8.9E-08 62.0 16.2 77 61-142 30-106 (243)
72 PRK02603 photosystem I assembl 97.5 0.0022 4.7E-08 59.7 12.9 93 57-156 29-121 (172)
73 PF13414 TPR_11: TPR repeat; P 97.4 0.00039 8.5E-09 54.4 6.5 67 62-136 2-69 (69)
74 PLN03077 Protein ECB2; Provisi 97.4 0.017 3.7E-07 66.7 21.8 90 70-167 260-349 (857)
75 PLN03088 SGT1, suppressor of 97.3 0.00046 9.9E-09 72.3 7.4 89 29-138 15-103 (356)
76 PF12895 Apc3: Anaphase-promot 97.3 0.00055 1.2E-08 56.2 6.2 82 76-166 2-83 (84)
77 PLN03077 Protein ECB2; Provisi 97.3 0.011 2.3E-07 68.4 18.8 205 39-314 434-669 (857)
78 COG4783 Putative Zn-dependent 97.3 0.016 3.4E-07 62.9 18.5 168 57-310 300-467 (484)
79 PRK15179 Vi polysaccharide bio 97.3 0.0018 3.8E-08 73.8 12.0 112 47-168 104-215 (694)
80 KOG1126|consensus 97.3 0.0018 3.8E-08 72.0 11.4 177 8-233 418-617 (638)
81 PF12688 TPR_5: Tetratrico pep 97.1 0.0085 1.8E-07 53.9 12.4 98 64-166 2-100 (120)
82 KOG2076|consensus 97.1 0.022 4.7E-07 65.5 17.5 112 48-169 158-269 (895)
83 PRK15363 pathogenicity island 97.0 0.006 1.3E-07 57.5 10.8 90 47-144 53-142 (157)
84 PF13414 TPR_11: TPR repeat; P 97.0 0.00044 9.6E-09 54.1 2.5 68 9-97 1-69 (69)
85 KOG0624|consensus 97.0 0.012 2.7E-07 61.8 13.6 181 58-303 184-377 (504)
86 PF14559 TPR_19: Tetratricopep 97.0 0.00082 1.8E-08 52.3 3.9 57 74-138 2-58 (68)
87 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.0071 1.5E-07 64.7 11.9 130 59-233 163-294 (395)
88 PF12895 Apc3: Anaphase-promot 96.9 0.00025 5.4E-09 58.2 0.5 80 30-131 3-84 (84)
89 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.0076 1.6E-07 64.5 11.8 104 51-168 191-295 (395)
90 PF13424 TPR_12: Tetratricopep 96.9 0.0023 5.1E-08 51.3 6.1 70 62-134 4-75 (78)
91 PRK10803 tol-pal system protei 96.9 0.014 3E-07 59.1 12.6 103 62-169 141-245 (263)
92 PF09976 TPR_21: Tetratricopep 96.9 0.018 3.9E-07 52.1 12.2 126 67-230 15-141 (145)
93 PLN03088 SGT1, suppressor of 96.9 0.0094 2E-07 62.5 11.7 94 66-169 5-98 (356)
94 PF09976 TPR_21: Tetratricopep 96.8 0.014 3E-07 52.9 11.1 95 63-166 48-143 (145)
95 PF14938 SNAP: Soluble NSF att 96.8 0.023 5E-07 57.4 13.8 182 63-300 35-230 (282)
96 KOG3060|consensus 96.8 0.012 2.6E-07 59.6 11.4 92 58-159 115-206 (289)
97 PF13371 TPR_9: Tetratricopept 96.8 0.0049 1.1E-07 48.6 6.8 61 70-138 2-62 (73)
98 KOG0553|consensus 96.8 0.0019 4.2E-08 66.2 5.3 104 29-169 94-197 (304)
99 CHL00033 ycf3 photosystem I as 96.8 0.019 4.1E-07 53.0 11.5 102 61-169 33-141 (168)
100 KOG1129|consensus 96.7 0.013 2.8E-07 61.3 11.1 191 64-300 222-428 (478)
101 KOG0624|consensus 96.7 0.047 1E-06 57.5 15.2 77 55-139 64-140 (504)
102 KOG1125|consensus 96.7 0.027 5.9E-07 62.1 13.9 197 49-297 305-528 (579)
103 KOG0547|consensus 96.6 0.019 4.2E-07 62.5 12.0 106 53-168 384-489 (606)
104 COG2956 Predicted N-acetylgluc 96.6 0.0071 1.5E-07 63.0 8.3 104 53-166 204-307 (389)
105 KOG4162|consensus 96.6 0.086 1.9E-06 60.0 17.2 290 20-339 441-762 (799)
106 KOG2003|consensus 96.6 0.0066 1.4E-07 65.5 8.0 118 29-169 571-688 (840)
107 PRK10866 outer membrane biogen 96.6 0.034 7.4E-07 55.4 12.6 141 14-167 67-238 (243)
108 KOG1155|consensus 96.6 0.015 3.3E-07 62.9 10.6 153 29-230 377-530 (559)
109 PRK10803 tol-pal system protei 96.4 0.015 3.2E-07 58.9 9.2 105 11-138 142-250 (263)
110 PF13432 TPR_16: Tetratricopep 96.4 0.0083 1.8E-07 46.5 5.5 58 110-169 2-59 (65)
111 KOG1915|consensus 96.3 0.18 3.9E-06 55.1 16.9 219 12-311 323-549 (677)
112 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.017 3.7E-07 62.5 9.1 78 57-139 69-146 (453)
113 PRK15363 pathogenicity island 96.2 0.042 9.1E-07 51.9 10.5 101 60-170 32-132 (157)
114 KOG1129|consensus 96.2 0.069 1.5E-06 56.0 12.8 139 109-312 227-368 (478)
115 PRK02603 photosystem I assembl 96.1 0.027 5.9E-07 52.3 8.4 53 62-122 71-123 (172)
116 PF12569 NARP1: NMDA receptor- 96.1 0.11 2.4E-06 57.5 14.4 144 101-296 190-334 (517)
117 PF12688 TPR_5: Tetratrico pep 96.1 0.027 5.8E-07 50.7 7.9 105 11-135 1-105 (120)
118 PF03704 BTAD: Bacterial trans 96.0 0.18 4E-06 45.2 12.9 103 63-170 6-125 (146)
119 COG3063 PilF Tfp pilus assembl 96.0 0.056 1.2E-06 54.1 10.3 107 52-169 58-167 (250)
120 KOG1156|consensus 95.9 0.062 1.4E-06 60.2 11.3 157 33-242 92-255 (700)
121 PF14559 TPR_19: Tetratricopep 95.9 0.024 5.2E-07 44.0 6.0 52 116-169 2-53 (68)
122 KOG2003|consensus 95.9 0.028 6E-07 60.8 8.2 150 29-233 537-686 (840)
123 COG5010 TadD Flp pilus assembl 95.9 0.091 2E-06 53.2 11.3 105 52-166 89-193 (257)
124 PF13371 TPR_9: Tetratricopept 95.8 0.0072 1.6E-07 47.6 2.7 56 29-100 8-63 (73)
125 KOG1126|consensus 95.8 0.073 1.6E-06 59.6 11.3 30 269-298 593-622 (638)
126 PF13424 TPR_12: Tetratricopep 95.8 0.054 1.2E-06 43.3 7.8 67 103-169 3-74 (78)
127 KOG0543|consensus 95.7 0.029 6.3E-07 59.7 7.4 92 38-137 266-358 (397)
128 CHL00033 ycf3 photosystem I as 95.6 0.055 1.2E-06 49.9 8.3 87 30-135 49-143 (168)
129 COG4783 Putative Zn-dependent 95.6 0.19 4.2E-06 54.7 13.2 117 45-169 322-453 (484)
130 PRK14720 transcript cleavage f 95.4 0.39 8.5E-06 56.4 16.0 138 6-169 26-177 (906)
131 KOG3060|consensus 95.4 2.2 4.8E-05 43.6 19.2 183 73-319 20-205 (289)
132 KOG1173|consensus 95.3 0.41 8.8E-06 53.2 14.8 237 61-319 242-506 (611)
133 KOG1127|consensus 95.2 1.1 2.5E-05 52.7 18.4 307 48-412 477-838 (1238)
134 KOG2376|consensus 95.0 6.7 0.00014 44.2 23.0 132 28-165 76-248 (652)
135 PF04733 Coatomer_E: Coatomer 95.0 0.26 5.6E-06 50.6 11.7 135 59-237 127-267 (290)
136 COG4700 Uncharacterized protei 94.9 0.24 5.1E-06 48.7 10.4 134 53-227 80-213 (251)
137 KOG1174|consensus 94.9 0.21 4.5E-06 53.9 10.9 108 53-168 324-465 (564)
138 PF12569 NARP1: NMDA receptor- 94.9 0.18 3.8E-06 56.0 10.7 130 19-169 197-333 (517)
139 KOG1156|consensus 94.8 0.6 1.3E-05 52.7 14.4 229 15-313 27-264 (700)
140 KOG3785|consensus 94.8 0.58 1.3E-05 49.8 13.5 315 23-381 109-486 (557)
141 COG3071 HemY Uncharacterized e 94.6 3.5 7.6E-05 44.3 19.0 78 49-134 138-216 (400)
142 KOG0495|consensus 94.6 1.9 4E-05 49.2 17.5 187 58-316 545-733 (913)
143 PRK10153 DNA-binding transcrip 94.6 0.27 5.8E-06 54.5 11.3 112 51-169 364-481 (517)
144 KOG1174|consensus 94.6 1.3 2.7E-05 48.1 15.5 201 59-304 93-337 (564)
145 PF13512 TPR_18: Tetratricopep 94.5 0.18 3.8E-06 47.0 8.2 79 237-316 5-98 (142)
146 PF05843 Suf: Suppressor of fo 94.5 0.17 3.6E-06 51.4 8.8 132 12-169 2-135 (280)
147 COG4785 NlpI Lipoprotein NlpI, 94.3 0.41 8.8E-06 48.0 10.5 210 48-303 50-273 (297)
148 COG5010 TadD Flp pilus assembl 94.2 0.76 1.6E-05 46.7 12.5 100 58-168 62-161 (257)
149 COG1729 Uncharacterized protei 94.1 0.26 5.6E-06 50.2 9.0 97 108-233 144-241 (262)
150 PF04733 Coatomer_E: Coatomer 94.1 0.22 4.8E-06 51.1 8.7 140 109-316 106-249 (290)
151 PF13428 TPR_14: Tetratricopep 94.0 0.098 2.1E-06 38.1 4.4 41 270-311 4-44 (44)
152 KOG0548|consensus 93.8 0.78 1.7E-05 50.7 12.6 184 58-316 253-440 (539)
153 PLN02789 farnesyltranstransfer 93.6 0.52 1.1E-05 49.1 10.5 106 53-169 61-170 (320)
154 PRK04841 transcriptional regul 93.6 2.4 5.2E-05 49.0 16.8 228 27-311 542-776 (903)
155 PF13428 TPR_14: Tetratricopep 93.4 0.13 2.8E-06 37.4 4.0 42 64-113 2-43 (44)
156 PF13512 TPR_18: Tetratricopep 93.3 0.5 1.1E-05 44.0 8.7 71 63-138 10-80 (142)
157 KOG1070|consensus 93.3 1.7 3.6E-05 53.0 14.7 217 75-414 1436-1658(1710)
158 PLN02789 farnesyltranstransfer 92.9 0.35 7.5E-06 50.4 7.9 90 48-145 91-183 (320)
159 PRK04841 transcriptional regul 92.9 3.2 6.9E-05 48.0 16.4 183 63-295 452-640 (903)
160 PF13174 TPR_6: Tetratricopept 92.8 0.16 3.4E-06 33.7 3.5 33 64-99 1-33 (33)
161 PF13525 YfiO: Outer membrane 92.8 0.35 7.5E-06 46.6 7.2 132 14-158 40-195 (203)
162 PF10602 RPN7: 26S proteasome 92.7 1.5 3.3E-05 41.8 11.4 100 63-167 36-139 (177)
163 PF13174 TPR_6: Tetratricopept 92.6 0.23 4.9E-06 32.9 4.1 32 107-138 2-33 (33)
164 KOG4162|consensus 92.4 1.5 3.2E-05 50.4 12.4 127 20-169 654-782 (799)
165 COG4235 Cytochrome c biogenesi 92.4 1.7 3.6E-05 44.9 11.8 107 53-169 146-255 (287)
166 KOG1125|consensus 92.1 2.7 5.9E-05 46.9 13.8 95 63-167 285-379 (579)
167 PF07719 TPR_2: Tetratricopept 91.8 0.46 1E-05 31.7 4.9 32 106-137 2-33 (34)
168 PF13431 TPR_17: Tetratricopep 91.6 0.11 2.4E-06 36.3 1.6 32 52-85 2-33 (34)
169 KOG1915|consensus 91.4 7.5 0.00016 43.1 15.8 190 56-308 315-513 (677)
170 KOG1127|consensus 91.4 2.9 6.4E-05 49.5 13.4 198 56-314 877-1087(1238)
171 KOG0543|consensus 91.3 2.3 5E-05 45.7 11.8 129 107-316 210-339 (397)
172 PF03704 BTAD: Bacterial trans 91.2 0.81 1.7E-05 41.0 7.3 67 62-136 61-127 (146)
173 PF07719 TPR_2: Tetratricopept 91.2 0.36 7.8E-06 32.3 3.8 33 64-99 2-34 (34)
174 KOG3785|consensus 91.0 2.6 5.6E-05 45.1 11.6 44 271-316 155-199 (557)
175 KOG1173|consensus 90.9 1.1 2.5E-05 49.8 9.3 116 48-168 399-516 (611)
176 PF00515 TPR_1: Tetratricopept 90.9 0.29 6.2E-06 33.1 3.2 32 64-98 2-33 (34)
177 KOG0495|consensus 90.7 4.2 9.1E-05 46.4 13.4 86 214-303 760-853 (913)
178 KOG0553|consensus 90.3 1.4 3E-05 45.8 8.7 85 74-168 92-176 (304)
179 PF13176 TPR_7: Tetratricopept 90.1 0.56 1.2E-05 32.8 4.2 26 108-133 2-27 (36)
180 KOG1538|consensus 89.7 5 0.00011 45.8 13.0 35 269-303 819-857 (1081)
181 PRK15331 chaperone protein Sic 89.5 0.96 2.1E-05 43.2 6.4 68 58-133 66-133 (165)
182 KOG4642|consensus 89.1 0.91 2E-05 46.0 6.2 83 32-135 26-108 (284)
183 PF13374 TPR_10: Tetratricopep 89.1 0.85 1.8E-05 31.5 4.5 38 106-143 3-40 (42)
184 PF11817 Foie-gras_1: Foie gra 88.8 1.7 3.7E-05 43.4 8.0 62 258-319 161-235 (247)
185 COG0457 NrfG FOG: TPR repeat [ 88.5 12 0.00027 31.8 12.3 67 64-137 168-234 (291)
186 KOG4234|consensus 88.0 0.84 1.8E-05 45.4 5.1 46 52-100 157-202 (271)
187 PF00515 TPR_1: Tetratricopept 87.8 1.4 3E-05 29.7 4.7 31 107-137 3-33 (34)
188 PF13181 TPR_8: Tetratricopept 87.3 1.5 3.2E-05 29.4 4.6 30 107-136 3-32 (34)
189 COG3118 Thioredoxin domain-con 87.0 19 0.00041 37.6 14.3 150 107-316 136-286 (304)
190 PRK15331 chaperone protein Sic 86.9 5.7 0.00012 38.0 9.8 99 60-168 34-132 (165)
191 PLN03098 LPA1 LOW PSII ACCUMUL 86.9 2.3 5E-05 46.5 8.1 64 106-169 76-140 (453)
192 KOG0547|consensus 86.9 4.8 0.0001 44.6 10.4 77 53-137 418-494 (606)
193 KOG0550|consensus 86.7 2.6 5.7E-05 45.7 8.3 106 29-154 262-367 (486)
194 COG1729 Uncharacterized protei 86.7 8.1 0.00018 39.5 11.4 100 64-168 142-242 (262)
195 KOG0548|consensus 86.7 1.3 2.8E-05 49.0 6.1 79 52-138 381-459 (539)
196 PF13431 TPR_17: Tetratricopep 86.7 0.8 1.7E-05 32.0 3.0 34 87-126 1-34 (34)
197 KOG3617|consensus 85.7 29 0.00063 41.1 16.0 139 22-166 973-1170(1416)
198 KOG2047|consensus 85.3 4.7 0.0001 46.0 9.5 109 57-169 343-453 (835)
199 PF14561 TPR_20: Tetratricopep 84.7 4.6 0.0001 34.4 7.4 45 52-99 11-55 (90)
200 PF11207 DUF2989: Protein of u 84.7 6.5 0.00014 38.8 9.3 90 58-162 108-199 (203)
201 COG0457 NrfG FOG: TPR repeat [ 84.6 24 0.00052 30.0 16.1 176 58-299 90-268 (291)
202 KOG2376|consensus 83.7 12 0.00027 42.2 11.9 148 58-238 337-490 (652)
203 COG5159 RPN6 26S proteasome re 83.5 24 0.00053 37.0 13.1 157 110-319 8-182 (421)
204 TIGR03504 FimV_Cterm FimV C-te 83.5 1.1 2.4E-05 33.6 2.7 25 110-134 4-28 (44)
205 smart00028 TPR Tetratricopepti 83.5 1.9 4.2E-05 26.1 3.6 32 64-98 2-33 (34)
206 KOG1128|consensus 83.4 5.3 0.00011 45.9 9.0 80 77-166 499-578 (777)
207 KOG1585|consensus 83.0 12 0.00026 38.4 10.5 185 65-303 33-226 (308)
208 COG4105 ComL DNA uptake lipopr 82.8 60 0.0013 33.2 18.8 74 62-140 33-106 (254)
209 PF13181 TPR_8: Tetratricopept 81.2 2.1 4.5E-05 28.7 3.2 31 64-97 2-32 (34)
210 PF05843 Suf: Suppressor of fo 81.0 16 0.00034 37.1 10.9 89 71-169 9-98 (280)
211 smart00028 TPR Tetratricopepti 80.9 3.1 6.8E-05 25.2 3.8 31 107-137 3-33 (34)
212 KOG1586|consensus 80.6 18 0.00038 37.0 10.7 90 78-172 88-185 (288)
213 PF13176 TPR_7: Tetratricopept 79.4 3 6.6E-05 29.0 3.6 24 271-294 3-26 (36)
214 TIGR03504 FimV_Cterm FimV C-te 78.5 2.3 5E-05 31.9 2.9 29 271-299 3-31 (44)
215 PF08424 NRDE-2: NRDE-2, neces 78.2 31 0.00068 35.7 12.3 83 51-139 7-99 (321)
216 PF10602 RPN7: 26S proteasome 78.1 8.6 0.00019 36.6 7.4 68 102-169 33-101 (177)
217 PF14561 TPR_20: Tetratricopep 78.1 8.6 0.00019 32.8 6.7 68 83-156 6-73 (90)
218 COG4700 Uncharacterized protei 78.0 19 0.00041 35.8 9.7 89 61-159 122-211 (251)
219 PRK10153 DNA-binding transcrip 77.5 10 0.00022 42.2 8.9 71 59-138 416-486 (517)
220 KOG0551|consensus 77.4 2.5 5.3E-05 44.8 3.7 88 30-134 95-182 (390)
221 KOG2610|consensus 76.0 54 0.0012 35.3 13.0 194 67-324 107-314 (491)
222 PF12862 Apc5: Anaphase-promot 76.0 6.5 0.00014 33.3 5.4 56 115-171 8-71 (94)
223 KOG4555|consensus 75.8 5.9 0.00013 37.2 5.3 88 20-138 23-110 (175)
224 KOG2053|consensus 75.5 1.1E+02 0.0024 36.4 16.4 100 58-165 38-138 (932)
225 COG3071 HemY Uncharacterized e 75.4 1.3E+02 0.0028 32.8 16.8 112 47-169 102-215 (400)
226 COG4235 Cytochrome c biogenesi 75.3 16 0.00034 38.0 8.9 85 53-143 180-265 (287)
227 KOG1070|consensus 75.0 47 0.001 41.3 13.6 202 56-296 1451-1663(1710)
228 KOG1464|consensus 74.4 28 0.00061 36.4 10.3 87 78-168 42-139 (440)
229 KOG0550|consensus 72.6 22 0.00047 38.9 9.4 107 53-169 73-197 (486)
230 KOG2047|consensus 71.5 55 0.0012 37.8 12.4 93 65-169 104-197 (835)
231 PF09986 DUF2225: Uncharacteri 71.0 39 0.00085 33.3 10.3 86 83-169 95-193 (214)
232 PRK10941 hypothetical protein; 69.9 14 0.0003 37.9 7.0 91 40-138 144-248 (269)
233 PF12862 Apc5: Anaphase-promot 69.4 37 0.00081 28.6 8.6 74 72-148 7-84 (94)
234 cd01637 IMPase_like Inositol-m 68.8 5.7 0.00012 38.8 3.9 54 438-496 27-80 (238)
235 PF02259 FAT: FAT domain; Int 68.0 32 0.0007 34.7 9.3 73 59-135 142-214 (352)
236 cd01636 FIG FIG, FBPase/IMPase 67.2 7.7 0.00017 36.4 4.3 55 439-496 30-84 (184)
237 KOG0376|consensus 66.9 4 8.6E-05 44.8 2.5 76 30-113 33-114 (476)
238 PRK10941 hypothetical protein; 65.1 16 0.00034 37.4 6.3 46 52-100 204-249 (269)
239 KOG3616|consensus 64.1 79 0.0017 37.2 11.8 179 110-311 1000-1202(1636)
240 PF08424 NRDE-2: NRDE-2, neces 63.1 1.6E+02 0.0034 30.6 13.4 152 8-170 16-183 (321)
241 PF04184 ST7: ST7 protein; In 62.7 27 0.00059 38.9 7.9 66 104-169 258-323 (539)
242 PF13374 TPR_10: Tetratricopep 62.7 12 0.00025 25.6 3.5 26 270-295 5-30 (42)
243 KOG2041|consensus 62.5 32 0.0007 40.0 8.5 102 144-292 763-877 (1189)
244 KOG3617|consensus 61.1 1.1E+02 0.0024 36.5 12.4 110 55-167 959-1106(1416)
245 PF09670 Cas_Cas02710: CRISPR- 60.8 48 0.001 35.4 9.3 74 55-134 121-198 (379)
246 KOG4648|consensus 60.7 10 0.00022 40.6 4.1 119 17-152 89-237 (536)
247 TIGR02508 type_III_yscG type I 60.4 16 0.00035 32.6 4.7 39 269-311 41-79 (115)
248 KOG2796|consensus 59.9 43 0.00093 35.0 8.2 132 34-169 178-314 (366)
249 KOG4340|consensus 59.4 1.9E+02 0.0041 30.9 12.8 177 70-296 15-207 (459)
250 PRK11906 transcriptional regul 58.9 52 0.0011 36.4 9.1 102 53-163 328-429 (458)
251 KOG2300|consensus 56.6 59 0.0013 36.4 9.0 90 63-156 7-103 (629)
252 COG2976 Uncharacterized protei 56.4 22 0.00047 35.2 5.3 62 107-168 91-153 (207)
253 KOG3364|consensus 56.3 28 0.0006 32.7 5.7 72 206-303 31-107 (149)
254 COG3629 DnrI DNA-binding trans 56.2 48 0.001 34.3 8.0 67 102-170 150-216 (280)
255 PF10366 Vps39_1: Vacuolar sor 55.1 21 0.00047 31.4 4.6 38 247-296 29-68 (108)
256 KOG1941|consensus 54.7 2E+02 0.0044 31.4 12.4 208 63-317 83-301 (518)
257 KOG1130|consensus 54.6 1.9E+02 0.0042 32.1 12.3 52 73-135 27-78 (639)
258 PF14929 TAF1_subA: TAF RNA Po 52.6 67 0.0015 36.3 9.0 105 150-314 318-423 (547)
259 COG4105 ComL DNA uptake lipopr 52.0 1.6E+02 0.0034 30.2 10.8 102 61-163 107-226 (254)
260 PF11207 DUF2989: Protein of u 51.0 69 0.0015 31.8 7.8 90 29-124 107-197 (203)
261 KOG3081|consensus 50.9 3.2E+02 0.0068 28.6 14.6 65 105-169 72-136 (299)
262 PF13281 DUF4071: Domain of un 50.9 1.9E+02 0.0041 31.2 11.7 85 62-155 178-274 (374)
263 PF09986 DUF2225: Uncharacteri 49.6 58 0.0013 32.1 7.1 43 268-310 166-208 (214)
264 KOG1497|consensus 48.2 3.8E+02 0.0083 28.8 14.8 135 68-230 7-167 (399)
265 KOG3364|consensus 48.0 79 0.0017 29.8 7.2 83 47-137 17-103 (149)
266 COG3118 Thioredoxin domain-con 47.9 1.5E+02 0.0031 31.3 9.9 50 106-155 237-286 (304)
267 KOG2471|consensus 47.4 23 0.00049 39.6 4.2 44 269-314 337-381 (696)
268 PF10300 DUF3808: Protein of u 47.0 1.8E+02 0.0039 32.0 11.2 115 47-169 251-375 (468)
269 KOG2063|consensus 46.5 2.4E+02 0.0052 33.8 12.5 259 108-418 507-795 (877)
270 PF10579 Rapsyn_N: Rapsyn N-te 45.4 64 0.0014 27.5 5.7 57 109-166 11-68 (80)
271 KOG1941|consensus 44.9 74 0.0016 34.6 7.3 99 39-139 172-280 (518)
272 smart00386 HAT HAT (Half-A-TPR 44.8 36 0.00078 21.6 3.4 30 281-311 1-30 (33)
273 cd01515 Arch_FBPase_1 Archaeal 44.6 30 0.00065 34.6 4.4 52 439-496 31-82 (257)
274 PF14853 Fis1_TPR_C: Fis1 C-te 44.3 47 0.001 25.8 4.4 33 271-303 5-37 (53)
275 PF04190 DUF410: Protein of un 44.1 2E+02 0.0044 29.1 10.2 109 116-291 1-114 (260)
276 PF04184 ST7: ST7 protein; In 43.8 79 0.0017 35.4 7.6 60 65-130 261-320 (539)
277 PRK12676 bifunctional inositol 43.2 29 0.00063 34.8 4.0 51 440-496 37-87 (263)
278 KOG1920|consensus 42.8 60 0.0013 39.6 7.0 61 109-169 956-1027(1265)
279 KOG1920|consensus 41.7 49 0.0011 40.4 6.0 83 69-164 958-1049(1265)
280 KOG1585|consensus 41.7 2.5E+02 0.0053 29.2 10.2 105 64-171 72-180 (308)
281 PF07721 TPR_4: Tetratricopept 40.9 30 0.00065 22.4 2.5 22 108-129 4-25 (26)
282 KOG4814|consensus 40.6 68 0.0015 37.1 6.6 97 63-169 354-456 (872)
283 KOG4234|consensus 39.4 80 0.0017 31.8 6.2 65 66-138 137-201 (271)
284 KOG3616|consensus 37.6 1.1E+02 0.0024 36.1 7.8 174 71-301 845-1029(1636)
285 PF01535 PPR: PPR repeat; Int 37.5 43 0.00093 21.3 2.9 25 144-168 3-27 (31)
286 PF10345 Cohesin_load: Cohesin 35.8 6.9E+02 0.015 28.2 14.6 136 58-225 54-195 (608)
287 PF07079 DUF1347: Protein of u 34.7 77 0.0017 35.3 5.7 61 256-316 476-544 (549)
288 smart00299 CLH Clathrin heavy 34.7 3.2E+02 0.0069 24.0 11.0 36 271-312 99-135 (140)
289 COG2912 Uncharacterized conser 34.0 54 0.0012 33.8 4.3 60 38-100 190-249 (269)
290 PF10300 DUF3808: Protein of u 34.0 76 0.0016 34.9 5.8 52 267-318 305-356 (468)
291 COG5107 RNA14 Pre-mRNA 3'-end 33.8 1.4E+02 0.003 33.5 7.4 64 47-113 26-89 (660)
292 KOG1463|consensus 33.8 2.3E+02 0.0049 30.7 8.8 133 2-169 15-156 (411)
293 KOG1128|consensus 33.6 6.6E+02 0.014 29.7 13.0 43 271-314 523-565 (777)
294 PF11817 Foie-gras_1: Foie gra 33.3 1.4E+02 0.003 29.8 7.0 83 76-167 158-244 (247)
295 PF14863 Alkyl_sulf_dimr: Alky 32.9 98 0.0021 28.8 5.5 46 271-317 74-119 (141)
296 KOG1586|consensus 32.9 3E+02 0.0066 28.4 9.2 97 64-169 155-264 (288)
297 TIGR02710 CRISPR-associated pr 32.0 1.7E+02 0.0036 31.8 7.7 71 57-130 122-196 (380)
298 COG3629 DnrI DNA-binding trans 31.4 2E+02 0.0043 29.9 7.9 65 63-135 153-217 (280)
299 PF07163 Pex26: Pex26 protein; 30.9 3.4E+02 0.0074 28.6 9.4 86 72-165 92-182 (309)
300 KOG2796|consensus 30.0 6.9E+02 0.015 26.4 13.5 182 63-319 122-303 (366)
301 cd01642 Arch_FBPase_2 Putative 29.5 78 0.0017 31.6 4.6 38 440-477 30-67 (244)
302 COG2912 Uncharacterized conser 29.5 1E+02 0.0023 31.8 5.5 59 72-138 190-248 (269)
303 KOG0376|consensus 28.9 27 0.00059 38.6 1.2 88 30-138 18-105 (476)
304 TIGR00756 PPR pentatricopeptid 28.7 82 0.0018 20.1 3.2 26 144-169 3-28 (35)
305 PF13041 PPR_2: PPR repeat fam 27.3 1.9E+02 0.0041 21.0 5.3 38 271-308 7-44 (50)
306 PF06552 TOM20_plant: Plant sp 27.0 2.4E+02 0.0053 27.6 7.2 87 56-151 18-123 (186)
307 KOG1914|consensus 26.3 2.4E+02 0.0052 32.2 7.8 73 53-134 10-82 (656)
308 KOG2041|consensus 26.3 7.1E+02 0.015 29.7 11.5 80 216-312 887-967 (1189)
309 cd00280 TRFH Telomeric Repeat 26.0 1.8E+02 0.0039 28.7 6.1 109 7-137 28-142 (200)
310 PF10037 MRP-S27: Mitochondria 25.6 1.5E+02 0.0032 32.6 6.1 58 109-168 107-165 (429)
311 COG3947 Response regulator con 24.6 6.4E+02 0.014 26.9 10.1 101 66-170 227-342 (361)
312 PF07163 Pex26: Pex26 protein; 24.6 7.1E+02 0.015 26.3 10.4 137 104-303 34-191 (309)
313 PF10579 Rapsyn_N: Rapsyn N-te 24.6 1.5E+02 0.0033 25.2 4.7 51 71-127 15-65 (80)
314 PF08158 NUC130_3NT: NUC130/3N 23.9 43 0.00093 26.1 1.2 21 204-224 30-50 (52)
315 PF12921 ATP13: Mitochondrial 23.9 2.4E+02 0.0051 25.5 6.2 68 209-300 4-85 (126)
316 KOG2396|consensus 23.8 3.5E+02 0.0077 30.6 8.5 72 59-138 101-173 (568)
317 PF07720 TPR_3: Tetratricopept 23.4 1.2E+02 0.0026 21.6 3.4 27 271-297 5-33 (36)
318 PF00244 14-3-3: 14-3-3 protei 23.2 2.8E+02 0.006 27.7 7.2 60 108-168 4-64 (236)
319 PF11846 DUF3366: Domain of un 21.8 2.7E+02 0.0058 26.3 6.5 47 83-136 129-175 (193)
320 PF10345 Cohesin_load: Cohesin 21.7 6.1E+02 0.013 28.7 10.3 86 78-169 36-127 (608)
321 PF12921 ATP13: Mitochondrial 21.3 1.6E+02 0.0035 26.6 4.6 31 106-136 53-83 (126)
322 PF12854 PPR_1: PPR repeat 21.0 1.3E+02 0.0029 20.6 3.2 22 144-165 10-31 (34)
323 PF09797 NatB_MDM20: N-acetylt 20.7 2.3E+02 0.0049 29.7 6.3 35 55-91 209-243 (365)
324 KOG4340|consensus 20.7 4.5E+02 0.0098 28.2 8.2 135 59-233 40-204 (459)
325 PF13041 PPR_2: PPR repeat fam 20.7 1.3E+02 0.0027 21.9 3.2 27 143-169 5-31 (50)
326 cd01643 Bacterial_IMPase_like_ 20.7 1.3E+02 0.0027 29.9 4.1 39 439-477 27-65 (242)
327 PF02259 FAT: FAT domain; Int 20.5 8.6E+02 0.019 24.3 12.2 64 106-169 147-212 (352)
328 KOG4555|consensus 20.4 5.1E+02 0.011 24.7 7.6 95 22-133 46-143 (175)
329 PF14669 Asp_Glu_race_2: Putat 20.1 1.5E+02 0.0032 29.7 4.3 54 113-166 140-206 (233)
330 TIGR02067 his_9_proposed histi 20.0 1.3E+02 0.0029 29.7 4.2 38 440-477 30-67 (251)
No 1
>KOG2076|consensus
Probab=100.00 E-value=6.5e-50 Score=438.90 Aligned_cols=394 Identities=20% Similarity=0.229 Sum_probs=341.6
Q ss_pred ChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHH
Q psy7457 10 NPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQ 89 (497)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~ 89 (497)
||+.|-.++ ..|-+..|-+||+|||+|||.. +|.||+++|+|+.||+++|+.+ +||+||+
T Consensus 206 d~e~W~~la-----dls~~~~~i~qA~~cy~rAI~~-------------~p~n~~~~~ers~L~~~~G~~~--~Am~~f~ 265 (895)
T KOG2076|consen 206 DYELWKRLA-----DLSEQLGNINQARYCYSRAIQA-------------NPSNWELIYERSSLYQKTGDLK--RAMETFL 265 (895)
T ss_pred ChHHHHHHH-----HHHHhcccHHHHHHHHHHHHhc-------------CCcchHHHHHHHHHHHHhChHH--HHHHHHH
Confidence 556776554 5567788999999999999996 8999999999999999999999 9999999
Q ss_pred HHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 90 RYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 90 ~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
++++. .|+++++++.+.++.+|+.|++.++.+.|+++++.++..+.+.|+.+++|||+|||++.++|.++++.|...|+
T Consensus 266 ~l~~~-~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 266 QLLQL-DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHhh-CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred heeeeccCCCCCCCCCccc---cccccccccCCCCCCCCCcchhH-HHHHHHhhcCCCCchhHHhhcc-ccC--cccccc
Q psy7457 170 IEITYFKLFPQDSTSGEES---NIQITNYTVPSDPNLVPPPEILS-KFVITLVHLRSETQFPTLLASL-KFD--VEMYGT 242 (497)
Q Consensus 170 ~~l~~~~~~~~D~e~d~~~---~~~~~~~~~p~~l~l~lPiDLr~-KLgI~ll~Lg~~~~~~~l~~~l-~e~--~ee~~D 242 (497)
+.. ++||+|.|.+. ..-...|++|+++ |++|++ |+.+|++||+..++.+.+++.+ .++ +++.+|
T Consensus 345 r~~-----e~d~~e~~~~~~~~~~~~~~~~~~~~~----s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~d 415 (895)
T KOG2076|consen 345 RES-----EKDDSEWDTDERRREEPNALCEVGKEL----SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVD 415 (895)
T ss_pred ccc-----CCChhhhhhhhhccccccccccCCCCC----CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHH
Confidence 443 34555544321 2223348889998 999999 9999999999999999999999 666 888888
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH--------
Q psy7457 243 ITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEK-------- 314 (497)
Q Consensus 243 ~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~-------- 314 (497)
|| +|||+||++.|+|++|++||.+|++.+.++++.||+++|+||.+
T Consensus 416 --L~------------------------~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 416 --LY------------------------LDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred --HH------------------------HHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 99 99999999999999999999999999999999999999999766
Q ss_pred ---------------------------------hhhcc---Cccccc-----------------------------ccCC
Q psy7457 315 ---------------------------------SECLS---GVVVST-----------------------------VDTG 329 (497)
Q Consensus 315 ---------------------------------l~~l~---~~~~~~-----------------------------~d~~ 329 (497)
++.|+ +|...+ +|++
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 22332 122111 0000
Q ss_pred ------------------------------------------------------------------------CchHHHHH
Q psy7457 330 ------------------------------------------------------------------------SGSWWFQS 337 (497)
Q Consensus 330 ------------------------------------------------------------------------~~~~w~~~ 337 (497)
.++||.++
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 67888655
Q ss_pred HH-------------------hhhhhcccccc--cHHHHhhccccccccccccCCcchhHHHHHHHHHh-----cCCCcc
Q psy7457 338 MS-------------------SAMCSTVLIKD--STEHLDQLSLDATTVLYKTGHIPHAYQLFRVLMLK-----NLDSKV 391 (497)
Q Consensus 338 ~~-------------------~~~~~~~~~~~--~~~~l~~~~l~~~~~~~~~~~~~~ay~~~r~~~~~-----~~~~~~ 391 (497)
++ ++++.+.|..+ ++++|+|+.+ .+|+.++|...||+++|.++.. ++...+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l---~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL---KASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 54 44488888877 7899999999 9999999999999999999999 999999
Q ss_pred chh-hhhccccCCCccchhHHHHHhhhcCCCCccc-ccccccccccccCcCC-cchhhhhhhhhhhHHHHHHhc
Q psy7457 392 VLN-LMNLITLRSSDIRIVRNTLRTFQSKPNNLGL-NVMYANNCNLTSNVNV-QGEEVKKLDVLSNELFVNMLT 462 (497)
Q Consensus 392 ~wn-lfn~~~~~t~~iTL~rfLl~~~~~~p~~~~~-~LL~~~~~g~aGs~N~-~GE~QkkLDV~Anelf~~aL~ 462 (497)
+|| .||.++...+.+.+.||+++...+++..++. .++.||++..+|+..+ .|++...+...|++.++..|-
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 999 9999999999999999999999888877544 8899999999999755 899999999999988887754
No 2
>KOG1458|consensus
Probab=99.61 E-value=6.2e-16 Score=154.63 Aligned_cols=93 Identities=38% Similarity=0.469 Sum_probs=83.4
Q ss_pred CCCccchhHHHHHhhhcCCCCccc--cccc------------------ccccccccCcCCcchhhhhhhhhhhHHHHHHh
Q psy7457 402 RSSDIRIVRNTLRTFQSKPNNLGL--NVMY------------------ANNCNLTSNVNVQGEEVKKLDVLSNELFVNML 461 (497)
Q Consensus 402 ~t~~iTL~rfLl~~~~~~p~~~~~--~LL~------------------~~~~g~aGs~N~~GE~QkkLDV~Anelf~~aL 461 (497)
.++.+||+||++++++++...+++ .+|+ ++..|.+|+.|++||.||+|||++|++|+++|
T Consensus 17 dtd~~Tltrfvl~~~~k~~~~~geLt~LL~~l~~A~K~Ias~Vrkagla~L~g~ag~vN~~GdeqKkLDvlsn~l~in~L 96 (343)
T KOG1458|consen 17 DTDASTLTRFVLEEQRKGKNATGELTQLLNSLQTACKAIASAVRKAGLAKLYGLAGSVNSTGDEQKKLDVLSNDLFINAL 96 (343)
T ss_pred cCCceehhHHhhhccccccccCccHHHHHHHHHHHHHHHHHHHhhhcceeeeccccccccCccchhhhhhhhHHHHHHHH
Confidence 677899999999999998877777 5555 45668999999999999999999999999999
Q ss_pred ccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 462 TSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 462 ~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
++++.+|.++|||.++++.+++ ...|+|+||||
T Consensus 97 ~sS~~~~vlvSEE~~~~i~v~~--~~~G~Y~V~fD 129 (343)
T KOG1458|consen 97 RSSGRTKVLVSEENEELIVVEG--EKRGKYVVCFD 129 (343)
T ss_pred HhcCceEEEEecCCCcceeccC--CcccceEEEeC
Confidence 9999999999999999999975 34699999999
No 3
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.3e-15 Score=151.65 Aligned_cols=89 Identities=24% Similarity=0.283 Sum_probs=78.9
Q ss_pred ccchhHHHHHhhhcCCCCccc--cccc------------------ccccccccCcCCcchhhhhhhhhhhHHHHHHhccc
Q psy7457 405 DIRIVRNTLRTFQSKPNNLGL--NVMY------------------ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSS 464 (497)
Q Consensus 405 ~iTL~rfLl~~~~~~p~~~~~--~LL~------------------~~~~g~aGs~N~~GE~QkkLDV~Anelf~~aL~~s 464 (497)
+.||.+||.+++..++..+++ .+|+ ++..|.+|..|++||.||||||++|++|+++++++
T Consensus 1 ~~Tl~~~l~~~~~~~~~~~~~l~~vl~~i~~a~k~i~~~i~~a~L~~~~G~~g~~N~qGd~QkKlDv~an~~~~~~l~a~ 80 (326)
T COG0158 1 MKTLGRFLVEKQKEFKAATAELSAVLSSIALAGKEIAREINKAGLAGVLGYSGAENVQGDTQKKLDVFANEILIEALKAR 80 (326)
T ss_pred CccHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccCcchhhhhHHHhhHHHHHHHHcc
Confidence 368999999999998887766 4444 34458999999999999999999999999999999
Q ss_pred cCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 465 YSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 465 ~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
+.||++||||+|+|+.+++ + +|+|+|+||
T Consensus 81 ~~Va~~aSEE~d~~v~~~~-~--~g~Y~V~~D 109 (326)
T COG0158 81 GNVAGIASEEEDEPVTFPE-N--NGSYAVAYD 109 (326)
T ss_pred chhheeecccccCceecCC-C--CceEEEEeC
Confidence 9999999999999999985 1 599999999
No 4
>PF00316 FBPase: Fructose-1-6-bisphosphatase; InterPro: IPR000146 This entry represents the fructose-1,6-bisphosphatase (FBPase) class 1 family. FBPase is a critical regulatory enzyme in gluconeogenesis that catalyses the removal of 1-phosphate from fructose 1,6-bis-phosphate to form fructose 6-phosphate [, ]. It is involved in many different metabolic pathways and found in most organisms. FBPase requires metal ions for catalysis (Mg2+ and Mn2+ being preferred) and the enzyme is potently inhibited by Li+. The fold of fructose-1,6-bisphosphatase was noted to be identical to that of inositol-1-phosphatase (IMPase) []. Inositol polyphosphate 1-phosphatase (IPPase), IMPase and FBPase share a sequence motif (Asp-Pro-Ile/Leu-Asp-Gly/Ser-Thr/Ser) which has been shown to bind metal ions and participate in catalysis. This motif is also found in the distantly-related fungal, bacterial and yeast IMPase homologues. It has been suggested that these proteins define an ancient structurally conserved family involved in diverse metabolic pathways, including inositol signalling, gluconeogenesis, sulphate assimilation and possibly quinone metabolism []. This entry also includes sedoheptulose-1,7-bisphosphatase, which is a member of the FBPase class 1 family.; GO: 0042578 phosphoric ester hydrolase activity, 0005975 carbohydrate metabolic process; PDB: 2GQ1_A 2QVR_A 2Q8M_B 2OX3_A 2OWZ_A 3KC0_C 2WBB_A 1FTA_C 2VT5_F 2Y5L_F ....
Probab=99.51 E-value=8.5e-15 Score=150.49 Aligned_cols=88 Identities=32% Similarity=0.471 Sum_probs=75.7
Q ss_pred cchhHHHHHhhhcCCCCccc--cccc------------------ccccccccCcCCcchhhhhhhhhhhHHHHHHhcccc
Q psy7457 406 IRIVRNTLRTFQSKPNNLGL--NVMY------------------ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSY 465 (497)
Q Consensus 406 iTL~rfLl~~~~~~p~~~~~--~LL~------------------~~~~g~aGs~N~~GE~QkkLDV~Anelf~~aL~~s~ 465 (497)
+||+||+++++.+.+ ..++ .+|. .+..|.+|+.|++||.|++|||++|++|.++|++++
T Consensus 1 ~Tl~~~~~~~~~~~~-~~~~l~~ll~~i~~a~k~ia~~v~~a~l~~~~g~~~~~N~~Gd~q~~lDv~an~~~~~al~~~~ 79 (324)
T PF00316_consen 1 MTLTRFLLEQQRRFP-ARGDLSQLLNAIALACKEIARLVRRAGLAGLLGYAGSVNVQGDDQKKLDVIANDIFIEALRSSG 79 (324)
T ss_dssp -BHHHHHHHHHHHCT-STSHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTEEESTTSTEEEHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCchhhhHHHHHHHHHHHHhcCC
Confidence 599999999998888 4444 4444 235788999999999999999999999999999999
Q ss_pred CeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 466 STCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 466 ~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
.||++||||+|+|+.+++ .+.|+|+|+||
T Consensus 80 ~v~~~aSEE~~~~~~~~~--~~~g~y~V~fD 108 (324)
T PF00316_consen 80 SVAALASEEEDEPVPLEE--NPNGKYIVAFD 108 (324)
T ss_dssp TEEEEEETTSSSEEEETG--GCEEEEEEEEE
T ss_pred CeEEEeecCCCcEEEecC--CCCceEEEEEe
Confidence 999999999999999932 34799999999
No 5
>PLN02542 fructose-1,6-bisphosphatase
Probab=99.44 E-value=1.7e-13 Score=144.16 Aligned_cols=96 Identities=30% Similarity=0.318 Sum_probs=78.9
Q ss_pred ccccCCCccchhHHHHHhhhcCCCCccc--cccc------------------ccccccccCcCCcchhhhhhhhhhhHHH
Q psy7457 398 LITLRSSDIRIVRNTLRTFQSKPNNLGL--NVMY------------------ANNCNLTSNVNVQGEEVKKLDVLSNELF 457 (497)
Q Consensus 398 ~~~~~t~~iTL~rfLl~~~~~~p~~~~~--~LL~------------------~~~~g~aGs~N~~GE~QkkLDV~Anelf 457 (497)
+....++.+||++|+++++.+ +...++ .+|. .+..|.+|+.|++||.||+|||++|++|
T Consensus 69 ~~~~~~~~~tL~~~l~~~~~~-~~~~~~l~~ll~~Ia~A~k~Ia~~v~~a~l~~~~g~ag~~N~~Gd~qkkLDviA~~~~ 147 (412)
T PLN02542 69 TKKSGYEIQTLTTWLLKQEQA-GVIDAELTIVLSSISMACKQIASLVQRAGISNLTGVQGAVNIQGEDQKKLDVISNEVF 147 (412)
T ss_pred ccccccccccHHHHHHHHhcc-CCCcHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCcCCCCchhHHHHHHHHHHH
Confidence 345566788999999987654 333333 3444 3568889999999999999999999999
Q ss_pred HHHhccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 458 VNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 458 ~~aL~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
.++|++++.||.++|||+|+|+.+++ .+.|+|+|+||
T Consensus 148 ~~aL~~~~~v~~~aSEE~e~~v~~~~--~~~g~Y~V~fD 184 (412)
T PLN02542 148 SNCLRSSGRTGIIASEEEDVPVAVEE--SYSGNYIVVFD 184 (412)
T ss_pred HHHHhcCCCEEEEeecCCCCceecCC--CCCCCEEEEEc
Confidence 99999999999999999999998874 23699999999
No 6
>PLN02262 fructose-1,6-bisphosphatase
Probab=99.24 E-value=1.1e-11 Score=128.54 Aligned_cols=90 Identities=41% Similarity=0.528 Sum_probs=75.1
Q ss_pred ccchhHHHHHhhhcCCCCccc--cccc------------------ccccccccCcCCcchhhhhhhhhhhHHHHHHhccc
Q psy7457 405 DIRIVRNTLRTFQSKPNNLGL--NVMY------------------ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSS 464 (497)
Q Consensus 405 ~iTL~rfLl~~~~~~p~~~~~--~LL~------------------~~~~g~aGs~N~~GE~QkkLDV~Anelf~~aL~~s 464 (497)
.+||++|+++.+.+++...++ .+|+ .+..|.+|+.|++||.|++||+++|++|.++|+++
T Consensus 12 ~~tl~~~l~~~~~~~~~~~~~l~~l~~~i~~a~~~I~~~v~~~~l~~~~g~~~~~N~~Gd~qk~LDv~Ae~~~~~aL~~~ 91 (340)
T PLN02262 12 LMTITRFVLNEQSKHPEARGDLTILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNDVFIKALVSS 91 (340)
T ss_pred ccCHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCChhhHHHHHHHHHHHHHHhcc
Confidence 478999999887776655544 3444 24678889999999999999999999999999999
Q ss_pred cCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 465 YSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 465 ~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
+.++.++|||+++++.+++ ..+|+|+|+||
T Consensus 92 ~~v~~i~SEE~~~~~~~~~--~~~g~y~v~fD 121 (340)
T PLN02262 92 GRTNVLVSEEDEEAIFVEP--SKRGRYCVVFD 121 (340)
T ss_pred CCccEEEeCCCCCcccccC--CCCCCEEEEEe
Confidence 9999999999999887653 12589999999
No 7
>PLN02628 fructose-1,6-bisphosphatase family protein
Probab=99.23 E-value=1.4e-11 Score=127.85 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=55.8
Q ss_pred ccccCcCCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 434 NLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 434 g~aGs~N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
|.+|+.|++||.||+||++||++|+++|+.++.||+++|||+++++.+++ .|+|+|+||
T Consensus 67 g~~~~~N~~Gd~qkkLDviAn~~~~~aL~~~~~v~~laSEE~~~~v~~~~----~g~y~V~fD 125 (351)
T PLN02628 67 GASGASGSGRDAPKPLDIVSNEIILSSLRNSGKVAVMASEEDDAPIWIGD----DGPYVVVFD 125 (351)
T ss_pred ccccccCCCCCchHHHHHHHHHHHHHHHhcCCCEEEEEEcCCCCCeecCC----CCCEEEEEc
Confidence 66888999999999999999999999999999999999999999998875 699999999
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.20 E-value=4.9e-10 Score=114.70 Aligned_cols=277 Identities=12% Similarity=0.070 Sum_probs=196.3
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
..++++|+-.|.+++. .+|+|+..+...+.+|...|++. +|++.++++++. |..+......+.
T Consensus 48 ~~~~~~A~~~~~~al~-------------~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~--~~~~~~~~~~~~ 110 (389)
T PRK11788 48 NEQPDKAIDLFIEMLK-------------VDPETVELHLALGNLFRRRGEVD--RAIRIHQNLLSR--PDLTREQRLLAL 110 (389)
T ss_pred cCChHHHHHHHHHHHh-------------cCcccHHHHHHHHHHHHHcCcHH--HHHHHHHHHhcC--CCCCHHHHHHHH
Confidence 3455566666666555 48999999999999999999999 999999999987 544333334577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccc
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEES 188 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~ 188 (497)
..+|..|...|+.++|+..|+++++..|. ...-.+.++.++...|+|++|++.+++.....
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------------- 171 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----------------- 171 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-----------------
Confidence 89999999999999999999999987664 35678899999999999999999998765310
Q ss_pred cccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhh
Q psy7457 189 NIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKE 267 (497)
Q Consensus 189 ~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~ 267 (497)
|..... -.......+|.+....|+.+.+...+... ..++ +... .+
T Consensus 172 ---------~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~--~~--------------------- 217 (389)
T PRK11788 172 ---------GDSLRV-EIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVR--AS--------------------- 217 (389)
T ss_pred ---------CCcchH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHH--HH---------------------
Confidence 111000 01224556777778888888887777665 4333 2233 56
Q ss_pred hhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCcccccccCCCchHHHHHHHhhh-hhcc
Q psy7457 268 LVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLSGVVVSTVDTGSGSWWFQSMSSAM-CSTV 346 (497)
Q Consensus 268 ~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~~~~~~~~d~~~~~~w~~~~~~~~-~~~~ 346 (497)
+-+|.+|...|++.+|+++|..+......+.+.++..++.+|.+.+..++.. ..++.+. ..|
T Consensus 218 ---~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~-------------~~l~~~~~~~p- 280 (389)
T PRK11788 218 ---ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL-------------EFLRRALEEYP- 280 (389)
T ss_pred ---HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH-------------HHHHHHHHhCC-
Confidence 8899999999999999999999987655555677899999998876332111 1111111 111
Q ss_pred cccccHHHHhhccccccccccccCCcchhHHHHHHHHHhcCCCccchhhhhccc
Q psy7457 347 LIKDSTEHLDQLSLDATTVLYKTGHIPHAYQLFRVLMLKNLDSKVVLNLMNLIT 400 (497)
Q Consensus 347 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~ay~~~r~~~~~~~~~~~~wnlfn~~~ 400 (497)
+ ..-. .... ......|++..|...++..+...++...++.+++...
T Consensus 281 ---~-~~~~-~~la---~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 281 ---G-ADLL-LALA---QLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred ---C-chHH-HHHH---HHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 0 0111 1111 3455678999999999988888888776666776544
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.20 E-value=5.1e-09 Score=114.88 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=75.6
Q ss_pred hhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy7457 49 EHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSL 128 (497)
Q Consensus 49 ~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~l 128 (497)
..++.++...+|++...+...+.++.+.|++. .|.+.|+++++. .|.+. .+...++.+|...|+.++|+..+
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPD--DAIQRFEKVLTI-DPKNL-----RAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CcCcH-----HHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444455556777777777777777777777 777777777777 66653 56667777777777777777777
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 129 AIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 129 e~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
++++..+|.. ......++..|...|++++|+.++++..
T Consensus 557 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 557 EKAAELNPQE--IEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHhCccc--hhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777654 2344556777777777777777776654
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.12 E-value=7.2e-09 Score=113.67 Aligned_cols=222 Identities=13% Similarity=0.018 Sum_probs=134.0
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy7457 51 ILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAI 130 (497)
Q Consensus 51 ~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~ 130 (497)
++.+.....|.+...+...+.+|...|++. +|.+.|+++++. .|.+. .....+|.+|...|+.++|++.|+.
T Consensus 453 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~-~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 453 AAKKLEKKQPDNASLHNLLGAIYLGKGDLA--KAREAFEKALSI-EPDFF-----PAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHhCCCHH--HHHHHHHHHHhh-CCCcH-----HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344455566777777777888888888888 888888888877 77664 4666777888888888888888888
Q ss_pred HHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchh
Q psy7457 131 AFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEIL 210 (497)
Q Consensus 131 a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr 210 (497)
++..+|.. ...++.++.++...|++++|+.++.+..... |. ..+..
T Consensus 525 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~------~~~~~ 570 (899)
T TIGR02917 525 VLTIDPKN--LRAILALAGLYLRTGNEEEAVAWLEKAAELN--------------------------PQ------EIEPA 570 (899)
T ss_pred HHHhCcCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------cc------chhHH
Confidence 88777753 4556777778888888888888777654310 12 12344
Q ss_pred HHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHH-HHHHHHHhh---------hhhhHHHHHHHHh
Q psy7457 211 SKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEH-YEAYAVQFK---------ELVYLDIAEALIQ 279 (497)
Q Consensus 211 ~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~-~~~~~~~~~---------~~~~ldvaeAl~e 279 (497)
..++.++.+.|+.+.+..++... ...+.. .+ .++..+....... |+.+...|. ...+..+|.+|..
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDS-PE--AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45555566666655555555444 322221 12 3322222222211 333333332 1134667777777
Q ss_pred cccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhc
Q psy7457 280 EHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECL 318 (497)
Q Consensus 280 ~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l 318 (497)
.|.+++|+.+|..++.....+ ...|..++.++.+.+..
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDN-TEAQIGLAQLLLAAKRT 685 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCH
Confidence 777777777777666654433 33466777776664433
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=3.9e-08 Score=90.31 Aligned_cols=189 Identities=13% Similarity=0.026 Sum_probs=153.0
Q ss_pred ccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCC
Q psy7457 61 TILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIR 140 (497)
Q Consensus 61 ~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~ 140 (497)
.....+...+..|.+.|++. +|++.|++.++. .|.+. .....+|.+|...|+.++|++.+++++...|..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~-~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-- 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLE--VAKENLDKALEH-DPDDY-----LAYLALALYYQQLGELEKAEDSFRRALTLNPNN-- 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Confidence 34788999999999999999 999999999999 88774 577889999999999999999999999998864
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhc
Q psy7457 141 PEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHL 220 (497)
Q Consensus 141 ~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~L 220 (497)
....+.++.++...|+|++|++.+.+..... +... ..+....+|.+...+
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------------------------~~~~----~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------------------------LYPQ----PARSLENAGLCALKA 148 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------------------------cccc----chHHHHHHHHHHHHc
Confidence 3567788999999999999999998865310 0111 445677889999999
Q ss_pred CCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCC
Q psy7457 221 RSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKY 299 (497)
Q Consensus 221 g~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y 299 (497)
|+.+.+...+... ..++. ..+ .+ ...|.++...|.+.+|+.++...+.....
T Consensus 149 g~~~~A~~~~~~~~~~~~~-~~~--~~------------------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQ-RPE--SL------------------------LELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred CCHHHHHHHHHHHHHhCcC-ChH--HH------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999888887666 44442 234 66 88999999999999999999998887433
Q ss_pred ChHHHHHHHHHHHHHhhh
Q psy7457 300 NQPGVWKQLAETYEKSEC 317 (497)
Q Consensus 300 ~~~~vwl~lAeCy~~l~~ 317 (497)
.+..|...+.++...+.
T Consensus 202 -~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 202 -TAESLWLGIRIARALGD 218 (234)
T ss_pred -CHHHHHHHHHHHHHHhh
Confidence 45556677888877553
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.98 E-value=5.1e-08 Score=109.27 Aligned_cols=267 Identities=10% Similarity=-0.069 Sum_probs=176.2
Q ss_pred CChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHH
Q psy7457 9 ENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGY 88 (497)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y 88 (497)
.+|..++.++-.-+ ...++++|+-.|.+++.. +|++.+.+...+.++.+.|++. .|++.|
T Consensus 74 ~~~~~l~~l~~~~l-----~~g~~~~A~~~l~~~l~~-------------~P~~~~a~~~la~~l~~~g~~~--~Ai~~l 133 (656)
T PRK15174 74 NGRDLLRRWVISPL-----ASSQPDAVLQVVNKLLAV-------------NVCQPEDVLLVASVLLKSKQYA--TVADLA 133 (656)
T ss_pred CchhHHHHHhhhHh-----hcCCHHHHHHHHHHHHHh-------------CCCChHHHHHHHHHHHHcCCHH--HHHHHH
Confidence 45666666653332 377888999999888874 7888888899999999999999 999999
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 89 QRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 89 ~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
++.++. .|.+. .+...++..|...|+.++|+..+..+....|+....- .+. -.++..|++.+|+...++..
T Consensus 134 ~~Al~l-~P~~~-----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~-~~~--~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 134 EQAWLA-FSGNS-----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI-ATC--LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHh-CCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH-HHH--HHHHHcCCHHHHHHHHHHHH
Confidence 999998 88775 5777888889999999999999988888887653321 222 23677888888888877643
Q ss_pred hheeeeccCCC----------CCCCCCccccccccc-cc-cCCCCCCCCCcchhHHHHHHHhhcCCCCc----hhHHhhc
Q psy7457 169 NIEITYFKLFP----------QDSTSGEESNIQITN-YT-VPSDPNLVPPPEILSKFVITLVHLRSETQ----FPTLLAS 232 (497)
Q Consensus 169 ~~~l~~~~~~~----------~D~e~d~~~~~~~~~-~~-~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~----~~~l~~~ 232 (497)
..- ...... ..+..++. ...+.. .. .|+ ..+.+..||.++..+|..++ +...+..
T Consensus 205 ~~~--~~~~~~~~~~l~~~l~~~g~~~eA-~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 205 PFF--ALERQESAGLAVDTLCAVGKYQEA-IQTGESALARGLD------GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred hcC--CCcchhHHHHHHHHHHHCCCHHHH-HHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 210 000000 00000000 000000 11 133 45788889999999998875 5566665
Q ss_pred c-ccCcccccccchhhhhHHHHHHHH-HHHHHHHhh---------hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCCh
Q psy7457 233 L-KFDVEMYGTITVYLDIAEALIQEH-YEAYAVQFK---------ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQ 301 (497)
Q Consensus 233 l-~e~~ee~~D~~Ly~~~~~~~~~~~-~~~~~~~~~---------~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~ 301 (497)
. ..+|.. .. .+...+....+.. |+++...|. ..++.-.|.+|.+.|.|++|+..|..+........
T Consensus 276 Al~l~P~~-~~--a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQFNSDN-VR--IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHhhCCCC-HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 5 555542 23 4434455555443 777766666 23667789999999999999999988886654432
Q ss_pred HHHHHHHHHHHHHhhh
Q psy7457 302 PGVWKQLAETYEKSEC 317 (497)
Q Consensus 302 ~~vwl~lAeCy~~l~~ 317 (497)
..+...|.+|.+++.
T Consensus 353 -~~~~~~a~al~~~G~ 367 (656)
T PRK15174 353 -KWNRYAAAALLQAGK 367 (656)
T ss_pred -HHHHHHHHHHHHCCC
Confidence 345666888766443
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.96 E-value=8.2e-08 Score=98.36 Aligned_cols=96 Identities=7% Similarity=0.039 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh---
Q psy7457 65 NRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP--- 141 (497)
Q Consensus 65 ~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~--- 141 (497)
.+...+.+|...|++. +|++.|+++++. .|.+. .....+|.+|.+.|+.++|++.++.+....|.....
T Consensus 109 ~~~~La~~~~~~g~~~--~A~~~~~~~l~~-~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (389)
T PRK11788 109 ALQELGQDYLKAGLLD--RAEELFLQLVDE-GDFAE-----GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA 180 (389)
T ss_pred HHHHHHHHHHHCCCHH--HHHHHHHHHHcC-CcchH-----HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3444555566666666 666666666655 44432 345555666666666666666666655555443221
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 142 EHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 142 ~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
.-...++.++...+++.+|++.+.+..
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 112345555555666666666555543
No 14
>PLN02462 sedoheptulose-1,7-bisphosphatase
Probab=98.96 E-value=7.4e-10 Score=113.41 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=56.7
Q ss_pred ccccccCcCCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 432 NCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 432 ~~g~aGs~N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
..|.+|+.|++||.||+||++||++|+++|+.++.|+.++|||+++++++++ .+.|+|+|+||
T Consensus 37 ~~g~~~~~N~~Gd~qk~LDv~A~~~~~~aL~~~~~v~~vaSEE~~~~v~~~~--~~~g~y~V~~D 99 (304)
T PLN02462 37 SCTGTACVNSFGDEQLAVDMLADKLLFEALKYSHVCKYACSEEVPEVQDMGG--PVEGGFSVAFD 99 (304)
T ss_pred CCCccccccCCCchhhHHHHHHHHHHHHHHhcCCceEEEeccCCCCccccCC--CCCCCEEEEEC
Confidence 4577889999999999999999999999999999999999999999887753 23589999999
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.94 E-value=2.1e-08 Score=110.71 Aligned_cols=145 Identities=12% Similarity=0.099 Sum_probs=112.6
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAAS 126 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~ 126 (497)
+..-++.++...+|++...+..++.++.+.|++. +|++.|+++++. .|.+. ++...++.+|...|+.++|+.
T Consensus 349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~--eA~~~~~~al~~-~p~~~-----~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPD--KAEEDFDKALKL-NSEDP-----DIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHcCCHHHHHH
Confidence 3344456666678888889999999999999999 999999999988 88775 677888999999999999999
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCC
Q psy7457 127 SLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPP 206 (497)
Q Consensus 127 ~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lP 206 (497)
.|+++++..|+.. .-..-++.++..+|+|++|+..+++.... .|.+
T Consensus 421 ~~~kal~l~P~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~--------------------------~P~~------ 466 (615)
T TIGR00990 421 DYQKSIDLDPDFI--FSHIQLGVTQYKEGSIASSMATFRRCKKN--------------------------FPEA------ 466 (615)
T ss_pred HHHHHHHcCccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------CCCC------
Confidence 9999999888653 23456788888899999999888875531 1332
Q ss_pred cchhHHHHHHHhhcCCCCchhHHhhcc
Q psy7457 207 PEILSKFVITLVHLRSETQFPTLLASL 233 (497)
Q Consensus 207 iDLr~KLgI~ll~Lg~~~~~~~l~~~l 233 (497)
.++..-+|.++..+|+.+.+...+...
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 245667888889999888877666554
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.94 E-value=5.8e-08 Score=115.02 Aligned_cols=236 Identities=15% Similarity=0.047 Sum_probs=134.8
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHH---
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTIL--- 105 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~--- 105 (497)
..++++|+-+|-+++. .+|++...+...+.+|...|++. +|++.|+++++. .|.+.. -+.
T Consensus 364 ~g~~~eA~~~~~~Al~-------------~~P~~~~a~~~Lg~~~~~~g~~~--eA~~~y~~aL~~-~p~~~~-a~~~L~ 426 (1157)
T PRK11447 364 ANNLAQAERLYQQARQ-------------VDNTDSYAVLGLGDVAMARKDYA--AAERYYQQALRM-DPGNTN-AVRGLA 426 (1157)
T ss_pred CCCHHHHHHHHHHHHH-------------hCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCCCHH-HHHHHH
Confidence 3445555555555554 58999999999999999999999 999999999999 888751 111
Q ss_pred -----------------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy7457 106 -----------------------------------DLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEV 150 (497)
Q Consensus 106 -----------------------------------~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL 150 (497)
+.+..+|..|...|+.++|++.|++++...|+. ..-..-++.+
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQD 504 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 111234555666777777777777777777753 2234456777
Q ss_pred HHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHh
Q psy7457 151 LLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLL 230 (497)
Q Consensus 151 ~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~ 230 (497)
|...|++++|+..+++..... |.+ .+.+..+++.+...|+.+++..++
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~--------------------------P~~------~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK--------------------------PND------PEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--------------------------CCC------HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777777777654210 221 133344444444445444444444
Q ss_pred hcc-cc-Ccccccc------cchhhhhHHHHHHHH-HHHHHHHhh-----hhhhHHHHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 231 ASL-KF-DVEMYGT------ITVYLDIAEALIQEH-YEAYAVQFK-----ELVYLDIAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 231 ~~l-~e-~~ee~~D------~~Ly~~~~~~~~~~~-~~~~~~~~~-----~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
+.+ .. -...+.+ .+.++..|....+.. ++++...+. ..+++.+|++|.+.|++++|+.+|..++..
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333 11 0001111 001111121111111 222222111 114566777777777777777777777766
Q ss_pred CCCChHHHHHHHHHHHHHhh
Q psy7457 297 EKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 297 ~~y~~~~vwl~lAeCy~~l~ 316 (497)
+..+ +..++.+|++|...+
T Consensus 633 ~P~~-~~a~~~la~~~~~~g 651 (1157)
T PRK11447 633 EPGN-ADARLGLIEVDIAQG 651 (1157)
T ss_pred CCCC-HHHHHHHHHHHHHCC
Confidence 5443 344777777766644
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.92 E-value=6.8e-08 Score=88.68 Aligned_cols=201 Identities=11% Similarity=-0.017 Sum_probs=154.4
Q ss_pred ChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHH
Q psy7457 10 NPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQ 89 (497)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~ 89 (497)
.++.|+.++..-.. ..++++|+-.+.+++. .+|++...+..++.+|...|++. +|.+.|+
T Consensus 30 ~~~~~~~la~~~~~-----~~~~~~A~~~~~~~l~-------------~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~ 89 (234)
T TIGR02521 30 AAKIRVQLALGYLE-----QGDLEVAKENLDKALE-------------HDPDDYLAYLALALYYQQLGELE--KAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHH-------------hCcccHHHHHHHHHHHHHcCCHH--HHHHHHH
Confidence 35566665554433 3455566655555544 47889999999999999999999 9999999
Q ss_pred HHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 90 RYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 90 ~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
+.++. .|.+. .+...++..|...|++++|++.++.++...+....+.....++..+...|++.+|++.+.+...
T Consensus 90 ~al~~-~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 90 RALTL-NPNNG-----DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHhh-CCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999 88875 5778899999999999999999999998544334455667789999999999999999988654
Q ss_pred heeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhh
Q psy7457 170 IEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLD 248 (497)
Q Consensus 170 ~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~ 248 (497)
.. |. ..+....+|.++...|+.+.+...++.. ...+ ...+ .+
T Consensus 164 ~~--------------------------~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~-- 206 (234)
T TIGR02521 164 ID--------------------------PQ------RPESLLELAELYYLRGQYKDARAYLERYQQTYN-QTAE--SL-- 206 (234)
T ss_pred hC--------------------------cC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH--HH--
Confidence 11 22 2345678899999999988887777655 3322 2233 55
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhc
Q psy7457 249 IAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVS 295 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~ 295 (497)
...+.++...|.++.|..+...+..
T Consensus 207 ----------------------~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 207 ----------------------WLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred ----------------------HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6778999999999999999877654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.90 E-value=3.7e-08 Score=108.85 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=141.2
Q ss_pred hHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy7457 50 HILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLA 129 (497)
Q Consensus 50 ~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le 129 (497)
..+.++...+|++.+.+..|+.+|..+|++. +|++.|++.+.. .|.+. .....+|.+|...|++++|+..|+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~kal~l-~P~~~-----~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFA--QAGKDYQKSIDL-DPDFI-----FSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHc-CccCH-----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445666779999999999999999999999 999999999999 88774 466789999999999999999999
Q ss_pred HHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCC-cc
Q psy7457 130 IAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPP-PE 208 (497)
Q Consensus 130 ~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lP-iD 208 (497)
.++..+|.. ....+.++.++..+|+|++|++.+.+..... |...+...- ..
T Consensus 458 ~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------------------------p~~~~~~~~~~~ 509 (615)
T TIGR00990 458 RCKKNFPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELE--------------------------KETKPMYMNVLP 509 (615)
T ss_pred HHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------------------CccccccccHHH
Confidence 999999864 4567889999999999999999998866421 111100000 11
Q ss_pred hhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHH
Q psy7457 209 ILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAV 287 (497)
Q Consensus 209 Lr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al 287 (497)
+..+.+...-..|+.+++..+++.. ..+| +... .+ ..+|.+|...|.+++|+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~--a~------------------------~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDI--AV------------------------ATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHH--HH------------------------HHHHHHHHHccCHHHHH
Confidence 2233333333467777777776654 4343 2223 44 88999999999999999
Q ss_pred HHHHHHhcCCC
Q psy7457 288 QVLVLLVSSEK 298 (497)
Q Consensus 288 ~~l~~L~~~~~ 298 (497)
++|........
T Consensus 563 ~~~e~A~~l~~ 573 (615)
T TIGR00990 563 KLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHhc
Confidence 99998876644
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.87 E-value=1.5e-07 Score=95.41 Aligned_cols=186 Identities=14% Similarity=0.034 Sum_probs=113.6
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIA 131 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a 131 (497)
+.+|..-+|++...+..++.+|...|++. .|++.|++.++. -|.+. .+...++.+|...|+.++|++.++++
T Consensus 87 ~~~Al~l~P~~~~a~~~lg~~~~~~g~~~--~A~~~~~~Al~l-~P~~~-----~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 87 FSQALALRPDMADAYNYLGIYLTQAGNFD--AAYEAFDSVLEL-DPTYN-----YAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444556666677777777777777777 777777777766 66554 34456666666677777777777777
Q ss_pred HHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhH
Q psy7457 132 FQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILS 211 (497)
Q Consensus 132 ~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~ 211 (497)
+..+|+.. ...+...+....+++.+|+..+.+..... -|+. .
T Consensus 159 l~~~P~~~---~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-------------------------~~~~--------~-- 200 (296)
T PRK11189 159 YQDDPNDP---YRALWLYLAESKLDPKQAKENLKQRYEKL-------------------------DKEQ--------W-- 200 (296)
T ss_pred HHhCCCCH---HHHHHHHHHHccCCHHHHHHHHHHHHhhC-------------------------Cccc--------c--
Confidence 76666432 12333333444556666666665433100 0111 1
Q ss_pred HHHHHHhhcCCCCchhHHhhccc----cCcc---cccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHH
Q psy7457 212 KFVITLVHLRSETQFPTLLASLK----FDVE---MYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEA 284 (497)
Q Consensus 212 KLgI~ll~Lg~~~~~~~l~~~l~----e~~e---e~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~ 284 (497)
..+++.+.+|+....+ .++.+. .+++ ...+ .| +-+|.+|...|++.
T Consensus 201 ~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~e--a~------------------------~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 201 GWNIVEFYLGKISEET-LMERLKAGATDNTELAERLCE--TY------------------------FYLAKYYLSLGDLD 253 (296)
T ss_pred HHHHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHH--HH------------------------HHHHHHHHHCCCHH
Confidence 1467778888877643 333221 1111 1112 34 89999999999999
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHH
Q psy7457 285 YAVQVLVLLVSSEKYNQPGVWKQLAE 310 (497)
Q Consensus 285 ~Al~~l~~L~~~~~y~~~~vwl~lAe 310 (497)
+|+..|...+....++.+..-..+-|
T Consensus 254 ~A~~~~~~Al~~~~~~~~e~~~~~~e 279 (296)
T PRK11189 254 EAAALFKLALANNVYNFVEHRYALLE 279 (296)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 99999999999988876664443333
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=98.85 E-value=1.1e-07 Score=104.37 Aligned_cols=200 Identities=8% Similarity=-0.089 Sum_probs=154.7
Q ss_pred hhhHHHhhcCCCCccHHHHHHHHHHHHHhCC---------cchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhc
Q psy7457 48 IEHILIQRGLSKDTILDNRARRLRLCDEIGL---------KNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTA 118 (497)
Q Consensus 48 ~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~---------~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~ 118 (497)
....+.||...||++...+...|.+|..+|. .. +|++.+++.++. -|.+. .+...+|.++...
T Consensus 280 A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~--~A~~~~~~Al~l-dP~~~-----~a~~~lg~~~~~~ 351 (553)
T PRK12370 280 ALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMI--KAKEHAIKATEL-DHNNP-----QALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHH--HHHHHHHHHHhc-CCCCH-----HHHHHHHHHHHHc
Confidence 3345689999999999998888887765543 56 999999999999 89885 5677889999999
Q ss_pred CCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccC
Q psy7457 119 RNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVP 198 (497)
Q Consensus 119 ~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p 198 (497)
|+.++|+..|++++..+|+. ......++.++...|++++|+..+.+..+.- |
T Consensus 352 g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--------------------------P 403 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPIS--ADIKYYYGWNLFMAGQLEEALQTINECLKLD--------------------------P 403 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------------------C
Confidence 99999999999999999976 3456888999999999999999999976521 3
Q ss_pred CCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy7457 199 SDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEAL 277 (497)
Q Consensus 199 ~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl 277 (497)
... ....-++..+..+|..+++...+..+ ..++.+... .+ .-.|.+|
T Consensus 404 ~~~------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~--~~------------------------~~la~~l 451 (553)
T PRK12370 404 TRA------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI--LL------------------------SMQVMFL 451 (553)
T ss_pred CCh------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH--HH------------------------HHHHHHH
Confidence 322 22333444567788877777666555 444344555 66 8899999
Q ss_pred HhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhh
Q psy7457 278 IQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 278 ~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
...|.+++|...+..+...+..+..+ +..++..|...+
T Consensus 452 ~~~G~~~eA~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g 489 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQEITGLIA-VNLLYAEYCQNS 489 (553)
T ss_pred HhCCCHHHHHHHHHHhhhccchhHHH-HHHHHHHHhccH
Confidence 99999999999999987776654444 666777665544
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=1.2e-08 Score=101.27 Aligned_cols=239 Identities=12% Similarity=0.080 Sum_probs=74.8
Q ss_pred hhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChh
Q psy7457 23 SQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQ 102 (497)
Q Consensus 23 ~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~ 102 (497)
++.-....+|++|+=++.+.+.. ..+|+|.+++.-++.|+..+|++. .|.+.|+++++. -|.+.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~-----------~~~~~~~~~~~~~a~La~~~~~~~--~A~~ay~~l~~~-~~~~~-- 78 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK-----------IAPPDDPEYWRLLADLAWSLGDYD--EAIEAYEKLLAS-DKANP-- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-----------cccccccccccccccccccccccc--cccccccccccc-ccccc--
Confidence 33344667888998888655441 125677777778999999999999 999999999988 55544
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccC-CCC-
Q psy7457 103 TILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKL-FPQ- 180 (497)
Q Consensus 103 ~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~-~~~- 180 (497)
.....++.+ ...+++.+|+++++.+|++.++. ..+..+++++...+.|+++.++|....... ....+ ..|
T Consensus 79 ---~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 150 (280)
T PF13429_consen 79 ---QDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWL 150 (280)
T ss_dssp ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHH
T ss_pred ---ccccccccc-ccccccccccccccccccccccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHH
Confidence 466777777 68999999999999999877643 334567788888899999888888865311 00000 000
Q ss_pred ------CCCCCcccccc-ccc-c-ccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhccccCcccccccchhhhhHH
Q psy7457 181 ------DSTSGEESNIQ-ITN-Y-TVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAE 251 (497)
Q Consensus 181 ------D~e~d~~~~~~-~~~-~-~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~ 251 (497)
....+.....+ +.. . ..|++ .+++..++-.++..|+.+++..++..+.......++ ++
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~--~~----- 217 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALELDPDD------PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD--LW----- 217 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--HC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--HH-----
Confidence 00000000000 000 1 12443 356777777777777766666666555221234445 66
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhc
Q psy7457 252 ALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECL 318 (497)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l 318 (497)
...|.+|...|.+++|+.+|..+... .-+++.+...+|+++.+.+..
T Consensus 218 -------------------~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 218 -------------------DALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp -------------------HHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT-----
T ss_pred -------------------HHHHHHhccccccccccccccccccc-ccccccccccccccccccccc
Confidence 88999999999999999999998874 345677789999999887743
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.85 E-value=2.5e-07 Score=103.71 Aligned_cols=252 Identities=14% Similarity=-0.003 Sum_probs=175.6
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAAS 126 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~ 126 (497)
+..-.+.++....|++.+.+...+..+...|++. .|++.|++++.. .|.+. ++...+|..|...|+.++|++
T Consensus 60 ~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~--~A~~~l~~~l~~-~P~~~-----~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 60 VGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD--AVLQVVNKLLAV-NVCQP-----EDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH--HHHHHHHHHHHh-CCCCh-----HHHHHHHHHHHHcCCHHHHHH
Confidence 3344445555678899999999999999999999 999999999999 99886 678899999999999999999
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCC--C----CCCCcccccc-cccc-c-c
Q psy7457 127 SLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQ--D----STSGEESNIQ-ITNY-T-V 197 (497)
Q Consensus 127 ~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~--D----~e~d~~~~~~-~~~~-~-~ 197 (497)
.|++++...|+. ......++.++...|++++|+...++..... ....... - ...+...... +... . .
T Consensus 132 ~l~~Al~l~P~~--~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 132 LAEQAWLAFSGN--SQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHhCCCc--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999875 4556778999999999999999887654211 0000000 0 0000000000 0000 0 0
Q ss_pred CCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHH-HHH----HHHHhh-----
Q psy7457 198 PSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEH-YEA----YAVQFK----- 266 (497)
Q Consensus 198 p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~-~~~----~~~~~~----- 266 (497)
|.. +......++.++..+|+.+++...+... ..+|.+ .+ .++..+....+.. |++ +...|.
T Consensus 208 ~~~-----~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~-~~--~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 208 ALE-----RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG-AA--LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred CCc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HH--HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 111 1223355677888999988888777766 555433 33 4444454444433 554 333333
Q ss_pred ----hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhcc
Q psy7457 267 ----ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 267 ----~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~ 319 (497)
..++...|.+|.+.|.+++|+..|...+..... .+.++..+|.+|.+.+..+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYT 335 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 237889999999999999999999999987654 4566999999998865544
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.81 E-value=1.7e-07 Score=111.03 Aligned_cols=225 Identities=11% Similarity=0.000 Sum_probs=147.0
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHH
Q psy7457 67 ARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNL 146 (497)
Q Consensus 67 ~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNi 146 (497)
..++..+.+.|++. +|++.|+++++. .|.+. .+...+|.+|...|+.++|++.|++++...|+.. ..+.-
T Consensus 355 ~~~g~~~~~~g~~~--eA~~~~~~Al~~-~P~~~-----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~--~a~~~ 424 (1157)
T PRK11447 355 IQQGDAALKANNLA--QAERLYQQARQV-DNTDS-----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT--NAVRG 424 (1157)
T ss_pred HHHHHHHHHCCCHH--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence 45677888999999 999999999999 89775 5777899999999999999999999999998752 34555
Q ss_pred HHHHHHhhccHHHHHHHHHHhchheeeeccC-------CC-----------CCCCCCccccccccc-c-ccCCCCCCCCC
Q psy7457 147 YLEVLLELKRYETCVEVLRRFANIEITYFKL-------FP-----------QDSTSGEESNIQITN-Y-TVPSDPNLVPP 206 (497)
Q Consensus 147 LaEL~i~~k~y~~al~~I~~~~~~~l~~~~~-------~~-----------~D~e~d~~~~~~~~~-~-~~p~~l~l~lP 206 (497)
++.+|. .+++++|+..+.+..... .... .. ..+..++. ...+.. . .-|++
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~--~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA-~~~~~~Al~~~P~~------ 494 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQ--RRSIDDIERSLQNDRLAQQAEALENQGKWAQA-AELQRQRLALDPGS------ 494 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHH--HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH-HHHHHHHHHhCCCC------
Confidence 666664 356788877776533210 0000 00 00000000 000000 1 12554
Q ss_pred cchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHH-HHHHHHHhh------------------
Q psy7457 207 PEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEH-YEAYAVQFK------------------ 266 (497)
Q Consensus 207 iDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~-~~~~~~~~~------------------ 266 (497)
..++..+|.++..+|+.+++...+..+ ..+|.+... +| ..+-...+.+ ++++...+.
T Consensus 495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~--~~-a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l 571 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ--VY-AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL 571 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH--HH-HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence 368899999999999999998888777 555543322 22 2221111111 333322221
Q ss_pred -hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhcc
Q psy7457 267 -ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 267 -~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~ 319 (497)
...++..|++|.+.|.+++|+.++. . .-+.+.+++.+|.+|.+.+..+
T Consensus 572 ~~~~~l~~a~~l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 572 QSDQVLETANRLRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHH
Confidence 1246788999999999999999987 1 2235567899999998866554
No 24
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=98.75 E-value=1.2e-08 Score=105.67 Aligned_cols=89 Identities=27% Similarity=0.318 Sum_probs=72.8
Q ss_pred ccchhHHHHHhhhcCCCCccc--cccc------------------ccccccccCcCCcchhhhhhhhhhhHHHHHHhccc
Q psy7457 405 DIRIVRNTLRTFQSKPNNLGL--NVMY------------------ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSS 464 (497)
Q Consensus 405 ~iTL~rfLl~~~~~~p~~~~~--~LL~------------------~~~~g~aGs~N~~GE~QkkLDV~Anelf~~aL~~s 464 (497)
.+||++|+.+.+.+.+...++ .+|. .+..|.+|+.|++||.|+++|+.+|++|+++|+.+
T Consensus 2 ~~tl~~~l~~~~~~~~~~~~~l~~ll~~Ia~Aak~I~~~i~~~~l~~~~g~~~~~N~~Gd~~~~lD~~ae~~i~~~L~~~ 81 (327)
T PRK09293 2 MKTLGEFLVEQQREFPHATGELTALISAIALAAKIISRAINKGGLADILGAAGTENVQGETQKKLDVFANEILIEALKAR 81 (327)
T ss_pred cccHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 468999999877665554444 3333 25678889999999999999999999999999999
Q ss_pred cCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 465 YSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 465 ~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
+.++.++|||.++++.+++ + .|+|+++||
T Consensus 82 ~p~~~i~SEE~~~~~~~~~-~--~g~y~wviD 110 (327)
T PRK09293 82 GHVAGLASEEEDEIVPIPE-N--EGKYLVAYD 110 (327)
T ss_pred CCCcEEEccCCCCccccCC-C--CCCEEEEEE
Confidence 9999999999998876553 0 388999998
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=98.65 E-value=6.1e-07 Score=98.55 Aligned_cols=182 Identities=10% Similarity=-0.033 Sum_probs=141.1
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAAS 126 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~ 126 (497)
+....+.+|..-||+|...+..++.++...|++. +|+..|++.++. .|.+. .+.-.+|.+|...|+.++|+.
T Consensus 322 ~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~--~A~~~~~~Al~l-~P~~~-----~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 322 KAKEHAIKATELDHNNPQALGLLGLINTIHSEYI--VGSLLFKQANLL-SPISA-----DIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHCCCHHHHHH
Confidence 3444556777789999999999999999999999 999999999999 99885 567789999999999999999
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCC
Q psy7457 127 SLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPP 206 (497)
Q Consensus 127 ~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lP 206 (497)
.+++++...|....+. ..++.++...|+|++|+.++++..... -|+ .
T Consensus 394 ~~~~Al~l~P~~~~~~--~~~~~~~~~~g~~eeA~~~~~~~l~~~-------------------------~p~------~ 440 (553)
T PRK12370 394 TINECLKLDPTRAAAG--ITKLWITYYHTGIDDAIRLGDELRSQH-------------------------LQD------N 440 (553)
T ss_pred HHHHHHhcCCCChhhH--HHHHHHHHhccCHHHHHHHHHHHHHhc-------------------------ccc------C
Confidence 9999999999865442 234445666899999999987754210 022 2
Q ss_pred cchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHH
Q psy7457 207 PEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAY 285 (497)
Q Consensus 207 iDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~ 285 (497)
.....-+|.++..+|+.+++...+..+ ..+++... .. ..++..|...|+ .
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~---~~------------------------~~l~~~~~~~g~--~ 491 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI---AV------------------------NLLYAEYCQNSE--R 491 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH---HH------------------------HHHHHHHhccHH--H
Confidence 346788999999999999988888766 44432111 22 667777888884 7
Q ss_pred HHHHHHHHhcCCC
Q psy7457 286 AVQVLVLLVSSEK 298 (497)
Q Consensus 286 Al~~l~~L~~~~~ 298 (497)
|...+..|.....
T Consensus 492 a~~~l~~ll~~~~ 504 (553)
T PRK12370 492 ALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHHHHhh
Confidence 8887877777554
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.65 E-value=8.8e-07 Score=103.62 Aligned_cols=215 Identities=14% Similarity=0.054 Sum_probs=157.8
Q ss_pred ChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHH
Q psy7457 10 NPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQ 89 (497)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~ 89 (497)
+|..|+.+++.... ..|.+|+.+|-+++.. .|+++. +...+..+.+.|++. .|++.|+
T Consensus 476 ~~~a~~~LG~~l~~------~~~~eAi~a~~~Al~~-------------~Pd~~~-~L~lA~al~~~Gr~e--eAi~~~r 533 (987)
T PRK09782 476 DAAAWNRLAKCYRD------TLPGVALYAWLQAEQR-------------QPDAWQ-HRAVAYQAYQVEDYA--TALAAWQ 533 (987)
T ss_pred CHHHHHHHHHHHHh------CCcHHHHHHHHHHHHh-------------CCchHH-HHHHHHHHHHCCCHH--HHHHHHH
Confidence 67788888776652 3677788877777653 466554 555677778999999 9999999
Q ss_pred HHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh---ccHHHHHHHHHH
Q psy7457 90 RYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLEL---KRYETCVEVLRR 166 (497)
Q Consensus 90 ~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~---k~y~~al~~I~~ 166 (497)
++... -|.+. ..-.+|..+.+.|+.+.|+..|..++...|+. .+++..+.... |+|.+|+..+++
T Consensus 534 ka~~~-~p~~~------a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-----~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 534 KISLH-DMSNE------DLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-----NALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHhcc-CCCcH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 98777 44432 34577888999999999999999999887654 34454555455 999999999888
Q ss_pred hchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccch
Q psy7457 167 FANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITV 245 (497)
Q Consensus 167 ~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~L 245 (497)
....- |+ .+....+|.++.++|..+++...+... ..+|. .++ .
T Consensus 602 AL~l~--------------------------P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~--a 645 (987)
T PRK09782 602 SLNIA--------------------------PS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSN--Y 645 (987)
T ss_pred HHHhC--------------------------CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH--H
Confidence 66411 32 256788888999999988888887766 55553 334 6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhcc
Q psy7457 246 YLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 246 y~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~ 319 (497)
+ ...|-+|.+.|.+++|+.+|...+.... +.+.+|..+|-||.+++...
T Consensus 646 ~------------------------~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 646 Q------------------------AALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred H------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHH
Confidence 6 8888888888888888888888877655 44566888888887766544
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.54 E-value=2.5e-05 Score=89.17 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=72.2
Q ss_pred CcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccc-cchhhhhHHHHHHHH-HHHHHHHhhh---------------
Q psy7457 206 PPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGT-ITVYLDIAEALIQEH-YEAYAVQFKE--------------- 267 (497)
Q Consensus 206 PiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D-~~Ly~~~~~~~~~~~-~~~~~~~~~~--------------- 267 (497)
|-+.+..+|..++.+|+.+.+..++..+ ..++....+ .+.....+-+.++.. |+++...+.+
T Consensus 271 P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~ 350 (765)
T PRK10049 271 PPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSP 350 (765)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCC
Confidence 7777787888899999988888887776 444332110 112211112222322 5555544431
Q ss_pred ---------hhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhh
Q psy7457 268 ---------LVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 268 ---------~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
.+++-.|.++...|++++|+..|..++.....+ +.+|+.+|.++...+
T Consensus 351 ~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-~~l~~~lA~l~~~~g 407 (765)
T PRK10049 351 TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-QGLRIDYASVLQARG 407 (765)
T ss_pred CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcC
Confidence 134567888888999999999999888877766 667899999887766
No 28
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=98.50 E-value=1.3e-07 Score=97.67 Aligned_cols=64 Identities=41% Similarity=0.586 Sum_probs=57.2
Q ss_pred cccccccCcCCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 431 NNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 431 ~~~g~aGs~N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
+..|.+|+.|++||.|+++|+++|++|+++|++++.+++++|||+++++.+++ .+.|+|+|+||
T Consensus 39 ~~~g~~~~~N~~GD~q~~lDv~ae~~~~~~L~~~~~~~~i~SEE~~~~~~~~~--~~~g~y~vv~D 102 (315)
T cd00354 39 GLLGLAGSVNVQGDEQKKLDVLANDIFIEALKSSGVVAVLASEEEEEPVPVEE--SKDGKYLVAFD 102 (315)
T ss_pred cccccccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCcEEEeCCCCCCcCcCC--CCCCCEEEEEE
Confidence 56788899999999999999999999999999999999999999999876642 23589999999
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=8.6e-06 Score=78.39 Aligned_cols=178 Identities=8% Similarity=-0.002 Sum_probs=130.7
Q ss_pred CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 59 KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 59 ~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
++...+.++.++..|.+.|++. .|+..|+++++. .|.+. +..+..-.+|..|...|+++.|++.|+.++..+|+.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~--~A~~~~~~~~~~-~p~~~--~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYT--EAIKYFEALESR-YPFSP--YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh-CCCch--hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 5677999999999999999999 999999999999 99875 223466788999999999999999999999999976
Q ss_pred CChh-HHHHHHHHHHhh--------ccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcch
Q psy7457 139 IRPE-HCNLYLEVLLEL--------KRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEI 209 (497)
Q Consensus 139 f~~~-~vNiLaEL~i~~--------k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDL 209 (497)
.... -+..+.-.+... +++.+|++.+.+..... |++. .....
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~---~~~~a 154 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--------------------------PNSE---YAPDA 154 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--------------------------CCCh---hHHHH
Confidence 5432 244555555544 78999999988876421 1110 01111
Q ss_pred --------------hHHHHHHHhhcCCCCchhHHhhcc-ccCcc--cccccchhhhhHHHHHHHHHHHHHHHhhhhhhHH
Q psy7457 210 --------------LSKFVITLVHLRSETQFPTLLASL-KFDVE--MYGTITVYLDIAEALIQEHYEAYAVQFKELVYLD 272 (497)
Q Consensus 210 --------------r~KLgI~ll~Lg~~~~~~~l~~~l-~e~~e--e~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ld 272 (497)
...+|-++++.|+...+...+..+ ...|. ...+ .+ +.
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--a~------------------------~~ 208 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEE--AL------------------------AR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHH--HH------------------------HH
Confidence 124555666667766666665555 33222 2233 55 99
Q ss_pred HHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 273 IAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 273 vaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
+|.+|...|++++|.+++..|...
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.49 E-value=3.6e-06 Score=98.58 Aligned_cols=191 Identities=11% Similarity=-0.034 Sum_probs=153.3
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIA 131 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a 131 (497)
+.++...+|.+ ..+...+.++.+.|+.. .|+..|++.++. -|... .+.-.++......|+.+.|+..|+++
T Consensus 532 ~rka~~~~p~~-~a~~~la~all~~Gd~~--eA~~~l~qAL~l-~P~~~-----~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 532 WQKISLHDMSN-EDLLAAANTAQAAGNGA--ARDRWLQQAEQR-GLGDN-----ALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHhccCCCc-HHHHHHHHHHHHCCCHH--HHHHHHHHHHhc-CCccH-----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444455554 45778899999999999 999999999999 77664 34445666666779999999999999
Q ss_pred HHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhH
Q psy7457 132 FQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILS 211 (497)
Q Consensus 132 ~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~ 211 (497)
+...|+ .....-++.++..+|++++|+..+++..... |++ .+.+.
T Consensus 603 L~l~P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--------------------------Pd~------~~a~~ 647 (987)
T PRK09782 603 LNIAPS---ANAYVARATIYRQRHNVPAAVSDLRAALELE--------------------------PNN------SNYQA 647 (987)
T ss_pred HHhCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------CCC------HHHHH
Confidence 999994 5678889999999999999999998866421 453 37899
Q ss_pred HHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHH
Q psy7457 212 KFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVL 290 (497)
Q Consensus 212 KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l 290 (497)
.+|.++..+|+.+++..++... ..+| +.++ ++ ...|-+|...|.+++|+..|
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~--a~------------------------~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLP-DDPA--LI------------------------RQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH--HH------------------------HHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999888887766 5555 4456 77 99999999999999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHH
Q psy7457 291 VLLVSSEKYNQPGVWKQLAETYEK 314 (497)
Q Consensus 291 ~~L~~~~~y~~~~vwl~lAeCy~~ 314 (497)
...+..+. +++.+-..+|+....
T Consensus 701 ~~Al~l~P-~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 701 RLVIDDID-NQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHhcCC-CCchhhhhhhHHHHH
Confidence 99998875 555666677766444
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1.2e-06 Score=79.95 Aligned_cols=124 Identities=12% Similarity=0.009 Sum_probs=95.4
Q ss_pred CCccCCCCCChHHHHHHHHHHHhhhcccccCCccceehhhcccCc----chhhhHHHhhcCCCCccHHHHHHHHHHHHHh
Q psy7457 1 MMKTGQSYENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTP----KKIEHILIQRGLSKDTILDNRARRLRLCDEI 76 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~----~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~el 76 (497)
|||..|.-.-|+.++.-+ ++ .+|+. .|.++.+... ......+.++...+|.+.+.+..++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~a---l~------~~p~~-~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 71 (144)
T PRK15359 2 MMKEDQKNKIPEDILKQL---LS------VDPET-VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML 71 (144)
T ss_pred CCccccccCCHHHHHHHH---HH------cCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 789999888888776432 11 12222 3333333322 2334455777778999999999999999999
Q ss_pred CCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChh
Q psy7457 77 GLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPE 142 (497)
Q Consensus 77 G~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~ 142 (497)
|++. .|+..|++.+.. .|.+. +..-.++..|...|+.++|+..|..++...|+...+-
T Consensus 72 g~~~--~A~~~y~~Al~l-~p~~~-----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 72 KEYT--TAINFYGHALML-DASHP-----EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred hhHH--HHHHHHHHHHhc-CCCCc-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999 999999999999 89886 6778999999999999999999999999999876553
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.47 E-value=9.9e-08 Score=94.78 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHhccC-CCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhH
Q psy7457 65 NRARRLRLCDEIGLKNRGFVLAGYQRYLKNIT-PDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEH 143 (497)
Q Consensus 65 ~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~-P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~ 143 (497)
.....|.++-..|++. +|++.+.+..+. . |+++. ++.+.+|.+....++.+.|+++|++.+...+. +..+
T Consensus 10 ~~l~~A~~~~~~~~~~--~Al~~L~~~~~~-~~~~~~~----~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~ 80 (280)
T PF13429_consen 10 EALRLARLLYQRGDYE--KALEVLKKAAQK-IAPPDDP----EYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc--cccccccccccc-ccccccc----cccccccccccccccccccccccccccccccc--cccc
Confidence 3345699999999999 999999887777 5 45542 67889999999999999999999999987665 5677
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCC
Q psy7457 144 CNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSE 223 (497)
Q Consensus 144 vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~ 223 (497)
..-|+.+ +..++|++|+++.....+. .. + |.-+ ..+..+..+.|+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~----~~----------------------~------~~~l-~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYER----DG----------------------D------PRYL-LSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred ccccccc-ccccccccccccccccccc----cc----------------------c------cchh-hHHHHHHHHHhHH
Confidence 8888888 7999999999998764321 00 0 1111 1233345566666
Q ss_pred CchhHHhhcc-cc-CcccccccchhhhhHHHHHHHH-HHHHHHHhh---------hhhhHHHHHHHHhcccHHHHHHHHH
Q psy7457 224 TQFPTLLASL-KF-DVEMYGTITVYLDIAEALIQEH-YEAYAVQFK---------ELVYLDIAEALIQEHYEAYAVQVLV 291 (497)
Q Consensus 224 ~~~~~l~~~l-~e-~~ee~~D~~Ly~~~~~~~~~~~-~~~~~~~~~---------~~~~ldvaeAl~e~g~y~~Al~~l~ 291 (497)
+.+..++..+ .. ..+.... +|+..|....+.. ++.+...|. +.+....+-.+.+.|.+.+|...+.
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~--~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDSAR--FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHHHHHHHHHHH-T---T-HH--HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 6666666655 21 1122233 5533333333222 333333332 2244666777777777777777776
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHhh
Q psy7457 292 LLVSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 292 ~L~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
.+.... -+++.+|..+|.+|..++
T Consensus 205 ~~~~~~-~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 205 RLLKAA-PDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHH--HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHC-cCHHHHHHHHHHHhcccc
Confidence 666654 223446777777777766
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.42 E-value=1.5e-05 Score=84.21 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=117.1
Q ss_pred cCCCCccH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7457 56 GLSKDTIL-DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQY 134 (497)
Q Consensus 56 ~~~~p~n~-~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~ 134 (497)
...+|++. -....++.++...|++. +|++.++++++. -|.+. .+.+.++..|...|+.+.|++++...-+.
T Consensus 145 ~~~~~~~~~~~~l~~a~l~l~~g~~~--~Al~~l~~~~~~-~P~~~-----~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 145 AELADNDQLPVEITRVRIQLARNENH--AARHGVDKLLEV-APRHP-----EVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HhcCCcchHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhc-CCCCH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 33455542 33334466666666666 666666666666 66664 56666666666666666666666665554
Q ss_pred ccCCCChhHHH-----HHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcch
Q psy7457 135 SAHLIRPEHCN-----LYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEI 209 (497)
Q Consensus 135 ~~~~f~~~~vN-----iLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDL 209 (497)
.+- +.++.+ .+.++.-. ..-....+.+.+.-.. -+ ...|+ -+++
T Consensus 217 ~~~--~~~~~~~l~~~a~~~l~~~-~~~~~~~~~l~~~w~~--------------lp--------~~~~~------~~~~ 265 (398)
T PRK10747 217 HVG--DEEHRAMLEQQAWIGLMDQ-AMADQGSEGLKRWWKN--------------QS--------RKTRH------QVAL 265 (398)
T ss_pred CCC--CHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHh--------------CC--------HHHhC------CHHH
Confidence 432 222222 11111111 0001111111111100 00 00133 2467
Q ss_pred hHHHHHHHhhcCCCCchhHHhhcc-ccCc-ccccccchhhhhHHHHHHHHHHHHHHHhh---------hhhhHHHHHHHH
Q psy7457 210 LSKFVITLVHLRSETQFPTLLASL-KFDV-EMYGTITVYLDIAEALIQEHYEAYAVQFK---------ELVYLDIAEALI 278 (497)
Q Consensus 210 r~KLgI~ll~Lg~~~~~~~l~~~l-~e~~-ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~---------~~~~ldvaeAl~ 278 (497)
+..++..++..|+.+.+..++... ..++ ++... +| ++ ..+.+++....... ..+++-.|..++
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~--l~---~~-l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVL--LI---PR-LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH--HH---hh-ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 777888888888888877776555 3211 11111 22 11 11123333322221 227799999999
Q ss_pred hcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhh
Q psy7457 279 QEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSEC 317 (497)
Q Consensus 279 e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~ 317 (497)
..|.+..|..+|+.++..... ...+..+|.++++.+.
T Consensus 340 ~~~~~~~A~~~le~al~~~P~--~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRPD--AYDYAWLADALDRLHK 376 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCC
Confidence 999999999999999987643 3446789999988663
No 34
>KOG4626|consensus
Probab=98.36 E-value=7.2e-06 Score=90.07 Aligned_cols=229 Identities=11% Similarity=0.080 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHhhhcccccCCccceehhhcccCc--chhh----------------h---HHHhhcCCCCccHHHHHHH
Q psy7457 11 PQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTP--KKIE----------------H---ILIQRGLSKDTILDNRARR 69 (497)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~--~~~~----------------~---~~~~~~~~~p~n~~~~~~R 69 (497)
|.-|+.+-| |++++.| +|.|+=||-|++.. ++.. + +-.||..-+|.=-+++-.-
T Consensus 252 ~dAYiNLGn-V~ke~~~----~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 252 LDAYINLGN-VYKEARI----FDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred hHHHhhHHH-HHHHHhc----chHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 345665555 6676665 78899999998753 3321 1 2367888899989999999
Q ss_pred HHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy7457 70 LRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLE 149 (497)
Q Consensus 70 A~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaE 149 (497)
|.-++++|+.. +|.++|.+.|.+ .|+.. +..-.||-+|.|+|.++.|+.+|+.+|.-+|+. -+..|=|+.
T Consensus 327 anALkd~G~V~--ea~~cYnkaL~l-~p~ha-----dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~--aaa~nNLa~ 396 (966)
T KOG4626|consen 327 ANALKDKGSVT--EAVDCYNKALRL-CPNHA-----DAMNNLGNIYREQGKIEEATRLYLKALEVFPEF--AAAHNNLAS 396 (966)
T ss_pred HHHHHhccchH--HHHHHHHHHHHh-CCccH-----HHHHHHHHHHHHhccchHHHHHHHHHHhhChhh--hhhhhhHHH
Confidence 99999999999 999999999999 99986 789999999999999999999999999999976 467899999
Q ss_pred HHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHH
Q psy7457 150 VLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTL 229 (497)
Q Consensus 150 L~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l 229 (497)
+|-++|++++||..-+..-|+. |. --|--+-+|..+=.+|+...+-..
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~--------------------------P~------fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIK--------------------------PT------FADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcC--------------------------ch------HHHHHHhcchHHHHhhhHHHHHHH
Confidence 9999999999999888766532 11 124446667777777777764444
Q ss_pred hhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHH
Q psy7457 230 LASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQL 308 (497)
Q Consensus 230 ~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~l 308 (497)
...- .-+| .++| -+ -.+|.+|++.|+-.+|+.-|..-++.....-.+ .-.+
T Consensus 445 y~rAI~~nP-t~Ae--Ah------------------------sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA-~cNl 496 (966)
T KOG4626|consen 445 YTRAIQINP-TFAE--AH------------------------SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA-YCNL 496 (966)
T ss_pred HHHHHhcCc-HHHH--HH------------------------hhHHHHhhccCCcHHHHHHHHHHHccCCCCchh-hhHH
Confidence 3222 3444 5677 67 899999999999999999999888876644333 5566
Q ss_pred HHHHHH
Q psy7457 309 AETYEK 314 (497)
Q Consensus 309 AeCy~~ 314 (497)
+-|+.-
T Consensus 497 lh~lq~ 502 (966)
T KOG4626|consen 497 LHCLQI 502 (966)
T ss_pred HHHHHH
Confidence 666443
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=5.5e-06 Score=72.68 Aligned_cols=107 Identities=15% Similarity=0.032 Sum_probs=96.4
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
.++...+|++...++.++..+.+.|++. +|++.|++++.. .|.+. .+...+|..|...|+..+|+..++.++
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~~~~-~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQGRYD--EALKLFQLLAAY-DPYNS-----RYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcccHH--HHHHHHHHHHHh-CCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666789999999999999999999999 999999999999 88875 688899999999999999999999999
Q ss_pred HHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 133 QYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 133 ~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
...|+. +.....++.+|...|++++|++++++...
T Consensus 79 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 79 ALDPDD--PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred hcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 988864 56667788999999999999999987664
No 36
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.35 E-value=5.1e-05 Score=86.69 Aligned_cols=108 Identities=10% Similarity=-0.028 Sum_probs=90.7
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy7457 51 ILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAI 130 (497)
Q Consensus 51 ~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~ 130 (497)
++.++...+|.+...+...|.++...|++. +|++.|+++++. -|.+. ++...+|.++.+.|+.++|+..+++
T Consensus 37 ~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~--~A~~~~~~al~~-~P~~~-----~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 37 VYNRYRVHMQLPARGYAAVAVAYRNLKQWQ--NSLTLWQKALSL-EPQND-----DYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444457788888899999999999999 999999999999 88885 5677899999999999999999999
Q ss_pred HHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 131 AFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 131 a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
++..+|+... ...++-++...+++++|+..+++...
T Consensus 109 ~l~~~P~~~~---~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 109 LVSGAPDKAN---LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHhCCCCHH---HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999987755 66778888999999999999988664
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=1.1e-05 Score=77.61 Aligned_cols=176 Identities=11% Similarity=0.031 Sum_probs=132.1
Q ss_pred CCCCChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCcc---HHHHHHHHHHHHHhCCcchh
Q psy7457 6 QSYENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTI---LDNRARRLRLCDEIGLKNRG 82 (497)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n---~~~~~~RA~Ly~elG~~~~~ 82 (497)
++...|+.++..+...+. ..++++|+=.|.++++. +|++ .+.++..+.+|.+.|++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~~~~~-------------~p~~~~~~~a~~~la~~~~~~~~~~-- 87 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALD-----SGDYTEAIKYFEALESR-------------YPFSPYAEQAQLDLAYAYYKSGDYA-- 87 (235)
T ss_pred cccCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-------------CCCchhHHHHHHHHHHHHHhcCCHH--
Confidence 455667777777765544 44566777777777664 3443 468899999999999999
Q ss_pred HHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHccCCCC-hhHH---------
Q psy7457 83 FVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTA--------RNFPQAASSLAIAFQYSAHLIR-PEHC--------- 144 (497)
Q Consensus 83 ~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~--------~~~~~Ai~~le~a~~~~~~~f~-~~~v--------- 144 (497)
.|++.|+++++. .|.+.. .....-.++..|... |+.++|++.+++++..+|+... +..+
T Consensus 88 ~A~~~~~~~l~~-~p~~~~--~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~ 164 (235)
T TIGR03302 88 EAIAAADRFIRL-HPNHPD--ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR 164 (235)
T ss_pred HHHHHHHHHHHH-CcCCCc--hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH
Confidence 999999999999 998762 112445667777765 8899999999999999998632 2222
Q ss_pred -----HHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhh
Q psy7457 145 -----NLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVH 219 (497)
Q Consensus 145 -----NiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~ 219 (497)
-.++++|+..|+|.+|+..+....... |+.. ...+....+|.++.+
T Consensus 165 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~---~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 165 LAGKELYVARFYLKRGAYVAAINRFETVVENY--------------------------PDTP---ATEEALARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC--------------------------CCCc---chHHHHHHHHHHHHH
Confidence 146788999999999999988866421 3321 146889999999999
Q ss_pred cCCCCchhHHhhcc
Q psy7457 220 LRSETQFPTLLASL 233 (497)
Q Consensus 220 Lg~~~~~~~l~~~l 233 (497)
+|+.+++...+..|
T Consensus 216 lg~~~~A~~~~~~l 229 (235)
T TIGR03302 216 LGLKDLAQDAAAVL 229 (235)
T ss_pred cCCHHHHHHHHHHH
Confidence 99999988887666
No 38
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=2.1e-05 Score=90.79 Aligned_cols=158 Identities=12% Similarity=0.139 Sum_probs=127.3
Q ss_pred CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 59 KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 59 ~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
-|.|-.+++..|..|+++|+.. +|.+.|+++++. -|+|. .+++.+|-.|.+. ++++|++++.+|+.+
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~--ka~~~yer~L~~-D~~n~-----~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENK--KLKGVWERLVKA-DRDNP-----EIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChH--HHHHHHHHHHhc-CcccH-----HHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 3344489999999999999999 999999999999 89986 7999999999999 999999999999988
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHh
Q psy7457 139 IRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLV 218 (497)
Q Consensus 139 f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll 218 (497)
|+..++|..+.++-...|.-. |++. |.-.++-
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~--------------------------~~d~------d~f~~i~---- 210 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYN--------------------------SDDF------DFFLRIE---- 210 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcC--------------------------cccc------hHHHHHH----
Confidence 888999999999888888411 2322 2211210
Q ss_pred hcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCC
Q psy7457 219 HLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEK 298 (497)
Q Consensus 219 ~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~ 298 (497)
..+.. .-....+.+ ++ .++=++|.+.+.|.+++.+|..+++.+.
T Consensus 211 --------~ki~~--~~~~~~~~~--~~------------------------~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 211 --------RKVLG--HREFTRLVG--LL------------------------EDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred --------HHHHh--hhccchhHH--HH------------------------HHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 11111 112334566 77 8888999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHH
Q psy7457 299 YNQPGVWKQLAETYEK 314 (497)
Q Consensus 299 y~~~~vwl~lAeCy~~ 314 (497)
.|..+ ...+|+||++
T Consensus 255 ~n~~a-~~~l~~~y~~ 269 (906)
T PRK14720 255 KNNKA-REELIRFYKE 269 (906)
T ss_pred cchhh-HHHHHHHHHH
Confidence 99988 8999999877
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.22 E-value=8.9e-05 Score=73.58 Aligned_cols=178 Identities=15% Similarity=0.057 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChh
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPE 142 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~ 142 (497)
.+.+.+++.=|-+-|+.. +|.+-+++.|++ -|.+-. .=--+|.+|-..|+.+.|-+.|++|+.-.|... .
T Consensus 35 a~arlqLal~YL~~gd~~--~A~~nlekAL~~-DPs~~~-----a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--d 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYA--QAKKNLEKALEH-DPSYYL-----AHLVRAHYYQKLGENDLADESYRKALSLAPNNG--D 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CcccHH-----HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--c
Confidence 578899999999999999 999999999999 787753 333689999999999999999999999999764 4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCC
Q psy7457 143 HCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRS 222 (497)
Q Consensus 143 ~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~ 222 (497)
.+|=+---+..+|+|++|...+.+...- | .++-|-+----+|+|-++.|+
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~---------------------------P---~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALAD---------------------------P---AYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhC---------------------------C---CCCCcchhhhhhHHHHhhcCC
Confidence 6889999999999999999999886631 1 122366666789999999999
Q ss_pred CCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCCh
Q psy7457 223 ETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQ 301 (497)
Q Consensus 223 ~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~ 301 (497)
.+.++..++.- +.++ .++- -. ++.|...++.|.|..|.-+++.....-..+-
T Consensus 155 ~~~A~~~l~raL~~dp-~~~~--~~------------------------l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A 207 (250)
T COG3063 155 FDQAEEYLKRALELDP-QFPP--AL------------------------LELARLHYKAGDYAPARLYLERYQQRGGAQA 207 (250)
T ss_pred chhHHHHHHHHHHhCc-CCCh--HH------------------------HHHHHHHHhcccchHHHHHHHHHHhcccccH
Confidence 99988877555 5554 4444 55 8999999999999999999999999888777
Q ss_pred HHHHHH
Q psy7457 302 PGVWKQ 307 (497)
Q Consensus 302 ~~vwl~ 307 (497)
.++|+-
T Consensus 208 ~sL~L~ 213 (250)
T COG3063 208 ESLLLG 213 (250)
T ss_pred HHHHHH
Confidence 777763
No 40
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=1.1e-05 Score=73.56 Aligned_cols=108 Identities=14% Similarity=-0.016 Sum_probs=96.4
Q ss_pred hhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy7457 49 EHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSL 128 (497)
Q Consensus 49 ~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~l 128 (497)
|.++.+|...||++ .+.++..+.+.|++. .|++.|++++.. -|.+. ++...+|.++...|+.++|+..|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~--~A~~~~~~al~~-~P~~~-----~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYS--RAVIDFSWLVMA-QPWSW-----RAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHH--HHHHHHHHHHHc-CCCcH-----HHHHHHHHHHHHHhhHHHHHHHH
Confidence 66788999999986 667999999999999 999999999999 88875 78899999999999999999999
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 129 AIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 129 e~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
..++.-.|+. ..-..-++-.+..+|++++|+..+.+...
T Consensus 82 ~~Al~l~p~~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 82 GHALMLDASH--PEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHhcCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988854 45567777889999999999999988775
No 41
>KOG4626|consensus
Probab=98.18 E-value=3.4e-05 Score=85.01 Aligned_cols=195 Identities=11% Similarity=0.074 Sum_probs=132.4
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
..|-+-||.=.+++..-..+|+|++.+. +|+.+|++.+.. .|... .+--.+|-+|.++|.++-||..|++++
T Consensus 242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d--~Avs~Y~rAl~l-rpn~A-----~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 242 EEAVKLDPNFLDAYINLGNVYKEARIFD--RAVSCYLRALNL-RPNHA-----VAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHhhcCCCcchHHHhhHHHHHHHHhcch--HHHHHHHHHHhc-CCcch-----hhccceEEEEeccccHHHHHHHHHHHH
Confidence 4577889999999999999999999999 999999999999 99875 466789999999999999999999999
Q ss_pred HHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHH
Q psy7457 133 QYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSK 212 (497)
Q Consensus 133 ~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~K 212 (497)
+..|.+ ...-|=|+--+-..|+-.+|.+.-++.-+.- |. -.|-.--
T Consensus 314 ~~~P~F--~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------------------------p~------hadam~N 359 (966)
T KOG4626|consen 314 ELQPNF--PDAYNNLANALKDKGSVTEAVDCYNKALRLC--------------------------PN------HADAMNN 359 (966)
T ss_pred hcCCCc--hHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------------------------Cc------cHHHHHH
Confidence 998865 3345555666666688888887766644311 11 1133355
Q ss_pred HHHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHH
Q psy7457 213 FVITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVL 292 (497)
Q Consensus 213 LgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~ 292 (497)
||...-..|.++++-.++..-.+-.-+++. -+ ..+|..|++.|++.+|+..|..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aa--a~------------------------nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAA--AH------------------------NNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhh--hh------------------------hhHHHHHHhcccHHHHHHHHHH
Confidence 677666667777766554222111113333 33 5556666666666666666655
Q ss_pred HhcCCCCChHHHHHHHHHHHHHhh
Q psy7457 293 LVSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 293 L~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
.+.-...--.+ +..+|..|++++
T Consensus 414 alrI~P~fAda-~~NmGnt~ke~g 436 (966)
T KOG4626|consen 414 ALRIKPTFADA-LSNMGNTYKEMG 436 (966)
T ss_pred HHhcCchHHHH-HHhcchHHHHhh
Confidence 55544322222 344455554443
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.16 E-value=8e-05 Score=78.78 Aligned_cols=244 Identities=9% Similarity=-0.001 Sum_probs=142.0
Q ss_pred HhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCcc-HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC
Q psy7457 22 LSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTI-LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD 100 (497)
Q Consensus 22 ~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n-~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~ 100 (497)
.++...+..+++++...|.++. ...|.+ ......++.++-+.|++. .|++.++++++. .|.+.
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~-------------~~~p~~~l~~~~~~a~l~l~~~~~~--~Al~~l~~l~~~-~P~~~ 187 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAA-------------ELAGNDNILVEIARTRILLAQNELH--AARHGVDKLLEM-APRHK 187 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-------------HhCCcCchHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCCCH
Confidence 3455555556666665555543 334554 466777899999999999 999999999999 99886
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHH-HHHHHH---HhhccHHHHHHHHHHhchheeeecc
Q psy7457 101 PQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCN-LYLEVL---LELKRYETCVEVLRRFANIEITYFK 176 (497)
Q Consensus 101 ~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vN-iLaEL~---i~~k~y~~al~~I~~~~~~~l~~~~ 176 (497)
.+.+-++.+|.+.|+.+.|++.+....+.... +..+.. +-...+ +..+..+++++.+...-.. +..
T Consensus 188 -----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~--~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~-~p~-- 257 (409)
T TIGR00540 188 -----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF--DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN-QPR-- 257 (409)
T ss_pred -----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-CCH--
Confidence 79999999999999999999999988876421 222221 111111 2333444444444443321 000
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccc-cchhhhhHHHHH
Q psy7457 177 LFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGT-ITVYLDIAEALI 254 (497)
Q Consensus 177 ~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D-~~Ly~~~~~~~~ 254 (497)
..|+ -+.++.-++..++..|+.+.+..++... ...|.+..- ..++ ......-
T Consensus 258 -------------------~~~~------~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l-~~~~~l~ 311 (409)
T TIGR00540 258 -------------------HRRH------NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLC-LPIPRLK 311 (409)
T ss_pred -------------------HHhC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHH-HHhhhcC
Confidence 0012 1345555555666666666655555444 322322210 0011 0001000
Q ss_pred HHH---HHHHHHHhh------h--hhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhh
Q psy7457 255 QEH---YEAYAVQFK------E--LVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSEC 317 (497)
Q Consensus 255 ~~~---~~~~~~~~~------~--~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~ 317 (497)
..+ ....+...+ . .+..-.|..+...|.|.+|.++|+.....+...++.....+|+.+.+++.
T Consensus 312 ~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~ 385 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD 385 (409)
T ss_pred CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC
Confidence 111 112222222 2 24478899999999999999999953333333455557799999988773
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.15 E-value=0.00012 Score=74.36 Aligned_cols=103 Identities=19% Similarity=0.154 Sum_probs=91.1
Q ss_pred CCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 57 LSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 57 ~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
++++.....++.|+.+|...|+.. .|+..|++.++. .|.+. .+...++.+|...|+++.|++.|+++++..|
T Consensus 58 ~~~~~~a~~~~~~g~~~~~~g~~~--~A~~~~~~Al~l-~P~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P 129 (296)
T PRK11189 58 LTDEERAQLHYERGVLYDSLGLRA--LARNDFSQALAL-RPDMA-----DAYNYLGIYLTQAGNFDAAYEAFDSVLELDP 129 (296)
T ss_pred CCcHhhHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHc-CCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 556667899999999999999999 999999999999 89875 6888999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 137 HLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 137 ~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
+.. .-..-++..+...|+|++|++.+++...
T Consensus 130 ~~~--~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 130 TYN--YAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 752 2345578888999999999999998764
No 44
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.14 E-value=0.00046 Score=81.82 Aligned_cols=95 Identities=8% Similarity=0.032 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc--cCCCC
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS--AHLIR 140 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~--~~~f~ 140 (497)
...+---...|.+.|+.. .|.+.|..+.+.-.++|. .....|...|.+.|++++|+++|+...... |+
T Consensus 472 ~~tynsLI~~y~k~G~vd--~A~~vf~eM~~~Gv~Pdv-----vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD--- 541 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVD--AMFEVFHEMVNAGVEANV-----HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD--- 541 (1060)
T ss_pred HHHHHHHHHHHHhCcCHH--HHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC---
Confidence 333444445555555555 555555555543122221 233444555555566666665555554422 22
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHh
Q psy7457 141 PEHCNLYLEVLLELKRYETCVEVLRRF 167 (497)
Q Consensus 141 ~~~vNiLaEL~i~~k~y~~al~~I~~~ 167 (497)
..-.|.++..|.+.|++++|.+++...
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 233455555555555555555555443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.14 E-value=7.2e-05 Score=79.14 Aligned_cols=189 Identities=10% Similarity=0.049 Sum_probs=136.8
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIA 131 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a 131 (497)
+.++....|...-++.-.|+.+.+.|++. +|.+.|++..+. .|.+. +.+-...|+++.+.|+.++|.+.++..
T Consensus 107 l~~~~~~~~~~~~~~llaA~aa~~~g~~~--~A~~~l~~a~~~-~p~~~----l~~~~~~a~l~l~~~~~~~Al~~l~~l 179 (409)
T TIGR00540 107 IAKNADHAAEPVLNLIKAAEAAQQRGDEA--RANQHLEEAAEL-AGNDN----ILVEIARTRILLAQNELHAARHGVDKL 179 (409)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCcCc----hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555667777888888899999999999 999999999998 88774 123344599999999999999999999
Q ss_pred HHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhH
Q psy7457 132 FQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILS 211 (497)
Q Consensus 132 ~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~ 211 (497)
.+.+|+.- .-+-+++.+++..|+|+.+++.+.+..+... .++.- ..+++.
T Consensus 180 ~~~~P~~~--~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~------------------------~~~~~----~~~l~~ 229 (409)
T TIGR00540 180 LEMAPRHK--EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL------------------------FDDEE----FADLEQ 229 (409)
T ss_pred HHhCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC------------------------CCHHH----HHHHHH
Confidence 99998763 5688999999999999999998887664210 01111 235566
Q ss_pred HHHHHHhhcCCCCchhHHhhcc-ccCcccc-cccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHH
Q psy7457 212 KFVITLVHLRSETQFPTLLASL-KFDVEMY-GTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQV 289 (497)
Q Consensus 212 KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~-~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~ 289 (497)
.....++..+..+.....+... ...|+.. .+.+++ +-.|.++...|.+++|++.
T Consensus 230 ~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~------------------------~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 230 KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK------------------------IALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH------------------------HHHHHHHHHCCChHHHHHH
Confidence 6666666555544433333333 3444321 122366 8999999999999999999
Q ss_pred HHHHhcCCCCCh
Q psy7457 290 LVLLVSSEKYNQ 301 (497)
Q Consensus 290 l~~L~~~~~y~~ 301 (497)
+...++....+.
T Consensus 286 l~~~l~~~pd~~ 297 (409)
T TIGR00540 286 IFDGLKKLGDDR 297 (409)
T ss_pred HHHHHhhCCCcc
Confidence 999999655443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.00015 Score=74.93 Aligned_cols=248 Identities=14% Similarity=0.115 Sum_probs=174.7
Q ss_pred cCCCCCChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhH
Q psy7457 4 TGQSYENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGF 83 (497)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~ 83 (497)
+.|+-+=|-.|+.=+|.+|++ +||.|+=-|--+.. -||.-++..+.-..|++.-|+.. +
T Consensus 29 ~~qa~~lsr~Yv~GlNfLLs~------Q~dKAvdlF~e~l~-------------~d~~t~e~~ltLGnLfRsRGEvD--R 87 (389)
T COG2956 29 QDQANRLSRDYVKGLNFLLSN------QPDKAVDLFLEMLQ-------------EDPETFEAHLTLGNLFRSRGEVD--R 87 (389)
T ss_pred HHHHhhccHHHHhHHHHHhhc------CcchHHHHHHHHHh-------------cCchhhHHHHHHHHHHHhcchHH--H
Confidence 345666789999999999985 56666555544444 47788999999999999999999 9
Q ss_pred HHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHH
Q psy7457 84 VLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEV 163 (497)
Q Consensus 84 Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~ 163 (497)
|+.--|.++.. |.-+++.=.-++-+||+-|...|=++.|-++|....+. +.|.-..+.-|+.+|=+.+.|++||++
T Consensus 88 AIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--~efa~~AlqqLl~IYQ~treW~KAId~ 163 (389)
T COG2956 88 AIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--GEFAEGALQQLLNIYQATREWEKAIDV 163 (389)
T ss_pred HHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--hhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999988 88777766678899999999999999999988876652 346678899999999999999999999
Q ss_pred HHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhccccCccccccc
Q psy7457 164 LRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASLKFDVEMYGTI 243 (497)
Q Consensus 164 I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~ 243 (497)
-.+... ++ |..+ ++-++.+...|-+...+ +.++.. -.
T Consensus 164 A~~L~k--~~------------------------~q~~--------~~eIAqfyCELAq~~~~-------~~~~d~--A~ 200 (389)
T COG2956 164 AERLVK--LG------------------------GQTY--------RVEIAQFYCELAQQALA-------SSDVDR--AR 200 (389)
T ss_pred HHHHHH--cC------------------------Cccc--------hhHHHHHHHHHHHHHhh-------hhhHHH--HH
Confidence 888764 21 2222 22222222222111110 111110 00
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCccc
Q psy7457 244 TVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLSGVVV 323 (497)
Q Consensus 244 ~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~~~~~ 323 (497)
+++ ++++|++=.- -+.-.-.|+.++..|+|+.|.+-|+.....+.-=.+.|--++.+||.+++..
T Consensus 201 ~~l----~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~----- 265 (389)
T COG2956 201 ELL----KKALQADKKC------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP----- 265 (389)
T ss_pred HHH----HHHHhhCccc------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH-----
Confidence 111 2223322000 0111667889999999999999999888776655888899999999999832
Q ss_pred ccccCCCchHHHHHHHhhh
Q psy7457 324 STVDTGSGSWWFQSMSSAM 342 (497)
Q Consensus 324 ~~~d~~~~~~w~~~~~~~~ 342 (497)
+-|..+++.++
T Consensus 266 --------~~~~~fL~~~~ 276 (389)
T COG2956 266 --------AEGLNFLRRAM 276 (389)
T ss_pred --------HHHHHHHHHHH
Confidence 23777777655
No 47
>KOG1840|consensus
Probab=98.02 E-value=0.00011 Score=80.57 Aligned_cols=263 Identities=15% Similarity=0.113 Sum_probs=167.8
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCCh---hhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDP---QTILDLSTRAAHVYHTARNFPQAASSLA 129 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~---~~~~~~~k~LA~~Y~e~~~~~~Ai~~le 129 (497)
.+-+.++|.-+...-.-+..|...|++. +|...+++.++. +-...| ...-..++.+|.+|..++++.+|+.+|+
T Consensus 189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e--~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 189 KGLGDEDPERLRTLRNLAEMYAVQGRLE--KAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYE 265 (508)
T ss_pred HhcccCCchHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3456788888888888999999999999 999999999998 311111 1122566779999999999999999999
Q ss_pred HHHHHccCCCCh------hHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCC
Q psy7457 130 IAFQYSAHLIRP------EHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNL 203 (497)
Q Consensus 130 ~a~~~~~~~f~~------~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l 203 (497)
+|+.-.-+.|+- .-+|=|+.+|...|+|.+|-..+++..++.-. ++...
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-----------------------~~~~~-- 320 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-----------------------LLGAS-- 320 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-----------------------hhccC--
Confidence 999977555543 22677888999999999999999998875321 11111
Q ss_pred CCCcchhHH---HHHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q psy7457 204 VPPPEILSK---FVITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQE 280 (497)
Q Consensus 204 ~lPiDLr~K---LgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~ 280 (497)
+.++..- ++...-+++..+++..+++.. .+-+-+ .+ +...-.+..+| -.+|+.|...
T Consensus 321 --~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a---l~i~~~--~~-g~~~~~~a~~~------------~nl~~l~~~~ 380 (508)
T KOG1840|consen 321 --HPEVAAQLSELAAILQSMNEYEEAKKLLQKA---LKIYLD--AP-GEDNVNLAKIY------------ANLAELYLKM 380 (508)
T ss_pred --hHHHHHHHHHHHHHHHHhcchhHHHHHHHHH---HHHHHh--hc-cccchHHHHHH------------HHHHHHHHHh
Confidence 3333332 344455666666666665433 111111 11 22222333334 9999999999
Q ss_pred ccHHHHHHHHHHHhcCC-------CCChHHHHHHHHHHHHHhhhccCcccccccCCCchHHHHHHHhh-hhhcccccc-c
Q psy7457 281 HYEAYAVQVLVLLVSSE-------KYNQPGVWKQLAETYEKSECLSGVVVSTVDTGSGSWWFQSMSSA-MCSTVLIKD-S 351 (497)
Q Consensus 281 g~y~~Al~~l~~L~~~~-------~y~~~~vwl~lAeCy~~l~~l~~~~~~~~d~~~~~~w~~~~~~~-~~~~~~~~~-~ 351 (497)
|.|.+|.++|...+.-. .+.-+-+.-.+|.-|.+++ +-+||..++.++ +-.+.|..+ .
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-------------~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-------------KYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-------------ccchHHHHHHHHHHHHHHhCCCCC
Confidence 99999999998766533 2222223344555556666 556787777633 222444444 2
Q ss_pred HHHHhhcccccccccccc-CCcchhHHHH
Q psy7457 352 TEHLDQLSLDATTVLYKT-GHIPHAYQLF 379 (497)
Q Consensus 352 ~~~l~~~~l~~~~~~~~~-~~~~~ay~~~ 379 (497)
.-.=.+..| ++.|-. |++..|-.+.
T Consensus 448 ~~~~~~~nL---~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 448 DVTYTYLNL---AALYRAQGNYEAAEELE 473 (508)
T ss_pred chHHHHHHH---HHHHHHcccHHHHHHHH
Confidence 333344445 344432 5555555444
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=6.7e-05 Score=57.50 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHH
Q psy7457 65 NRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHC 144 (497)
Q Consensus 65 ~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~v 144 (497)
.++.++..+.+.|++. +|++.|+++++. .|.+. .+...+|.+|...++.++|++.++.+....|... .-.
T Consensus 2 ~~~~~a~~~~~~~~~~--~A~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 71 (100)
T cd00189 2 ALLNLGNLYYKLGDYD--EALEYYEKALEL-DPDNA-----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAY 71 (100)
T ss_pred HHHHHHHHHHHHhcHH--HHHHHHHHHHhc-CCccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHH
Confidence 4678899999999999 999999999999 88774 5778899999999999999999999999888654 567
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 145 NLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 145 NiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
..++.++...+++++|.+.+.+..
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 788899999999999999987754
No 49
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.01 E-value=0.00062 Score=80.75 Aligned_cols=265 Identities=6% Similarity=0.001 Sum_probs=146.2
Q ss_pred hhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhc
Q psy7457 39 LSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTA 118 (497)
Q Consensus 39 ~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~ 118 (497)
+++.........++.+-.. | |...+---...|.+.|+.. .|.+-|..+.+.=+++|. .....|...|.+.
T Consensus 416 ~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e--~A~~lf~~M~~~Gl~pD~-----~tynsLI~~y~k~ 485 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDID--GALRVLRLVQEAGLKADC-----KLYTTLISTCAKS 485 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHH--HHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhC
Confidence 4444444444444433322 3 3555555667788999999 999999999987233342 4667888999999
Q ss_pred CCHHHHHHHHHHHHHHc--cCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCC---C---CCCCccccc
Q psy7457 119 RNFPQAASSLAIAFQYS--AHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQ---D---STSGEESNI 190 (497)
Q Consensus 119 ~~~~~Ai~~le~a~~~~--~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~---D---~e~d~~~~~ 190 (497)
|+++.|.++++...+.- |+. .-.|.++..|.+.|++++|++++......-+..+..+.. . ...+.....
T Consensus 486 G~vd~A~~vf~eM~~~Gv~Pdv---vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANV---HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998753 444 446888999999999999999987764311100000000 0 000000000
Q ss_pred cc-cccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHH-HHHHHHHhh-
Q psy7457 191 QI-TNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEH-YEAYAVQFK- 266 (497)
Q Consensus 191 ~~-~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~-~~~~~~~~~- 266 (497)
++ .... ....++.+....-.-|.-++.+.|+.+.+..++..+ ..++..... .|--+...-.+.. ++++..-|.
T Consensus 563 ~lf~eM~-~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~--tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 563 DVLAEMK-AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE--VYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHH-HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 00 0000 000111112223444555677888888888888777 444332222 4400000000111 333333333
Q ss_pred ---------hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhcc
Q psy7457 267 ---------ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 267 ---------~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~ 319 (497)
+..|.-+.++|...|.+++|++++..+....---+..+|..+..+|.+.+.++
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 22455566666666666666666666665543344555666666666544433
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.01 E-value=7.6e-05 Score=71.91 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=99.1
Q ss_pred hHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHH-HHhcCC--HHHHHH
Q psy7457 50 HILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHV-YHTARN--FPQAAS 126 (497)
Q Consensus 50 ~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~-Y~e~~~--~~~Ai~ 126 (497)
..+.++...+|+|.+.+...+.+|...|++. .|++.|.+.++. .|.+. ++.-.+|.+ |...|+ .++|++
T Consensus 60 ~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~--~A~~a~~~Al~l-~P~~~-----~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 60 QALQDKIRANPQNSEQWALLGEYYLWRNDYD--NALLAYRQALQL-RGENA-----ELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3457888889999999999999999999999 999999999999 99885 788899986 678888 599999
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 127 SLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 127 ~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
++.+++...|+. ...+..|+-.+..+|+|++|+...++...
T Consensus 132 ~l~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999975 56789999999999999999999988764
No 51
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.99 E-value=0.00039 Score=70.52 Aligned_cols=196 Identities=11% Similarity=-0.027 Sum_probs=132.7
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
.||+..-.+|-.+.++...|+.. .|.++|.+..+. .|.+.. -.+..--.|-.+...|+++.|++.++.+++.+|+
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~--~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 75 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERP--AAAAKAAAAAQA-LAARAT--ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR 75 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHH-hccCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 38999999999999999999999 999999999999 887742 2234445677889999999999999999999996
Q ss_pred CCChhHHHH---HHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHH
Q psy7457 138 LIRPEHCNL---YLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFV 214 (497)
Q Consensus 138 ~f~~~~vNi---LaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLg 214 (497)
.. ..+++ +..+....++...+.+.+.. . .|..+ ........+|
T Consensus 76 ~~--~a~~~~~~~~~~~~~~~~~~~~~~~l~~----~-------------------------~~~~~---~~~~~~~~~a 121 (355)
T cd05804 76 DL--LALKLHLGAFGLGDFSGMRDHVARVLPL----W-------------------------APENP---DYWYLLGMLA 121 (355)
T ss_pred cH--HHHHHhHHHHHhcccccCchhHHHHHhc----c-------------------------CcCCC---CcHHHHHHHH
Confidence 53 22221 12222223344444443332 0 01110 0234455677
Q ss_pred HHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHH
Q psy7457 215 ITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLL 293 (497)
Q Consensus 215 I~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L 293 (497)
.++...|+.+.+...+... ..+|.+ .. .+ .-+|.+|.+.|.+++|+.+|...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~-~~--~~------------------------~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDD-AW--AV------------------------HAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC-cH--HH------------------------HHHHHHHHHcCCHHHHHHHHHhh
Confidence 7888888888877777666 554433 33 55 77888888888888888888877
Q ss_pred hcCCCCC---hHHHHHHHHHHHHHhhhcc
Q psy7457 294 VSSEKYN---QPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 294 ~~~~~y~---~~~vwl~lAeCy~~l~~l~ 319 (497)
+....-+ ....|..+|.||...+..+
T Consensus 175 l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 175 RDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred hhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 7654322 2335777888877755433
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.97 E-value=0.0004 Score=80.28 Aligned_cols=210 Identities=12% Similarity=0.031 Sum_probs=142.1
Q ss_pred hcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7457 55 RGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQY 134 (497)
Q Consensus 55 ~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~ 134 (497)
...-.|.-.+..+.++.+.-+.|++. .|++.|+++++. .|.+.+ .+-.++.+|...|+.++|+..+++++
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~--~Al~~L~qaL~~-~P~~~~-----av~dll~l~~~~G~~~~A~~~~eka~-- 95 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTA--PVLDYLQEESKA-GPLQSG-----QVDDWLQIAGWAGRDQEVIDVYERYQ-- 95 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHH--HHHHHHHHHHhh-Cccchh-----hHHHHHHHHHHcCCcHHHHHHHHHhc--
Confidence 33445666789999999999999999 999999999999 998853 22389999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHH
Q psy7457 135 SAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFV 214 (497)
Q Consensus 135 ~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLg 214 (497)
.|..+....+-.++.+|...|+|.+|+++.++..... |++. ++..-|+
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------------------------P~n~------~~l~gLa 143 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------------------------PTNP------DLISGMI 143 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------------------CCCH------HHHHHHH
Confidence 5556667777778999999999999999999876421 4442 4444555
Q ss_pred HHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHH---HHHHHHHHHhh---------hhhhHHHHHHHHhcc
Q psy7457 215 ITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQ---EHYEAYAVQFK---------ELVYLDIAEALIQEH 281 (497)
Q Consensus 215 I~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~---~~~~~~~~~~~---------~~~~ldvaeAl~e~g 281 (497)
.....++..+++...+..+ ..+++ . .++ .+-..|. ..+..++..|+ +.++++...++...|
T Consensus 144 ~~y~~~~q~~eAl~~l~~l~~~dp~---~--~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 144 MTQADAGRGGVVLKQATELAERDPT---V--QNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHhhcCCHHHHHHHHHHhcccCcc---h--HHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 5566666666666666655 44443 2 221 2223333 22333444444 346677777777777
Q ss_pred cHHHHHHHHHHHhcCCC-CChHH-HHHHHHHHHHHh
Q psy7457 282 YEAYAVQVLVLLVSSEK-YNQPG-VWKQLAETYEKS 315 (497)
Q Consensus 282 ~y~~Al~~l~~L~~~~~-y~~~~-vwl~lAeCy~~l 315 (497)
-..-|+++... .+. |+... .|+.+...=+.+
T Consensus 218 ~~~~a~~l~~~---~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 218 IVEPALRLAKE---NPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred CcHHHHHHHHh---CccccCHHHHHHHHHHHHHHHH
Confidence 77777765532 222 44222 455555554443
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.93 E-value=0.00048 Score=78.29 Aligned_cols=203 Identities=11% Similarity=0.028 Sum_probs=148.4
Q ss_pred hHHHhhcCCCCccH-----HHHHHHHHHHHHhCCcch-hHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHH
Q psy7457 50 HILIQRGLSKDTIL-----DNRARRLRLCDEIGLKNR-GFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQ 123 (497)
Q Consensus 50 ~~~~~~~~~~p~n~-----~~~~~RA~Ly~elG~~~~-~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~ 123 (497)
|-+.-+++++|... +.+-+--++....|...+ ..|+...+.+.+. +|++. +..+.||++-...|+.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~La~i~~~~g~~~e 104 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRR-YPHTE-----LFQVLVARALEAAHRSDE 104 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-ccccH-----HHHHHHHHHHHHcCCcHH
Confidence 33455666666332 233333455666666661 1345555666677 89885 899999999999999999
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCC
Q psy7457 124 AASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNL 203 (497)
Q Consensus 124 Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l 203 (497)
|..+|+.+++..|++. .-.--++-.+.+.+++++|+.++++.-..- |++.
T Consensus 105 a~~~l~~~~~~~Pd~~--~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------------------------p~~~-- 154 (694)
T PRK15179 105 GLAVWRGIHQRFPDSS--EAFILMLRGVKRQQGIEAGRAEIELYFSGG--------------------------SSSA-- 154 (694)
T ss_pred HHHHHHHHHhhCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHhhcC--------------------------CCCH--
Confidence 9999999999999873 334456777888999999999998866421 5654
Q ss_pred CCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccc
Q psy7457 204 VPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHY 282 (497)
Q Consensus 204 ~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~ 282 (497)
+....+|+|+..+|..+++..+++.+ ..+| +..+ .+ ...|.+|++.|.
T Consensus 155 ----~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~--~~------------------------~~~a~~l~~~G~ 203 (694)
T PRK15179 155 ----REILLEAKSWDEIGQSEQADACFERLSRQHP-EFEN--GY------------------------VGWAQSLTRRGA 203 (694)
T ss_pred ----HHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHH--HH------------------------HHHHHHHHHcCC
Confidence 77899999999999999999999888 6555 4445 77 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHHhhhcc
Q psy7457 283 EAYAVQVLVLLVSSEKYNQP---GVWKQLAETYEKSECLS 319 (497)
Q Consensus 283 y~~Al~~l~~L~~~~~y~~~---~vwl~lAeCy~~l~~l~ 319 (497)
.++|...|.+.++....-.- .....++.-|--++.|+
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (694)
T PRK15179 204 LWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999877654322 22223333344455555
No 54
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00018 Score=60.68 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC-CCh
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL-IRP 141 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~-f~~ 141 (497)
.+.++..+..+.+.|++. +|++.|.++++. .|.+.. ..+..-.+|.+|.+.|++..|++.|+.+...+|+. +..
T Consensus 2 ~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYA--DAIQAFQAFLKK-YPKSTY--APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred cHHHHHHHHHHHHcCCHH--HHHHHHHHHHHH-CCCccc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence 467899999999999999 999999999999 887631 12466779999999999999999999999999875 344
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 142 EHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 142 ~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
..+..++..+...+++.+|++.+.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 5588899999999999999999988664
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.90 E-value=0.00071 Score=76.24 Aligned_cols=185 Identities=11% Similarity=0.047 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH-------------------------------HH
Q psy7457 62 ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS-------------------------------TR 110 (497)
Q Consensus 62 n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~-------------------------------k~ 110 (497)
|.-.+---...|.+.|+.. +|++.|+++++. -+..+..++..++ ..
T Consensus 188 ~~~t~n~li~~~~~~g~~~--~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYR--EAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred CeeeHHHHHHHHHHCcCHH--HHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 3444455566788899999 999999999876 3333323332222 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccc
Q psy7457 111 AAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNI 190 (497)
Q Consensus 111 LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~ 190 (497)
|...|.+.|++++|.++++..-. ++.++ .|.++..|.+.|++++|+++++.....
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~--~~~vt---~n~li~~y~~~g~~~eA~~lf~~M~~~-------------------- 319 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPE--KTTVA---WNSMLAGYALHGYSEEALCLYYEMRDS-------------------- 319 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC--CChhH---HHHHHHHHHhCCCHHHHHHHHHHHHHc--------------------
Confidence 34556666666666655554321 22222 355666666666666666665543210
Q ss_pred cccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhh
Q psy7457 191 QITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELV 269 (497)
Q Consensus 191 ~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~ 269 (497)
...|+.. .-.-+.-+..++|..+.+..++..+ ..... .|+..|
T Consensus 320 ----g~~pd~~-------t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~--~d~~~~----------------------- 363 (697)
T PLN03081 320 ----GVSIDQF-------TFSIMIRIFSRLALLEHAKQAHAGLIRTGFP--LDIVAN----------------------- 363 (697)
T ss_pred ----CCCCCHH-------HHHHHHHHHHhccchHHHHHHHHHHHHhCCC--CCeeeh-----------------------
Confidence 0012221 1233444566777777777776555 33322 232355
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHh
Q psy7457 270 YLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKS 315 (497)
Q Consensus 270 ~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l 315 (497)
.-+.++|.+.|..++|.++|..+... +...|..+..+|.+.
T Consensus 364 -~~Li~~y~k~G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 364 -TALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNH 404 (697)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHc
Confidence 77888888888888888888776542 334577777777663
No 56
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.88 E-value=0.0016 Score=75.44 Aligned_cols=120 Identities=11% Similarity=-0.009 Sum_probs=94.4
Q ss_pred ehhhcccCcchhhhHHHhhcCCCCccHHHHHHH--HHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHH
Q psy7457 37 YILSRVRTPKKIEHILIQRGLSKDTILDNRARR--LRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHV 114 (497)
Q Consensus 37 y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~R--A~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~ 114 (497)
-+++.+=........|.++. +|.|...+-.+ |.+|...|++. +|++.|+++++. -|.++ ++...+|..
T Consensus 76 ~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd--~Aiely~kaL~~-dP~n~-----~~l~gLa~~ 145 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD--QALALWQSSLKK-DPTNP-----DLISGMIMT 145 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhh-CCCCH-----HHHHHHHHH
Confidence 34445544445556666666 66667777777 77999999999 999999999999 99885 577788999
Q ss_pred HHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 115 YHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 115 Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
|.+.++.++|++.++++....|.. .+. -.++.++...+++.+|++.+++...
T Consensus 146 y~~~~q~~eAl~~l~~l~~~dp~~-~~~--l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 146 QADAGRGGVVLKQATELAERDPTV-QNY--MTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HhhcCCHHHHHHHHHHhcccCcch-HHH--HHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999999999999999972 222 5556666667788779999998775
No 57
>KOG1155|consensus
Probab=97.87 E-value=0.0008 Score=72.42 Aligned_cols=99 Identities=21% Similarity=0.125 Sum_probs=70.4
Q ss_pred hcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcC
Q psy7457 40 SRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTAR 119 (497)
Q Consensus 40 ~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~ 119 (497)
|+.+++..+...+.--+.+| .+|=.-|=-...++++.+.. .|+.-++++....+|.+. -+....|.+++.+.
T Consensus 205 ~~lit~~e~~~~l~~~l~~~-~h~M~~~F~~~a~~el~q~~--e~~~k~e~l~~~gf~~~~-----~i~~~~A~~~y~~r 276 (559)
T KOG1155|consen 205 SELITDIEILSILVVGLPSD-MHWMKKFFLKKAYQELHQHE--EALQKKERLSSVGFPNSM-----YIKTQIAAASYNQR 276 (559)
T ss_pred HHhhchHHHHHHHHhcCccc-chHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCccH-----HHHHHHHHHHhhhh
Confidence 44455443333333334444 44666666777888888888 999999999998788875 57778999999999
Q ss_pred CHHHHHHHHHHHHHHccCCCChhHHHHHH
Q psy7457 120 NFPQAASSLAIAFQYSAHLIRPEHCNLYL 148 (497)
Q Consensus 120 ~~~~Ai~~le~a~~~~~~~f~~~~vNiLa 148 (497)
|+++|++.++.+...-| ++.+++.++.
T Consensus 277 DfD~a~s~Feei~knDP--YRl~dmdlyS 303 (559)
T KOG1155|consen 277 DFDQAESVFEEIRKNDP--YRLDDMDLYS 303 (559)
T ss_pred hHHHHHHHHHHHHhcCC--CcchhHHHHh
Confidence 99999999999988754 3333443333
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.84 E-value=0.00012 Score=70.63 Aligned_cols=107 Identities=9% Similarity=-0.019 Sum_probs=91.2
Q ss_pred CCChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHH-HHHhCCc--chhHH
Q psy7457 8 YENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRL-CDEIGLK--NRGFV 84 (497)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~L-y~elG~~--~~~~A 84 (497)
-.|++-|+.+++..+. ..++++|+-+|.+++.. +|+|.+.+...|.+ |...|+. . +|
T Consensus 70 P~~~~~w~~Lg~~~~~-----~g~~~~A~~a~~~Al~l-------------~P~~~~~~~~lA~aL~~~~g~~~~~--~A 129 (198)
T PRK10370 70 PQNSEQWALLGEYYLW-----RNDYDNALLAYRQALQL-------------RGENAELYAALATVLYYQAGQHMTP--QT 129 (198)
T ss_pred CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHHhcCCCCcH--HH
Confidence 4577788877766553 56777888888877775 89999999999985 6888984 8 99
Q ss_pred HHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCC
Q psy7457 85 LAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIR 140 (497)
Q Consensus 85 l~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~ 140 (497)
.+.+.+.++. -|.+. ++.-.+|..|.+.|++++|+..|+++++..|+..+
T Consensus 130 ~~~l~~al~~-dP~~~-----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALAL-DANEV-----TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHh-CCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999 89885 78899999999999999999999999999988644
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.76 E-value=0.00049 Score=69.83 Aligned_cols=108 Identities=13% Similarity=-0.031 Sum_probs=92.4
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
......+|..+..+...+.++.+.|++. +|.+.+++.++. .|.+. .+...+|.+|.+.|+.++|+..+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~--~A~~~~~~al~~-~p~~~-----~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 104 PLWAPENPDYWYLLGMLAFGLEEAGQYD--RAEEAARRALEL-NPDDA-----WAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred hccCcCCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhh-CCCCc-----HHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 3355678888889999999999999999 999999999999 99885 577899999999999999999999999
Q ss_pred HHccCCCChhHH--HHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 133 QYSAHLIRPEHC--NLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 133 ~~~~~~f~~~~v--NiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
...|........ -.++.+++.+|++++|+.++.+..
T Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 988753222222 258899999999999999998863
No 60
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.0021 Score=61.80 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh
Q psy7457 62 ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP 141 (497)
Q Consensus 62 n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~ 141 (497)
+-+.+++.|.-+-+.|++. +|++.|+++... .|.++ ..-++.=.+|..|...|+..+|+..+++++..||.+-..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~--~Ai~~f~~l~~~-~P~s~--~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYE--EAIKLFEKLIDR-YPNSP--YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HH--HHHHHHHHHHHH--TTST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred CHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHH-CCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 4678999999999999999 999999999999 99986 334667789999999999999999999999999987554
Q ss_pred hHHHHHHHH-HHh-----------hccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcch
Q psy7457 142 EHCNLYLEV-LLE-----------LKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEI 209 (497)
Q Consensus 142 ~~vNiLaEL-~i~-----------~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDL 209 (497)
..+-.+..+ +.. .+..++|+..++.+-+ ..|++. + --+.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~--------------------------~yP~S~-y--~~~A 129 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK--------------------------RYPNSE-Y--AEEA 129 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH--------------------------H-TTST-T--HHHH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH--------------------------HCcCch-H--HHHH
Confidence 444332222 110 1111222222222211 124442 0 1222
Q ss_pred hHHHHHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHH
Q psy7457 210 LSKFVITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQV 289 (497)
Q Consensus 210 r~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~ 289 (497)
+-++.. + ...|.+|- +.||+-|...|.|..|+.-
T Consensus 130 ~~~l~~-------------l---------------------~~~la~~e------------~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 130 KKRLAE-------------L---------------------RNRLAEHE------------LYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHH-------------H---------------------HHHHHHHH------------HHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHH-------------H---------------------HHHHHHHH------------HHHHHHHHHcccHHHHHHH
Confidence 222211 1 11111111 7899999999999999999
Q ss_pred HHHHhcCCCCC--hHHHHHHHHHHHHHhh
Q psy7457 290 LVLLVSSEKYN--QPGVWKQLAETYEKSE 316 (497)
Q Consensus 290 l~~L~~~~~y~--~~~vwl~lAeCy~~l~ 316 (497)
+.-++..-... ....+..++++|.+++
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 99998885544 4447899999999987
No 61
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.00013 Score=73.52 Aligned_cols=215 Identities=12% Similarity=0.067 Sum_probs=139.7
Q ss_pred HHhhhccc---ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCC
Q psy7457 21 VLSQHSIQ---VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITP 97 (497)
Q Consensus 21 ~~~~~~~~---~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P 97 (497)
...+++.. ..+.++|.-||-++-... . . ..++...-..+..|..+.+.+++. .|++.|++.+....-
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~------~-~-~~~~~~Aa~~~~~Aa~~~k~~~~~--~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCY------E-K-LGDKFEAAKAYEEAANCYKKGDPD--EAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH------H-H-TT-HHHHHHHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHH------H-H-cCCHHHHHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHHHh
Confidence 34455553 788999999999987632 1 1 233344444444454444555999 999999999997444
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHccCCCCh----hHHHHHHHHHHhhccHHHHHHHHHHhchhee
Q psy7457 98 DSDPQTILDLSTRAAHVYHTA-RNFPQAASSLAIAFQYSAHLIRP----EHCNLYLEVLLELKRYETCVEVLRRFANIEI 172 (497)
Q Consensus 98 ~d~~~~~~~~~k~LA~~Y~e~-~~~~~Ai~~le~a~~~~~~~f~~----~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l 172 (497)
...+...-.+.+++|++|-+. +++++|++.|+.|.+.+...-.. .-+.=++++++.+++|.+|++...+.....+
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 455677778999999999999 99999999999999988554333 2256789999999999999999988775322
Q ss_pred eeccCCCCCCCCCccccccccccccCCCCCCCCCc---chhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccc---cch
Q psy7457 173 TYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPP---EILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGT---ITV 245 (497)
Q Consensus 173 ~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPi---DLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D---~~L 245 (497)
.. | -+ .. +.-.+.++|+|..|+.-.+...++.. ..+| .+.+ ..+
T Consensus 187 ~~-----------------------~-l~----~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~-~F~~s~E~~~ 237 (282)
T PF14938_consen 187 EN-----------------------N-LL----KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP-SFASSREYKF 237 (282)
T ss_dssp CH-----------------------C-TT----GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST-TSTTSHHHHH
T ss_pred cc-----------------------c-cc----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCCCcHHHHH
Confidence 11 0 00 12 34578899999999987777777665 3332 1211 112
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh--cccHHHHHHHHHHHhcCCC
Q psy7457 246 YLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQ--EHYEAYAVQVLVLLVSSEK 298 (497)
Q Consensus 246 y~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e--~g~y~~Al~~l~~L~~~~~ 298 (497)
. -++-+|+.+ ...+..|+.=|..+...+.
T Consensus 238 ~------------------------~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 238 L------------------------EDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp H------------------------HHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred H------------------------HHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 2 666667654 5677777777766555543
No 62
>KOG1840|consensus
Probab=97.68 E-value=0.00049 Score=75.53 Aligned_cols=221 Identities=13% Similarity=0.083 Sum_probs=158.9
Q ss_pred HHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCC--
Q psy7457 21 VLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPD-- 98 (497)
Q Consensus 21 ~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~-- 98 (497)
.++..=-.+..++||+=.|-+++++-.. --|..+|.=...+.+-|.+|...|.+. .|-..+++.+.. +-+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~-----~~G~~h~~va~~l~nLa~ly~~~GKf~--EA~~~~e~Al~I-~~~~~ 317 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREE-----VFGEDHPAVAATLNNLAVLYYKQGKFA--EAEEYCERALEI-YEKLL 317 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHH-HHHhh
Confidence 3455555678899999999999996432 256778887888888899999999999 888888887776 333
Q ss_pred -CChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhH------HHHHHHHHHhhccHHHHHHHHHHhchhe
Q psy7457 99 -SDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEH------CNLYLEVLLELKRYETCVEVLRRFANIE 171 (497)
Q Consensus 99 -d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~------vNiLaEL~i~~k~y~~al~~I~~~~~~~ 171 (497)
.+....-..+.++|-+|...++++.|+.+|.++++-+...|+-.+ -+=|+++|...|+|++|.+..++.....
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 444566678899999999999999999999999998765554444 4568999999999999999988866432
Q ss_pred eeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhc----cccCcccccccchhh
Q psy7457 172 ITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLAS----LKFDVEMYGTITVYL 247 (497)
Q Consensus 172 l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~----l~e~~ee~~D~~Ly~ 247 (497)
-.... ....+.+.|+.= ||-.+..++....+..+|.- ...=-.+++| +-
T Consensus 398 ~~~~~---------------------~~~~~~~~~l~~---la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~--~~- 450 (508)
T KOG1840|consen 398 RELLG---------------------KKDYGVGKPLNQ---LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD--VT- 450 (508)
T ss_pred Hhccc---------------------CcChhhhHHHHH---HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc--hH-
Confidence 11100 011122336654 44445888888876666421 1010113333 11
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 248 DIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
..|.-+|-+|-..|.|+.|+++...++..
T Consensus 451 --------------------~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 451 --------------------YTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred --------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 23499999999999999999999988843
No 63
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.0001 Score=57.28 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 67 ARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 67 ~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
+.++..+.+.|++. +|++.|+++++. .|.+. ++...+|.+|...|+.++|+..|+++++..|+
T Consensus 1 ~~~a~~~~~~g~~~--~A~~~~~~~l~~-~P~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYD--EAIAAFEQALKQ-DPDNP-----EAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHH--HHHHHHHHHHCC-STTHH-----HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHH--HHHHHHHHHHHH-CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46889999999999 999999999999 88874 79999999999999999999999999999886
No 64
>KOG2002|consensus
Probab=97.66 E-value=0.0017 Score=74.68 Aligned_cols=251 Identities=13% Similarity=0.068 Sum_probs=162.0
Q ss_pred CCCChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHH------HhhcCCCCccHHHHHHHHHHHHHhCCcc
Q psy7457 7 SYENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHIL------IQRGLSKDTILDNRARRLRLCDEIGLKN 80 (497)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~------~~~~~~~p~n~~~~~~RA~Ly~elG~~~ 80 (497)
.+.|++-+-...-++...-.++..||+--.+.=+-...-+.-+.|+ ++-.-+++--.+..+.-+.-|...|++.
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 3567777777777777777888888875544322222222222222 1122334444667889999999999999
Q ss_pred hhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhc----c
Q psy7457 81 RGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELK----R 156 (497)
Q Consensus 81 ~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k----~ 156 (497)
+|...|+..++. .|.+- +=-.--|+++|+..|+++.|+-.+++++..+|+. .+.+-||.-||...+ .
T Consensus 325 --kA~~yY~~s~k~-~~d~~----~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~--~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 325 --KAFKYYMESLKA-DNDNF----VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN--YETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred --HHHHHHHHHHcc-CCCCc----cccccchhHHHHHhchHHHHHHHHHHHHHhCcch--HHHHHHHHhHHHhhhhhhHH
Confidence 999999999999 66651 1123468999999999999999999999999987 577888888888774 5
Q ss_pred HHHHHHHHHHhchheeeeccCCCC-------CCCCCccccccccc-----cccCCCCCCCCCcchhHHHHHHHhhcCCCC
Q psy7457 157 YETCVEVLRRFANIEITYFKLFPQ-------DSTSGEESNIQITN-----YTVPSDPNLVPPPEILSKFVITLVHLRSET 224 (497)
Q Consensus 157 y~~al~~I~~~~~~~l~~~~~~~~-------D~e~d~~~~~~~~~-----~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~ 224 (497)
-++|..++........ .+...| .-++.-....-+.+ +.....+ |+++.=-+|..++++|+..
T Consensus 396 ~d~a~~~l~K~~~~~~--~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i----p~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQTP--VDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI----PPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred HHHHHHHHHHHHhccc--ccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC----CHHHHHhHHHHHHHhcChH
Confidence 5677777776654220 110000 00000000010100 2222335 9999999999999999988
Q ss_pred chhHHhhcc--c----cCcccc--cccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 225 QFPTLLASL--K----FDVEMY--GTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 225 ~~~~l~~~l--~----e~~ee~--~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
.+..+|..- . .++++- ..+++= +-+|.++.+.+.++.|-..|..++.-
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~------------------------YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLK------------------------YNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHH------------------------HHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 877765433 1 233331 112223 67888888888888888888776653
No 65
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.61 E-value=0.00038 Score=60.97 Aligned_cols=80 Identities=11% Similarity=-0.026 Sum_probs=71.1
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
.++...+|.+.+.+..++.+|...|++. .|.+.|+++++. .|.+. +....+|.+|...|+.++|+..++.++
T Consensus 41 ~~~~~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~-~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 41 QLLAAYDPYNSRYWLGLAACCQMLKEYE--EAIDAYALAAAL-DPDDP-----RPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhc-CCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344458999999999999999999999 999999999999 88875 577889999999999999999999999
Q ss_pred HHccCCCC
Q psy7457 133 QYSAHLIR 140 (497)
Q Consensus 133 ~~~~~~f~ 140 (497)
...|+...
T Consensus 113 ~~~p~~~~ 120 (135)
T TIGR02552 113 EICGENPE 120 (135)
T ss_pred Hhccccch
Confidence 99997644
No 66
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.57 E-value=0.0025 Score=67.40 Aligned_cols=180 Identities=10% Similarity=0.063 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLST--RAAHVYHTARNFPQAASSLAIAFQYSAHLIRP 141 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k--~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~ 141 (497)
-++.-=+....+.|++. +|.+.|+++.+. .|.+. +.. ..|++|...|+.++|+..++...+..|+. .
T Consensus 119 l~~llaA~aA~~~g~~~--~A~~~l~~A~~~-~~~~~------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~--~ 187 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEA--RANQHLERAAEL-ADNDQ------LPVEITRVRIQLARNENHAARHGVDKLLEVAPRH--P 187 (398)
T ss_pred HHHHHHHHHHHHCCCHH--HHHHHHHHHHhc-CCcch------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--H
Confidence 33444455668999999 999999999998 77663 222 34899999999999999999999999976 5
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhc-
Q psy7457 142 EHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHL- 220 (497)
Q Consensus 142 ~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~L- 220 (497)
.-+.+++++|+..|+|+++++++.+....... + |... -+++-+.-+.++..
T Consensus 188 ~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~--~---------------------~~~~-----~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 188 EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG--D---------------------EEHR-----AMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--C---------------------HHHH-----HHHHHHHHHHHHHHH
Confidence 77999999999999999999999887752210 0 0110 01221111111221
Q ss_pred -CC--CCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 221 -RS--ETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 221 -g~--~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
+. .+....+.+.+ ...+ +.++ +. .-.|.++...|.+++|.+.+....+.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~-~~~~--~~------------------------~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTR-HQVA--LQ------------------------VAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHh-CCHH--HH------------------------HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11 12222333233 1111 2334 66 89999999999999999999999884
Q ss_pred CCCChHHHHHHHHHH
Q psy7457 297 EKYNQPGVWKQLAET 311 (497)
Q Consensus 297 ~~y~~~~vwl~lAeC 311 (497)
+. ++.+...+++|
T Consensus 293 ~~--~~~l~~l~~~l 305 (398)
T PRK10747 293 QY--DERLVLLIPRL 305 (398)
T ss_pred CC--CHHHHHHHhhc
Confidence 32 44545555555
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.56 E-value=0.0004 Score=58.56 Aligned_cols=108 Identities=11% Similarity=0.009 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHH
Q psy7457 11 PQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQR 90 (497)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~ 90 (497)
|++|++.+...+.+ .+.++|+=.|.+++..+ -++|...+.++..+.++.+.|++. .|++.|++
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~ 64 (119)
T TIGR02795 2 EEAYYDAALLVLKA-----GDYADAIQAFQAFLKKY----------PKSTYAPNAHYWLGEAYYAQGKYA--DAAKAFLA 64 (119)
T ss_pred cHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHC----------CCccccHHHHHHHHHHHHhhccHH--HHHHHHHH
Confidence 67788888777665 45566666666665421 112223578899999999999999 99999999
Q ss_pred HHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 91 YLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 91 il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
+++. .|.+. ....+.-.+|.+|.+.|+.++|+..|..+++.+|+.
T Consensus 65 ~~~~-~p~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 65 VVKK-YPKSP--KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHH-CCCCC--cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 9999 88763 122567889999999999999999999999999974
No 68
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00044 Score=52.86 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=67.2
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
.++....|++...+..++.+|...|++. +|++.|++.++. .|.+. .+...+|.+|...|+.++|...+..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 24 EKALELDPDNADAYYNLAAAYYKLGKYE--EALEDYEKALEL-DPDNA-----KAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhC-CCcch-----hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333446777889999999999999999 999999999999 88875 678899999999999999999999998
Q ss_pred HHccC
Q psy7457 133 QYSAH 137 (497)
Q Consensus 133 ~~~~~ 137 (497)
..+|+
T Consensus 96 ~~~~~ 100 (100)
T cd00189 96 ELDPN 100 (100)
T ss_pred ccCCC
Confidence 87763
No 69
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.56 E-value=0.011 Score=66.88 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh
Q psy7457 62 ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP 141 (497)
Q Consensus 62 n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~ 141 (497)
|...+---...|.+.|+.. +|++.|+++.+.-+++|. .....+...|.+.|++++|.++++.+.+.... .+-
T Consensus 289 ~~vt~n~li~~y~~~g~~~--eA~~lf~~M~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d~ 360 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSE--EALCLYYEMRDSGVSIDQ-----FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDI 360 (697)
T ss_pred ChhHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-CCe
Confidence 3444444445555555555 555555555433122221 12333444455555555555555555443210 112
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHH
Q psy7457 142 EHCNLYLEVLLELKRYETCVEVLRR 166 (497)
Q Consensus 142 ~~vNiLaEL~i~~k~y~~al~~I~~ 166 (497)
.-.|.|+++|.+.|++++|.+++..
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHh
Confidence 3345555555555555555555543
No 70
>KOG2002|consensus
Probab=97.52 E-value=0.00035 Score=80.17 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=114.7
Q ss_pred ChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHH
Q psy7457 10 NPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQ 89 (497)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~ 89 (497)
||-.-.++.|--+++......||..+.=-+-+++. +-.|+.+.||+|.=+=-.-+.++.+-|++. .|.+-|.
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq------~y~kvL~~dpkN~yAANGIgiVLA~kg~~~--~A~dIFs 670 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ------LYGKVLRNDPKNMYAANGIGIVLAEKGRFS--EARDIFS 670 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH------HHHHHHhcCcchhhhccchhhhhhhccCch--HHHHHHH
Confidence 33344556676777777777777332222222222 124445579999988888999999999999 9999999
Q ss_pred HHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 90 RYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 90 ~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
++..- .-... ++.-.+|++|+++|++-.||+.|+.++.++-..=+.+-++-|+..|...+.|++|.+++....+
T Consensus 671 qVrEa-~~~~~-----dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 671 QVREA-TSDFE-----DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHH-HhhCC-----ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99988 54333 3556999999999999999999999999888777889999999999999999999999988765
No 71
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.0041 Score=61.97 Aligned_cols=77 Identities=6% Similarity=-0.042 Sum_probs=67.7
Q ss_pred ccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCC
Q psy7457 61 TILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIR 140 (497)
Q Consensus 61 ~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~ 140 (497)
.+.+..+..|.-+.+.|++. +|++.|++++.. .|.++ ......-.+|..|+..++.++|+..++++++.+|++-.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~--~Ai~~f~~l~~~-yP~s~--~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWK--QAITQLEALDNR-YPFGP--YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCCCh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 45778899999999999999 999999999999 99874 44456679999999999999999999999999998744
Q ss_pred hh
Q psy7457 141 PE 142 (497)
Q Consensus 141 ~~ 142 (497)
-.
T Consensus 105 ~~ 106 (243)
T PRK10866 105 ID 106 (243)
T ss_pred hH
Confidence 33
No 72
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.47 E-value=0.0022 Score=59.65 Aligned_cols=93 Identities=14% Similarity=0.025 Sum_probs=77.8
Q ss_pred CCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 57 LSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 57 ~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
..+|.+...++.++.+|...|++. +|++.|++.++. .|... ....+...+|.+|...|+.++|+..|++++...|
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~--~A~~~~~~al~~-~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYA--EALENYEEALKL-EEDPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHH-hhccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 345677888999999999999999 999999999988 66542 1235889999999999999999999999999988
Q ss_pred CCCChhHHHHHHHHHHhhcc
Q psy7457 137 HLIRPEHCNLYLEVLLELKR 156 (497)
Q Consensus 137 ~~f~~~~vNiLaEL~i~~k~ 156 (497)
.. ......++.+|...++
T Consensus 104 ~~--~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 104 KQ--PSALNNIAVIYHKRGE 121 (172)
T ss_pred cc--HHHHHHHHHHHHHcCC
Confidence 65 4556677888877765
No 73
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.45 E-value=0.00039 Score=54.44 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHcc
Q psy7457 62 ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTAR-NFPQAASSLAIAFQYSA 136 (497)
Q Consensus 62 n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~-~~~~Ai~~le~a~~~~~ 136 (497)
|...+..++..+.+.|++. +|+..|.+.++. .|.+. .+.-.+|.+|...| +.++|++.++.+++-.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~--~A~~~~~~ai~~-~p~~~-----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYE--EAIEYFEKAIEL-DPNNA-----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHH--HHHHHHHHHHHH-STTHH-----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHc-CCCCH-----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5678899999999999999 999999999999 88875 68889999999999 79999999999998766
No 74
>PLN03077 Protein ECB2; Provisional
Probab=97.40 E-value=0.017 Score=66.68 Aligned_cols=90 Identities=11% Similarity=-0.010 Sum_probs=54.6
Q ss_pred HHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy7457 70 LRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLE 149 (497)
Q Consensus 70 A~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaE 149 (497)
...|.+.|+.. +|++.|.++...=.++|. -....+...|...|+.+.|.+++..+...-- .-+..-.|.|+.
T Consensus 260 i~~~~~~g~~~--eAl~lf~~M~~~g~~Pd~-----~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~~d~~~~n~Li~ 331 (857)
T PLN03077 260 ISGYFENGECL--EGLELFFTMRELSVDPDL-----MTITSVISACELLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQ 331 (857)
T ss_pred HHHHHhCCCHH--HHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-ccchHHHHHHHH
Confidence 44566677777 777777777654222232 1233444455566666666666666555321 123455788888
Q ss_pred HHHhhccHHHHHHHHHHh
Q psy7457 150 VLLELKRYETCVEVLRRF 167 (497)
Q Consensus 150 L~i~~k~y~~al~~I~~~ 167 (497)
.|.+.|++++|.+++...
T Consensus 332 ~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHhcCCHHHHHHHHhhC
Confidence 888888888888887664
No 75
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.34 E-value=0.00046 Score=72.27 Aligned_cols=89 Identities=9% Similarity=-0.011 Sum_probs=78.5
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
..+.++|+-+|.+++. -+|++..++..||.+|..+|++. .|+..++++++. .|.+. .+.
T Consensus 15 ~~~~~~Ai~~~~~Al~-------------~~P~~~~a~~~~a~~~~~~g~~~--eAl~~~~~Al~l-~P~~~-----~a~ 73 (356)
T PLN03088 15 DDDFALAVDLYTQAID-------------LDPNNAELYADRAQANIKLGNFT--EAVADANKAIEL-DPSLA-----KAY 73 (356)
T ss_pred cCCHHHHHHHHHHHHH-------------hCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh-CcCCH-----HHH
Confidence 4456677777766666 48999999999999999999999 999999999999 88775 577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
..+|.+|..+|+++.|+..|++++...|+.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 789999999999999999999999999875
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.32 E-value=0.00055 Score=56.19 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=64.7
Q ss_pred hCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhc
Q psy7457 76 IGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELK 155 (497)
Q Consensus 76 lG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k 155 (497)
.|++. .|+..|.+++.. .|.+. + -.++-.+|..|...|+.++|++++.. ....+.. ....=+++..++++|
T Consensus 2 ~~~y~--~Ai~~~~k~~~~-~~~~~-~--~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYE--NAIKYYEKLLEL-DPTNP-N--SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HH--HHHHHHHHHHHH-HCGTH-H--HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT
T ss_pred CccHH--HHHHHHHHHHHH-CCCCh-h--HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhC
Confidence 57888 999999999999 88642 1 14666799999999999999999998 4455533 344447799999999
Q ss_pred cHHHHHHHHHH
Q psy7457 156 RYETCVEVLRR 166 (497)
Q Consensus 156 ~y~~al~~I~~ 166 (497)
+|++|++++.+
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999876
No 77
>PLN03077 Protein ECB2; Provisional
Probab=97.31 E-value=0.011 Score=68.38 Aligned_cols=205 Identities=11% Similarity=0.067 Sum_probs=106.6
Q ss_pred hhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHH---------
Q psy7457 39 LSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLST--------- 109 (497)
Q Consensus 39 ~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k--------- 109 (497)
|++.-...+...+..+-.. +|...+-.-..-|.+.|+.. .|++.|+++... .++|. .++..++.
T Consensus 434 y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~--eA~~lf~~m~~~-~~pd~-~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCF--EALIFFRQMLLT-LKPNS-VTLIAALSACARIGALM 506 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHH--HHHHHHHHHHhC-CCCCH-hHHHHHHHHHhhhchHH
Confidence 4444444444434433222 23334444556788889999 999999999988 66665 23333332
Q ss_pred ----------------------HHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHh
Q psy7457 110 ----------------------RAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRF 167 (497)
Q Consensus 110 ----------------------~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~ 167 (497)
.|-.+|.+.|++++|.+++... .|+.++ .|+++..|...|+.++|++++++.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s---~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVS---WNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhh---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1224455555555555544443 222222 234445555555555555555443
Q ss_pred chheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhccccCcccccccchhh
Q psy7457 168 ANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASLKFDVEMYGTITVYL 247 (497)
Q Consensus 168 ~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~ 247 (497)
... ...|+..++ .-+.-+..|.|..+++..+|+...+.....++++-|
T Consensus 581 ~~~------------------------g~~Pd~~T~-------~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y- 628 (857)
T PLN03077 581 VES------------------------GVNPDEVTF-------ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY- 628 (857)
T ss_pred HHc------------------------CCCCCcccH-------HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH-
Confidence 210 011333311 112234556677666666665441111122343344
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy7457 248 DIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEK 314 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~ 314 (497)
.-+.++|...|.+++|.+++..+--. .++.+|-.+-..+..
T Consensus 629 -----------------------~~lv~~l~r~G~~~eA~~~~~~m~~~---pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 629 -----------------------ACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNACRI 669 (857)
T ss_pred -----------------------HHHHHHHHhCCCHHHHHHHHHHCCCC---CCHHHHHHHHHHHHH
Confidence 77788888888888888887765322 245566666655544
No 78
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.31 E-value=0.016 Score=62.88 Aligned_cols=168 Identities=18% Similarity=0.130 Sum_probs=128.6
Q ss_pred CCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 57 LSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 57 ~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
.++|+-...++.+|.-+.+.|++. .|...++.+++. .|.|. -+.-....++.+.|+.++|++.+.+++...|
T Consensus 300 ~~~~~~~aa~YG~A~~~~~~~~~d--~A~~~l~~L~~~-~P~N~-----~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P 371 (484)
T COG4783 300 RSKRGGLAAQYGRALQTYLAGQYD--EALKLLQPLIAA-QPDNP-----YYLELAGDILLEANKAKEAIERLKKALALDP 371 (484)
T ss_pred HhCccchHHHHHHHHHHHHhcccc--hHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 345788889999999999999999 999999999999 99885 2555678899999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHH
Q psy7457 137 HLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVIT 216 (497)
Q Consensus 137 ~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ 216 (497)
.. .| -.-.|+..|++.|++++|++.|++..+. .|++. +.---|+..
T Consensus 372 ~~-~~-l~~~~a~all~~g~~~eai~~L~~~~~~--------------------------~p~dp------~~w~~LAqa 417 (484)
T COG4783 372 NS-PL-LQLNLAQALLKGGKPQEAIRILNRYLFN--------------------------DPEDP------NGWDLLAQA 417 (484)
T ss_pred Cc-cH-HHHHHHHHHHhcCChHHHHHHHHHHhhc--------------------------CCCCc------hHHHHHHHH
Confidence 87 33 3445899999999999999999998851 13332 222234443
Q ss_pred HhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 217 LVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 217 ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
.=.+|+..+ -. .--||.|.=.|.+++|+.++....+-
T Consensus 418 y~~~g~~~~-------------------a~------------------------~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 418 YAELGNRAE-------------------AL------------------------LARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHhCchHH-------------------HH------------------------HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 333333322 11 45578888899999999999988877
Q ss_pred CCCChHHHHHHHHH
Q psy7457 297 EKYNQPGVWKQLAE 310 (497)
Q Consensus 297 ~~y~~~~vwl~lAe 310 (497)
-+-+.+. |.++=.
T Consensus 455 ~~~~~~~-~aR~da 467 (484)
T COG4783 455 VKLGFPD-WARADA 467 (484)
T ss_pred ccCCcHH-HHHHHH
Confidence 7666666 666543
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.30 E-value=0.0018 Score=73.79 Aligned_cols=112 Identities=10% Similarity=-0.101 Sum_probs=92.1
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAAS 126 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~ 126 (497)
..+.++..+.--+|++..++..++..+++.+++. +|+..+++++.. -|.+. +..-.+|....+.|+.++|+.
T Consensus 104 ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~e--eA~~~~~~~l~~-~p~~~-----~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 104 EGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIE--AGRAEIELYFSG-GSSSA-----REILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHH--HHHHHHHHHhhc-CCCCH-----HHHHHHHHHHHHhcchHHHHH
Confidence 3444555555569999999999999999999999 999999999999 99886 788899999999999999999
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 127 SLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 127 ~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
+|++++..+|+. -+-+-=++-+++..|+.++|...+++..
T Consensus 176 ~y~~~~~~~p~~--~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 176 CFERLSRQHPEF--ENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999966632 2333445667888888888888877654
No 80
>KOG1126|consensus
Probab=97.29 E-value=0.0018 Score=72.04 Aligned_cols=177 Identities=11% Similarity=0.073 Sum_probs=136.4
Q ss_pred CCChHHHHHHHHHHHhhhcccccCCccceehhhcccCcch---------------------hhhHHHhhcCCCCccHHHH
Q psy7457 8 YENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKK---------------------IEHILIQRGLSKDTILDNR 66 (497)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~---------------------~~~~~~~~~~~~p~n~~~~ 66 (497)
=..|+-|--+.|..==|.. -++||=|+-|++-.++ ..-|-+.|.+-||.+++++
T Consensus 418 ~~sPesWca~GNcfSLQkd-----h~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKD-----HDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred CCCcHHHHHhcchhhhhhH-----HHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 3569999998887654443 4578888888887665 2334588999999999999
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC--ChhHH
Q psy7457 67 ARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI--RPEHC 144 (497)
Q Consensus 67 ~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f--~~~~v 144 (497)
+.-..+|-+.|++- .|.--|++.+.. .|.+. .++-.+..+|+..|+.++|+++|++|+.-.|-.. ...
T Consensus 493 YGlG~vy~Kqek~e--~Ae~~fqkA~~I-NP~ns-----vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-- 562 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLE--FAEFHFQKAVEI-NPSNS-----VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-- 562 (638)
T ss_pred Hhhhhheeccchhh--HHHHHHHhhhcC-Cccch-----hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH--
Confidence 99999999999999 999999999999 99997 6889999999999999999999999998766321 111
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCC
Q psy7457 145 NLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSET 224 (497)
Q Consensus 145 NiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~ 224 (497)
-+-++..+++|++|+..+...-..+ |++. -+..=+|...-++|..+
T Consensus 563 --~~~il~~~~~~~eal~~LEeLk~~v--------------------------P~es------~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 563 --RASILFSLGRYVEALQELEELKELV--------------------------PQES------SVFALLGKIYKRLGNTD 608 (638)
T ss_pred --HHHHHHhhcchHHHHHHHHHHHHhC--------------------------cchH------HHHHHHHHHHHHHccch
Confidence 2345566789999999998765322 4432 23444566666778877
Q ss_pred chhHHhhcc
Q psy7457 225 QFPTLLASL 233 (497)
Q Consensus 225 ~~~~l~~~l 233 (497)
.+..+|..-
T Consensus 609 ~Al~~f~~A 617 (638)
T KOG1126|consen 609 LALLHFSWA 617 (638)
T ss_pred HHHHhhHHH
Confidence 776666443
No 81
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.0085 Score=53.89 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC-Chh
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI-RPE 142 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f-~~~ 142 (497)
...|++|..+..+|+.. +|+..|++.+.. -+.++ .-....-.+|..|...|++++|+.+++..+..+|+.- .-.
T Consensus 2 ~~~~~~A~a~d~~G~~~--~Ai~~Y~~Al~~-gL~~~--~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~ 76 (120)
T PF12688_consen 2 RALYELAWAHDSLGREE--EAIPLYRRALAA-GLSGA--DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA 76 (120)
T ss_pred chHHHHHHHHHhcCCHH--HHHHHHHHHHHc-CCCch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH
Confidence 36799999999999999 999999999997 44432 2345777899999999999999999999999998732 222
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Q psy7457 143 HCNLYLEVLLELKRYETCVEVLRR 166 (497)
Q Consensus 143 ~vNiLaEL~i~~k~y~~al~~I~~ 166 (497)
---.++..+...|++++|+.++..
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 234466777888999999999765
No 82
>KOG2076|consensus
Probab=97.08 E-value=0.022 Score=65.49 Aligned_cols=112 Identities=14% Similarity=0.002 Sum_probs=101.0
Q ss_pred hhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHH
Q psy7457 48 IEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASS 127 (497)
Q Consensus 48 ~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~ 127 (497)
.+.+|.-.++-||.+...++.-+.+|++.|+.. +|+.....+..+ .|.|. +.=+.+|..-.++|++++|+-.
T Consensus 158 A~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~e--K~l~~~llAAHL-~p~d~-----e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 158 AEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIE--KALNFWLLAAHL-NPKDY-----ELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHHcccHH--HHHHHHHHHHhc-CCCCh-----HHHHHHHHHHHhcccHHHHHHH
Confidence 455777788889999999999999999999999 999999999999 99886 3446899999999999999999
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 128 LAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 128 le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
|.+|+...|+. |.-+-=-++||-++|.+.+|+....+..+
T Consensus 230 y~rAI~~~p~n--~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 230 YSRAIQANPSN--WELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHhcCCcc--hHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 99999999987 88888889999999999999999887664
No 83
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.05 E-value=0.006 Score=57.47 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=73.2
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAAS 126 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~ 126 (497)
..+........-||.|.+.++.-+..++.+|++. +|+++|.+...+ -|.++ ...-++|..|...|+++.|.+
T Consensus 53 ~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~--~AI~aY~~A~~L-~~ddp-----~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 53 GAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWG--EAIYAYGRAAQI-KIDAP-----QAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhc-CCCCc-----hHHHHHHHHHHHcCCHHHHHH
Confidence 4455556667778999999999999999999999 999999999998 88776 566788999999999999999
Q ss_pred HHHHHHHHccCCCChhHH
Q psy7457 127 SLAIAFQYSAHLIRPEHC 144 (497)
Q Consensus 127 ~le~a~~~~~~~f~~~~v 144 (497)
.+..++..+.+.-.|+++
T Consensus 125 aF~~Ai~~~~~~~~~~~l 142 (157)
T PRK15363 125 ALKAVVRICGEVSEHQIL 142 (157)
T ss_pred HHHHHHHHhccChhHHHH
Confidence 999999988655455544
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.00044 Score=54.13 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhC-CcchhHHHHH
Q psy7457 9 ENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIG-LKNRGFVLAG 87 (497)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG-~~~~~~Al~~ 87 (497)
+||+.|..+++....+ .+.++|+=+|++++.. ||++...++.|+.+|.++| ++. +|++.
T Consensus 1 e~a~~~~~~g~~~~~~-----~~~~~A~~~~~~ai~~-------------~p~~~~~~~~~g~~~~~~~~~~~--~A~~~ 60 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQ-----GDYEEAIEYFEKAIEL-------------DPNNAEAYYNLGLAYMKLGKDYE--EAIED 60 (69)
T ss_dssp TSHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHH-------------STTHHHHHHHHHHHHHHTTTHHH--HHHHH
T ss_pred CHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHc-------------CCCCHHHHHHHHHHHHHhCccHH--HHHHH
Confidence 5899999988877654 4567788888888775 8999999999999999999 799 99999
Q ss_pred HHHHHhccCC
Q psy7457 88 YQRYLKNITP 97 (497)
Q Consensus 88 y~~il~~~~P 97 (497)
|++.++. .|
T Consensus 61 ~~~al~l-~P 69 (69)
T PF13414_consen 61 FEKALKL-DP 69 (69)
T ss_dssp HHHHHHH-ST
T ss_pred HHHHHHc-Cc
Confidence 9999998 76
No 85
>KOG0624|consensus
Probab=97.01 E-value=0.012 Score=61.75 Aligned_cols=181 Identities=12% Similarity=0.071 Sum_probs=133.3
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
.-|=+..++--||..|...|+.+ +|+.-.+.+-++ ...++ +..=+++++|++.|+.+.++...-.+++-.|+
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e~k--~AI~Dlk~askL-s~DnT-----e~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGEPK--KAIHDLKQASKL-SQDNT-----EGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCcHH--HHHHHHHHHHhc-cccch-----HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 34667888999999999999999 999999999998 55554 67779999999999999999999999999988
Q ss_pred C---CCh----hHHHHH---HHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCc
Q psy7457 138 L---IRP----EHCNLY---LEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPP 207 (497)
Q Consensus 138 ~---f~~----~~vNiL---aEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPi 207 (497)
+ |.. --|+=. ++-.+..++|.+|+..=...-+ .-|... ||
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--------------------------~ep~~~----~i 305 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--------------------------NEPEET----MI 305 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--------------------------cCCccc----ce
Confidence 6 211 111111 2333444555555443322221 115666 88
Q ss_pred chhHHHHHHHhhcCCCCchhHHhh--cc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHH
Q psy7457 208 EILSKFVITLVHLRSETQFPTLLA--SL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEA 284 (497)
Q Consensus 208 DLr~KLgI~ll~Lg~~~~~~~l~~--~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~ 284 (497)
.++++=.+|+..-++.+..+.+-+ .+ ..++ .|++.+ -|=|+||+.-++|.
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~---~dv~~l------------------------~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP---DDVQVL------------------------CDRAEAYLGDEMYD 358 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHHhcCc---hHHHHH------------------------HHHHHHHhhhHHHH
Confidence 999999999999999988776621 11 2222 344577 99999999999999
Q ss_pred HHHHHHHHHhcCCCCChHH
Q psy7457 285 YAVQVLVLLVSSEKYNQPG 303 (497)
Q Consensus 285 ~Al~~l~~L~~~~~y~~~~ 303 (497)
+|+.=|+..+..++-|..+
T Consensus 359 ~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 359 DAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHhcCcccHHH
Confidence 9999999999888776544
No 86
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.00 E-value=0.00082 Score=52.34 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=51.3
Q ss_pred HHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 74 DEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 74 ~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
-+.|++. +|++.|+++++. .|.+. ++.-.+|.+|++.|++++|...++++....|+.
T Consensus 2 l~~~~~~--~A~~~~~~~l~~-~p~~~-----~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYD--EAIELLEKALQR-NPDNP-----EARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHH--HHHHHHHHHHHH-TTTSH-----HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHH--HHHHHHHHHHHH-CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3578899 999999999999 99985 788899999999999999999999999999973
No 87
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.96 E-value=0.0071 Score=64.68 Aligned_cols=130 Identities=21% Similarity=0.209 Sum_probs=104.3
Q ss_pred CCccHHHHHHH--HHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 59 KDTILDNRARR--LRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 59 ~p~n~~~~~~R--A~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
.|+.++.+.-- ..++...|.+. .|++-|+++.+. -|. +.-.||++|+..++..+|++++.+++..+|
T Consensus 163 ~~t~~~NyLv~~Ll~~l~~t~~~~--~ai~lle~L~~~-~pe--------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p 231 (395)
T PF09295_consen 163 VPTIVNNYLVDTLLKYLSLTQRYD--EAIELLEKLRER-DPE--------VAVLLARVYLLMNEEVEAIRLLNEALKENP 231 (395)
T ss_pred CCCCcchHHHHHHHHHHhhcccHH--HHHHHHHHHHhc-CCc--------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 35566655544 35567778888 999999999999 664 445699999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHH
Q psy7457 137 HLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVIT 216 (497)
Q Consensus 137 ~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ 216 (497)
.. .+-+++.++.++..++|+.|+++.++..... |.+ .+--..|+.|
T Consensus 232 ~d--~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------------------------P~~------f~~W~~La~~ 277 (395)
T PF09295_consen 232 QD--SELLNLQAEFLLSKKKYELALEIAKKAVELS--------------------------PSE------FETWYQLAEC 277 (395)
T ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------------------------chh------HHHHHHHHHH
Confidence 65 7889999999999999999999999977521 443 3556789999
Q ss_pred HhhcCCCCchhHHhhcc
Q psy7457 217 LVHLRSETQFPTLLASL 233 (497)
Q Consensus 217 ll~Lg~~~~~~~l~~~l 233 (497)
.+.+|+.+.+-..+...
T Consensus 278 Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 278 YIQLGDFENALLALNSC 294 (395)
T ss_pred HHhcCCHHHHHHHHhcC
Confidence 99999988866555544
No 88
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.94 E-value=0.00025 Score=58.23 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=60.9
Q ss_pred cCCccceehhhcccCcchhhhHHHhhcCCCCc--cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHH
Q psy7457 30 INPDESRYILSRVRTPKKIEHILIQRGLSKDT--ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDL 107 (497)
Q Consensus 30 ~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~--n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~ 107 (497)
.+.++|+-.|-+++.. +|+ +....+..|..|-+.|+++ +|++.+++ ++. -|.+ .+.
T Consensus 3 ~~y~~Ai~~~~k~~~~-------------~~~~~~~~~~~~la~~~~~~~~y~--~A~~~~~~-~~~-~~~~-----~~~ 60 (84)
T PF12895_consen 3 GNYENAIKYYEKLLEL-------------DPTNPNSAYLYNLAQCYFQQGKYE--EAIELLQK-LKL-DPSN-----PDI 60 (84)
T ss_dssp T-HHHHHHHHHHHHHH-------------HCGTHHHHHHHHHHHHHHHTTHHH--HHHHHHHC-HTH-HHCH-----HHH
T ss_pred ccHHHHHHHHHHHHHH-------------CCCChhHHHHHHHHHHHHHCCCHH--HHHHHHHH-hCC-CCCC-----HHH
Confidence 3455566666666553 442 5778888999999999999 99999999 666 5544 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy7457 108 STRAAHVYHTARNFPQAASSLAIA 131 (497)
Q Consensus 108 ~k~LA~~Y~e~~~~~~Ai~~le~a 131 (497)
.-.+|+.|.++|+.++|+++|+++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhcC
Confidence 667899999999999999999875
No 89
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.93 E-value=0.0076 Score=64.48 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=86.3
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy7457 51 ILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAI 130 (497)
Q Consensus 51 ~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~ 130 (497)
++.+-...+|+ +.... |.++...++.- +|++..++.++. .|.+. +++..-|+.+...++.+.|+.+..+
T Consensus 191 lle~L~~~~pe-v~~~L--A~v~l~~~~E~--~AI~ll~~aL~~-~p~d~-----~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 191 LLEKLRERDPE-VAVLL--ARVYLLMNEEV--EAIRLLNEALKE-NPQDS-----ELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred HHHHHHhcCCc-HHHHH--HHHHHhcCcHH--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444455676 44443 55666677777 999999999999 89884 7999999999999999999999999
Q ss_pred HHHHccCCC-ChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 131 AFQYSAHLI-RPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 131 a~~~~~~~f-~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
+..-.|+.| .|.. |++.|+.+|+|+.||-+|...-
T Consensus 260 av~lsP~~f~~W~~---La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 260 AVELSPSEFETWYQ---LAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhCchhHHHHHH---HHHHHHhcCCHHHHHHHHhcCc
Confidence 999999987 6664 9999999999999999997644
No 90
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.92 E-value=0.0023 Score=51.31 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcc--CCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7457 62 ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNI--TPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQY 134 (497)
Q Consensus 62 n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~--~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~ 134 (497)
-...+...+.+|.++|++. +|++.|++.++.. +|++. .........+|.+|...|+.++|++.++++++-
T Consensus 4 ~a~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYD--EALDYYEKALDIEEQLGDDH-PDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567889999999999999 9999999999662 45432 345788999999999999999999999999874
No 91
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.88 E-value=0.014 Score=59.12 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=85.3
Q ss_pred cHHHHHHHHHH-HHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC-
Q psy7457 62 ILDNRARRLRL-CDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI- 139 (497)
Q Consensus 62 n~~~~~~RA~L-y~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f- 139 (497)
+-...++.|.- ..+.|++. +|+..|+++++. +|.+.. --++.-.+|..|+..|+..+|+..|+.+++.+|+.-
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~--~Ai~af~~fl~~-yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQD--DAIVAFQNFVKK-YPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHH-CcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 45677788774 36679999 999999999999 998851 124677999999999999999999999999999763
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 140 RPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 140 ~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
..+-+-.++..+..+|++.+|++++++...
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344466678888899999999999987664
No 92
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.88 E-value=0.018 Score=52.13 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC-CChhHHH
Q psy7457 67 ARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL-IRPEHCN 145 (497)
Q Consensus 67 ~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~-f~~~~vN 145 (497)
+.-+.-....|+.. ++.+.++++.+. .|.+.... ...=.+|+.+++.|++++|+..|+.+++..|+. ...--.-
T Consensus 15 y~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~s~ya~--~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 15 YEQALQALQAGDPA--KAEAAAEQLAKD-YPSSPYAA--LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHCCCHH--HHHHHHHHHHHH-CCCChHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 33333344577777 888889999999 88875321 233358999999999999999999999988543 2222233
Q ss_pred HHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCc
Q psy7457 146 LYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQ 225 (497)
Q Consensus 146 iLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~ 225 (497)
-|+.+++..|+|.+|+..+.... +..+ ......-+|-+++..|+.+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~-----------------------------~~~~----~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIP-----------------------------DEAF----KALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc-----------------------------Ccch----HHHHHHHHHHHHHHCCCHHH
Confidence 47899999999999999985511 0111 22355668888888888887
Q ss_pred hhHHh
Q psy7457 226 FPTLL 230 (497)
Q Consensus 226 ~~~l~ 230 (497)
+...+
T Consensus 137 A~~~y 141 (145)
T PF09976_consen 137 ARAAY 141 (145)
T ss_pred HHHHH
Confidence 66554
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.87 E-value=0.0094 Score=62.51 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHH
Q psy7457 66 RARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCN 145 (497)
Q Consensus 66 ~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vN 145 (497)
...+|.-+..-|++. .|++.|.+.++. .|.+. .+.-.+|.+|...|+++.|+..+++++...|.. .....
T Consensus 5 l~~~a~~a~~~~~~~--~Ai~~~~~Al~~-~P~~~-----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~ 74 (356)
T PLN03088 5 LEDKAKEAFVDDDFA--LAVDLYTQAIDL-DPNNA-----ELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYL 74 (356)
T ss_pred HHHHHHHHHHcCCHH--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHH
Confidence 567788888999999 999999999999 99875 678899999999999999999999999999965 34567
Q ss_pred HHHHHHHhhccHHHHHHHHHHhch
Q psy7457 146 LYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 146 iLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
.++.+|..+|+|.+|+..+++...
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 788999999999999999988664
No 94
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.84 E-value=0.014 Score=52.88 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLST-RAAHVYHTARNFPQAASSLAIAFQYSAHLIRP 141 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k-~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~ 141 (497)
....+..|..+.+.|++. +|.+.|++++.. .|.+. +..+++ .||.++...|++++|+..++.. .++.|..
T Consensus 48 ~~A~l~lA~~~~~~g~~~--~A~~~l~~~~~~-~~d~~---l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---~~~~~~~ 118 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYD--EAKAALEKALAN-APDPE---LKPLARLRLARILLQQGQYDEALATLQQI---PDEAFKA 118 (145)
T ss_pred HHHHHHHHHHHHHCCCHH--HHHHHHHHHHhh-CCCHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHhc---cCcchHH
Confidence 788899999999999999 999999999999 65443 223333 5899999999999999999762 2344666
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHH
Q psy7457 142 EHCNLYLEVLLELKRYETCVEVLRR 166 (497)
Q Consensus 142 ~~vNiLaEL~i~~k~y~~al~~I~~ 166 (497)
.-..+..++|...|++.+|+..-++
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7788999999999999999987654
No 95
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.83 E-value=0.023 Score=57.37 Aligned_cols=182 Identities=14% Similarity=0.040 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCC-CCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITP-DSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP 141 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P-~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~ 141 (497)
.+.+.+=+..|+..|++. +|.++|.+.... .- .++...--...-+.|.+|.+. ++.+|++.|+++.+-+....++
T Consensus 35 a~~y~~Aa~~fk~~~~~~--~A~~ay~kAa~~-~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWE--KAAEAYEKAADC-YEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHTT-CH--HHHHHHHHHHHH-HHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHhccc--hhHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 345666678899999999 999999999777 32 233333445666788888777 9999999999999988666555
Q ss_pred h----HHHHHHHHHHhh-ccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHH
Q psy7457 142 E----HCNLYLEVLLEL-KRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVIT 216 (497)
Q Consensus 142 ~----~vNiLaEL~i~~-k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ 216 (497)
. -+.-++++|-.. +++++|++..++.+.+. ...+. |.. -.+...|++.+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y-~~e~~--------------------~~~-----a~~~~~~~A~l 164 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY-EQEGS--------------------PHS-----AAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH-HHTT---------------------HHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCCC--------------------hhh-----HHHHHHHHHHH
Confidence 3 367788889888 99999999999988642 11110 111 35678899999
Q ss_pred HhhcCCCCchhHHhhcc-ccCcc------cccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHH
Q psy7457 217 LVHLRSETQFPTLLASL-KFDVE------MYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQV 289 (497)
Q Consensus 217 ll~Lg~~~~~~~l~~~l-~e~~e------e~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~ 289 (497)
.+.+|+.+++-.+++.+ ....+ ...+ .| +-++-|+.-.|.+..|.+.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~--~~------------------------l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE--YF------------------------LKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH--HH------------------------HHHHHHHHHTT-HHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHH--HH------------------------HHHHHHHHHcCCHHHHHHH
Confidence 99999888877676554 21111 1223 44 8889999999999999999
Q ss_pred HHHHhcCC-CCC
Q psy7457 290 LVLLVSSE-KYN 300 (497)
Q Consensus 290 l~~L~~~~-~y~ 300 (497)
|....... .|.
T Consensus 219 ~~~~~~~~~~F~ 230 (282)
T PF14938_consen 219 LERYCSQDPSFA 230 (282)
T ss_dssp HHHHGTTSTTST
T ss_pred HHHHHhhCCCCC
Confidence 99988664 675
No 96
>KOG3060|consensus
Probab=96.83 E-value=0.012 Score=59.57 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=79.6
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
+||+|.-+|-++..+.+-.|... .|+++.-..+.. +|.|. ++=++||++|+..+++++|+=.||..+-..|
T Consensus 115 ddpt~~v~~KRKlAilka~GK~l--~aIk~ln~YL~~-F~~D~-----EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P- 185 (289)
T KOG3060|consen 115 DDPTDTVIRKRKLAILKAQGKNL--EAIKELNEYLDK-FMNDQ-----EAWHELAEIYLSEGDFEKAAFCLEELLLIQP- 185 (289)
T ss_pred cCcchhHHHHHHHHHHHHcCCcH--HHHHHHHHHHHH-hcCcH-----HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC-
Confidence 58999999999999999999999 999999999999 99886 6778999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHhhccHHH
Q psy7457 138 LIRPEHCNLYLEVLLELKRYET 159 (497)
Q Consensus 138 ~f~~~~vNiLaEL~i~~k~y~~ 159 (497)
|..-=+-=|+|++...|.-+.
T Consensus 186 -~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 186 -FNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred -CcHHHHHHHHHHHHHHhhHHH
Confidence 666667778888877765333
No 97
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.77 E-value=0.0049 Score=48.59 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=55.9
Q ss_pred HHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 70 LRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 70 A~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
..+|.+.|++. +|++.++++++. .|.+. .+....|.+|..+|++..|++.++.+++..|+.
T Consensus 2 ~~~~~~~~~~~--~A~~~~~~~l~~-~p~~~-----~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYE--EALEVLERALEL-DPDDP-----ELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHH--HHHHHHHHHHHh-Ccccc-----hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 35788999999 999999999999 99986 678899999999999999999999999999954
No 98
>KOG0553|consensus
Probab=96.75 E-value=0.0019 Score=66.19 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=88.3
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
.++-++|+=+|.++|.. +|+|-=++-.||..|.++|++- .|++.-++.+++ -|+-. +..
T Consensus 94 ~~~Y~eAv~kY~~AI~l-------------~P~nAVyycNRAAAy~~Lg~~~--~AVkDce~Al~i-Dp~ys-----kay 152 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIEL-------------DPTNAVYYCNRAAAYSKLGEYE--DAVKDCESALSI-DPHYS-----KAY 152 (304)
T ss_pred hhhHHHHHHHHHHHHhc-------------CCCcchHHHHHHHHHHHhcchH--HHHHHHHHHHhc-ChHHH-----HHH
Confidence 44455666677766665 9999999999999999999999 999999999999 78765 666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
-.|-..|..+|+++.|++.|.++++-.|+. ..|+..|++.+.-.+
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~N----------------e~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDPDN----------------ESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCCCc----------------HHHHHHHHHHHHHhc
Confidence 789999999999999999999999998853 267888888776554
No 99
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.75 E-value=0.019 Score=53.01 Aligned_cols=102 Identities=12% Similarity=-0.047 Sum_probs=82.7
Q ss_pred ccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCC
Q psy7457 61 TILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIR 140 (497)
Q Consensus 61 ~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~ 140 (497)
+-...+...+.++...|++. .|+..|++.+.. .|... ....+...+|.+|...|+.++|+..|++++...|...
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~--~A~~~~~~al~l-~~~~~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~- 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYA--EALQNYYEAMRL-EIDPY--DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP- 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhc-cccch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-
Confidence 34778899999999999999 999999999998 77532 1224778999999999999999999999999888664
Q ss_pred hhHHHHHHHHHH-------hhccHHHHHHHHHHhch
Q psy7457 141 PEHCNLYLEVLL-------ELKRYETCVEVLRRFAN 169 (497)
Q Consensus 141 ~~~vNiLaEL~i-------~~k~y~~al~~I~~~~~ 169 (497)
...+.++-++. ..|+++.|+..+.+...
T Consensus 107 -~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 107 -QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred -HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 34566666666 88899988887766544
No 100
>KOG1129|consensus
Probab=96.74 E-value=0.013 Score=61.32 Aligned_cols=191 Identities=9% Similarity=0.037 Sum_probs=127.2
Q ss_pred HHHHH--HHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh
Q psy7457 64 DNRAR--RLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP 141 (497)
Q Consensus 64 ~~~~~--RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~ 141 (497)
+.+|+ -+..|-.+|-++ +|-+.+|.-|+. .|+-+ .---|+++|...++++.|+.++..-++..|..++
T Consensus 222 dwwWk~Q~gkCylrLgm~r--~AekqlqssL~q-~~~~d------TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT- 291 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPR--RAEKQLQSSLTQ-FPHPD------TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT- 291 (478)
T ss_pred hHHHHHHHHHHHHHhcChh--hhHHHHHHHhhc-CCchh------HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh-
Confidence 34444 467789999999 999999999999 99874 4457999999999999999999999999994332
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCC----CCCCCCcccc-------ccccccccCCCCCCCCCcchh
Q psy7457 142 EHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFP----QDSTSGEESN-------IQITNYTVPSDPNLVPPPEIL 210 (497)
Q Consensus 142 ~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~----~D~e~d~~~~-------~~~~~~~~p~~l~l~lPiDLr 210 (497)
-+-=.+..+-..++++++++.-+...... ...... --.-+=+..| ++|-.. +-. ..+|-
T Consensus 292 -~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm---G~~----speLf 361 (478)
T KOG1129|consen 292 -YLLGQARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQM---GAQ----SPELF 361 (478)
T ss_pred -hhhhhHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHh---cCC----ChHHH
Confidence 22223456777899999999888766421 100000 0000001111 112111 112 34566
Q ss_pred HHHHHHHhhcCCCCchhHHhhc-c--ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHH
Q psy7457 211 SKFVITLVHLRSETQFPTLLAS-L--KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAV 287 (497)
Q Consensus 211 ~KLgI~ll~Lg~~~~~~~l~~~-l--~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al 287 (497)
+-+|.|-++-++.+.+-.-|+. + ..+++.-+| .+ +.+|-.....|.+..|.
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD--vW------------------------YNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD--VW------------------------YNLGFVAVTIGDFNLAK 415 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh--hh------------------------hccceeEEeccchHHHH
Confidence 7778888888877763333221 1 345667788 88 88888888888888888
Q ss_pred HHHHHHhcCCCCC
Q psy7457 288 QVLVLLVSSEKYN 300 (497)
Q Consensus 288 ~~l~~L~~~~~y~ 300 (497)
+.|..-+.++.-+
T Consensus 416 rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 416 RCFRLALTSDAQH 428 (478)
T ss_pred HHHHHHhccCcch
Confidence 8887777666543
No 101
>KOG0624|consensus
Probab=96.73 E-value=0.047 Score=57.52 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=66.2
Q ss_pred hcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7457 55 RGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQY 134 (497)
Q Consensus 55 ~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~ 134 (497)
|.--||+|+..+++||.+|--+|..+ .|+.-+.++|.+ -|.= +-.--.=+.+..++|+++.|+.=+...+++
T Consensus 64 Ave~dp~~Y~aifrRaT~yLAmGksk--~al~Dl~rVlel-KpDF-----~~ARiQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 64 AVEGDPNNYQAIFRRATVYLAMGKSK--AALQDLSRVLEL-KPDF-----MAARIQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHcCCchhHHHHHHHHHHHhhhcCCc--cchhhHHHHHhc-CccH-----HHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence 45579999999999999999999999 999999999999 5542 333335577889999999999999999999
Q ss_pred ccCCC
Q psy7457 135 SAHLI 139 (497)
Q Consensus 135 ~~~~f 139 (497)
.|+.-
T Consensus 136 ~~s~~ 140 (504)
T KOG0624|consen 136 EPSNG 140 (504)
T ss_pred CCCcc
Confidence 99753
No 102
>KOG1125|consensus
Probab=96.70 E-value=0.027 Score=62.15 Aligned_cols=197 Identities=11% Similarity=0.020 Sum_probs=138.5
Q ss_pred hhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy7457 49 EHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSL 128 (497)
Q Consensus 49 ~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~l 128 (497)
-+++..|.+-||++.+.+-.-....-|.+.-. .|+.++++-+++ -|.+. +++..||..|.-.+.-..|...+
T Consensus 305 ~LafEAAVkqdP~haeAW~~LG~~qaENE~E~--~ai~AL~rcl~L-dP~Nl-----eaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 305 ALAFEAAVKQDPQHAEAWQKLGITQAENENEQ--NAISALRRCLEL-DPTNL-----EALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred HHHHHHHHhhChHHHHHHHHhhhHhhhccchH--HHHHHHHHHHhc-CCccH-----HHHHHHHHHHhhhhhHHHHHHHH
Confidence 34557889999999999999999999999999 999999999999 88885 89999999999999999999999
Q ss_pred HHHHHHccCC-----------CC----hhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCcccccccc
Q psy7457 129 AIAFQYSAHL-----------IR----PEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQIT 193 (497)
Q Consensus 129 e~a~~~~~~~-----------f~----~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~ 193 (497)
.+=+..+|.- |. .-+-+.++.+. +.....++.
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~----------~~fLeaa~~----------------------- 423 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQ----------ELFLEAARQ----------------------- 423 (579)
T ss_pred HHHHHhCccchhccccCccccccCCcCCCCHHHHHHHH----------HHHHHHHHh-----------------------
Confidence 9998877431 11 12233333221 222233331
Q ss_pred ccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHH--HHHHHHHHHhh----
Q psy7457 194 NYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQ--EHYEAYAVQFK---- 266 (497)
Q Consensus 194 ~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~--~~~~~~~~~~~---- 266 (497)
.|... ..|+.+=|||..=-.|..+.+-.-|+.. ..+|.++-= + --=|+.|- .+++++++-|.
T Consensus 424 ---~~~~~----DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---W-NRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 424 ---LPTKI----DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---W-NRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred ---CCCCC----ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH---H-HHhhHHhcCCcccHHHHHHHHHHHh
Confidence 13333 6688888988554455555433333333 556655543 2 12233332 23888888887
Q ss_pred -----hhhhHHHHHHHHhcccHHHHHHHHHHHhcCC
Q psy7457 267 -----ELVYLDIAEALIQEHYEAYAVQVLVLLVSSE 297 (497)
Q Consensus 267 -----~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~ 297 (497)
=|+-.-+|.++|..|.|.+|.++|...+.-.
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 2367899999999999999999886655443
No 103
>KOG0547|consensus
Probab=96.63 E-value=0.019 Score=62.49 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=92.3
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
..|..-||+|-+.++.|++++--++++. .|+..|++...+ -|.+-. .. -.++-.-+.++++..+...++++.
T Consensus 384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e--~A~aDF~Kai~L-~pe~~~----~~-iQl~~a~Yr~~k~~~~m~~Fee~k 455 (606)
T KOG0547|consen 384 NKAEDLDPENPDVYYHRGQMRFLLQQYE--EAIADFQKAISL-DPENAY----AY-IQLCCALYRQHKIAESMKTFEEAK 455 (606)
T ss_pred HHHHhcCCCCCchhHhHHHHHHHHHHHH--HHHHHHHHHhhc-ChhhhH----HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999 999999999999 887752 22 245556667779999999999999
Q ss_pred HHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 133 QYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 133 ~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
.++|.. .+--|..+|.+..+++|.+|++.-...-
T Consensus 456 kkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 456 KKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999976 6778999999999999999999886654
No 104
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.0071 Score=62.97 Aligned_cols=104 Identities=10% Similarity=0.022 Sum_probs=89.3
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
.+|...||+++..=.-...++...|++. +|++.+++++++ .|.=. -+++-.|.+.|++.|+.+..++-+.++.
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~--~AV~~~e~v~eQ-n~~yl----~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQ--KAVEALERVLEQ-NPEYL----SEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchH--HHHHHHHHHHHh-ChHHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444468999999999999999999999 999999999999 66544 4699999999999999999999999999
Q ss_pred HHccCCCChhHHHHHHHHHHhhccHHHHHHHHHH
Q psy7457 133 QYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRR 166 (497)
Q Consensus 133 ~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~ 166 (497)
+.++.. +-+++++++-...+-...|-..+.+
T Consensus 277 ~~~~g~---~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 277 ETNTGA---DAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred HccCCc---cHHHHHHHHHHHhhChHHHHHHHHH
Confidence 998854 8899999999888887777766654
No 105
>KOG4162|consensus
Probab=96.60 E-value=0.086 Score=60.01 Aligned_cols=290 Identities=11% Similarity=-0.016 Sum_probs=174.2
Q ss_pred HHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCC
Q psy7457 20 LVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDS 99 (497)
Q Consensus 20 ~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d 99 (497)
.-...+..+.+++.+-.-|-+..+. -+-.|..-||+|.+.++.-|.=|.+.++.. .|++.-+..+.. .|.+
T Consensus 441 i~y~~~A~~a~~~seR~~~h~kslq------ale~av~~d~~dp~~if~lalq~A~~R~l~--sAl~~~~eaL~l-~~~~ 511 (799)
T KOG4162|consen 441 IAYGFQARQANLKSERDALHKKSLQ------ALEEAVQFDPTDPLVIFYLALQYAEQRQLT--SALDYAREALAL-NRGD 511 (799)
T ss_pred HHHHhHhhcCCChHHHHHHHHHHHH------HHHHHHhcCCCCchHHHHHHHHHHHHHhHH--HHHHHHHHHHHh-cCCc
Confidence 3445666677777766666555544 245677779999999999999999999999 999999999999 9999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchhee-------
Q psy7457 100 DPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEI------- 172 (497)
Q Consensus 100 ~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l------- 172 (497)
+ ....+.||-+...++++..|+.+...+|+.+|+.+...+.-+=.|+- .++-++++.+....-..|-
T Consensus 512 ~----~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~--~~~~e~~l~t~~~~L~~we~~~~~q~ 585 (799)
T KOG4162|consen 512 S----AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT--FNDREEALDTCIHKLALWEAEYGVQQ 585 (799)
T ss_pred c----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh--cccHHHHHHHHHHHHHHHHhhhhHhh
Confidence 8 46889999999999999999999999999999877666666655555 6788888887665444332
Q ss_pred ---eeccC--------CCCCCCCCccccccccc-cccC-CCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhccccCccc
Q psy7457 173 ---TYFKL--------FPQDSTSGEESNIQITN-YTVP-SDPNLVPPPEILSKFVITLVHLRSETQFPTLLASLKFDVEM 239 (497)
Q Consensus 173 ---~~~~~--------~~~D~e~d~~~~~~~~~-~~~p-~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee 239 (497)
++... +..+-.+.+...+..-+ ...+ ..+ ++|.- |=..-+.=|..+.- .+.+.++ .-
T Consensus 586 ~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~--~se~~----Lp~s~~~~~~~~~~-~~~~~lw---ll 655 (799)
T KOG4162|consen 586 TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA--GSELK----LPSSTVLPGPDSLW-YLLQKLW---LL 655 (799)
T ss_pred hhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc--ccccc----cCcccccCCCCchH-HHHHHHH---HH
Confidence 00000 00000000000000000 0000 000 00000 00000000000000 0000000 00
Q ss_pred ccccchhh-----hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy7457 240 YGTITVYL-----DIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEK 314 (497)
Q Consensus 240 ~~D~~Ly~-----~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~ 314 (497)
.+| +|. +.|...|+|-+... .+.-++|+.-|..+...|...+|...|..-+..+.-.-+. ...+|+|+.+
T Consensus 656 aa~--~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s-~~Ala~~lle 730 (799)
T KOG4162|consen 656 AAD--LFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS-MTALAELLLE 730 (799)
T ss_pred HHH--HHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH
Confidence 011 110 11222233321111 2225577999999999999999999998887776655555 7899999999
Q ss_pred hhhcc---C----cccccccCCCchHHHHHHH
Q psy7457 315 SECLS---G----VVVSTVDTGSGSWWFQSMS 339 (497)
Q Consensus 315 l~~l~---~----~~~~~~d~~~~~~w~~~~~ 339 (497)
+|.=+ + ++...+|+..-+||..+=+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 88333 1 1345579999999977655
No 106
>KOG2003|consensus
Probab=96.59 E-value=0.0066 Score=65.48 Aligned_cols=118 Identities=10% Similarity=0.045 Sum_probs=85.8
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
..+|.|||=.|++|-+. =|+|-..+-+-+.||.+-|+.. +|..++-.-.++ +|-+- +.+
T Consensus 571 led~aqaie~~~q~~sl-------------ip~dp~ilskl~dlydqegdks--qafq~~ydsyry-fp~ni-----e~i 629 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-------------IPNDPAILSKLADLYDQEGDKS--QAFQCHYDSYRY-FPCNI-----ETI 629 (840)
T ss_pred hhCHHHHHHHHHHhccc-------------CCCCHHHHHHHHHHhhcccchh--hhhhhhhhcccc-cCcch-----HHH
Confidence 34566666666666553 4566677777888888888888 888888888888 88773 778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
..||.+|++..=.++||+.+|++-.-.|....|-- |.+.-+-..|.|++|+++-+...|
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql--miasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL--MIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH--HHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888888888888777777777743 556666677777777777665443
No 107
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.57 E-value=0.034 Score=55.45 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCC---------------
Q psy7457 14 YYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGL--------------- 78 (497)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~--------------- 78 (497)
|..-+.+.|+..-....+.++|+..+.|.+..+.. +|+.-..++.++..+..+|.
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~----------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD 136 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRD 136 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC----------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccC
Confidence 44444455555556667778888888887775332 34555678888877666551
Q ss_pred ---cchhHHHHHHHHHHhccCCCCCh----hhHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHccCC-CChh
Q psy7457 79 ---KNRGFVLAGYQRYLKNITPDSDP----QTILDLS--------TRAAHVYHTARNFPQAASSLAIAFQYSAHL-IRPE 142 (497)
Q Consensus 79 ---~~~~~Al~~y~~il~~~~P~d~~----~~~~~~~--------k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~-f~~~ 142 (497)
.+ +|++.|+++++. +|.+.- ..-+..+ =.+|+.|.+.|+...|+.-++.+++++|+. ...+
T Consensus 137 ~~~~~--~A~~~~~~li~~-yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~e 213 (243)
T PRK10866 137 PQHAR--AAFRDFSKLVRG-YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRD 213 (243)
T ss_pred HHHHH--HHHHHHHHHHHH-CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHH
Confidence 24 799999999999 998861 1111122 146889999999999999999999999975 5667
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHh
Q psy7457 143 HCNLYLEVLLELKRYETCVEVLRRF 167 (497)
Q Consensus 143 ~vNiLaEL~i~~k~y~~al~~I~~~ 167 (497)
.+-++.+-|..+|.-++|-++....
T Consensus 214 al~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 214 ALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7999999999999998888876553
No 108
>KOG1155|consensus
Probab=96.55 E-value=0.015 Score=62.86 Aligned_cols=153 Identities=8% Similarity=0.061 Sum_probs=120.5
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
..|---||=||-|++.+ +|.|+...+.-.+.|.-++-.- =|+--||+.++. -|+|+ .+.
T Consensus 377 mKNt~AAi~sYRrAvdi-------------~p~DyRAWYGLGQaYeim~Mh~--YaLyYfqkA~~~-kPnDs-----Rlw 435 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDI-------------NPRDYRAWYGLGQAYEIMKMHF--YALYYFQKALEL-KPNDS-----RLW 435 (559)
T ss_pred hcccHHHHHHHHHHHhc-------------CchhHHHHhhhhHHHHHhcchH--HHHHHHHHHHhc-CCCch-----HHH
Confidence 34555667777777775 8888999999999999999999 999999999999 99998 688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchhe-eeeccCCCCCCCCCcc
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIE-ITYFKLFPQDSTSGEE 187 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~-l~~~~~~~~D~e~d~~ 187 (497)
..|++.|.+.++.++||..|.+++.-..- .-+-++-|+.||=.++.+++|.....+.-.+. +.+
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg------------- 500 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG------------- 500 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc-------------
Confidence 89999999999999999999999985442 34678889999999999999998887766422 100
Q ss_pred ccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHh
Q psy7457 188 SNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLL 230 (497)
Q Consensus 188 ~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~ 230 (497)
.+.+. -+..|+=|+.-.++.++.+++..-.
T Consensus 501 --------~~~~~-----t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 501 --------EIDDE-----TIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred --------ccchH-----HHHHHHHHHHHHHhhcchHHHHHHH
Confidence 01111 3566666777778888877766543
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.43 E-value=0.015 Score=58.94 Aligned_cols=105 Identities=12% Similarity=0.049 Sum_probs=83.1
Q ss_pred hHHHHHHHH-HHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCcc---HHHHHHHHHHHHHhCCcchhHHHH
Q psy7457 11 PQEYYSLLN-LVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTI---LDNRARRLRLCDEIGLKNRGFVLA 86 (497)
Q Consensus 11 ~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n---~~~~~~RA~Ly~elG~~~~~~Al~ 86 (497)
+..||.-+- +++.+ .+.++|+=.|...++. .|++ -+.++..+.+|...|++. .|+.
T Consensus 142 e~~~Y~~A~~l~~~~-----~~y~~Ai~af~~fl~~-------------yP~s~~a~~A~y~LG~~y~~~g~~~--~A~~ 201 (263)
T PRK10803 142 ANTDYNAAIALVQDK-----SRQDDAIVAFQNFVKK-------------YPDSTYQPNANYWLGQLNYNKGKKD--DAAY 201 (263)
T ss_pred HHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHH-------------CcCCcchHHHHHHHHHHHHHcCCHH--HHHH
Confidence 356666554 44544 3344555556666653 4554 478999999999999999 9999
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 87 GYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 87 ~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
.|+++++. +|.+. +.-+.+-.++.+|.+.|+..+|+..|+.+++.||+.
T Consensus 202 ~f~~vv~~-yP~s~--~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 202 YFASVVKN-YPKSP--KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHH-CCCCc--chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999 99875 345788899999999999999999999999999964
No 110
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.35 E-value=0.0083 Score=46.47 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 110 RAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 110 ~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
.+|..|.+.|++++|++.|+.++..+|+ +..-...++.++..+|+|++|+.++++...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999996 577889999999999999999999988653
No 111
>KOG1915|consensus
Probab=96.32 E-value=0.18 Score=55.14 Aligned_cols=219 Identities=17% Similarity=0.171 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHH-------HHHHHHHHhCCcchhHH
Q psy7457 12 QEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRA-------RRLRLCDEIGLKNRGFV 84 (497)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~-------~RA~Ly~elG~~~~~~A 84 (497)
.-|...++|+=+ +.++++.+=.|.|+|.- .+|-.=...| -+=.||.|+.-..--++
T Consensus 323 DsWfdylrL~e~-----~g~~~~Ire~yErAIan------------vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 323 DSWFDYLRLEES-----VGDKDRIRETYERAIAN------------VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hHHHHHHHHHHh-----cCCHHHHHHHHHHHHcc------------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 567777777643 36788888899999973 4454444444 44578888754333389
Q ss_pred HHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHH
Q psy7457 85 LAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVL 164 (497)
Q Consensus 85 l~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I 164 (497)
-+-|+..+++ +||..+ +|-.+==.-|+.-+.+.+++.|..+|-.|+-.||.. --.--+.||=++++.+.+|-++-
T Consensus 386 r~vyq~~l~l-IPHkkF-tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKF-TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHhh-cCcccc-hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999 999974 455666778999999999999999999999999953 44567899999999999999988
Q ss_pred HHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCccccccc
Q psy7457 165 RRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTI 243 (497)
Q Consensus 165 ~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~ 243 (497)
.++-.+. |++. -.=+|.|-.=-.||+.+-+..+++.- .++.-|.+.
T Consensus 461 Ekfle~~--------------------------Pe~c------~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe- 507 (677)
T KOG1915|consen 461 EKFLEFS--------------------------PENC------YAWSKYAELETSLGDTDRARAIFELAISQPALDMPE- 507 (677)
T ss_pred HHHHhcC--------------------------hHhh------HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH-
Confidence 7765321 3322 23467777777888888888877654 666666666
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy7457 244 TVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAET 311 (497)
Q Consensus 244 ~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeC 311 (497)
|. .+.-+-|+ .+.|+++.|-.+|..|+....+.. ||+..|+-
T Consensus 508 -ll------------------wkaYIdFE-----i~~~E~ekaR~LYerlL~rt~h~k--vWisFA~f 549 (677)
T KOG1915|consen 508 -LL------------------WKAYIDFE-----IEEGEFEKARALYERLLDRTQHVK--VWISFAKF 549 (677)
T ss_pred -HH------------------HHHhhhhh-----hhcchHHHHHHHHHHHHHhcccch--HHHhHHHH
Confidence 54 11112233 357999999999999999888766 89999874
No 112
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.28 E-value=0.017 Score=62.50 Aligned_cols=78 Identities=14% Similarity=-0.008 Sum_probs=67.8
Q ss_pred CCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 57 LSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 57 ~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
-.+|++...+..++..|.++|++. .|+..|++.+.. .|.+... ....-.+|-.|..+|+.++|++.|++|++.++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGrye--EAIa~f~rALeL-~Pd~aeA--~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVK--DALAQFETALEL-NPNPDEA--QAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhh-CCCchHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 469999999999999999999999 999999999999 8987510 01367999999999999999999999999754
Q ss_pred CCC
Q psy7457 137 HLI 139 (497)
Q Consensus 137 ~~f 139 (497)
..|
T Consensus 144 ~~f 146 (453)
T PLN03098 144 LKF 146 (453)
T ss_pred hhH
Confidence 444
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.25 E-value=0.042 Score=51.85 Aligned_cols=101 Identities=15% Similarity=0.004 Sum_probs=88.8
Q ss_pred CccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC
Q psy7457 60 DTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI 139 (497)
Q Consensus 60 p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f 139 (497)
++..+..+..+.++.+.|++. .|...|+.+... -|.+. +..-.|+-+|-..|++++||.+|..++.-.|+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~--~A~~~f~~L~~~-Dp~~~-----~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd- 102 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFA--GAARLFQLLTIY-DAWSF-----DYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA- 102 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CcccH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-
Confidence 677999999999999999999 999999999999 78775 677799999999999999999999999988854
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHHhchh
Q psy7457 140 RPEHCNLYLEVLLELKRYETCVEVLRRFANI 170 (497)
Q Consensus 140 ~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~ 170 (497)
..-.-=+++-++..|+...|.+.++....|
T Consensus 103 -p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 -PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555788899999999999998876654
No 114
>KOG1129|consensus
Probab=96.23 E-value=0.069 Score=56.02 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccc
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEES 188 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~ 188 (497)
..+++.|..+|-+.+|-.-++.+++..|.. +-.-+|.-.|...++...|+.+|...-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~---dTfllLskvY~ridQP~~AL~~~~~gl-------------------- 283 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---DTFLLLSKVYQRIDQPERALLVIGEGL-------------------- 283 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch---hHHHHHHHHHHHhccHHHHHHHHhhhh--------------------
Confidence 489999999999999999999999977643 557789999999999999999997743
Q ss_pred cccccccccCCCCCCCCCcchhHHHHHHHhh--cCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHh
Q psy7457 189 NIQITNYTVPSDPNLVPPPEILSKFVITLVH--LRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQF 265 (497)
Q Consensus 189 ~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~--Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~ 265 (497)
+++ |.|....+|++||| |++.+.+-.+.... ..++- .||-.
T Consensus 284 ----------d~f----P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~---nvEai------------------- 327 (478)
T KOG1129|consen 284 ----------DSF----PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI---NVEAI------------------- 327 (478)
T ss_pred ----------hcC----CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc---cceee-------------------
Confidence 334 88999999999998 55666554443333 22221 12222
Q ss_pred hhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy7457 266 KELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETY 312 (497)
Q Consensus 266 ~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy 312 (497)
--||--|+=-++.+-|++||..++.---+ +|.++..+|=|.
T Consensus 328 -----Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC 368 (478)
T KOG1129|consen 328 -----ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCC 368 (478)
T ss_pred -----eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHH
Confidence 34566666678888899999888876444 577788888883
No 115
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.09 E-value=0.027 Score=52.31 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHH
Q psy7457 62 ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFP 122 (497)
Q Consensus 62 n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~ 122 (497)
....+...+.+|..+|++. +|++.|++.++. .|.+. .....++.+|...++..
T Consensus 71 ~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~-~p~~~-----~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 71 RSYILYNMGIIYASNGEHD--KALEYYHQALEL-NPKQP-----SALNNIAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh-CcccH-----HHHHHHHHHHHHcCChH
Confidence 3678999999999999999 999999999999 88774 46667888888877743
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.08 E-value=0.11 Score=57.51 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCC
Q psy7457 101 PQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQ 180 (497)
Q Consensus 101 ~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~ 180 (497)
+...+=+.--+|..|-..|+.++|++..+.|+++-|.. .+-.-+-+.+|-..|.+++|.+++..... + |
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~--L---D---- 258 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARE--L---D---- 258 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--C---C----
Confidence 44445577789999999999999999999999999965 34455556666677999999999977553 2 0
Q ss_pred CCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHH
Q psy7457 181 DSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYE 259 (497)
Q Consensus 181 D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~ 259 (497)
.-+-+ |-+|.+-.++|-|..+.++..+..| ..+..-..| |+ ..|--
T Consensus 259 ----------------~~DRy-------iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~--L~------~mQc~-- 305 (517)
T PF12569_consen 259 ----------------LADRY-------INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN--LN------DMQCM-- 305 (517)
T ss_pred ----------------hhhHH-------HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC--HH------HHHHH--
Confidence 01222 6688899999999999999999888 666666677 77 22222
Q ss_pred HHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 260 AYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 260 ~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
-| ..+.|+||...|.|..|++.|......
T Consensus 306 ----Wf----~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 306 ----WF----ETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred ----HH----HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22 389999999999999999999877665
No 117
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.07 E-value=0.027 Score=50.68 Aligned_cols=105 Identities=18% Similarity=0.106 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHH
Q psy7457 11 PQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQR 90 (497)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~ 90 (497)
|+++|+++.. -...-.|++|+=.|-|++. .+++++.-.+.++..+..|..+|++. +|+..+++
T Consensus 1 ~~~~~~~A~a-----~d~~G~~~~Ai~~Y~~Al~----------~gL~~~~~~~a~i~lastlr~LG~~d--eA~~~L~~ 63 (120)
T PF12688_consen 1 PRALYELAWA-----HDSLGREEEAIPLYRRALA----------AGLSGADRRRALIQLASTLRNLGRYD--EALALLEE 63 (120)
T ss_pred CchHHHHHHH-----HHhcCCHHHHHHHHHHHHH----------cCCCchHHHHHHHHHHHHHHHcCCHH--HHHHHHHH
Confidence 4555555543 2336678999999999987 36778877899999999999999999 99999999
Q ss_pred HHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Q psy7457 91 YLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS 135 (497)
Q Consensus 91 il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~ 135 (497)
.+.. .|.++... .+---+|-..+..|+..+|++.+-.++...
T Consensus 64 ~~~~-~p~~~~~~--~l~~f~Al~L~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 64 ALEE-FPDDELNA--ALRVFLALALYNLGRPKEALEWLLEALAET 105 (120)
T ss_pred HHHH-CCCccccH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999 99865332 344457788999999999999999888643
No 118
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.96 E-value=0.18 Score=45.17 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC-----------------hhhHHHHHHHHHHHHHhcCCHHHHH
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD-----------------PQTILDLSTRAAHVYHTARNFPQAA 125 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~-----------------~~~~~~~~k~LA~~Y~e~~~~~~Ai 125 (497)
++...+++....+-|+.. .+++.+++++.. +..+. .+.++++++.+|..+.+.|+.+.|+
T Consensus 6 F~~~~~~a~~~~~~~~~~--~~~~~~~~al~l-y~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 6 FEALVREARAAARAGDPE--EAIELLEEALAL-YRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHTT-HH--HHHHHHHHHHTT---SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCHH--HHHHHHHHHHHH-hCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 344556677777888888 999999999988 43222 1446778899999999999999999
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchh
Q psy7457 126 SSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANI 170 (497)
Q Consensus 126 ~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~ 170 (497)
..+.+++...| ++-.-.-.|...|...|++..|+++..+..+.
T Consensus 83 ~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 83 RLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999 55566888999999999999999999998764
No 119
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.96 E-value=0.056 Score=54.08 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=88.9
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIA 131 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a 131 (497)
+..|...||+++..+.-||.+|..+|+.. .|-+.|++.++. -|.+. +|+..-.-....+|+++.|..-++.|
T Consensus 58 lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~--~A~e~YrkAlsl-~p~~G-----dVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 58 LEKALEHDPSYYLAHLVRAHYYQKLGEND--LADESYRKALSL-APNNG-----DVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChh--hHHHHHHHHHhc-CCCcc-----chhhhhhHHHHhCCChHHHHHHHHHH
Confidence 45677789999999999999999999999 999999999999 88875 79999999999999999999999999
Q ss_pred HH--HccCC-CChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 132 FQ--YSAHL-IRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 132 ~~--~~~~~-f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
+. .|++. -+|+-+-+. -++.|++..|=+.+++.-.
T Consensus 130 l~~P~Y~~~s~t~eN~G~C---al~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 130 LADPAYGEPSDTLENLGLC---ALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HhCCCCCCcchhhhhhHHH---HhhcCCchhHHHHHHHHHH
Confidence 98 55544 344444333 2456888888888877553
No 120
>KOG1156|consensus
Probab=95.90 E-value=0.062 Score=60.16 Aligned_cols=157 Identities=14% Similarity=0.018 Sum_probs=113.5
Q ss_pred ccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHH
Q psy7457 33 DESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAA 112 (497)
Q Consensus 33 ~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA 112 (497)
++||=||-+++. .+|+|..++.+-|.|.-++|++. -.++...++++. .|....+|+ -.|
T Consensus 92 ~eaiKcy~nAl~-------------~~~dN~qilrDlslLQ~QmRd~~--~~~~tr~~LLql-~~~~ra~w~-----~~A 150 (700)
T KOG1156|consen 92 DEAIKCYRNALK-------------IEKDNLQILRDLSLLQIQMRDYE--GYLETRNQLLQL-RPSQRASWI-----GFA 150 (700)
T ss_pred HHHHHHHHHHHh-------------cCCCcHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHh-hhhhHHHHH-----HHH
Confidence 455555555555 58999999999999999999999 999999999999 888865555 688
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHc---cCCCChhHHHHH---HHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCc
Q psy7457 113 HVYHTARNFPQAASSLAIAFQYS---AHLIRPEHCNLY---LEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGE 186 (497)
Q Consensus 113 ~~Y~e~~~~~~Ai~~le~a~~~~---~~~f~~~~vNiL---aEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~ 186 (497)
..+|..|+...|+++++.+...+ |+.-+.++-..+ .-.++..+.+++|++-+....+.++
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-------------- 216 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-------------- 216 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH--------------
Confidence 99999999999999999998877 554444443333 3456677889999998877665332
Q ss_pred cccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccc
Q psy7457 187 ESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGT 242 (497)
Q Consensus 187 ~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D 242 (497)
+.+ -..-+-+-...+|+..+++..+...| ..+|+.+..
T Consensus 217 ------------Dkl------a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 217 ------------DKL------AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred ------------HHH------HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 100 00111122346778888888887777 677665544
No 121
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.89 E-value=0.024 Score=43.99 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=44.7
Q ss_pred HhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 116 HTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 116 ~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
++.|++++|++.|+.++..+|+ +.+-.--|+.+|+.+|+|++|..++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999997 355566799999999999999999987653
No 122
>KOG2003|consensus
Probab=95.87 E-value=0.028 Score=60.84 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=116.9
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
..|++||+=||=+.-.+ +- .|.+.+.+-|.+|+-+.+.. +|++-|-+.... +|.|+ .++
T Consensus 537 ~~~ldeald~f~klh~i-----------l~--nn~evl~qianiye~led~a--qaie~~~q~~sl-ip~dp-----~il 595 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAI-----------LL--NNAEVLVQIANIYELLEDPA--QAIELLMQANSL-IPNDP-----AIL 595 (840)
T ss_pred hcCHHHHHHHHHHHHHH-----------HH--hhHHHHHHHHHHHHHhhCHH--HHHHHHHHhccc-CCCCH-----HHH
Confidence 57788888887543221 11 35889999999999999999 999999999999 99987 699
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccc
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEES 188 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~ 188 (497)
-.||.+|-..|+-.+|-+.+=..+.++|.. .+-+.-|+..||.+.-|+++|..+.+.+- +|
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~n--ie~iewl~ayyidtqf~ekai~y~ekaal--iq--------------- 656 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCN--IETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ--------------- 656 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC---------------
Confidence 999999999999999998888888888854 57788899999999999999999999873 21
Q ss_pred cccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc
Q psy7457 189 NIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL 233 (497)
Q Consensus 189 ~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l 233 (497)
|... -+.+ -.+.|+=+-|+.+.+-.+...+
T Consensus 657 ---------p~~~----kwql--miasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 657 ---------PNQS----KWQL--MIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred ---------ccHH----HHHH--HHHHHHHhcccHHHHHHHHHHH
Confidence 3322 2222 2355888889887755554444
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.85 E-value=0.091 Score=53.17 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=70.6
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIA 131 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a 131 (497)
+.+.....|++....-..+...-..|++. .|...+++.... -|+|. +..--++-.|-+.|+.+.|-..|..+
T Consensus 89 ~~~~~~~~~~d~~ll~~~gk~~~~~g~~~--~A~~~~rkA~~l-~p~d~-----~~~~~lgaaldq~Gr~~~Ar~ay~qA 160 (257)
T COG5010 89 LQKSAIAYPKDRELLAAQGKNQIRNGNFG--EAVSVLRKAARL-APTDW-----EAWNLLGAALDQLGRFDEARRAYRQA 160 (257)
T ss_pred HhhhhccCcccHHHHHHHHHHHHHhcchH--HHHHHHHHHhcc-CCCCh-----hhhhHHHHHHHHccChhHHHHHHHHH
Confidence 35556666676666655666666777777 777777777777 66664 45566777777777777777777777
Q ss_pred HHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHH
Q psy7457 132 FQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRR 166 (497)
Q Consensus 132 ~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~ 166 (497)
++-.|. +..-+|=++-.|+..|++++|-..+.+
T Consensus 161 l~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 161 LELAPN--EPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred HHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 776553 245566666677777777777666654
No 124
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.78 E-value=0.0072 Score=47.63 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=45.9
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD 100 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~ 100 (497)
..++++|+=|+.|++. -+|++...++.|+.+|.+.|++. .|++.|+++++. .|.+.
T Consensus 8 ~~~~~~A~~~~~~~l~-------------~~p~~~~~~~~~a~~~~~~g~~~--~A~~~l~~~l~~-~p~~~ 63 (73)
T PF13371_consen 8 QEDYEEALEVLERALE-------------LDPDDPELWLQRARCLFQLGRYE--EALEDLERALEL-SPDDP 63 (73)
T ss_pred CCCHHHHHHHHHHHHH-------------hCcccchhhHHHHHHHHHhccHH--HHHHHHHHHHHH-CCCcH
Confidence 3444555555555555 58999999999999999999999 999999999999 99764
No 125
>KOG1126|consensus
Probab=95.78 E-value=0.073 Score=59.57 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHhcCCC
Q psy7457 269 VYLDIAEALIQEHYEAYAVQVLVLLVSSEK 298 (497)
Q Consensus 269 ~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~ 298 (497)
+|.-+|..|...|.+..|+.-|....+.+.
T Consensus 593 v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 593 VFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 446777777777777777777766666554
No 126
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.77 E-value=0.054 Score=43.34 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCC-----hhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 103 TILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIR-----PEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 103 ~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~-----~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
....+...+|.+|..+|+.++|++.|+++++......+ -.-.+-++.+|...|+|++|++.+++...
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34578899999999999999999999999997422221 22367789999999999999999987653
No 127
>KOG0543|consensus
Probab=95.68 E-value=0.029 Score=59.74 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=73.0
Q ss_pred hhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHh
Q psy7457 38 ILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHT 117 (497)
Q Consensus 38 ~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e 117 (497)
||.+.-.+.+...+|.++-.-+|+|+..+|+|+..|-.+|++. .|+.-|+++++. -|.|- .+-.+|+++-..
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~--~A~~df~ka~k~-~P~Nk-----a~~~el~~l~~k 337 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYD--LARDDFQKALKL-EPSNK-----AARAELIKLKQK 337 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHH--HHHHHHHHHHHh-CCCcH-----HHHHHHHHHHHH
Confidence 5555545555555666666679999999999999999999999 999999999999 99884 566677776666
Q ss_pred cCCHH-HHHHHHHHHHHHccC
Q psy7457 118 ARNFP-QAASSLAIAFQYSAH 137 (497)
Q Consensus 118 ~~~~~-~Ai~~le~a~~~~~~ 137 (497)
..+.+ +..++|.+.|...++
T Consensus 338 ~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 66654 458899999998754
No 128
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.61 E-value=0.055 Score=49.88 Aligned_cols=87 Identities=13% Similarity=-0.091 Sum_probs=60.0
Q ss_pred cCCccceehhhcccCcchhhhHHHhhcCCCCc-cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 30 INPDESRYILSRVRTPKKIEHILIQRGLSKDT-ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 30 ~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~-n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
..+++|+-+|-+++.+ ..+|. ....+...+.+|...|++. .|++.|++.++. .|... ...
T Consensus 49 g~~~~A~~~~~~al~l-----------~~~~~~~~~~~~~lg~~~~~~g~~~--eA~~~~~~Al~~-~~~~~-----~~~ 109 (168)
T CHL00033 49 GEYAEALQNYYEAMRL-----------EIDPYDRSYILYNIGLIHTSNGEHT--KALEYYFQALER-NPFLP-----QAL 109 (168)
T ss_pred CCHHHHHHHHHHHHhc-----------cccchhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh-CcCcH-----HHH
Confidence 3455666666665543 11222 3457889999999999999 999999999999 77664 344
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHHHHHHHc
Q psy7457 109 TRAAHVYH-------TARNFPQAASSLAIAFQYS 135 (497)
Q Consensus 109 k~LA~~Y~-------e~~~~~~Ai~~le~a~~~~ 135 (497)
..++.+|. +.|+...|+..+..++..+
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 143 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW 143 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence 55566666 8889886666666555544
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.56 E-value=0.19 Score=54.70 Aligned_cols=117 Identities=14% Similarity=-0.043 Sum_probs=100.3
Q ss_pred cchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHH
Q psy7457 45 PKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQA 124 (497)
Q Consensus 45 ~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~A 124 (497)
+++.+--+.+-.+.-|+|.-+..-+..++.+.|+.+ +|.+-+++++.. .|+.. -+--.+|..|.+.|+..+|
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~--~A~e~~~kal~l-~P~~~-----~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAK--EAIERLKKALAL-DPNSP-----LLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhc-CCCcc-----HHHHHHHHHHHhcCChHHH
Confidence 344555566667788999999999999999999999 999999999999 99986 2455799999999999999
Q ss_pred HHHHHHHHHHccCCC---------------ChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 125 ASSLAIAFQYSAHLI---------------RPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 125 i~~le~a~~~~~~~f---------------~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
|..+.+.....|+.- .-+.+--++|-|-..|+|++|+..+.+...
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999988752 346678889999999999999999988765
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.43 E-value=0.39 Score=56.45 Aligned_cols=138 Identities=12% Similarity=-0.036 Sum_probs=106.2
Q ss_pred CCCCChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHH
Q psy7457 6 QSYENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVL 85 (497)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al 85 (497)
-+..|++.|..|++.... .++|++++.....+++ ..|+.+.+++--+.||.+.|+.+ .|.
T Consensus 26 ~~p~n~~a~~~Li~~~~~-----~~~~deai~i~~~~l~-------------~~P~~i~~yy~~G~l~~q~~~~~--~~~ 85 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKS-----ENLTDEAKDICEEHLK-------------EHKKSISALYISGILSLSRRPLN--DSN 85 (906)
T ss_pred CCcchHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH-------------hCCcceehHHHHHHHHHhhcchh--hhh
Confidence 355678888888876543 4567777766665555 47777999999999999999888 555
Q ss_pred HHHHHHHhccCCCCCh----hhHH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy7457 86 AGYQRYLKNITPDSDP----QTIL----------DLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVL 151 (497)
Q Consensus 86 ~~y~~il~~~~P~d~~----~~~~----------~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~ 151 (497)
-- +++.. .|.+.. +++. .+++.+|.+|-++|+..+|+.+|++++...|+. ..-+|=||..|
T Consensus 86 lv--~~l~~-~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ 160 (906)
T PRK14720 86 LL--NLIDS-FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSY 160 (906)
T ss_pred hh--hhhhh-cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHH
Confidence 44 55555 444430 1111 588999999999999999999999999998754 57899999999
Q ss_pred HhhccHHHHHHHHHHhch
Q psy7457 152 LELKRYETCVEVLRRFAN 169 (497)
Q Consensus 152 i~~k~y~~al~~I~~~~~ 169 (497)
... ..++|+...++...
T Consensus 161 ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHh-hHHHHHHHHHHHHH
Confidence 999 99999999888664
No 131
>KOG3060|consensus
Probab=95.40 E-value=2.2 Score=43.60 Aligned_cols=183 Identities=16% Similarity=0.082 Sum_probs=129.3
Q ss_pred HHHhCCcchhHHHHHHHHHHhccCCCC-ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy7457 73 CDEIGLKNRGFVLAGYQRYLKNITPDS-DPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVL 151 (497)
Q Consensus 73 y~elG~~~~~~Al~~y~~il~~~~P~d-~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~ 151 (497)
.++.+.++--+-++-...++.. .|.. .|+.+..+...++-.-.+.++...|-..+...-++.|.. .--.-+.+=++
T Consensus 20 wr~~~~rnseevv~l~~~~~~~-~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S--~RV~~lkam~l 96 (289)
T KOG3060|consen 20 WREETVRNSEEVVQLGSEVLNY-SKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS--KRVGKLKAMLL 96 (289)
T ss_pred HHhccccCHHHHHHHHHHHHHH-hhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC--hhHHHHHHHHH
Confidence 3555555544667777777777 7777 566777899999999999999999999999888888743 44456666777
Q ss_pred HhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhH-HHHHHHhhcCCCCc-hhHH
Q psy7457 152 LELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILS-KFVITLVHLRSETQ-FPTL 229 (497)
Q Consensus 152 i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~-KLgI~ll~Lg~~~~-~~~l 229 (497)
=.+++|++|++...+.-. +| |.+. -+|. |+++ +--.|..-+ .+.+
T Consensus 97 Ea~~~~~~A~e~y~~lL~--------------dd------------pt~~------v~~KRKlAi-lka~GK~l~aIk~l 143 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLE--------------DD------------PTDT------VIRKRKLAI-LKAQGKNLEAIKEL 143 (289)
T ss_pred HHhhchhhHHHHHHHHhc--------------cC------------cchh------HHHHHHHHH-HHHcCCcHHHHHHH
Confidence 788999999999876442 11 2221 1233 4544 333443322 3333
Q ss_pred hhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHH
Q psy7457 230 LASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLA 309 (497)
Q Consensus 230 ~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lA 309 (497)
...++- =++|-|.+ .++|+.|...|+|+.|.-+|+.++....|+... +.++|
T Consensus 144 n~YL~~---F~~D~EAW------------------------~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~-f~rla 195 (289)
T KOG3060|consen 144 NEYLDK---FMNDQEAW------------------------HELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY-FQRLA 195 (289)
T ss_pred HHHHHH---hcCcHHHH------------------------HHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH-HHHHH
Confidence 222211 13566688 999999999999999999999999999998665 99999
Q ss_pred HHHHHhhhcc
Q psy7457 310 ETYEKSECLS 319 (497)
Q Consensus 310 eCy~~l~~l~ 319 (497)
+.+.-.+-.+
T Consensus 196 e~~Yt~gg~e 205 (289)
T KOG3060|consen 196 EVLYTQGGAE 205 (289)
T ss_pred HHHHHHhhHH
Confidence 9977755433
No 132
>KOG1173|consensus
Probab=95.34 E-value=0.41 Score=53.20 Aligned_cols=237 Identities=10% Similarity=0.003 Sum_probs=156.0
Q ss_pred ccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC-C
Q psy7457 61 TILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL-I 139 (497)
Q Consensus 61 ~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~-f 139 (497)
+|.+.+..+|.-+.+.++++ ..++-...++.. .|.... -+.-++| .+++.|+-++=-.+=-+.++.+|+. .
T Consensus 242 ~~~dll~~~ad~~y~~c~f~--~c~kit~~lle~-dpfh~~----~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~ 313 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFK--ECLKITEELLEK-DPFHLP----CLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKAL 313 (611)
T ss_pred hcHHHHHHHHHHHHHcChHH--HHHHHhHHHHhh-CCCCcc----hHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCc
Confidence 57899999999999999999 999999999999 888863 3556788 8999999988877777888899985 7
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHHhchh-------eeeeccCCCCCCCCCccccccc-cc-cccCCCCCCCCCcchh
Q psy7457 140 RPEHCNLYLEVLLELKRYETCVEVLRRFANI-------EITYFKLFPQDSTSGEESNIQI-TN-YTVPSDPNLVPPPEIL 210 (497)
Q Consensus 140 ~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~-------~l~~~~~~~~D~e~d~~~~~~~-~~-~~~p~~l~l~lPiDLr 210 (497)
+|-.|-++ |+-.++|.+|-+.+-+.+.. |++......-.+|-|-. ..-+ ++ ..+|+.- +|.
T Consensus 314 sW~aVg~Y---Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA-maaY~tAarl~~G~h---lP~--- 383 (611)
T KOG1173|consen 314 SWFAVGCY---YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA-MAAYFTAARLMPGCH---LPS--- 383 (611)
T ss_pred chhhHHHH---HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH-HHHHHHHHHhccCCc---chH---
Confidence 99988876 55569999999988776642 11111111101111110 0000 00 1123322 131
Q ss_pred HHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHH-HHHHHHHHHHhhhh----------------hhHH
Q psy7457 211 SKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALI-QEHYEAYAVQFKEL----------------VYLD 272 (497)
Q Consensus 211 ~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~-~~~~~~~~~~~~~~----------------~~ld 272 (497)
.-+|.=.-++++...++..|..- .-.|.|--- +. .++=.+- -+.|.++..+|+-. +..-
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv--~~-Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV--LH-ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh--hh-hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 23555555677777766665332 222221111 11 0111111 13377888888733 3889
Q ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhcc
Q psy7457 273 IAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 273 vaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~ 319 (497)
+|-+|-..+.|.+|+.+|..-+.... .++.+.-.+|-||..++++.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChH
Confidence 99999999999999999988776643 45556888999999999775
No 133
>KOG1127|consensus
Probab=95.20 E-value=1.1 Score=52.73 Aligned_cols=307 Identities=10% Similarity=0.022 Sum_probs=163.0
Q ss_pred hhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHH
Q psy7457 48 IEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASS 127 (497)
Q Consensus 48 ~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~ 127 (497)
.-|-++||.+-||.=....---...|++.-+.. +|-.+|++...+ -|.+. +..+-+|+.|.+.++-+.|..+
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~--RA~kCf~KAFeL-Datda-----eaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK--RAKKCFDKAFEL-DATDA-----EAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH--HHHHHHHHHhcC-Cchhh-----hhHHHHHHHhhccccHHHHHHH
Confidence 334557777777776666666666677776666 777777777777 45443 6777777777777777777776
Q ss_pred HHHHHHHccC---CCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCC
Q psy7457 128 LAIAFQYSAH---LIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLV 204 (497)
Q Consensus 128 le~a~~~~~~---~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~ 204 (497)
.-++=++.|- .+.|-. ..=+|+.-+++.+++..++..-|. -|.++
T Consensus 549 ~l~~~qka~a~~~k~nW~~---rG~yyLea~n~h~aV~~fQsALR~--------------------------dPkD~--- 596 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQ---RGPYYLEAHNLHGAVCEFQSALRT--------------------------DPKDY--- 596 (1238)
T ss_pred HHHHhhhchHHHHHhhhhh---ccccccCccchhhHHHHHHHHhcC--------------------------CchhH---
Confidence 4444444332 245555 333455666777777766654431 14433
Q ss_pred CCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHH---HHHHHHHhh--------------
Q psy7457 205 PPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEH---YEAYAVQFK-------------- 266 (497)
Q Consensus 205 lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~---~~~~~~~~~-------------- 266 (497)
+.=.-||-+...-|....+-..|+.. .-+|+.... -|| ++.++-+ |.++..++.
T Consensus 597 ---n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~--~fk---~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~ 668 (1238)
T KOG1127|consen 597 ---NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG--RFK---EAVMECDNGKYKEALDALGLIIYAFSLERTGQN 668 (1238)
T ss_pred ---HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH--HHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666667777777777777666 555654444 442 2223322 777766665
Q ss_pred ---hhhhHHHHHHHHhcccHH-------HHHHHHHHHhcCCCCChHHHHHHHHHHH---HHhh----------hccCccc
Q psy7457 267 ---ELVYLDIAEALIQEHYEA-------YAVQVLVLLVSSEKYNQPGVWKQLAETY---EKSE----------CLSGVVV 323 (497)
Q Consensus 267 ---~~~~ldvaeAl~e~g~y~-------~Al~~l~~L~~~~~y~~~~vwl~lAeCy---~~l~----------~l~~~~~ 323 (497)
|.+ +-.+..+.-.|-+. .+++.+...+....-++.-+|.-+++.. .+++ .|+.--+
T Consensus 669 gLaE~~-ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 669 GLAESV-IRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLE 747 (1238)
T ss_pred hHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 33333333344444 4444444333333334555677777642 2222 1111111
Q ss_pred ccccCCCchHHHHHHHhhh----------hhcccccccHHHHh-hccccccccccccCCcchhHHHHHHHHHhcCCCccc
Q psy7457 324 STVDTGSGSWWFQSMSSAM----------CSTVLIKDSTEHLD-QLSLDATTVLYKTGHIPHAYQLFRVLMLKNLDSKVV 392 (497)
Q Consensus 324 ~~~d~~~~~~w~~~~~~~~----------~~~~~~~~~~~~l~-~~~l~~~~~~~~~~~~~~ay~~~r~~~~~~~~~~~~ 392 (497)
.+.+.-+.| ++.+-..| .++++ +--++.+. |+.++-| .. +--.|-+-+..-|....++-.+
T Consensus 748 ~~~~l~~~d--~l~Lg~~c~~~hlsl~~~~~~Wy-NLGinylr~f~~l~et---~~--~~~~Ai~c~KkaV~L~ann~~~ 819 (1238)
T KOG1127|consen 748 KTGALKKND--LLFLGYECGIAHLSLAIHMYPWY-NLGINYLRYFLLLGET---MK--DACTAIRCCKKAVSLCANNEGL 819 (1238)
T ss_pred hcccCcchh--HHHHHHHHhhHHHHHhhccchHH-HHhHHHHHHHHHcCCc---ch--hHHHHHHHHHHHHHHhhccHHH
Confidence 112222444 22222111 22322 22355666 3333111 11 1134555566666667777779
Q ss_pred hhhhhccccCCCccchhHHH
Q psy7457 393 LNLMNLITLRSSDIRIVRNT 412 (497)
Q Consensus 393 wnlfn~~~~~t~~iTL~rfL 412 (497)
||.+..+++ +.-++..++|
T Consensus 820 WnaLGVlsg-~gnva~aQHC 838 (1238)
T KOG1127|consen 820 WNALGVLSG-IGNVACAQHC 838 (1238)
T ss_pred HHHHHHhhc-cchhhhhhhh
Confidence 999998733 2345666555
No 134
>KOG2376|consensus
Probab=95.05 E-value=6.7 Score=44.24 Aligned_cols=132 Identities=19% Similarity=0.136 Sum_probs=88.4
Q ss_pred cccCCc--cceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcc----------
Q psy7457 28 QVINPD--ESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNI---------- 95 (497)
Q Consensus 28 ~~~~~~--~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~---------- 95 (497)
+.+|-- +--||.=|.=.+...--+ .+ ++ |+.+.....=||.++-++|.+. +|++-|+.+.+.-
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~-~~-~~-~~~~~~ll~L~AQvlYrl~~yd--ealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKT-LK-GL-DRLDDKLLELRAQVLYRLERYD--EALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHH-Hh-cc-cccchHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCCchHHHHHHH
Confidence 344444 666887776444322222 22 33 4455678888999999999999 9999999995541
Q ss_pred ----------------CCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhH---------HHH----
Q psy7457 96 ----------------TPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEH---------CNL---- 146 (497)
Q Consensus 96 ----------------~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~---------vNi---- 146 (497)
.|..+ +.-.+.+=..|-++++.|++++|+++++.+..-|...+..++ +|+
T Consensus 151 nl~a~~a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 151 NLLAVAAALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred HHHHHHHhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 22222 222356667888999999999999999999998877664433 333
Q ss_pred HHHHHHhhccHHHHHHHHH
Q psy7457 147 YLEVLLELKRYETCVEVLR 165 (497)
Q Consensus 147 LaEL~i~~k~y~~al~~I~ 165 (497)
|+=.+-..|+=++|..+..
T Consensus 230 layVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred HHHHHHHhcchHHHHHHHH
Confidence 3344445577777776543
No 135
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.00 E-value=0.26 Score=50.58 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=101.6
Q ss_pred CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHh--c--CCHHHHHHHHHHHHHH
Q psy7457 59 KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHT--A--RNFPQAASSLAIAFQY 134 (497)
Q Consensus 59 ~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e--~--~~~~~Ai~~le~a~~~ 134 (497)
+-.+.+.+.=+..+|-.+|+.. .|-+.++++-+. ..| +++-.||..++. . +.+++|.-+|++.-++
T Consensus 127 ~~~~lE~~al~Vqi~L~~~R~d--lA~k~l~~~~~~--~eD------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~ 196 (290)
T PF04733_consen 127 KGGSLELLALAVQILLKMNRPD--LAEKELKNMQQI--DED------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK 196 (290)
T ss_dssp TTTCHHHHHHHHHHHHHTT-HH--HHHHHHHHHHCC--SCC------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC
T ss_pred ccCcccHHHHHHHHHHHcCCHH--HHHHHHHHHHhc--CCc------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 3356888888999999999999 999999997666 434 477788887764 3 3689999999998777
Q ss_pred ccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHH
Q psy7457 135 SAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFV 214 (497)
Q Consensus 135 ~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLg 214 (497)
+++ ++.-+|.++-.+|.+|+|.+|.+.+...-. . + |. ..|..+=++
T Consensus 197 ~~~--t~~~lng~A~~~l~~~~~~eAe~~L~~al~----~-~---------------------~~------~~d~LaNli 242 (290)
T PF04733_consen 197 FGS--TPKLLNGLAVCHLQLGHYEEAEELLEEALE----K-D---------------------PN------DPDTLANLI 242 (290)
T ss_dssp S----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC----C-----------------------CC------HHHHHHHHH
T ss_pred cCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----h-c---------------------cC------CHHHHHHHH
Confidence 764 578899999999999999999999988532 1 0 23 346778899
Q ss_pred HHHhhcCCCC-chhHHhhcc-ccCc
Q psy7457 215 ITLVHLRSET-QFPTLLASL-KFDV 237 (497)
Q Consensus 215 I~ll~Lg~~~-~~~~l~~~l-~e~~ 237 (497)
+|-.++|... ..+..++.| ..+|
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999999984 467777777 4444
No 136
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.94 E-value=0.24 Score=48.69 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=107.7
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
+.+-..-|+ +..+++-+.-.-|+|+++ .|..-|++.+..++-+|. .++--+|..-++.++...|...+|+.+
T Consensus 80 ~~~~~~ApT-vqnr~rLa~al~elGr~~--EA~~hy~qalsG~fA~d~-----a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 80 TEELAIAPT-VQNRYRLANALAELGRYH--EAVPHYQQALSGIFAHDA-----AMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHhhchh-HHHHHHHHHHHHHhhhhh--hhHHHHHHHhccccCCCH-----HHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 444445555 788999999999999999 999999999999777775 578889999999999999999999999
Q ss_pred HHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHH
Q psy7457 133 QYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSK 212 (497)
Q Consensus 133 ~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~K 212 (497)
+++|..=+..-.-+++..|-.+|+|.+|=.-++.... .-+ -..-|+.
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~-----------------------------~yp----g~~ar~~ 198 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS-----------------------------YYP----GPQARIY 198 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH-----------------------------hCC----CHHHHHH
Confidence 9998877777788999999999999976554433221 111 3457888
Q ss_pred HHHHHhhcCCCCchh
Q psy7457 213 FVITLVHLRSETQFP 227 (497)
Q Consensus 213 LgI~ll~Lg~~~~~~ 227 (497)
.+.-+...|...++.
T Consensus 199 Y~e~La~qgr~~ea~ 213 (251)
T COG4700 199 YAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcchhHHH
Confidence 999999988665533
No 137
>KOG1174|consensus
Probab=94.93 E-value=0.21 Score=53.92 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=88.0
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
.+++.+||.++..+.=...++..+|+.. .|+=.|...-.+ -|.+. +.-+-|-+.|...|++..|.-.=-.++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~--~A~IaFR~Aq~L-ap~rL-----~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHT--QAVIAFRTAQML-APYRL-----EIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchH--HHHHHHHHHHhc-chhhH-----HHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 6778899999999999999999999999 999999999888 88874 788888888888888877665544444
Q ss_pred HHccCC----------------------------------CChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 133 QYSAHL----------------------------------IRPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 133 ~~~~~~----------------------------------f~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
...|.. .=--.||.++||+.--|+++++|++++++-
T Consensus 396 ~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 396 RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 433220 013569999999999999999999999876
No 138
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.88 E-value=0.18 Score=55.98 Aligned_cols=130 Identities=10% Similarity=0.033 Sum_probs=94.7
Q ss_pred HHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCC
Q psy7457 19 NLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPD 98 (497)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~ 98 (497)
...|+||-......++|+-. +-+|+...|+.++++.-+|.+|+..|++. +|++......++ -+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~-------------Id~aI~htPt~~ely~~KarilKh~G~~~--~Aa~~~~~Ar~L-D~~ 260 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEY-------------IDKAIEHTPTLVELYMTKARILKHAGDLK--EAAEAMDEAREL-DLA 260 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHH-------------HHHHHhcCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhC-Chh
Confidence 34556655554444444444 44555579999999999999999999999 999999999999 666
Q ss_pred CChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC-CCChhH------HHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 99 SDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH-LIRPEH------CNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 99 d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~-~f~~~~------vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
|. -+-...|+++...|++++|.+.+..+-....+ .-+..+ ..=.++-|...|.|..|++-......
T Consensus 261 DR-----yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 261 DR-----YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hH-----HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 64 36778999999999999999998776443311 112221 12246778888999999887666554
No 139
>KOG1156|consensus
Probab=94.81 E-value=0.6 Score=52.66 Aligned_cols=229 Identities=13% Similarity=0.016 Sum_probs=150.5
Q ss_pred HHHHHHHHhhh---cccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Q psy7457 15 YSLLNLVLSQH---SIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRY 91 (497)
Q Consensus 15 ~~~~~~~~~~~---~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~i 91 (497)
++.+.-||+.+ +.-++=--=-++|+++-.. .-.+++.+.++|++..=..---+.+++.-.++. .|+++|++.
T Consensus 27 LK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~e---a~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~--eaiKcy~nA 101 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGESLAMKGLTLNCLGKKEE---AYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD--EAIKCYRNA 101 (700)
T ss_pred HHHHHHHHHhCCccchhHHhccchhhcccchHH---HHHHHHHHhccCcccchhHHHHHHHHhhhhhHH--HHHHHHHHH
Confidence 45666677643 2223323334688887554 233668888999999888888999999999999 999999999
Q ss_pred HhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC-CCChhHHHHHHHHHHhhccHHHHHHHHHHhchh
Q psy7457 92 LKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH-LIRPEHCNLYLEVLLELKRYETCVEVLRRFANI 170 (497)
Q Consensus 92 l~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~-~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~ 170 (497)
|+. =|.|. +++|.||-.-++++++.-..+.--.-++-.|+ +..|.-.-+ -+..+|.|..|+.++..+...
T Consensus 102 l~~-~~dN~-----qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av---s~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 102 LKI-EKDNL-----QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV---AQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred Hhc-CCCcH-----HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 999 88774 89999999999999999888888888886665 345544322 344468999999999887752
Q ss_pred eeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHH-----HHHHhhcCCCCchhHHhhccccCcccccccch
Q psy7457 171 EITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKF-----VITLVHLRSETQFPTLLASLKFDVEMYGTITV 245 (497)
Q Consensus 171 ~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KL-----gI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~L 245 (497)
.. . .|+ |-+..... ...++..|.. +..++++..+-..+.|
T Consensus 173 ~~--~---------------------~~s------~~~~e~se~~Ly~n~i~~E~g~~---q~ale~L~~~e~~i~D--- 217 (700)
T KOG1156|consen 173 QN--T---------------------SPS------KEDYEHSELLLYQNQILIEAGSL---QKALEHLLDNEKQIVD--- 217 (700)
T ss_pred hc--c---------------------CCC------HHHHHHHHHHHHHHHHHHHcccH---HHHHHHHHhhhhHHHH---
Confidence 21 0 011 11222111 1122333333 3344444222223444
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q psy7457 246 YLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYE 313 (497)
Q Consensus 246 y~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~ 313 (497)
+.|.. .--|+-++..|.+++|..+|.+|+.-..-|... +..+-.|+-
T Consensus 218 --kla~~------------------e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y-y~~l~~~lg 264 (700)
T KOG1156|consen 218 --KLAFE------------------ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY-YEGLEKALG 264 (700)
T ss_pred --HHHHh------------------hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH-HHHHHHHHH
Confidence 11111 223566889999999999999999876655444 666666663
No 140
>KOG3785|consensus
Probab=94.78 E-value=0.58 Score=49.80 Aligned_cols=315 Identities=16% Similarity=0.107 Sum_probs=159.1
Q ss_pred hhhcccccC---CccceehhhcccCcchhhhHH-HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCC
Q psy7457 23 SQHSIQVIN---PDESRYILSRVRTPKKIEHIL-IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPD 98 (497)
Q Consensus 23 ~~~~~~~~~---~~~~~y~~~r~~~~~~~~~~~-~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~ 98 (497)
+-.++..++ |=+-+-.+--+...+..+.|+ -+--+-|.. +-...-|.+.--.-+++ .|++-|+++|+. .|.
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~--EdqLSLAsvhYmR~HYQ--eAIdvYkrvL~d-n~e 183 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL--EDQLSLASVHYMRMHYQ--EAIDVYKRVLQD-NPE 183 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH--HHHHhHHHHHHHHHHHH--HHHHHHHHHHhc-Chh
Confidence 344444333 334444444444555555555 333333322 44555566655566788 888888888888 664
Q ss_pred CChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhc------------------cHHHH
Q psy7457 99 SDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELK------------------RYETC 160 (497)
Q Consensus 99 d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k------------------~y~~a 160 (497)
= +.+=..+|-.|.++.=++-+-+++...+..+|+. --.+|+.+--+..+= .|..+
T Consensus 184 y-----~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS--tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 184 Y-----IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS--TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred h-----hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc--HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 4 3466678888888888888888888888888753 223454443332221 11111
Q ss_pred HHHHHHhchheeeeccCCCCCCC------CCcc---------ccc--cccc--cccCCCCCCCCCcchhHHHHHHHhhcC
Q psy7457 161 VEVLRRFANIEITYFKLFPQDST------SGEE---------SNI--QITN--YTVPSDPNLVPPPEILSKFVITLVHLR 221 (497)
Q Consensus 161 l~~I~~~~~~~l~~~~~~~~D~e------~d~~---------~~~--~~~~--~~~p~~l~l~lPiDLr~KLgI~ll~Lg 221 (497)
-.++ +|--+++.+..+.-..-. -+.| .+. +..+ .+..... |-+--.| |+....+|
T Consensus 257 ~~l~-rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Ptt----P~EyilK-gvv~aalG 330 (557)
T KOG3785|consen 257 EYLC-RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTT----PYEYILK-GVVFAALG 330 (557)
T ss_pred HHHH-HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCC----hHHHHHH-HHHHHHhh
Confidence 1111 111112211110000000 0000 000 0000 1111111 4444444 34445555
Q ss_pred CCCc-------hhHHhhcc-ccCcc--cccccchhhhhHHH---HHHHHHHHHHHHhh---------hhhhHHHHHHHHh
Q psy7457 222 SETQ-------FPTLLASL-KFDVE--MYGTITVYLDIAEA---LIQEHYEAYAVQFK---------ELVYLDIAEALIQ 279 (497)
Q Consensus 222 ~~~~-------~~~l~~~l-~e~~e--e~~D~~Ly~~~~~~---~~~~~~~~~~~~~~---------~~~~ldvaeAl~e 279 (497)
+..- ++..|+-+ +...| .++. |-+.+ -|.+.|+.-+.|.. .-.-+..|.|+..
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpG-----RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPG-----RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA 405 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 4322 22222222 11111 1221 00000 13344444433322 2255789999999
Q ss_pred cccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCcccccccCCCchHHHHHHHhhhhhcccccccHHHHhhcc
Q psy7457 280 EHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLSGVVVSTVDTGSGSWWFQSMSSAMCSTVLIKDSTEHLDQLS 359 (497)
Q Consensus 280 ~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~~~~~~~~d~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (497)
.|.|.+|.++|..+.+-+--|..-...-+|+||-+.+. | .+ -|..++++---+-+| -|-.+.
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk---P-~l--------AW~~~lk~~t~~e~f------sLLqlI 467 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK---P-QL--------AWDMMLKTNTPSERF------SLLQLI 467 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC---c-hH--------HHHHHHhcCCchhHH------HHHHHH
Confidence 99999999999665555446666667889999988651 1 11 299999964444433 233333
Q ss_pred ccccccccccCCcchhHHHHHH
Q psy7457 360 LDATTVLYKTGHIPHAYQLFRV 381 (497)
Q Consensus 360 l~~~~~~~~~~~~~~ay~~~r~ 381 (497)
. -.||.-+.+++|--.+-.
T Consensus 468 A---n~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 468 A---NDCYKANEFYYAAKAFDE 486 (557)
T ss_pred H---HHHHHHHHHHHHHHhhhH
Confidence 3 589988888776554443
No 141
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.63 E-value=3.5 Score=44.28 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=63.8
Q ss_pred hhHHHhhcCC-CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHH
Q psy7457 49 EHILIQRGLS-KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASS 127 (497)
Q Consensus 49 ~~~~~~~~~~-~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~ 127 (497)
.-++..|+.- +..+.-....|+++.-.-|++. .|..+-.+++.. .|... +++|-..++|+..|+......+
T Consensus 138 n~yL~eaae~~~~~~l~v~ltrarlll~~~d~~--aA~~~v~~ll~~-~pr~~-----~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 138 NRYLAEAAELAGDDTLAVELTRARLLLNRRDYP--AARENVDQLLEM-TPRHP-----EVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHhCCCch--hHHHHHHHHHHh-CcCCh-----HHHHHHHHHHHHhccHHHHHHH
Confidence 3455444443 4455788899999999999999 999999999999 99996 8999999999999999888777
Q ss_pred HHHHHHH
Q psy7457 128 LAIAFQY 134 (497)
Q Consensus 128 le~a~~~ 134 (497)
+.+.=+.
T Consensus 210 l~~L~ka 216 (400)
T COG3071 210 LPKLRKA 216 (400)
T ss_pred HHHHHHc
Confidence 7665443
No 142
>KOG0495|consensus
Probab=94.61 E-value=1.9 Score=49.17 Aligned_cols=187 Identities=17% Similarity=0.075 Sum_probs=130.0
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHH-HHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVL-AGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al-~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
-.|. -..+|.||....+.-... ..+ .-+|+.+-+ .|... -+.-+.|+-|-..||+..|..++..||+.+|
T Consensus 545 vfp~-k~slWlra~~~ek~hgt~--Esl~Allqkav~~-~pkae-----~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 545 VFPC-KKSLWLRAAMFEKSHGTR--ESLEALLQKAVEQ-CPKAE-----ILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred hccc-hhHHHHHHHHHHHhcCcH--HHHHHHHHHHHHh-CCcch-----hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 3444 345788887777654444 444 456788888 99887 3556789999999999999999999999999
Q ss_pred CCCChhHHHH-HHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHH
Q psy7457 137 HLIRPEHCNL-YLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVI 215 (497)
Q Consensus 137 ~~f~~~~vNi-LaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI 215 (497)
.. +++=+ -.-|...+.+|++|-+++.+.-. . . |. --+-.|-+.
T Consensus 616 ns---eeiwlaavKle~en~e~eraR~llakar~-~----s---------------------gT-------eRv~mKs~~ 659 (913)
T KOG0495|consen 616 NS---EEIWLAAVKLEFENDELERARDLLAKARS-I----S---------------------GT-------ERVWMKSAN 659 (913)
T ss_pred Cc---HHHHHHHHHHhhccccHHHHHHHHHHHhc-c----C---------------------Cc-------chhhHHHhH
Confidence 73 44433 34566677899999888866332 1 1 11 123456666
Q ss_pred HHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhc
Q psy7457 216 TLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVS 295 (497)
Q Consensus 216 ~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~ 295 (497)
..=.||..+++..++ ++-...|+| .+ .+++-.|..+-..++-+.|-.-|..=+.
T Consensus 660 ~er~ld~~eeA~rll---Ee~lk~fp~--f~---------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 660 LERYLDNVEEALRLL---EEALKSFPD--FH---------------------KLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHhhhHHHHHHHH---HHHHHhCCc--hH---------------------HHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 666788888877776 444444454 33 2339999999999999999999944333
Q ss_pred CCCCChHHHHHHHHHHHHHhh
Q psy7457 296 SEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 296 ~~~y~~~~vwl~lAeCy~~l~ 316 (497)
.= -+.+.+|+.+|+.=++-+
T Consensus 714 ~c-P~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 714 KC-PNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred cC-CCCchHHHHHHHHHHHhc
Confidence 32 346667999998876644
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.60 E-value=0.27 Score=54.50 Aligned_cols=112 Identities=9% Similarity=-0.098 Sum_probs=81.9
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHH
Q psy7457 51 ILIQRGLSKDTILDNRARRLRLCDEIGLKN------RGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQA 124 (497)
Q Consensus 51 ~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~------~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~A 124 (497)
++.||...||++...+-.++..|.-...+. -.+|.+..++.+.. |.+..+ -.+-.-+|-++...|+.++|
T Consensus 364 lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al--~~~~~~--~~~~~ala~~~~~~g~~~~A 439 (517)
T PRK10153 364 LLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL--PELNVL--PRIYEILAVQALVKGKTDEA 439 (517)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc--ccCcCC--hHHHHHHHHHHHhcCCHHHH
Confidence 456677779999988888887775542222 01555555555443 323211 13444567777778999999
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 125 ASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 125 i~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
...+++|+.-.| +|.-.+.+..++...|++++|+....+..+
T Consensus 440 ~~~l~rAl~L~p---s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 440 YQAINKAIDLEM---SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999998 478899999999999999999999988765
No 144
>KOG1174|consensus
Probab=94.57 E-value=1.3 Score=48.15 Aligned_cols=201 Identities=10% Similarity=0.038 Sum_probs=134.1
Q ss_pred CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc---
Q psy7457 59 KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS--- 135 (497)
Q Consensus 59 ~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~--- 135 (497)
-|-|.+-+..-|.-|..+|+-+ +|+.....+-+- .... .+.-++|..|+.-++.-++.-.|...+..|
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~--~Ai~~l~~~p~t-~r~p------~inlMla~l~~~g~r~~~~vl~ykevvrecp~a 163 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTD--MAIETLLQVPPT-LRSP------RINLMLARLQHHGSRHKEAVLAYKEVIRECPMA 163 (564)
T ss_pred CcccHHHHHHHHHHHHHHccch--HHHHHHhcCCcc-ccch------hHHHHHHHHHhccccccHHHHhhhHHHHhcchH
Confidence 4567889999999999999999 999887665544 2222 356689999999888878888887777776
Q ss_pred ---------------------------cCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccc
Q psy7457 136 ---------------------------AHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEES 188 (497)
Q Consensus 136 ---------------------------~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~ 188 (497)
|+.|+|-.+-|.++-++-.+....++.++.-.....
T Consensus 164 L~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~----------------- 226 (564)
T KOG1174|consen 164 LQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNT----------------- 226 (564)
T ss_pred HHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhc-----------------
Confidence 556788888888888888888888777775544211
Q ss_pred cccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcc--cccccchhhhhHHHHHHHH--HH--HH
Q psy7457 189 NIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVE--MYGTITVYLDIAEALIQEH--YE--AY 261 (497)
Q Consensus 189 ~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~e--e~~D~~Ly~~~~~~~~~~~--~~--~~ 261 (497)
.+|. -++|..-+|-|..+.|+-.++...|++. .-||- +--| +| .++|+-+ |+ ..
T Consensus 227 -------~lr~------NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD--~Y----a~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 227 -------TLRC------NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD--LY----AVLLGQEGGCEQDSA 287 (564)
T ss_pred -------cCCc------cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH--HH----HHHHHhccCHhhHHH
Confidence 1244 3577888888888888888877777666 33443 3335 56 4444433 21 11
Q ss_pred HHHhh-------hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHH
Q psy7457 262 AVQFK-------ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGV 304 (497)
Q Consensus 262 ~~~~~-------~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~v 304 (497)
..-++ ..=++=-|..+++...|..|+-|-+.-+.+++-+.+++
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~al 337 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEAL 337 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHH
Confidence 11111 11223344556666777777777777777777666663
No 145
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.55 E-value=0.18 Score=46.99 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=65.9
Q ss_pred cccccccchhhhhHHHHHHHH-HHHHHHHhh------------hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCC--h
Q psy7457 237 VEMYGTITVYLDIAEALIQEH-YEAYAVQFK------------ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYN--Q 301 (497)
Q Consensus 237 ~ee~~D~~Ly~~~~~~~~~~~-~~~~~~~~~------------~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~--~ 301 (497)
+++.++.+|| ..|+.+++.. |.+++.+|. ++.-+++|.||++.|.|.+|+.-+...+.....+ .
T Consensus 5 ~~~~~~~~ly-~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 5 VPDKSPQELY-QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCCCCHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3444555577 8888888887 999999988 6789999999999999999999999999988765 6
Q ss_pred HHHHHHHHHHHHHhh
Q psy7457 302 PGVWKQLAETYEKSE 316 (497)
Q Consensus 302 ~~vwl~lAeCy~~l~ 316 (497)
+.++...|=|+.+..
T Consensus 84 dYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQD 98 (142)
T ss_pred cHHHHHHHHHHHHHh
Confidence 778888898877644
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.52 E-value=0.17 Score=51.40 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Q psy7457 12 QEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIG-LKNRGFVLAGYQR 90 (497)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG-~~~~~~Al~~y~~ 90 (497)
-+|-...|.+...-+ ...|+.+|.|++.. ++-.+..+..-|.+-...| +.+ .|..-|++
T Consensus 2 ~v~i~~m~~~~r~~g-----~~~aR~vF~~a~~~-------------~~~~~~vy~~~A~~E~~~~~d~~--~A~~Ife~ 61 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-----IEAARKVFKRARKD-------------KRCTYHVYVAYALMEYYCNKDPK--RARKIFER 61 (280)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHCC-------------CCS-THHHHHHHHHHHHTCS-HH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----hHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHHHhCCCHH--HHHHHHHH
Confidence 367777777766655 45677788887753 4456899998888866654 444 59999999
Q ss_pred HHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC-ChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 91 YLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI-RPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 91 il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f-~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
.++. +|.+. +.|..++ ...+..|+.+.|..++|+++...+... .-.-.+-+++.=...|....+.++-++...
T Consensus 62 glk~-f~~~~-~~~~~Y~----~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 62 GLKK-FPSDP-DFWLEYL----DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHH-HTT-H-HHHHHHH----HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHH-CCCCH-HHHHHHH----HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999 99884 4444444 555788999999999999999877655 444566666666677888888888777664
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.28 E-value=0.41 Score=48.04 Aligned_cols=210 Identities=20% Similarity=0.189 Sum_probs=138.9
Q ss_pred hhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHH
Q psy7457 48 IEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASS 127 (497)
Q Consensus 48 ~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~ 127 (497)
.+.++...+++|......+++|..+|..+|... -|.-.|.+.|.. .|.-+ ++-.-|.-++-..|+++.|.++
T Consensus 50 lsqlL~~~~l~~eeRA~l~fERGvlYDSlGL~~--LAR~DftQaLai-~P~m~-----~vfNyLG~Yl~~a~~fdaa~ea 121 (297)
T COG4785 50 MSQILASRALTDEERAQLLFERGVLYDSLGLRA--LARNDFSQALAI-RPDMP-----EVFNYLGIYLTQAGNFDAAYEA 121 (297)
T ss_pred HHHHHHhccCChHHHHHHHHHhcchhhhhhHHH--HHhhhhhhhhhc-CCCcH-----HHHHHHHHHHHhcccchHHHHH
Confidence 345566678888888999999999999999999 999999999999 99875 6888899999999999999999
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCc
Q psy7457 128 LAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPP 207 (497)
Q Consensus 128 le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPi 207 (497)
+...|+--|+ .+..++|==+-+| .-|||+-|.+=+.++-.- + ..|+. +..+-+-...++ =|-
T Consensus 122 Fds~~ELDp~-y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~----D-------~~DPf--R~LWLYl~E~k~---dP~ 183 (297)
T COG4785 122 FDSVLELDPT-YNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD----D-------PNDPF--RSLWLYLNEQKL---DPK 183 (297)
T ss_pred hhhHhccCCc-chHHHhccceeee-ecCchHhhHHHHHHHHhc----C-------CCChH--HHHHHHHHHhhC---CHH
Confidence 9999987775 3556666555444 358999999888877641 1 11111 000000000000 022
Q ss_pred chhHHH--------------HHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Q psy7457 208 EILSKF--------------VITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDI 273 (497)
Q Consensus 208 DLr~KL--------------gI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldv 273 (497)
+-++-| .|.-++||...+ +.+++.+....+ |-+.+ || -|.|-| +=+
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~---~n~~~---Ae-~LTEty------------FYL 243 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADAT---DNTSL---AE-HLTETY------------FYL 243 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhcc---chHHH---HH-HHHHHH------------HHH
Confidence 222222 123455555544 333333311111 11133 11 123334 889
Q ss_pred HHHHHhcccHHHHHHHHHHHhcCCCCChHH
Q psy7457 274 AEALIQEHYEAYAVQVLVLLVSSEKYNQPG 303 (497)
Q Consensus 274 aeAl~e~g~y~~Al~~l~~L~~~~~y~~~~ 303 (497)
|+-|...|.-.+|..+|...+.+..||-..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaiannVynfVE 273 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVANNVYNFVE 273 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999998888554
No 148
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.21 E-value=0.76 Score=46.66 Aligned_cols=100 Identities=21% Similarity=0.114 Sum_probs=58.7
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
-+|+|-++ ..++..+.-.|+-. .++..-++++-. .|.+. ++++..++.-+..|++..|+..+.++..-.|.
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~--~~l~~~~~~~~~-~~~d~-----~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDAD--SSLAVLQKSAIA-YPKDR-----ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred cCcchHHH-HHHHHHHHhccccc--chHHHHhhhhcc-CcccH-----HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 35555555 66666666666666 666666665555 55553 45555666666666666666666666665553
Q ss_pred CCChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 138 LIRPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 138 ~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
+|+-.|.+.=-|.+.|++..|=.-+.+.-
T Consensus 133 --d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 133 --DWEAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred --ChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 36666666666666666655555544433
No 149
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.11 E-value=0.26 Score=50.22 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccCC-CChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCc
Q psy7457 108 STRAAHVYHTARNFPQAASSLAIAFQYSAHL-IRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGE 186 (497)
Q Consensus 108 ~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~-f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~ 186 (497)
+=..|--++..|++..|.+.+..+++.||.. +..+..=-|.|.+..+|.|+.|..+..+..+-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~--------------- 208 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY--------------- 208 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC---------------
Confidence 4578888999999999999999999999964 777888889999999999999999998877521
Q ss_pred cccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc
Q psy7457 187 ESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL 233 (497)
Q Consensus 187 ~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l 233 (497)
|++.. -+|-..|||.|+.+||+.+++...++.+
T Consensus 209 -----------P~s~K---ApdallKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 209 -----------PKSPK---APDALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred -----------CCCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 22210 4577899999999999999988887655
No 150
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.10 E-value=0.22 Score=51.06 Aligned_cols=140 Identities=15% Similarity=0.119 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccc
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEES 188 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~ 188 (497)
--.|.+|+..|+++.|++++... .+.+-+-+.+.+|+..+|++.|-+.++...+|-
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----------------- 161 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----------------- 161 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 34556677777777777777542 456777777888888888888888777765420
Q ss_pred cccccccccCCCCCCCCCcchhHHHHHHH--hhcCC--CCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHH
Q psy7457 189 NIQITNYTVPSDPNLVPPPEILSKFVITL--VHLRS--ETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQ 264 (497)
Q Consensus 189 ~~~~~~~~~p~~l~l~lPiDLr~KLgI~l--l~Lg~--~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~ 264 (497)
+++ +-+.|+-+. ++.|. .+.+-..|+.+.+....-.. +.
T Consensus 162 ---------eD~--------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~--~l------------------ 204 (290)
T PF04733_consen 162 ---------EDS--------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK--LL------------------ 204 (290)
T ss_dssp ---------CCH--------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH--HH------------------
T ss_pred ---------CcH--------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH--HH------------------
Confidence 011 223344333 33444 33344445444111111122 33
Q ss_pred hhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhh
Q psy7457 265 FKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 265 ~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
.-.|-|++..|+|++|...+...+..+. +.+.+...++-|...++
T Consensus 205 ------ng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 205 ------NGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLG 249 (290)
T ss_dssp ------HHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhC
Confidence 7899999999999999999998776554 45677888888888776
No 151
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.03 E-value=0.098 Score=38.11 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=35.9
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy7457 270 YLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAET 311 (497)
Q Consensus 270 ~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeC 311 (497)
++..|.+|.+.|++++|++.|...+.....+ +.+|..+|+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~La~l 44 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHhhhC
Confidence 3889999999999999999999999987755 5569999875
No 152
>KOG0548|consensus
Probab=93.85 E-value=0.78 Score=50.68 Aligned_cols=184 Identities=12% Similarity=0.007 Sum_probs=108.7
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHH
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAH---VYHTARNFPQAASSLAIAFQY 134 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~---~Y~e~~~~~~Ai~~le~a~~~ 134 (497)
.+ +++.++-.++.+|-++|.+- .....-.+.+.. -- +....+--|+|-+++ .|+..++.+.||..|++++..
T Consensus 253 l~-~~it~~~n~aA~~~e~~~~~--~c~~~c~~a~E~-gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 253 LA-TDITYLNNIAAVYLERGKYA--ECIELCEKAVEV-GR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred Hh-hhhHHHHHHHHHHHhccHHH--HhhcchHHHHHH-hH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 46 77999999999999999988 655544443333 11 111222235555555 999999999999999999998
Q ss_pred ccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHH
Q psy7457 135 SAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFV 214 (497)
Q Consensus 135 ~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLg 214 (497)
|.. -+++-.++..+++++--.+.+- +. |+ . --+-|.| |
T Consensus 328 ~Rt----------~~~ls~lk~~Ek~~k~~e~~a~--~~------------------------pe-~----A~e~r~k-G 365 (539)
T KOG0548|consen 328 HRT----------PDLLSKLKEAEKALKEAERKAY--IN------------------------PE-K----AEEEREK-G 365 (539)
T ss_pred hcC----------HHHHHHHHHHHHHHHHHHHHHh--hC------------------------hh-H----HHHHHHH-H
Confidence 875 4555566677777766655442 10 11 0 2233444 5
Q ss_pred HHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHH
Q psy7457 215 ITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLL 293 (497)
Q Consensus 215 I~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L 293 (497)
.+.++.|+...+-.+.+.- ..+| +.+- +| ---|-||...|.|..|+.=-..-
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P-~Da~--lY------------------------sNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDP-EDAR--LY------------------------SNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCC-chhH--HH------------------------HHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666655544443322 3333 1222 55 66666666666666666654444
Q ss_pred hcCCCCChHHHHHHHHHHHHHhh
Q psy7457 294 VSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 294 ~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
+..++-..-+ |+|=|.|++.++
T Consensus 419 ieL~p~~~kg-y~RKg~al~~mk 440 (539)
T KOG0548|consen 419 IELDPNFIKA-YLRKGAALRAMK 440 (539)
T ss_pred HhcCchHHHH-HHHHHHHHHHHH
Confidence 4443333333 555566655533
No 153
>PLN02789 farnesyltranstransferase
Probab=93.62 E-value=0.52 Score=49.13 Aligned_cols=106 Identities=8% Similarity=-0.075 Sum_probs=79.3
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCH--HHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIG-LKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNF--PQAASSLA 129 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG-~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~--~~Ai~~le 129 (497)
.+++..+|+++.....|..++..+| .+. .|++.+.++++. .|.+- ++--+-+.++...++. +.+++.++
T Consensus 61 ~~aI~lnP~~ytaW~~R~~iL~~L~~~l~--eeL~~~~~~i~~-npkny-----qaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 61 ADVIRLNPGNYTVWHFRRLCLEALDADLE--EELDFAEDVAED-NPKNY-----QIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred HHHHHHCchhHHHHHHHHHHHHHcchhHH--HHHHHHHHHHHH-CCcch-----HHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 3444459999999999999999999 578 999999999999 89885 2333334444555553 67899999
Q ss_pred HHHHHccCCC-ChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 130 IAFQYSAHLI-RPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 130 ~a~~~~~~~f-~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
.+++..|..+ -|.+---+++- .++|+++|+...+.-.
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~---l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRT---LGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHH---hhhHHHHHHHHHHHHH
Confidence 9999998764 46665554443 4779999988877653
No 154
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.56 E-value=2.4 Score=49.01 Aligned_cols=228 Identities=11% Similarity=-0.086 Sum_probs=139.3
Q ss_pred ccccCCccceehhhcccCcchhhhHHHhhcC-CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHH
Q psy7457 27 IQVINPDESRYILSRVRTPKKIEHILIQRGL-SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTIL 105 (497)
Q Consensus 27 ~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~-~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~ 105 (497)
.....+++|..++.+++..- .+.+. ..+...-...-++.++.+.|++. .|.+.+++.+.. .+...+....
T Consensus 542 ~~~G~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~la~~~~~~G~~~--~A~~~~~~al~~-~~~~~~~~~~ 612 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLI------EEQHLEQLPMHEFLLRIRAQLLWEWARLD--EAEQCARKGLEV-LSNYQPQQQL 612 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHH------HHhccccccHHHHHHHHHHHHHHHhcCHH--HHHHHHHHhHHh-hhccCchHHH
Confidence 34566677777766666531 11111 11222334556788999999999 999999998887 4432222334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC---CCh--hHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCC
Q psy7457 106 DLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL---IRP--EHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQ 180 (497)
Q Consensus 106 ~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~---f~~--~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~ 180 (497)
...-.+|.++...|+.+.|...++.+....+.. ..| .-.++.+..+...|..+.|.+++....... ..
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~----~~--- 685 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE----FA--- 685 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC----Cc---
Confidence 556678999999999999999999997754332 122 112334466666788888888865532100 00
Q ss_pred CCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHH
Q psy7457 181 DSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEA 260 (497)
Q Consensus 181 D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~ 260 (497)
.... +..+..-++.+++..|+.+.+..+++......+..+. .+
T Consensus 686 -----------------~~~~----~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~--~~-------------- 728 (903)
T PRK04841 686 -----------------NNHF----LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL--MS-------------- 728 (903)
T ss_pred -----------------cchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc--hH--------------
Confidence 0001 2233445777888888877777676554111233333 22
Q ss_pred HHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCC-hHHHHHHHHHH
Q psy7457 261 YAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYN-QPGVWKQLAET 311 (497)
Q Consensus 261 ~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~-~~~vwl~lAeC 311 (497)
-.-..++..|.+|...|.+++|...+...+..-.-. ....|+..++.
T Consensus 729 ----~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~r~f~~~g~~ 776 (903)
T PRK04841 729 ----DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFISHFVIEGEA 776 (903)
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchhhhHHhccHH
Confidence 011234778999999999999999999887655432 22245444444
No 155
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.35 E-value=0.13 Score=37.45 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHH
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAH 113 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~ 113 (497)
+.+...|..|.+.|++. +|.+.|+++++. .|.|. ++...+|+
T Consensus 2 ~~~~~la~~~~~~G~~~--~A~~~~~~~l~~-~P~~~-----~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPD--EAERLLRRALAL-DPDDP-----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHHH-CcCCH-----HHHHHhhh
Confidence 35678899999999999 999999999999 99885 45555554
No 156
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.31 E-value=0.5 Score=44.03 Aligned_cols=71 Identities=7% Similarity=-0.017 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
-..+++.|.-.-+-|.+. .|.+.|+.|... +|...-. -++-=+|+-.|.+.++.+.|+..+++++.-||.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~--~A~~~le~L~~r-yP~g~ya--~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYE--EAIKQLEALDTR-YPFGEYA--EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHH--HHHHHHHHHHhc-CCCCccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 467888999999999999 999999999999 9998633 2455689999999999999999999999999986
No 157
>KOG1070|consensus
Probab=93.26 E-value=1.7 Score=52.99 Aligned_cols=217 Identities=16% Similarity=0.181 Sum_probs=142.8
Q ss_pred HhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q psy7457 75 EIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLEL 154 (497)
Q Consensus 75 elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~ 154 (497)
++++.+ .-.+-|.+++.- -|.++- -.++-||. ..+.+++++|.++-++|+...--.=.-+-+||-.-++-..
T Consensus 1436 dl~~~p--esaeDferlvrs-sPNSSi----~WI~YMaf-~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE 1507 (1710)
T KOG1070|consen 1436 DLSRAP--ESAEDFERLVRS-SPNSSI----LWIRYMAF-HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE 1507 (1710)
T ss_pred ccccCC--cCHHHHHHHHhc-CCCcch----HHHHHHHH-HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH
Confidence 444445 678899999999 898874 34466664 5789999999999999888663222335566655544333
Q ss_pred cc---HHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhh
Q psy7457 155 KR---YETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLA 231 (497)
Q Consensus 155 k~---y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~ 231 (497)
.. =+.+.+++.+.|.
T Consensus 1508 n~yG~eesl~kVFeRAcq-------------------------------------------------------------- 1525 (1710)
T KOG1070|consen 1508 NAYGTEESLKKVFERACQ-------------------------------------------------------------- 1525 (1710)
T ss_pred HhhCcHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 22 2345555555553
Q ss_pred ccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy7457 232 SLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAET 311 (497)
Q Consensus 232 ~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeC 311 (497)
|-| -| .||+-+...|...+.+.+|.++|...++.-. +...||.++|+-
T Consensus 1526 --------ycd--~~---------------------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1526 --------YCD--AY---------------------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADF 1573 (1710)
T ss_pred --------hcc--hH---------------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHH
Confidence 111 11 2335555556666777778888887777655 688899999987
Q ss_pred HHHhhhccCcccccccCCCchHHHHHHHhhh-hhcccccccHHHHhhcccccccc--ccccCCcchhHHHHHHHHHhcCC
Q psy7457 312 YEKSECLSGVVVSTVDTGSGSWWFQSMSSAM-CSTVLIKDSTEHLDQLSLDATTV--LYKTGHIPHAYQLFRVLMLKNLD 388 (497)
Q Consensus 312 y~~l~~l~~~~~~~~d~~~~~~w~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~ay~~~r~~~~~~~~ 388 (497)
+-.-. + .+--..+++-|+ +-| +++|.+|++- +| =|..||-+.|=-++=.++..-+.
T Consensus 1574 Ll~~n-----e--------~~aa~~lL~rAL~~lP-----k~eHv~~Isk---fAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1574 LLRQN-----E--------AEAARELLKRALKSLP-----KQEHVEFISK---FAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred Hhccc-----H--------HHHHHHHHHHHHhhcc-----hhhhHHHHHH---HHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 54311 0 011233444333 222 5789999887 44 46889999999999999999999
Q ss_pred CccchhhhhccccCCCccchhHHHHH
Q psy7457 389 SKVVLNLMNLITLRSSDIRIVRNTLR 414 (497)
Q Consensus 389 ~~~~wnlfn~~~~~t~~iTL~rfLl~ 414 (497)
..-+||..--..+...++..-|=|.+
T Consensus 1633 RtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1633 RTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred chhHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999777777776665554443
No 158
>PLN02789 farnesyltranstransferase
Probab=92.89 E-value=0.35 Score=50.39 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=74.0
Q ss_pred hhhHHHhhcCCCCccHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHH
Q psy7457 48 IEHILIQRGLSKDTILDNRARRLRLCDEIGLK--NRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAA 125 (497)
Q Consensus 48 ~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~--~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai 125 (497)
.-.++.+++..+|+|+.....|..++..+|.. . ++++.+.+++.. -|.+- .+--+-+-++...|+.++|+
T Consensus 91 eL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~--~el~~~~kal~~-dpkNy-----~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 91 ELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN--KELEFTRKILSL-DAKNY-----HAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH--HHHHHHHHHHHh-CcccH-----HHHHHHHHHHHHhhhHHHHH
Confidence 33455777778999999999999999999974 6 889999999999 88885 45567777788889999999
Q ss_pred HHHHHHHHHccCCCC-hhHHH
Q psy7457 126 SSLAIAFQYSAHLIR-PEHCN 145 (497)
Q Consensus 126 ~~le~a~~~~~~~f~-~~~vN 145 (497)
+.+.++++..|...+ |...-
T Consensus 163 ~~~~~~I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 163 EYCHQLLEEDVRNNSAWNQRY 183 (320)
T ss_pred HHHHHHHHHCCCchhHHHHHH
Confidence 999999998887653 55543
No 159
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.85 E-value=3.2 Score=48.01 Aligned_cols=183 Identities=11% Similarity=-0.089 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh-
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP- 141 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~- 141 (497)
.....-++.++...|++. .|...+++.+.. .|.............++..+...|+++.|...++.++...+.....
T Consensus 452 ~~~~~~~a~~~~~~g~~~--~A~~~~~~al~~-~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 452 AEFNALRAQVAINDGDPE--EAERLAELALAE-LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred HHHHHHHHHHHHhCCCHH--HHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH
Confidence 344455778889999999 999999999997 7766532223455778999999999999999999999876554332
Q ss_pred ---hHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCc--chhHHHHHH
Q psy7457 142 ---EHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPP--EILSKFVIT 216 (497)
Q Consensus 142 ---~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPi--DLr~KLgI~ 216 (497)
.-++.++.++...|++..|...+.+.-... .... .+ .. |. -+..-+|..
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~--~~~~-------------------~~-~~----~~~~~~~~~la~~ 582 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLI--EEQH-------------------LE-QL----PMHEFLLRIRAQL 582 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHhc-------------------cc-cc----cHHHHHHHHHHHH
Confidence 235778899999999999999987754321 0000 01 11 21 223345666
Q ss_pred HhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhc
Q psy7457 217 LVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVS 295 (497)
Q Consensus 217 ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~ 295 (497)
+...|+.+.+..++.....-.+..++ -. .-..+.-+|.++...|.+..|...+.....
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~--~~-------------------~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQP--QQ-------------------QLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCc--hH-------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888877665433110111111 00 001126688899999999999999888754
No 160
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.81 E-value=0.16 Score=33.74 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCC
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDS 99 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d 99 (497)
+.++..+.+|.+.|+.. +|++.|+++++. +|.+
T Consensus 1 ~a~~~~a~~~~~~g~~~--~A~~~~~~~~~~-~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYD--EAIEYFQRLIKR-YPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHH--HHHHHHHHHHHH-STTS
T ss_pred CHHHHHHHHHHHccCHH--HHHHHHHHHHHH-CcCC
Confidence 46889999999999999 999999999999 9964
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.80 E-value=0.35 Score=46.56 Aligned_cols=132 Identities=11% Similarity=-0.012 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHh-----------CCcchh
Q psy7457 14 YYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEI-----------GLKNRG 82 (497)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~el-----------G~~~~~ 82 (497)
|..-+.+.++..--...+.++|+..|.+.+..+... |.--..++.++..+.+. +...
T Consensus 40 ~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~----------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~-- 107 (203)
T PF13525_consen 40 YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS----------PKADYALYMLGLSYYKQIPGILRSDRDQTSTR-- 107 (203)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHH--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----------cchhhHHHHHHHHHHHhCccchhcccChHHHH--
Confidence 344455555555666778888999998888754332 23345666666654332 3345
Q ss_pred HHHHHHHHHHhccCCCCChh----hHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHccCCC-ChhHHHHHHH
Q psy7457 83 FVLAGYQRYLKNITPDSDPQ----TILDLS--------TRAAHVYHTARNFPQAASSLAIAFQYSAHLI-RPEHCNLYLE 149 (497)
Q Consensus 83 ~Al~~y~~il~~~~P~d~~~----~~~~~~--------k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f-~~~~vNiLaE 149 (497)
+|+..|+.+++. +|.+..- .-+..+ -.+|+.|...|....|+.-++.+++++|+.. .-+.+-++++
T Consensus 108 ~A~~~~~~li~~-yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 108 KAIEEFEELIKR-YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 899999999999 9999821 111111 2468999999999999999999999999863 3356888899
Q ss_pred HHHhhccHH
Q psy7457 150 VLLELKRYE 158 (497)
Q Consensus 150 L~i~~k~y~ 158 (497)
-|..+|..+
T Consensus 187 ~y~~l~~~~ 195 (203)
T PF13525_consen 187 AYYKLGLKQ 195 (203)
T ss_dssp HHHHTT-HH
T ss_pred HHHHhCChH
Confidence 998888776
No 162
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.73 E-value=1.5 Score=41.80 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChh
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPE 142 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~ 142 (497)
-..+.+.+..|.++|+.. .|++.|.+++.. .. . ....+++.-.+.++.+..++.......++++-..-....+|+
T Consensus 36 r~~~~~l~~~~~~~Gd~~--~A~k~y~~~~~~-~~-~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLE--EALKAYSRARDY-CT-S-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred HHHHHHHHHHHHHhhhHH--HHHHHHHHHhhh-cC-C-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 356679999999999999 999999998888 33 3 356789999999999999999999988888877666666786
Q ss_pred H---HHHHHHHH-HhhccHHHHHHHHHHh
Q psy7457 143 H---CNLYLEVL-LELKRYETCVEVLRRF 167 (497)
Q Consensus 143 ~---vNiLaEL~-i~~k~y~~al~~I~~~ 167 (497)
- +..+..|+ +..++|++|.+.+...
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 5 55666665 4568999998887653
No 163
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.64 E-value=0.23 Score=32.94 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 107 LSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 107 ~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
+.=.+|.+|.+.|+.++|++.|+++++.+|+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 34578999999999999999999999999963
No 164
>KOG4162|consensus
Probab=92.44 E-value=1.5 Score=50.43 Aligned_cols=127 Identities=17% Similarity=0.025 Sum_probs=102.6
Q ss_pred HHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCC
Q psy7457 20 LVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDS 99 (497)
Q Consensus 20 ~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d 99 (497)
+..+.......|++++.-|+-- |...+|.....++.|+.++...|+.. .|.+.|...+-. -|.+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~E-------------a~~~~~l~~~~~~~~G~~~~~~~~~~--EA~~af~~Al~l-dP~h 717 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLE-------------ASKIDPLSASVYYLRGLLLEVKGQLE--EAKEAFLVALAL-DPDH 717 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHH-------------HHhcchhhHHHHHHhhHHHHHHHhhH--HHHHHHHHHHhc-CCCC
Confidence 3333334445566666655544 44557888999999999999999999 999999999999 8887
Q ss_pred ChhhHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 100 DPQTILDLSTRAAHVYHTARNFPQAAS--SLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 100 ~~~~~~~~~k~LA~~Y~e~~~~~~Ai~--~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
. .....+|+++.+.|+..-|.. ++..++..-|.. .+----|.+.+.++|+.++|.+.......
T Consensus 718 v-----~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n--~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 718 V-----PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN--HEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred c-----HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 5 689999999999999988888 999999987754 34556788999999999999999977654
No 165
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=1.7 Score=44.94 Aligned_cols=107 Identities=12% Similarity=0.032 Sum_probs=90.4
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcC---CHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTAR---NFPQAASSLA 129 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~---~~~~Ai~~le 129 (497)
.....-||.|.+-.+--+..|...|+.. -|...|.+.+++ -|.+. ++.--+|++++-+. ...+|.+++.
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~--~A~~AY~~A~rL-~g~n~-----~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRAS--DALLAYRNALRL-AGDNP-----EILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchh--HHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4455679999999999999999999999 999999999999 99986 67777887766433 3479999999
Q ss_pred HHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 130 IAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 130 ~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
+++..-|. +-..+=+|+--+...++|++|+..-+..-.
T Consensus 218 ~al~~D~~--~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 218 QALALDPA--NIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 99998774 456777888889999999999998877664
No 166
>KOG1125|consensus
Probab=92.14 E-value=2.7 Score=46.92 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChh
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPE 142 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~ 142 (497)
+.-=++-...+.+-|... .|+=+|+...+. -|.+- ++=+.|..+.-++.+...||.+|++|++--|.. .+
T Consensus 285 ~pdPf~eG~~lm~nG~L~--~A~LafEAAVkq-dP~ha-----eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N--le 354 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLS--EAALAFEAAVKQ-DPQHA-----EAWQKLGITQAENENEQNAISALRRCLELDPTN--LE 354 (579)
T ss_pred CCChHHHHHHHHhcCCch--HHHHHHHHHHhh-ChHHH-----HHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc--HH
Confidence 334467778888899999 999999999999 88774 788899999999999999999999999988854 45
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHh
Q psy7457 143 HCNLYLEVLLELKRYETCVEVLRRF 167 (497)
Q Consensus 143 ~vNiLaEL~i~~k~y~~al~~I~~~ 167 (497)
.+--|+==|+-.+.=.+|++.++.-
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555666666667777888877653
No 167
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.77 E-value=0.46 Score=31.70 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 106 DLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 106 ~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
++...+|.+|...|++++|++.|++++..+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35678999999999999999999999999885
No 168
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.57 E-value=0.11 Score=36.33 Aligned_cols=32 Identities=6% Similarity=-0.180 Sum_probs=28.6
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHH
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVL 85 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al 85 (497)
+.+|+..+|+|.+.+...+.+|...|++. +|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~--~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYE--EAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHH--hhc
Confidence 45677789999999999999999999999 875
No 169
>KOG1915|consensus
Probab=91.44 E-value=7.5 Score=43.09 Aligned_cols=190 Identities=15% Similarity=0.130 Sum_probs=125.3
Q ss_pred cCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC-hhhHHHHHH----HHHHHHHhcCCHHHHHHHHHH
Q psy7457 56 GLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD-PQTILDLST----RAAHVYHTARNFPQAASSLAI 130 (497)
Q Consensus 56 ~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~-~~~~~~~~k----~LA~~Y~e~~~~~~Ai~~le~ 130 (497)
-..+|.|+|..|+-..|-...|+.. +-++.|++.... .|+-+ ...|-..+= -.-=.=.+..|++.+.++|..
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~--~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKD--RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHH--HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3579999999999999999999999 999999999999 66644 222222111 011111378999999999999
Q ss_pred HHHHccC-CCChhHHH-HHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcc
Q psy7457 131 AFQYSAH-LIRPEHCN-LYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPE 208 (497)
Q Consensus 131 a~~~~~~-~f~~~~vN-iLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiD 208 (497)
+++-.|+ .|+.+-+= |+|..-|.+.....|-+++-..-| .|..+.-+
T Consensus 392 ~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG------------------------~cPK~KlF------- 440 (677)
T KOG1915|consen 392 CLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG------------------------KCPKDKLF------- 440 (677)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc------------------------cCCchhHH-------
Confidence 9999987 59988864 445555555665555555533332 02111111
Q ss_pred hhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHH
Q psy7457 209 ILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAV 287 (497)
Q Consensus 209 Lr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al 287 (497)
-+..-.=++|++.+-...+...+ +.+||.... + .--|+-=...|..+.|-
T Consensus 441 --k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~---W------------------------~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 441 --KGYIELELQLREFDRCRKLYEKFLEFSPENCYA---W------------------------SKYAELETSLGDTDRAR 491 (677)
T ss_pred --HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH---H------------------------HHHHHHHHHhhhHHHHH
Confidence 11122234566777777777666 667764433 2 44455556678888899
Q ss_pred HHHHHHhcCCCCChHH-HHHHH
Q psy7457 288 QVLVLLVSSEKYNQPG-VWKQL 308 (497)
Q Consensus 288 ~~l~~L~~~~~y~~~~-vwl~l 308 (497)
-+|+..++.+.-+-|. +|..+
T Consensus 492 aifelAi~qp~ldmpellwkaY 513 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAY 513 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHh
Confidence 9999999888877666 44443
No 170
>KOG1127|consensus
Probab=91.38 E-value=2.9 Score=49.49 Aligned_cols=198 Identities=10% Similarity=-0.067 Sum_probs=121.2
Q ss_pred cCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHH---------
Q psy7457 56 GLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAAS--------- 126 (497)
Q Consensus 56 ~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~--------- 126 (497)
+--||.|.-.....|..-++.|+.. .++..|.---.. .-+..+.--+.+..-.-.....+|+.+.-|.
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii--~~~~lfaHs~el-~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRII--ERLILFAHSDEL-CSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHH--HHHHHHHhhHHh-hccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 3349999999999999999999988 888888762222 2233222223455555566666666655444
Q ss_pred -HHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCC
Q psy7457 127 -SLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVP 205 (497)
Q Consensus 127 -~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~l 205 (497)
+++..|..+|+. --..-+.+-++=-++.|+.|+..-.+.+++.-+..+. ..+
T Consensus 954 ~al~~yf~~~p~~--~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~---------------------sqy---- 1006 (1238)
T KOG1127|consen 954 LALSYYFLGHPQL--CFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDE---------------------SQY---- 1006 (1238)
T ss_pred HHHHHHHhcCcch--hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------hhh----
Confidence 455566666653 1234455555556789999999998988754221111 112
Q ss_pred CcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHH
Q psy7457 206 PPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEA 284 (497)
Q Consensus 206 PiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~ 284 (497)
|+ +.--+|..++.+|..+.+..-+..+ .+.-|++-. ++++ ++=.+.|.
T Consensus 1007 nv-ak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~g----------------------------t~l~--lFfkndf~ 1055 (1238)
T KOG1127|consen 1007 NV-AKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRG----------------------------TDLT--LFFKNDFF 1055 (1238)
T ss_pred hh-hhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhh----------------------------hhHH--HHHHhHHH
Confidence 32 3333555555666666655555544 333333333 3333 35578999
Q ss_pred HHHHHHHHHhcCCCCChH--HHHHHHHHHHHH
Q psy7457 285 YAVQVLVLLVSSEKYNQP--GVWKQLAETYEK 314 (497)
Q Consensus 285 ~Al~~l~~L~~~~~y~~~--~vwl~lAeCy~~ 314 (497)
+++++|+.++...+-+.. .+.-+.|-|..+
T Consensus 1056 ~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1056 SSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 999999988876665544 455677777544
No 171
>KOG0543|consensus
Probab=91.31 E-value=2.3 Score=45.66 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCc
Q psy7457 107 LSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGE 186 (497)
Q Consensus 107 ~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~ 186 (497)
..|+=...|++.|++..|+..|++|+..-....+..+ ..++...-++..|
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~------------ee~~~~~~~k~~~------------------ 259 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE------------EEQKKAEALKLAC------------------ 259 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH------------HHHHHHHHHHHHH------------------
Confidence 5566667888888888888888877764433222211 1222222222222
Q ss_pred cccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHh
Q psy7457 187 ESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQF 265 (497)
Q Consensus 187 ~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~ 265 (497)
.--|+.|+++|+....+-...... ..++-..-- ||
T Consensus 260 -----------------------~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA--Ly------------------- 295 (397)
T KOG0543|consen 260 -----------------------HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA--LY------------------- 295 (397)
T ss_pred -----------------------hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH--HH-------------------
Confidence 223577999999888766666665 666666667 66
Q ss_pred hhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhh
Q psy7457 266 KELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 266 ~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
-=|.||...|+|+.|...|...+..+..| -++-..++.|-++..
T Consensus 296 ------RrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 296 ------RRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIR 339 (397)
T ss_pred ------HHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHH
Confidence 67999999999999999999999999988 444777777755543
No 172
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.20 E-value=0.81 Score=40.97 Aligned_cols=67 Identities=16% Similarity=-0.014 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 62 ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 62 n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
-.+...+.+..+.+.|++. +|++..++++.. -|.+. .+-+.+-+.|...|+...|++.|+.+-....
T Consensus 61 ~~~~~~~l~~~~~~~~~~~--~a~~~~~~~l~~-dP~~E-----~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYE--EALRLLQRALAL-DPYDE-----EAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHH-STT-H-----HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH--HHHHHHHHHHhc-CCCCH-----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3566677788899999999 999999999999 99986 6889999999999999999999999877654
No 173
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.18 E-value=0.36 Score=32.26 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCC
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDS 99 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d 99 (497)
+.++.++.+|.+.|++. +|++.|++.++. .|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~--~A~~~~~~al~l-~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYE--EAIEYFEKALEL-DPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HH--HHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHHHHHH-CcCC
Confidence 46788999999999999 999999999999 8864
No 174
>KOG3785|consensus
Probab=91.00 E-value=2.6 Score=45.10 Aligned_cols=44 Identities=20% Similarity=0.112 Sum_probs=30.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHH-HhcCCCCChHHHHHHHHHHHHHhh
Q psy7457 271 LDIAEALIQEHYEAYAVQVLVL-LVSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~~-L~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
+.+|....-.-+|.+|+++|.. |+++++|--. -.-+|=||.|+.
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al--NVy~ALCyyKlD 199 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL--NVYMALCYYKLD 199 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh--HHHHHHHHHhcc
Confidence 5566666677789999999976 4555556543 445677988843
No 175
>KOG1173|consensus
Probab=90.92 E-value=1.1 Score=49.79 Aligned_cols=116 Identities=9% Similarity=-0.046 Sum_probs=98.9
Q ss_pred hhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHhcCCHHHHH
Q psy7457 48 IEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQ--TILDLSTRAAHVYHTARNFPQAA 125 (497)
Q Consensus 48 ~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~--~~~~~~k~LA~~Y~e~~~~~~Ai 125 (497)
.+-..-||-...|.|.-.+-+-+.+.-+.+.++ +|..-|++.+.. .+....+ .|..+.-.|++.|..+|..+.||
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~--~A~~~f~~~l~~-ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYP--EALKYFQKALEV-IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhH--HHHHHHHHHHHH-hhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 444557788888898888889999999999999 999999999976 5544433 37788999999999999999999
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 126 SSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 126 ~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
..|+.++..+|. +|+-.-.++=.|..+|.++.|++-..+.-
T Consensus 476 ~~~q~aL~l~~k--~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPK--DASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCC--chhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999994 57788888888999999999999987743
No 176
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.91 E-value=0.29 Score=33.13 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCC
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPD 98 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~ 98 (497)
+.+..++.+|..+|++. +|++.|++.++. -|.
T Consensus 2 ~~~~~~g~~~~~~~~~~--~A~~~~~~al~~-~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYE--EALEYYQRALEL-DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HH--HHHHHHHHHHHH-STT
T ss_pred HHHHHHHHHHHHhCCch--HHHHHHHHHHHH-CcC
Confidence 46789999999999999 999999999999 775
No 177
>KOG0495|consensus
Probab=90.69 E-value=4.2 Score=46.45 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=49.8
Q ss_pred HHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHH------HHHHHHHhh--hhhhHHHHHHHHhcccHHH
Q psy7457 214 VITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEH------YEAYAVQFK--ELVYLDIAEALIQEHYEAY 285 (497)
Q Consensus 214 gI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~------~~~~~~~~~--~~~~ldvaeAl~e~g~y~~ 285 (497)
.-.=++.|+.++++.+++.-.+.-...|- |+ ..-+-++-+ .--+...-. -.|.+.||..|.....|+.
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~--LW--aEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGL--LW--AEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccch--hH--HHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 33446788888888776544233345566 76 001111111 000000000 2388999999999999999
Q ss_pred HHHHHHHHhcCCCCChHH
Q psy7457 286 AVQVLVLLVSSEKYNQPG 303 (497)
Q Consensus 286 Al~~l~~L~~~~~y~~~~ 303 (497)
|..-|...++-...+-++
T Consensus 836 ar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 836 AREWFERAVKKDPDNGDA 853 (913)
T ss_pred HHHHHHHHHccCCccchH
Confidence 999998887766554433
No 178
>KOG0553|consensus
Probab=90.31 E-value=1.4 Score=45.78 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=72.8
Q ss_pred HHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q psy7457 74 DEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLE 153 (497)
Q Consensus 74 ~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~ 153 (497)
.+-|+|. .|+..|.+.+++ .|.|. -+.-.=|..|.++|+.+.||+--+.++...|.. |...--|--.|..
T Consensus 92 m~~~~Y~--eAv~kY~~AI~l-~P~nA-----VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~ 161 (304)
T KOG0553|consen 92 MKNKDYQ--EAVDKYTEAIEL-DPTNA-----VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLA 161 (304)
T ss_pred HHhhhHH--HHHHHHHHHHhc-CCCcc-----hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHc
Confidence 4557888 999999999999 99997 466677889999999999999999999988865 5566677778999
Q ss_pred hccHHHHHHHHHHhc
Q psy7457 154 LKRYETCVEVLRRFA 168 (497)
Q Consensus 154 ~k~y~~al~~I~~~~ 168 (497)
+|+|.+|++.-++.-
T Consensus 162 ~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKAL 176 (304)
T ss_pred cCcHHHHHHHHHhhh
Confidence 999999999977654
No 179
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.15 E-value=0.56 Score=32.79 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy7457 108 STRAAHVYHTARNFPQAASSLAIAFQ 133 (497)
Q Consensus 108 ~k~LA~~Y~e~~~~~~Ai~~le~a~~ 133 (497)
+..||.+|.+.|+.++|++.|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45799999999999999999999664
No 180
>KOG1538|consensus
Probab=89.74 E-value=5 Score=45.83 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHhcCC----CCChHH
Q psy7457 269 VYLDIAEALIQEHYEAYAVQVLVLLVSSE----KYNQPG 303 (497)
Q Consensus 269 ~~ldvaeAl~e~g~y~~Al~~l~~L~~~~----~y~~~~ 303 (497)
-.-+.-.||-..|.-.+|.++++.|..+. .|++++
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~ 857 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAA 857 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccch
Confidence 44677899999999999999999998764 366555
No 181
>PRK15331 chaperone protein SicA; Provisional
Probab=89.46 E-value=0.96 Score=43.17 Aligned_cols=68 Identities=7% Similarity=-0.108 Sum_probs=32.2
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQ 133 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~ 133 (497)
-||.|.++.+.-+..|+.+|++. +|++.|-...-. -+.|+. -.=++|..|...|+...|.+.++.+++
T Consensus 66 ~d~~n~~Y~~GLaa~~Q~~k~y~--~Ai~~Y~~A~~l-~~~dp~-----p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 66 YDFYNPDYTMGLAAVCQLKKQFQ--KACDLYAVAFTL-LKNDYR-----PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hCcCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc-ccCCCC-----ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44444555555555555555555 555555444444 343331 122445555555555555555544444
No 182
>KOG4642|consensus
Probab=89.15 E-value=0.91 Score=46.05 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=69.5
Q ss_pred CccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q psy7457 32 PDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRA 111 (497)
Q Consensus 32 ~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~L 111 (497)
.+.||=||||+|.+ +|+...++-.||.-|-++.++. .+.+.-.+.++. .|..- ..-=-+
T Consensus 26 y~~ai~~y~raI~~-------------nP~~~~Y~tnralchlk~~~~~--~v~~dcrralql-~~N~v-----k~h~fl 84 (284)
T KOG4642|consen 26 YDDAIDCYSRAICI-------------NPTVASYYTNRALCHLKLKHWE--PVEEDCRRALQL-DPNLV-----KAHYFL 84 (284)
T ss_pred hchHHHHHHHHHhc-------------CCCcchhhhhHHHHHHHhhhhh--hhhhhHHHHHhc-ChHHH-----HHHHHH
Confidence 35677789998886 8999999999999999999999 999999999999 77553 233346
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHc
Q psy7457 112 AHVYHTARNFPQAASSLAIAFQYS 135 (497)
Q Consensus 112 A~~Y~e~~~~~~Ai~~le~a~~~~ 135 (497)
.....+...++.||..+.++.+-.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHH
Confidence 677789999999999999997743
No 183
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.15 E-value=0.85 Score=31.53 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhH
Q psy7457 106 DLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEH 143 (497)
Q Consensus 106 ~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~ 143 (497)
..+..||.+|...|+.++|..++++++..+...++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~H 40 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDH 40 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999998876665443
No 184
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.84 E-value=1.7 Score=43.36 Aligned_cols=62 Identities=24% Similarity=0.169 Sum_probs=48.6
Q ss_pred HHHHHHHhh--------hhhhHHHHHHHHhcccHHHHHHHHHHHhcC---CCCC--hHHHHHHHHHHHHHhhhcc
Q psy7457 258 YEAYAVQFK--------ELVYLDIAEALIQEHYEAYAVQVLVLLVSS---EKYN--QPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 258 ~~~~~~~~~--------~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~---~~y~--~~~vwl~lAeCy~~l~~l~ 319 (497)
...+..+|+ ..|.+++|+.|+..|+|+.|+++|.++..+ +... ...+-.++.+|+.+++..+
T Consensus 161 L~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 161 LEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 355556666 568999999999999999999999999654 3333 5558888999999887544
No 185
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.51 E-value=12 Score=31.81 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
...+.+...+...|+.. .|+..+.+.++. .|... ......++..|...++...|+..+..++...|.
T Consensus 168 ~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 168 EALLALGALLEALGRYE--EALELLEKALKL-NPDDD----AEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHhhhHHHHhcCHH--HHHHHHHHHHhh-Ccccc----hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 33333333444444444 444444444444 33310 133444444444444444444444444444443
No 186
>KOG4234|consensus
Probab=88.02 E-value=0.84 Score=45.38 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=41.5
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD 100 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~ 100 (497)
|++|+--+|++..++.+||.+|.++..+. .|++-|++|+.. .|...
T Consensus 157 csKaiel~pty~kAl~RRAeayek~ek~e--ealeDyKki~E~-dPs~~ 202 (271)
T KOG4234|consen 157 CSKAIELNPTYEKALERRAEAYEKMEKYE--EALEDYKKILES-DPSRR 202 (271)
T ss_pred HHhhHhcCchhHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHh-CcchH
Confidence 68888899999999999999999999999 999999999999 78764
No 187
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.79 E-value=1.4 Score=29.66 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 107 LSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 107 ~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
+.-.+|..|..+|++++|+..|+++++..|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4567899999999999999999999998885
No 188
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.30 E-value=1.5 Score=29.42 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 107 LSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 107 ~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
+.-.+|.+|.+.|+.++|++.|+++++-.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 556899999999999999999999999877
No 189
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=19 Score=37.62 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCc
Q psy7457 107 LSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGE 186 (497)
Q Consensus 107 ~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~ 186 (497)
..=.-|+-.++.+++..|..++..++...|+. -+-.-.|+|.|+..|+.+.|-.++...-...
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--------------- 198 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQA--------------- 198 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccc---------------
Confidence 34455667889999999999999999999987 5668889999999999999988886644200
Q ss_pred cccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhh
Q psy7457 187 ESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFK 266 (497)
Q Consensus 187 ~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~ 266 (497)
..+- +..++.|+- .+.+.....+...+.+.+..+| +|++.=
T Consensus 199 -----------~~~~----~~~l~a~i~-ll~qaa~~~~~~~l~~~~aadP---dd~~aa-------------------- 239 (304)
T COG3118 199 -----------QDKA----AHGLQAQIE-LLEQAAATPEIQDLQRRLAADP---DDVEAA-------------------- 239 (304)
T ss_pred -----------hhhH----HHHHHHHHH-HHHHHhcCCCHHHHHHHHHhCC---CCHHHH--------------------
Confidence 1111 344444442 2445555555555544444444 454566
Q ss_pred hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHhh
Q psy7457 267 ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEK-YNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 267 ~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~-y~~~~vwl~lAeCy~~l~ 316 (497)
++.|+.|-..|.++.|+..|-.++..+. ++++.+-.++=+.++.++
T Consensus 240 ----~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 240 ----LALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 8999999999999999998887777655 778888777766665544
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=86.94 E-value=5.7 Score=37.99 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=79.8
Q ss_pred CccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC
Q psy7457 60 DTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI 139 (497)
Q Consensus 60 p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f 139 (497)
++..+.++..|-=.-+.|++. .|..-|+-+.-+ -|.+. +...-||.+|+..++.++|+..|.-++.--++..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~--eA~~~F~~L~~~-d~~n~-----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLD--EAETFFRFLCIY-DFYNP-----DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CcCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 355899999999999999999 999999999998 88885 6888999999999999999999999998654332
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 140 RPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 140 ~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
.+ .=-.++=|+.+|+...|.+.+....
T Consensus 106 ~p--~f~agqC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 106 RP--VFFTGQCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred Cc--cchHHHHHHHhCCHHHHHHHHHHHH
Confidence 22 1124555677888888888776544
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=86.92 E-value=2.3 Score=46.49 Aligned_cols=64 Identities=6% Similarity=-0.041 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh-hHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 106 DLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP-EHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 106 ~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~-~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
+..-.++-.|.+.|++++|+..|+++++-.|+...- ....-++-.|..+|++++|+..+++...
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677899999999999999999999999999986432 2357788899999999999999998775
No 192
>KOG0547|consensus
Probab=86.88 E-value=4.8 Score=44.62 Aligned_cols=77 Identities=8% Similarity=-0.024 Sum_probs=69.6
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
-.|+.-||.|+=.+-+.+.+.-+.+.+. .+|.+|+...+. +|.-+ ++-.--|++.-+++++.+|++.|..|+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~--~~m~~Fee~kkk-FP~~~-----Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIA--ESMKTFEEAKKK-FPNCP-----EVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh-CCCCc-----hHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 4566779999999999999888889999 999999999999 99887 788899999999999999999999999
Q ss_pred HHccC
Q psy7457 133 QYSAH 137 (497)
Q Consensus 133 ~~~~~ 137 (497)
+--|.
T Consensus 490 ~LE~~ 494 (606)
T KOG0547|consen 490 ELEPR 494 (606)
T ss_pred hhccc
Confidence 97655
No 193
>KOG0550|consensus
Probab=86.74 E-value=2.6 Score=45.66 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=81.1
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
.-+-+.|-=||.-+|.++.- +...|..+++.||.++-.+|+.+ .|+.--...+++ |+ ..+..+
T Consensus 262 ~G~y~~A~E~Yteal~idP~---------n~~~naklY~nra~v~~rLgrl~--eaisdc~~Al~i----D~--syikal 324 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPS---------NKKTNAKLYGNRALVNIRLGRLR--EAISDCNEALKI----DS--SYIKAL 324 (486)
T ss_pred ccchhHHHHHHHHhhcCCcc---------ccchhHHHHHHhHhhhcccCCch--hhhhhhhhhhhc----CH--HHHHHH
Confidence 34555666677777765322 13346778999999999999999 999999999999 42 356788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLEL 154 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~ 154 (497)
..-|..|..+++.+.|++-|+.+.+.-.+ .++-.+|-+.-..+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s---~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD---CEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHH
Confidence 88899999999999999999999997765 45555555544444
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.73 E-value=8.1 Score=39.54 Aligned_cols=100 Identities=11% Similarity=-0.004 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh-h
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP-E 142 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~-~ 142 (497)
+-.++-|.=+-.-|++. .|..+|+.-++. +|.++- .-+.-=.|.+.|+.+|+.++|+..|..+...+|+.=.- +
T Consensus 142 ~~~Y~~A~~~~ksgdy~--~A~~~F~~fi~~-YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 142 TKLYNAALDLYKSGDYA--EAEQAFQAFIKK-YPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred hHHHHHHHHHHHcCCHH--HHHHHHHHHHHc-CCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 33788888888999999 999999999999 999872 22455579999999999999999999999999987544 5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 143 HCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 143 ~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
-+=-|+.-+..+++-++|-.++...-
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 57778888888999999988887655
No 195
>KOG0548|consensus
Probab=86.72 E-value=1.3 Score=49.02 Aligned_cols=79 Identities=9% Similarity=0.048 Sum_probs=69.4
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIA 131 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a 131 (497)
.+||+.-||+|...+=.||.-|-.+|.+. .|++.-++.+++ -|.. +--.+|. +.++.-++++.+|.+.|+.+
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~--~aL~Da~~~ieL-~p~~----~kgy~RK-g~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYP--EALKDAKKCIEL-DPNF----IKAYLRK-GAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHH--HHHHHHHHHHhc-CchH----HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999 999999999999 6654 3446666 77888899999999999999
Q ss_pred HHHccCC
Q psy7457 132 FQYSAHL 138 (497)
Q Consensus 132 ~~~~~~~ 138 (497)
+++.|+.
T Consensus 453 le~dp~~ 459 (539)
T KOG0548|consen 453 LELDPSN 459 (539)
T ss_pred HhcCchh
Confidence 9999854
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.70 E-value=0.8 Score=31.96 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=29.9
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHH
Q psy7457 87 GYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAAS 126 (497)
Q Consensus 87 ~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~ 126 (497)
.|++.++. -|.+. ++...+|.+|...|+.++|++
T Consensus 1 ~y~kAie~-~P~n~-----~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-NPNNA-----EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-CCCCH-----HHHHHHHHHHHHCcCHHhhcC
Confidence 37889999 99886 788899999999999999973
No 197
>KOG3617|consensus
Probab=85.66 E-value=29 Score=41.06 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=81.1
Q ss_pred HhhhcccccCCccceehhhcccCcchhhhHH----------HhhcCCCCccHH----H------HHHHH-HHHHHhCCcc
Q psy7457 22 LSQHSIQVINPDESRYILSRVRTPKKIEHIL----------IQRGLSKDTILD----N------RARRL-RLCDEIGLKN 80 (497)
Q Consensus 22 ~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~----------~~~~~~~p~n~~----~------~~~RA-~Ly~elG~~~ 80 (497)
|+||=..+-.--||+-.|-|+.+-+....+| ..|-.|-|.|.- + .++|| .||.+.|.++
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchH
Confidence 4444444444456666666665544222222 334445544321 1 22333 4666667777
Q ss_pred hhHHHHH---------HHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHc----------
Q psy7457 81 RGFVLAG---------YQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLA------IAFQYS---------- 135 (497)
Q Consensus 81 ~~~Al~~---------y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le------~a~~~~---------- 135 (497)
+|++- .+-|.+..-|.+++ ++++.-|..+.+..++++|++++- .|+.-|
T Consensus 1053 --kALelAF~tqQf~aL~lIa~DLd~~sDp----~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee 1126 (1416)
T KOG3617|consen 1053 --KALELAFRTQQFSALDLIAKDLDAGSDP----KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEE 1126 (1416)
T ss_pred --HHHHHHHhhcccHHHHHHHHhcCCCCCH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 77653 22333332455554 699999999999999999999864 444434
Q ss_pred ------cCC---C----ChhHHHHHHHHHHhhccHHHHHHHHHH
Q psy7457 136 ------AHL---I----RPEHCNLYLEVLLELKRYETCVEVLRR 166 (497)
Q Consensus 136 ------~~~---f----~~~~vNiLaEL~i~~k~y~~al~~I~~ 166 (497)
|.. + .-.-+.-++|+.+++|.|.-|-+-..+
T Consensus 1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 111 1 123477889999999999887765543
No 198
>KOG2047|consensus
Probab=85.29 E-value=4.7 Score=45.98 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=86.3
Q ss_pred CCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc-
Q psy7457 57 LSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS- 135 (497)
Q Consensus 57 ~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~- 135 (497)
+-||+|++-..+|-.+++ |... +-+..|....+.|.|.-..-.+..+--.+|+.|-..|+++.|..+++++..-.
T Consensus 343 RQn~~nV~eW~kRV~l~e--~~~~--~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLYE--GNAA--EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred hcCCccHHHHHhhhhhhc--CChH--HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 448999999999999986 6677 88999999999877766544455677899999999999999999999998843
Q ss_pred cCCCChhH-HHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 136 AHLIRPEH-CNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 136 ~~~f~~~~-vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
+..=+.+. ---.+|+=+..++++.|++++++.+.
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 43322222 12246777888999999999999875
No 199
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.75 E-value=4.6 Score=34.41 Aligned_cols=45 Identities=16% Similarity=-0.018 Sum_probs=34.6
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCC
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDS 99 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d 99 (497)
+.++...+|+|++.++.-|..+-.-|++. .|++.+..+++. -|..
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e--~Al~~Ll~~v~~-dr~~ 55 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYE--EALDQLLELVRR-DRDY 55 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HH--HHHHHHHHHHCC--TTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-Cccc
Confidence 45667788888888888888888888888 888888888888 6655
No 200
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.73 E-value=6.5 Score=38.81 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=68.3
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc-c
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS-A 136 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~-~ 136 (497)
.||.-.=++|.| .|+ ..|++-|.++-+. |.-+ + .++.-.||..|. ..|.++|+.+|-++++-+ +
T Consensus 108 ~dP~llYy~Wsr------~~d---~~A~~~fL~~E~~--~~l~--t-~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~ 172 (203)
T PF11207_consen 108 QDPYLLYYHWSR------FGD---QEALRRFLQLEGT--PELE--T-AELQYALATYYT-KRDPEKTIQLLLRALELSNP 172 (203)
T ss_pred CCccHHHHHhhc------cCc---HHHHHHHHHHcCC--CCCC--C-HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC
Confidence 455555555544 233 3688888887776 4332 1 368888998887 789999999999999966 4
Q ss_pred C-CCChhHHHHHHHHHHhhccHHHHHH
Q psy7457 137 H-LIRPEHCNLYLEVLLELKRYETCVE 162 (497)
Q Consensus 137 ~-~f~~~~vNiLaEL~i~~k~y~~al~ 162 (497)
+ .|+.+-+--|+.+|..+|+|+.|--
T Consensus 173 ~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 173 DDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 5 7999999999999999999998743
No 201
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.63 E-value=24 Score=30.03 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=87.8
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAH-VYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~-~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
..+.........+..+...|.+. .|++.+.+.+.. .|.+. ........ .|...++...|+..++.++...|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYE--EALELLEKALAL-DPDPD-----LAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHH--HHHHHHHHHHcC-CCCcc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455555556666666666666 666666666665 44432 01111222 56666666666666666655333
Q ss_pred C-CCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHH
Q psy7457 137 H-LIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVI 215 (497)
Q Consensus 137 ~-~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI 215 (497)
. .........+...+...+.++.++..+....... |.. .......++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------------------~~~-----~~~~~~~~~~ 210 (291)
T COG0457 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLN--------------------------PDD-----DAEALLNLGL 210 (291)
T ss_pred CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--------------------------ccc-----chHHHHHhhH
Confidence 2 1112223333333445556666666555544311 010 1233344455
Q ss_pred HHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHh
Q psy7457 216 TLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLV 294 (497)
Q Consensus 216 ~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~ 294 (497)
+....+....+...+... ...+. ... .+ ...+..+...|.+..|...+....
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPD-NAE--AL------------------------YNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcc-cHH--HH------------------------hhHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555444433333222 22211 122 23 666666667777888888888777
Q ss_pred cCCCC
Q psy7457 295 SSEKY 299 (497)
Q Consensus 295 ~~~~y 299 (497)
.....
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 77653
No 202
>KOG2376|consensus
Probab=83.72 E-value=12 Score=42.23 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=103.0
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
++-.-+.....++.+..+. ... +|.+..+..-.. .|... ..++=-.|++-+.+|+.+.|+++|..+...-.+
T Consensus 337 ~p~~~~~~ll~~~t~~~~~-~~~--ka~e~L~~~~~~-~p~~s----~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 337 SPESLFPILLQEATKVREK-KHK--KAIELLLQFADG-HPEKS----KVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred CchHHHHHHHHHHHHHHHH-HHh--hhHHHHHHHhcc-CCchh----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 3334467778888888888 778 888888888888 77775 346667788888999999999999855532211
Q ss_pred C-----CChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHH
Q psy7457 138 L-----IRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSK 212 (497)
Q Consensus 138 ~-----f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~K 212 (497)
. ....-|-.+..||+..+.-.-|..++....+||...... ... =..++-+
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~--------------------s~~-----l~~~~~~ 463 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG--------------------SIA-----LLSLMRE 463 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc--------------------chH-----HHhHHHH
Confidence 1 234668888888888888888888888888877422111 011 2344455
Q ss_pred HHHHHhhcCCCCchhHHhhcc-ccCcc
Q psy7457 213 FVITLVHLRSETQFPTLLASL-KFDVE 238 (497)
Q Consensus 213 LgI~ll~Lg~~~~~~~l~~~l-~e~~e 238 (497)
++-.-++-|+.+++..+++.| ..++.
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 555555559999999998888 55553
No 203
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=24 Score=37.04 Aligned_cols=157 Identities=11% Similarity=0.077 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHccCC--CCh----hHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCC
Q psy7457 110 RAAHVYHTARNFPQAASSLAIAFQYSAHL--IRP----EHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDST 183 (497)
Q Consensus 110 ~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~--f~~----~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e 183 (497)
++|.--+..|++++||..|.+.+.+-.+. -+. ..+-=+..||+..|+|..--+.|.+....|-+...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk------- 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK------- 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-------
Confidence 78888899999999999999999874321 111 12444677899999999988888775543321111
Q ss_pred CCccccccc-----cccc-cCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHH
Q psy7457 184 SGEESNIQI-----TNYT-VPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEH 257 (497)
Q Consensus 184 ~d~~~~~~~-----~~~~-~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~ 257 (497)
.+..+| ..+. .|++ ++..+|++-.+|.--..+.
T Consensus 81 ---~k~~KiirtLiekf~~~~ds------l~dqi~v~~~~iewA~rEk-------------------------------- 119 (421)
T COG5159 81 ---PKITKIIRTLIEKFPYSSDS------LEDQIKVLTALIEWADREK-------------------------------- 119 (421)
T ss_pred ---hhHHHHHHHHHHhcCCCCcc------HHHHHHHHHHHHHHHHHHH--------------------------------
Confidence 000000 0111 1222 2334444333333222222
Q ss_pred HHHHHHHhhhh-hhHHHHHHHHhcccHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHhhhcc
Q psy7457 258 YEAYAVQFKEL-VYLDIAEALIQEHYEAYAVQVLVLLVSS-----EKYNQPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 258 ~~~~~~~~~~~-~~ldvaeAl~e~g~y~~Al~~l~~L~~~-----~~y~~~~vwl~lAeCy~~l~~l~ 319 (497)
..|+-+ +---.+-+|.+.|.|.+|+....||... ++-+...|.+-=.+.|.++.+++
T Consensus 120 -----r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~ 182 (421)
T COG5159 120 -----RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVS 182 (421)
T ss_pred -----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhh
Confidence 112211 1245567889999999999998888753 34567888888899999999887
No 204
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.46 E-value=1.1 Score=33.56 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7457 110 RAAHVYHTARNFPQAASSLAIAFQY 134 (497)
Q Consensus 110 ~LA~~Y~e~~~~~~Ai~~le~a~~~ 134 (497)
+||+.|+++|+.+.|.++++..+..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 6899999999999999999999953
No 205
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.46 E-value=1.9 Score=26.15 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCC
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPD 98 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~ 98 (497)
+.++.++.+|.+.|++. .|...|++.++. .|.
T Consensus 2 ~~~~~~a~~~~~~~~~~--~a~~~~~~~~~~-~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYD--EALEYYEKALEL-DPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHH--HHHHHHHHHHcc-CCC
Confidence 46788999999999999 999999999988 775
No 206
>KOG1128|consensus
Probab=83.36 E-value=5.3 Score=45.94 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=48.3
Q ss_pred CCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhcc
Q psy7457 77 GLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKR 156 (497)
Q Consensus 77 G~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~ 156 (497)
+++. +|++.+++-+.. .|--.+.|+ .+.-.+.+.++...|.+.|-.++.--|++| +.-|-++-.||..|+
T Consensus 499 ~~fs--~~~~hle~sl~~-nplq~~~wf-----~~G~~ALqlek~q~av~aF~rcvtL~Pd~~--eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 499 KDFS--EADKHLERSLEI-NPLQLGTWF-----GLGCAALQLEKEQAAVKAFHRCVTLEPDNA--EAWNNLSTAYIRLKK 568 (777)
T ss_pred hhHH--HHHHHHHHHhhc-CccchhHHH-----hccHHHHHHhhhHHHHHHHHHHhhcCCCch--hhhhhhhHHHHHHhh
Confidence 5555 666666666666 665543333 445555666677777776666666666553 345666666666666
Q ss_pred HHHHHHHHHH
Q psy7457 157 YETCVEVLRR 166 (497)
Q Consensus 157 y~~al~~I~~ 166 (497)
=++|-..++.
T Consensus 569 k~ra~~~l~E 578 (777)
T KOG1128|consen 569 KKRAFRKLKE 578 (777)
T ss_pred hHHHHHHHHH
Confidence 6665555544
No 207
>KOG1585|consensus
Probab=82.99 E-value=12 Score=38.40 Aligned_cols=185 Identities=12% Similarity=0.042 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHHccCCCCh
Q psy7457 65 NRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTR---AAHVYHTARNFPQAASSLAIAFQYSAHLIRP 141 (497)
Q Consensus 65 ~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~---LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~ 141 (497)
.+.+-|.-|+--.++. +|-.+..+..+. .-.+. ++| ..+|. .|-+--+...++.+..+|++|..-|.+..+.
T Consensus 33 ~yekAAvafRnAk~fe--KakdcLlkA~~~-yEnnr-slf-hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFE--KAKDCLLKASKG-YENNR-SLF-HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHHhhccHH--HHHHHHHHHHHH-HHhcc-cHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 3444444555566666 666666666655 33332 222 12221 1222234555556666666655555444444
Q ss_pred hHHHHHHH---HHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHh
Q psy7457 142 EHCNLYLE---VLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLV 218 (497)
Q Consensus 142 ~~vNiLaE---L~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll 218 (497)
.---+.+| =.+.+.+.++||.+-++.+.++.+. + ...+ ..++--|.++.++
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-----------d-----------r~~m----a~el~gk~sr~lV 161 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-----------D-----------RDQM----AFELYGKCSRVLV 161 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-----------c-----------hHHH----HHHHHHHhhhHhh
Confidence 33333322 2334455666666666655543211 1 1234 6788899999999
Q ss_pred hcCCCCchhHHhhcc---ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhc
Q psy7457 219 HLRSETQFPTLLASL---KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVS 295 (497)
Q Consensus 219 ~Lg~~~~~~~l~~~l---~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~ 295 (497)
+++..+++-..+... ..-.+.+++ .+ + .|.-.--.|.-.+.|..|.+.|.+=..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~--~~-------------------k--~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNS--QC-------------------K--AYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhccc--HH-------------------H--HHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 999888855444322 112334444 32 1 012222233445688999999988888
Q ss_pred CCCCChHH
Q psy7457 296 SEKYNQPG 303 (497)
Q Consensus 296 ~~~y~~~~ 303 (497)
.+.|+.+.
T Consensus 219 ip~f~~se 226 (308)
T KOG1585|consen 219 IPAFLKSE 226 (308)
T ss_pred CccccChH
Confidence 88887554
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.82 E-value=60 Score=33.23 Aligned_cols=74 Identities=8% Similarity=-0.101 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCC
Q psy7457 62 ILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIR 140 (497)
Q Consensus 62 n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~ 140 (497)
-.+.+++.+.---+-|.+. .|.+-|.++.+. .|.++.. -++.-++|-.+.+.++...|+...++++..||.+-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~--~A~~~fe~l~~~-~p~s~~~--~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYE--EAIKYFEALDSR-HPFSPYS--EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHc-CCCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3567777777777889999 999999999999 9998743 567889999999999999999999999999997744
No 209
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.21 E-value=2.1 Score=28.66 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCC
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITP 97 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P 97 (497)
+.+..++.+|.++|++. +|++.|++.++. -|
T Consensus 2 ~~~~~lg~~y~~~~~~~--~A~~~~~~a~~~-~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYE--EALEYFEKALEL-NP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHH--HHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHhh-CC
Confidence 46788999999999999 999999999998 66
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=80.97 E-value=16 Score=37.08 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=66.1
Q ss_pred HHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy7457 71 RLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHT-ARNFPQAASSLAIAFQYSAHLIRPEHCNLYLE 149 (497)
Q Consensus 71 ~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e-~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaE 149 (497)
...++.+..+ .|...|++.++. +.-.. .+-...|.+-+. .++.+.|..+||.+++++|.. -.-++.|++
T Consensus 9 ~~~~r~~g~~--~aR~vF~~a~~~--~~~~~----~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~~Y~~ 78 (280)
T PF05843_consen 9 RFMRRTEGIE--AARKVFKRARKD--KRCTY----HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHCC--CCS-T----HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHhCChH--HHHHHHHHHHcC--CCCCH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHH
Confidence 3455566677 899999999976 43332 567788999555 778788999999999999965 455888999
Q ss_pred HHHhhccHHHHHHHHHHhch
Q psy7457 150 VLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 150 L~i~~k~y~~al~~I~~~~~ 169 (497)
.++..+....+=.++++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHhCcHHHHHHHHHHHHH
Confidence 99999999888777777553
No 211
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.89 E-value=3.1 Score=25.16 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 107 LSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 107 ~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
+...+|..|...++.++|+..++.++...|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4567899999999999999999999887664
No 212
>KOG1586|consensus
Probab=80.60 E-value=18 Score=37.01 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=55.0
Q ss_pred CcchhHHHHHHHHHHhccCCCCChhhHHHHH---HHHHHHHHhc-CCHHHHHHHHHHHHHHccCCC---ChhHHHHHH-H
Q psy7457 78 LKNRGFVLAGYQRYLKNITPDSDPQTILDLS---TRAAHVYHTA-RNFPQAASSLAIAFQYSAHLI---RPEHCNLYL-E 149 (497)
Q Consensus 78 ~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~---k~LA~~Y~e~-~~~~~Ai~~le~a~~~~~~~f---~~~~vNiLa-E 149 (497)
+.. .|+++.++.... +.+- |. |.-.+ .++|++|-.. .++++||..||.+=+.+...= +-+-.++=+ .
T Consensus 88 ~~~--eAv~cL~~aieI-yt~~-Gr-f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 88 DPE--EAVNCLEKAIEI-YTDM-GR-FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred ChH--HHHHHHHHHHHH-HHhh-hH-HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 555 566666655555 3221 11 11111 2677777644 788999999999998886432 223344433 3
Q ss_pred HHHhhccHHHHHHHHHHhchhee
Q psy7457 150 VLLELKRYETCVEVLRRFANIEI 172 (497)
Q Consensus 150 L~i~~k~y~~al~~I~~~~~~~l 172 (497)
+-.++++|.+||++-.+.++-.+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44456999999999888776444
No 213
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=79.42 E-value=3 Score=29.04 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=20.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHh
Q psy7457 271 LDIAEALIQEHYEAYAVQVLVLLV 294 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~~L~ 294 (497)
..+|.+|.+.|+|++|+.+|+..+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 779999999999999999999844
No 214
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.52 E-value=2.3 Score=31.88 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=25.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCC
Q psy7457 271 LDIAEALIQEHYEAYAVQVLVLLVSSEKY 299 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~~L~~~~~y 299 (497)
+|.|.+|.+.|.++.|...+..++...++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~ 31 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDE 31 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCH
Confidence 79999999999999999999999965444
No 215
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.25 E-value=31 Score=35.74 Aligned_cols=83 Identities=16% Similarity=0.023 Sum_probs=66.1
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHHHhCCcch----------hHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCC
Q psy7457 51 ILIQRGLSKDTILDNRARRLRLCDEIGLKNR----------GFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARN 120 (497)
Q Consensus 51 ~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~----------~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~ 120 (497)
-+.++.+.+|+|++...+-+.+-.++-.... -+.+.-|++.|+. .|.+. .+....-+.+.+.-+
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~-----~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSE-----RLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCH-----HHHHHHHHHHHHhCC
Confidence 3567778899999999999999888865221 1557789999999 99775 566666667777778
Q ss_pred HHHHHHHHHHHHHHccCCC
Q psy7457 121 FPQAASSLAIAFQYSAHLI 139 (497)
Q Consensus 121 ~~~Ai~~le~a~~~~~~~f 139 (497)
.++..+.+++++.++|..+
T Consensus 81 ~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHHHHCCCCh
Confidence 8999999999999998753
No 216
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.09 E-value=8.6 Score=36.65 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCC-hhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 102 QTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIR-PEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 102 ~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~-~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
+.+......+|..|.+.|+.+.|++.|.++.+++.+.-. .+-.=-++.+.+..+.|..+...|.+.-.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566778889999999999999999999999999865422 12233456777888999999999887664
No 217
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.05 E-value=8.6 Score=32.77 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhcc
Q psy7457 83 FVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKR 156 (497)
Q Consensus 83 ~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~ 156 (497)
-.++.+++-+.. .|.|. +..-.+|..|+..|+.+.|++.+-.++.+.++.-+-.--..|++++-.+|.
T Consensus 6 ~~~~al~~~~a~-~P~D~-----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 6 PDIAALEAALAA-NPDDL-----DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHH-STT-H-----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHc-CCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 356777888888 78874 788999999999999999999999999999877666667778888777664
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=78.03 E-value=19 Score=35.80 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC-hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC
Q psy7457 61 TILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD-PQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI 139 (497)
Q Consensus 61 ~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~-~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f 139 (497)
.|-..+..+|.-.-++|++. .|....+++-.. .|.-. ++ ----+|+.|+..|++.+|...++-+++++|+
T Consensus 122 ~d~a~lLglA~Aqfa~~~~A--~a~~tLe~l~e~-~pa~r~pd----~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-- 192 (251)
T COG4700 122 HDAAMLLGLAQAQFAIQEFA--AAQQTLEDLMEY-NPAFRSPD----GHLLFARTLAAQGKYADAESAFEVAISYYPG-- 192 (251)
T ss_pred CCHHHHHHHHHHHHhhccHH--HHHHHHHHHhhc-CCccCCCC----chHHHHHHHHhcCCchhHHHHHHHHHHhCCC--
Confidence 35778999999999999999 999999999988 55332 11 1125799999999999999999999999995
Q ss_pred ChhHHHHHHHHHHhhccHHH
Q psy7457 140 RPEHCNLYLEVLLELKRYET 159 (497)
Q Consensus 140 ~~~~vNiLaEL~i~~k~y~~ 159 (497)
..-.-.|+|++.++|+-.+
T Consensus 193 -~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 193 -PQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred -HHHHHHHHHHHHHhcchhH
Confidence 4788899999999985443
No 219
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=77.54 E-value=10 Score=42.22 Aligned_cols=71 Identities=11% Similarity=-0.070 Sum_probs=61.8
Q ss_pred CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 59 KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 59 ~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
+|.+-..+.-.+.++.-.|++. +|...|++.+.+ .| +. ...-.++++|...|+.++|++.|++|+.-.|..
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~--~A~~~l~rAl~L-~p-s~-----~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTD--EAYQAINKAIDL-EM-SW-----LNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHc-CC-CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 6666677777888888889999 999999999999 87 32 366788999999999999999999999999875
No 220
>KOG0551|consensus
Probab=77.42 E-value=2.5 Score=44.78 Aligned_cols=88 Identities=15% Similarity=-0.005 Sum_probs=70.6
Q ss_pred cCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHH
Q psy7457 30 INPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLST 109 (497)
Q Consensus 30 ~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k 109 (497)
.--+.|+|||+..|.-+-.+ +.=|.-.+..||.-...+|.++ +|+.--.+.++. -|... ...=
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D---------~dlnavLY~NRAAa~~~l~NyR--s~l~Dcs~al~~-~P~h~-----Ka~~ 157 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCAD---------PDLNAVLYTNRAAAQLYLGNYR--SALNDCSAALKL-KPTHL-----KAYI 157 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCC---------ccHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHhc-Ccchh-----hhhh
Confidence 44578999999999843211 2235668999999999999999 999999999999 88885 5556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7457 110 RAAHVYHTARNFPQAASSLAIAFQY 134 (497)
Q Consensus 110 ~LA~~Y~e~~~~~~Ai~~le~a~~~ 134 (497)
.=|+...++++...|.+.-+..+..
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 7799999999988888887776543
No 221
>KOG2610|consensus
Probab=76.03 E-value=54 Score=35.26 Aligned_cols=194 Identities=12% Similarity=0.023 Sum_probs=124.3
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-ccCCCChh-HH
Q psy7457 67 ARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQY-SAHLIRPE-HC 144 (497)
Q Consensus 67 ~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~-~~~~f~~~-~v 144 (497)
-..+.+.--.|... +|.....++|+. +|.|- =.+|..-..|.-+|+-..-.++.++++.. +++.=-.+ ..
T Consensus 107 h~~aai~~~~g~~h--~a~~~wdklL~d-~PtDl-----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 107 HAKAAILWGRGKHH--EAAIEWDKLLDD-YPTDL-----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred hhhHHHhhcccccc--HHHHHHHHHHHh-Cchhh-----hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 33455555668888 999999999999 99995 46777888899999999999999999887 56542222 24
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhc-CCC
Q psy7457 145 NLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHL-RSE 223 (497)
Q Consensus 145 NiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~L-g~~ 223 (497)
.||+==++..|-|.+|=+.-++.+. +++ .|-=.-=+.|+++- +..
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralq--iN~--------------------------------~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQ--INR--------------------------------FDCWASHAKAHVLEMNGR 224 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhcc--CCC--------------------------------cchHHHHHHHHHHHhcch
Confidence 5788788888999999999888875 222 22222223333332 211
Q ss_pred C-chhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhc-C-CCCC
Q psy7457 224 T-QFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVS-S-EKYN 300 (497)
Q Consensus 224 ~-~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~-~-~~y~ 300 (497)
+ ++.... ++..| .+ +-+.+.-.-+| --+|-++.+.++|+.|+.+|..=+- . +..+
T Consensus 225 ~Keg~eFM-------~~ted--~W-r~s~mlasHNy------------WH~Al~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 225 HKEGKEFM-------YKTED--DW-RQSWMLASHNY------------WHTALFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred hhhHHHHH-------Hhccc--ch-hhhhHHHhhhh------------HHHHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 1 111111 12234 44 44445555567 8889999999999999999965322 1 2222
Q ss_pred hHH--HHH------HHHHHHHHhhhccCcccc
Q psy7457 301 QPG--VWK------QLAETYEKSECLSGVVVS 324 (497)
Q Consensus 301 ~~~--vwl------~lAeCy~~l~~l~~~~~~ 324 (497)
..+ |++ .=...+++++.|.|+-+.
T Consensus 283 a~a~~~~ld~dgv~~~~d~~~kld~la~~l~d 314 (491)
T KOG2610|consen 283 AVARDVYLDLDGVDLRSDLWRKLDKLADSLTD 314 (491)
T ss_pred hhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcc
Confidence 211 112 112337889988877554
No 222
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.98 E-value=6.5 Score=33.27 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=44.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHccCCCC--------hhHHHHHHHHHHhhccHHHHHHHHHHhchhe
Q psy7457 115 YHTARNFPQAASSLAIAFQYSAHLIR--------PEHCNLYLEVLLELKRYETCVEVLRRFANIE 171 (497)
Q Consensus 115 Y~e~~~~~~Ai~~le~a~~~~~~~f~--------~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~ 171 (497)
.+..+|+..|++.+.++|+....... ..-+| ++.++...|++++|++.++..-++-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~-lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLN-LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35789999999999999998865432 33344 7889999999999999998877643
No 223
>KOG4555|consensus
Probab=75.75 E-value=5.9 Score=37.20 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCC
Q psy7457 20 LVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDS 99 (497)
Q Consensus 20 ~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d 99 (497)
++-++-...-..|++.-|=.||.+. ..+....|-|+.. .|++-|.+.+.. .|..
T Consensus 23 ~~~aE~~lede~~~~~~~e~S~~LE-----------------------l~~valaE~g~Ld--~AlE~F~qal~l-~P~r 76 (175)
T KOG4555|consen 23 LIPAESDLKDEEPDTQAIKASRELE-----------------------LKAIALAEAGDLD--GALELFGQALCL-APER 76 (175)
T ss_pred ccchhhhhcccCCchHHHHHHHHHH-----------------------HHHHHHHhccchH--HHHHHHHHHHHh-cccc
Confidence 3444444445566666666666555 3566788999999 999999999999 9998
Q ss_pred ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 100 DPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 100 ~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
. ++...=|+.|.-+|+.++|++=++++++-..+.
T Consensus 77 a-----SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 77 A-----SAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred h-----HhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 7 788999999999999999999999988865443
No 224
>KOG2053|consensus
Probab=75.51 E-value=1.1e+02 Score=36.43 Aligned_cols=100 Identities=11% Similarity=-0.022 Sum_probs=70.7
Q ss_pred CCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 58 SKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
--|+-.-++-=.|..+.++|... .|....+.+--. -|+|+ ..+.-+-.+|.++|+.++|..+||++...+|+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~--ea~~~Le~~~~~-~~~D~-----~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGD--EALKLLEALYGL-KGTDD-----LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCch--hHHHHHhhhccC-CCCch-----HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 34555556666788889999999 999777776666 66654 57788889999999999999999999999996
Q ss_pred CCCh-hHHHHHHHHHHhhccHHHHHHHHH
Q psy7457 138 LIRP-EHCNLYLEVLLELKRYETCVEVLR 165 (497)
Q Consensus 138 ~f~~-~~vNiLaEL~i~~k~y~~al~~I~ 165 (497)
.=-. .-.+-++.-....++=+-|++.=+
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 113444444444455555666554
No 225
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=75.42 E-value=1.3e+02 Score=32.76 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=90.1
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHH--HHHHHhcCCHHHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRA--AHVYHTARNFPQA 124 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~L--A~~Y~e~~~~~~A 124 (497)
+.|.-++.++..-+...-++.-=|+.-.++|+.- +|=.-.-++.+. |.|+ ++.++| |+.-...|+.+.|
T Consensus 102 qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~--~an~yL~eaae~--~~~~-----~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 102 QAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDED--RANRYLAEAAEL--AGDD-----TLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHH--HHHHHHHHHhcc--CCCc-----hHHHHHHHHHHHHhCCCchhH
Confidence 3444556666666777778888888899999999 776666666666 6665 344544 6778889999999
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 125 ASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 125 i~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
.+-.....+..|.+ .+-+++....|+..|.|+..++.+.....
T Consensus 173 ~~~v~~ll~~~pr~--~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 173 RENVDQLLEMTPRH--PEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred HHHHHHHHHhCcCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999876 68899999999999999999999988765
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=75.29 E-value=16 Score=37.97 Aligned_cols=85 Identities=8% Similarity=-0.068 Sum_probs=67.5
Q ss_pred HhhcCCCCccHHHHHHHHHHH-HHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLC-DEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIA 131 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly-~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a 131 (497)
++|.+-.|+|.+...--++.+ .+-|..-.-+|-+.+.++++. =|.| +..+=-||-.|.+++++.+|+..++..
T Consensus 180 ~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-D~~~-----iral~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 180 RNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-DPAN-----IRALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-CCcc-----HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 555666888888887777643 333554445888899999999 7776 478889999999999999999999999
Q ss_pred HHHccCCCChhH
Q psy7457 132 FQYSAHLIRPEH 143 (497)
Q Consensus 132 ~~~~~~~f~~~~ 143 (497)
++..|....|..
T Consensus 254 L~~lp~~~~rr~ 265 (287)
T COG4235 254 LDLLPADDPRRS 265 (287)
T ss_pred HhcCCCCCchHH
Confidence 999988877644
No 227
>KOG1070|consensus
Probab=75.04 E-value=47 Score=41.32 Aligned_cols=202 Identities=13% Similarity=0.029 Sum_probs=138.8
Q ss_pred cCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Q psy7457 56 GLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS 135 (497)
Q Consensus 56 ~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~ 135 (497)
.+|+|+..=.+.+.-.-.-++++.. +|.+..++.|+-|.|.+. ++-+++--.+--+-...|.-+.-.+++|+|-++|
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEie--kAR~iaerAL~tIN~REe-eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIE--KARKIAERALKTINFREE-EEKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhH--HHHHHHHHHhhhCCcchh-HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence 4678887777777778888999999 999999999999767664 4444454444455556677777788888888877
Q ss_pred cCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCC-------CCCCccccccccc---cccCCCCCCCC
Q psy7457 136 AHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQD-------STSGEESNIQITN---YTVPSDPNLVP 205 (497)
Q Consensus 136 ~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D-------~e~d~~~~~~~~~---~~~p~~l~l~l 205 (497)
-.. .-.--|+..|....++++|.+++++...- ++ ..-..|- +.++....+++.. ...|..-
T Consensus 1528 d~~---~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---- 1598 (1710)
T KOG1070|consen 1528 DAY---TVHLKLLGIYEKSEKNDEADELLRLMLKK-FG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---- 1598 (1710)
T ss_pred chH---HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----
Confidence 532 55667888888888888888888765531 11 0000110 1111111111111 2245544
Q ss_pred CcchhHHHHHHHhhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHH
Q psy7457 206 PPEILSKFVITLVHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEA 284 (497)
Q Consensus 206 PiDLr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~ 284 (497)
-+++-.|.++--++.|+-+-+..+|..+ ...| .=.| || +=-.+.=+..|.-+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtD--lW------------------------~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTD--LW------------------------SVYIDMEIKHGDIK 1651 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchh--HH------------------------HHHHHHHHccCCHH
Confidence 6799999999999999999988888777 4444 3468 88 55566677888888
Q ss_pred HHHHHHHHHhcC
Q psy7457 285 YAVQVLVLLVSS 296 (497)
Q Consensus 285 ~Al~~l~~L~~~ 296 (497)
.+..+|++++..
T Consensus 1652 ~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1652 YVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHHHhc
Confidence 899999888765
No 228
>KOG1464|consensus
Probab=74.45 E-value=28 Score=36.38 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=66.7
Q ss_pred CcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC----ChhHHHHHHHHHHh
Q psy7457 78 LKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI----RPEHCNLYLEVLLE 153 (497)
Q Consensus 78 ~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f----~~~~vNiLaEL~i~ 153 (497)
..+ .|+.+|++++.. - .+-|+|-+.++|.+-++++.++++++-.+.|...+.+..+.+ +--.+|-.++.-..
T Consensus 42 ~p~--~Al~sF~kVlel-E-gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 42 EPK--EALSSFQKVLEL-E-GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred CHH--HHHHHHHHHHhc-c-cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 667 999999999999 4 566899999999999999999999999999999888775543 22346655554332
Q ss_pred h-------ccHHHHHHHHHHhc
Q psy7457 154 L-------KRYETCVEVLRRFA 168 (497)
Q Consensus 154 ~-------k~y~~al~~I~~~~ 168 (497)
. .=|+..++.++..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAK 139 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAK 139 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhh
Confidence 2 34677777776644
No 229
>KOG0550|consensus
Probab=72.63 E-value=22 Score=38.91 Aligned_cols=107 Identities=10% Similarity=-0.043 Sum_probs=72.7
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHH--
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAI-- 130 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~-- 130 (497)
+-|+.-.|+|..++..||..|.-+|++. .|+--+++-++. =|... ..=.++.+.+-..++...|-+.|+.
T Consensus 73 t~Ai~~~pd~a~yy~nRAa~~m~~~~~~--~a~~dar~~~r~-kd~~~-----k~~~r~~~c~~a~~~~i~A~~~~~~~~ 144 (486)
T KOG0550|consen 73 TFAIDMCPDNASYYSNRAATLMMLGRFE--EALGDARQSVRL-KDGFS-----KGQLREGQCHLALSDLIEAEEKLKSKQ 144 (486)
T ss_pred HHHHHhCccchhhhchhHHHHHHHHhHh--hcccchhhheec-CCCcc-----ccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 4455569999999999999999999999 999999999988 55554 2223455555555555555444431
Q ss_pred -------------HHH-Hc--cCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 131 -------------AFQ-YS--AHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 131 -------------a~~-~~--~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
... ++ |..|+|..+- +++++-+++|..|+..-..+-+
T Consensus 145 ~~~~anal~~~~~~~~s~s~~pac~~a~~lk--a~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 145 AYKAANALPTLEKLAPSHSREPACFKAKLLK--AECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred hhHHhhhhhhhhcccccccCCchhhHHHHhh--hhhhhhcccchhHHHHHHHHHh
Confidence 111 11 4456666654 6777888888888877655443
No 230
>KOG2047|consensus
Probab=71.48 E-value=55 Score=37.81 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHccCCCChhH
Q psy7457 65 NRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFP-QAASSLAIAFQYSAHLIRPEH 143 (497)
Q Consensus 65 ~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~-~Ai~~le~a~~~~~~~f~~~~ 143 (497)
+.....++..+.|..- +-..+|-+.|.. +|-..... +=.+--.|++....+ -|+.+|.+.++-.| ++
T Consensus 104 Iwl~Ylq~l~~Q~~iT--~tR~tfdrALra-LpvtqH~r----IW~lyl~Fv~~~~lPets~rvyrRYLk~~P-----~~ 171 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLIT--RTRRTFDRALRA-LPVTQHDR----IWDLYLKFVESHGLPETSIRVYRRYLKVAP-----EA 171 (835)
T ss_pred HHHHHHHHHHhcchHH--HHHHHHHHHHHh-CchHhhcc----chHHHHHHHHhCCChHHHHHHHHHHHhcCH-----HH
Confidence 3445566677788888 888899999999 99776332 223444456666655 99999999999888 56
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 144 CNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 144 vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
.+=++|-+...+++.+|.+.+...-+
T Consensus 172 ~eeyie~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 172 REEYIEYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcC
Confidence 88899999999999999998876553
No 231
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.03 E-value=39 Score=33.29 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcc--CCCCChhhHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHccC-CCChhH---HHHHHH
Q psy7457 83 FVLAGYQRYLKNI--TPDSDPQTILDLSTRAAHVYHTARNFP-------QAASSLAIAFQYSAH-LIRPEH---CNLYLE 149 (497)
Q Consensus 83 ~Al~~y~~il~~~--~P~d~~~~~~~~~k~LA~~Y~e~~~~~-------~Ai~~le~a~~~~~~-~f~~~~---vNiLaE 149 (497)
.|++.|.-.+-.- ...+ ....-.+.-++|=+|-+.++.+ +|.+.|+.++..... ..+.++ +-+++|
T Consensus 95 ~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLige 173 (214)
T PF09986_consen 95 EAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGE 173 (214)
T ss_pred HHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Confidence 5666555443221 1211 2244567889999999999965 566666666665433 223333 667899
Q ss_pred HHHhhccHHHHHHHHHHhch
Q psy7457 150 VLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 150 L~i~~k~y~~al~~I~~~~~ 169 (497)
|...+|++++|++++.+.-+
T Consensus 174 L~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 174 LNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHhCCHHHHHHHHHHHHc
Confidence 99999999999999977553
No 232
>PRK10941 hypothetical protein; Provisional
Probab=69.95 E-value=14 Score=37.90 Aligned_cols=91 Identities=12% Similarity=0.003 Sum_probs=68.2
Q ss_pred hcccCcchhhhHHHhhc----------C--CCCccHHHHHHH--HHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHH
Q psy7457 40 SRVRTPKKIEHILIQRG----------L--SKDTILDNRARR--LRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTIL 105 (497)
Q Consensus 40 ~r~~~~~~~~~~~~~~~----------~--~~p~n~~~~~~R--A~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~ 105 (497)
|+.++...-+.|+.... + .+|..+=.|+-| -..|.+-+++. +|+.+-++++.. .|.+.
T Consensus 144 G~~L~~~~l~~~L~~~~g~~~~l~~~~L~~a~~~~il~Rml~nLK~~~~~~~~~~--~AL~~~e~ll~l-~P~dp----- 215 (269)
T PRK10941 144 GETLDEHTLEVWLKGNISPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEKQME--LALRASEALLQF-DPEDP----- 215 (269)
T ss_pred CCCCCHHHHHHHHHhhcCCcccCCHHHcCCCCHHHHHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHHh-CCCCH-----
Confidence 77777666676774221 1 111222222222 24567889999 999999999999 99886
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 106 DLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 106 ~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
.-.|.-+-+|.+++....|+.=|+.++++||+.
T Consensus 216 ~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 216 YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 567899999999999999999999999999965
No 233
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.40 E-value=37 Score=28.59 Aligned_cols=74 Identities=14% Similarity=0.059 Sum_probs=55.2
Q ss_pred HHHHhCCcchhHHHHHHHHHHhccCCCCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHH
Q psy7457 72 LCDEIGLKNRGFVLAGYQRYLKNITPDSDPQ----TILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLY 147 (497)
Q Consensus 72 Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~----~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiL 147 (497)
-.-+.|++. .|++..++..-. ....... .+.-.+-.+|.++...|+.++|++.+++++.-.++.-|-.-++..
T Consensus 7 ~~~~~~dy~--~A~d~L~~~fD~-~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~a 83 (94)
T PF12862_consen 7 NALRSGDYS--EALDALHRYFDY-AKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYA 83 (94)
T ss_pred HHHHcCCHH--HHHHHHHHHHHH-HhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 345678999 999999999887 5444321 233456679999999999999999999999988776554444433
Q ss_pred H
Q psy7457 148 L 148 (497)
Q Consensus 148 a 148 (497)
.
T Consensus 84 l 84 (94)
T PF12862_consen 84 L 84 (94)
T ss_pred H
Confidence 3
No 234
>cd01637 IMPase_like Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.
Probab=68.81 E-value=5.7 Score=38.77 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=41.4
Q ss_pred CcCCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 438 NVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 438 s~N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
..+..||.+...|..+++.+.+.|.+.....++.|||....... ..+.|..++|
T Consensus 27 ~~~~~~d~vt~aD~~~e~~i~~~L~~~~p~~~i~~EE~~~~~~~-----~~~~~~wviD 80 (238)
T cd01637 27 TKKGDGDLVTEADLAAEELIVDVLKALFPDDGILGEEGGGSGNV-----SDGGRVWVID 80 (238)
T ss_pred eecCCCCcccHHHHHHHHHHHHHHHHHCCCCeEEecCCCCcCCC-----CCCCcEEEEc
Confidence 34567889999999999999999999877789999997643211 1345777776
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.05 E-value=32 Score=34.66 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=59.8
Q ss_pred CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Q psy7457 59 KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS 135 (497)
Q Consensus 59 ~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~ 135 (497)
.+...+...+-|.++++.|++. .|.....++.+. .|.... ....+.-+-|++....|+-.+|+..+...+...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~--~A~~~l~~~~~~-~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQ--LALSALNRLFQL-NPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcH--HHHHHHHHHhcc-CCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6677889999999999999999 999999999987 533321 012466678999999999999999999999933
No 236
>cd01636 FIG FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in gluconeogenesis. Inositol-monophosphatases and inositol polyphosphatases play vital roles in eukaryotic signalling, as they participate in metabolizing the messenger molecule Inositol-1,4,5-triphosphate. Many of these enzymes are inhibited by Li+.
Probab=67.23 E-value=7.7 Score=36.44 Aligned_cols=55 Identities=27% Similarity=0.357 Sum_probs=41.5
Q ss_pred cCCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 439 VNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 439 ~N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
.+..|+.+...|..+++.+.+.|++...-..+.|||........ ...++++.++|
T Consensus 30 ~~~~~d~vt~aD~~~e~~i~~~L~~~~P~~~i~~EE~~~~~~~~---~~~~~~~WiiD 84 (184)
T cd01636 30 TKSDNDPVTTADVAAETLIRNMLKSSFPDVKIVGEESGVAEEVM---GRRDEYTWVID 84 (184)
T ss_pred ecCCCCcccHHHHHHHHHHHHHHHHHCCCCeEEecCcCCccccc---cCCCCeEEEEe
Confidence 35568899999999999999999988777899999976543210 01345777777
No 237
>KOG0376|consensus
Probab=66.93 E-value=4 Score=44.83 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=58.2
Q ss_pred cCCccceehhhcccCcc------hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhh
Q psy7457 30 INPDESRYILSRVRTPK------KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQT 103 (497)
Q Consensus 30 ~~~~~~~y~~~r~~~~~------~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~ 103 (497)
.+|-.|+|-=-|+..-= -+.|=+-.|+..||+....+.+|+..+..+|.++ +|+..|++..+. .|.+.
T Consensus 33 ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~--~A~~~l~~~~~l-~Pnd~--- 106 (476)
T KOG0376|consen 33 LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK--KALLDLEKVKKL-APNDP--- 106 (476)
T ss_pred cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH--HHHHHHHHhhhc-CcCcH---
Confidence 35666666655532211 2334456789999999999999999999999999 999999999999 99986
Q ss_pred HHHHHHHHHH
Q psy7457 104 ILDLSTRAAH 113 (497)
Q Consensus 104 ~~~~~k~LA~ 113 (497)
.+.|.+.+
T Consensus 107 --~~~r~~~E 114 (476)
T KOG0376|consen 107 --DATRKIDE 114 (476)
T ss_pred --HHHHHHHH
Confidence 45555544
No 238
>PRK10941 hypothetical protein; Provisional
Probab=65.13 E-value=16 Score=37.44 Aligned_cols=46 Identities=7% Similarity=0.004 Sum_probs=41.1
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC
Q psy7457 52 LIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD 100 (497)
Q Consensus 52 ~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~ 100 (497)
......-+|++..-+.+|+.+|.++|.++ .|+.-++.-+.+ .|.++
T Consensus 204 ~e~ll~l~P~dp~e~RDRGll~~qL~c~~--~A~~DL~~fl~~-~P~dp 249 (269)
T PRK10941 204 SEALLQFDPEDPYEIRDRGLIYAQLDCEH--VALSDLSYFVEQ-CPEDP 249 (269)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHh-CCCch
Confidence 34445568999999999999999999999 999999999999 99886
No 239
>KOG3616|consensus
Probab=64.07 E-value=79 Score=37.23 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHc----------cCCCChhHH------HHHHHHHHhhccHHHHHHHHHHhchheee
Q psy7457 110 RAAHVYHTARNFPQAASSLAIAFQYS----------AHLIRPEHC------NLYLEVLLELKRYETCVEVLRRFANIEIT 173 (497)
Q Consensus 110 ~LA~~Y~e~~~~~~Ai~~le~a~~~~----------~~~f~~~~v------NiLaEL~i~~k~y~~al~~I~~~~~~~l~ 173 (497)
.+|-..-+.|++++|-..|-.+++-+ |+.|+.+-+ ...+|+++..+.|..|-++-+.+|.-.+
T Consensus 1000 k~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l- 1078 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLL- 1078 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhh-
Confidence 45666778999999999999999855 777766554 3568999999999999999999985322
Q ss_pred eccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHh--hccccCcccccccchhhhhHH
Q psy7457 174 YFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLL--ASLKFDVEMYGTITVYLDIAE 251 (497)
Q Consensus 174 ~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~--~~l~e~~ee~~D~~Ly~~~~~ 251 (497)
.+.-+. +.|.. +.. .+. + |.--.+++-+.-+.+-..| ..++.+.--+.- =|+----
T Consensus 1079 ~dv~tg-----qar~a--iee----~d~-------~--kae~fllrankp~i~l~yf~e~~lw~dalri~k--dylp~q~ 1136 (1636)
T KOG3616|consen 1079 ADVLTG-----QARGA--IEE----GDF-------L--KAEGFLLRANKPDIALNYFIEAELWPDALRIAK--DYLPHQA 1136 (1636)
T ss_pred HHHHhh-----hhhcc--ccc----cch-------h--hhhhheeecCCCchHHHHHHHhccChHHHHHHH--hhChhHH
Confidence 100000 00000 000 000 0 0000111111111111111 000111111111 1112224
Q ss_pred HHHHHHHHHHHHHhhhh---hhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHH---HHHHHHHH
Q psy7457 252 ALIQEHYEAYAVQFKEL---VYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPG---VWKQLAET 311 (497)
Q Consensus 252 ~~~~~~~~~~~~~~~~~---~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~---vwl~lAeC 311 (497)
++|||+|+..+..=-.+ =...-|+-..+.|.|..|...|..+-....-|++- -|.+-|+-
T Consensus 1137 a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl 1202 (1636)
T KOG3616|consen 1137 AAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADL 1202 (1636)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhh
Confidence 68999999988765544 23455777899999999999996654333333221 35555554
No 240
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.11 E-value=1.6e+02 Score=30.61 Aligned_cols=152 Identities=8% Similarity=-0.017 Sum_probs=97.9
Q ss_pred CCChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHH
Q psy7457 8 YENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAG 87 (497)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~ 87 (497)
=.|.+-|.++++.=-+-...+... --=.|++. .++-+++.+|...+|.+...+..+-.++.++.... +..+-
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~-----~~~~~a~~-E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~--~l~~~ 87 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSS-----KAERRALA-ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE--KLAKK 87 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccc-----hhhHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH--HHHHH
Confidence 356778999887654333322111 00011111 24555777888889999999999999999999999 99999
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC-------------ChhHHHH---HHHHH
Q psy7457 88 YQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI-------------RPEHCNL---YLEVL 151 (497)
Q Consensus 88 y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f-------------~~~~vNi---LaEL~ 151 (497)
++++++. .|.+. .-|+..+...-. -...-.+++..++|.+++..-...- .-.-+-+ ++-.+
T Consensus 88 we~~l~~-~~~~~-~LW~~yL~~~q~-~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 88 WEELLFK-NPGSP-ELWREYLDFRQS-NFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHH-CCCCh-HHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999 99875 444444432211 1233457888999999988663321 1111222 23334
Q ss_pred HhhccHHHHHHHHHHhchh
Q psy7457 152 LELKRYETCVEVLRRFANI 170 (497)
Q Consensus 152 i~~k~y~~al~~I~~~~~~ 170 (497)
.+.|..+.|+-.++.....
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHCCchHHHHHHHHHHHHH
Confidence 5558999999998876653
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=62.66 E-value=27 Score=38.92 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 104 ILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 104 ~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
++-+=+.||-...+.|+..+||+.+.+.++.+|..-...-.-.|+|-++..++|.++-.++.++..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 455668999999999999999999999999998665556778899999999999999999999874
No 242
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=62.65 E-value=12 Score=25.64 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.1
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHhc
Q psy7457 270 YLDIAEALIQEHYEAYAVQVLVLLVS 295 (497)
Q Consensus 270 ~ldvaeAl~e~g~y~~Al~~l~~L~~ 295 (497)
+..+|.+|...|.|++|++++...+.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 47899999999999999999987664
No 243
>KOG2041|consensus
Probab=62.52 E-value=32 Score=39.96 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCcc-ccc--------cccc----cccCCCCCCCCCcchh
Q psy7457 144 CNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEE-SNI--------QITN----YTVPSDPNLVPPPEIL 210 (497)
Q Consensus 144 vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~-~~~--------~~~~----~~~p~~l~l~lPiDLr 210 (497)
-.+..||+++++.|-+.+++|+...+ + .+|+--.+. ++. +..+ +....+.
T Consensus 763 rDLAielr~klgDwfrV~qL~r~g~~------d--~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 763 RDLAIELRKKLGDWFRVYQLIRNGGS------D--DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred hhhhHHHHHhhhhHHHHHHHHHccCC------C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 47788999999999999999987553 1 111110000 000 0000 2222322
Q ss_pred HHHHHHHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHH
Q psy7457 211 SKFVITLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVL 290 (497)
Q Consensus 211 ~KLgI~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l 290 (497)
-.+.-|+.||...+..+.+...|.++ .. |. =.+|+++..+|+-++|.+.|
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe~----s~--ll------------------------p~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPED----SE--LL------------------------PVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCcc----cc--hH------------------------HHHHHHHHhhchHHHHHHHH
Confidence 45678999999999988887655222 33 66 78888999999999998888
Q ss_pred HH
Q psy7457 291 VL 292 (497)
Q Consensus 291 ~~ 292 (497)
..
T Consensus 876 Lr 877 (1189)
T KOG2041|consen 876 LR 877 (1189)
T ss_pred Hh
Confidence 43
No 244
>KOG3617|consensus
Probab=61.10 E-value=1.1e+02 Score=36.54 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=73.7
Q ss_pred hcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHH------HHhccCCCCC-hhhHHHHH--------HHHHHHHHhcC
Q psy7457 55 RGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQR------YLKNITPDSD-PQTILDLS--------TRAAHVYHTAR 119 (497)
Q Consensus 55 ~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~------il~~~~P~d~-~~~~~~~~--------k~LA~~Y~e~~ 119 (497)
++.....|--+-+.-|+.|+.-|+.+ +|+.-|.+ ..++ ...++ .+.+++++ -..|++|-+.|
T Consensus 959 ~iA~esgd~AAcYhlaR~YEn~g~v~--~Av~FfTrAqafsnAIRl-cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g 1035 (1416)
T KOG3617|consen 959 RIAEESGDKAACYHLARMYENDGDVV--KAVKFFTRAQAFSNAIRL-CKENDMKDRLANLALMSGGSDLVSAARYYEELG 1035 (1416)
T ss_pred HHHHhcccHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc
Confidence 34445567778888899999999999 99876654 3444 44444 22233322 34566777776
Q ss_pred -CHHHHHHHHHH----------HHHHccC------------CCChhHHHHHHHHHHhhccHHHHHHHHHHh
Q psy7457 120 -NFPQAASSLAI----------AFQYSAH------------LIRPEHCNLYLEVLLELKRYETCVEVLRRF 167 (497)
Q Consensus 120 -~~~~Ai~~le~----------a~~~~~~------------~f~~~~vNiLaEL~i~~k~y~~al~~I~~~ 167 (497)
...+|+.+|-+ ||...+. .-|..-+|=.++.++...+|++|+..+...
T Consensus 1036 ~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1036 GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66777766543 3443321 136677999999999999999999998663
No 245
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.79 E-value=48 Score=35.45 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=62.8
Q ss_pred hcCCCCccH--HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHH--hcCCHHHHHHHHHH
Q psy7457 55 RGLSKDTIL--DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYH--TARNFPQAASSLAI 130 (497)
Q Consensus 55 ~~~~~p~n~--~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~--e~~~~~~Ai~~le~ 130 (497)
+..+||..+ +.-|+++.-.-..++++ .|.+.|..+.+. +|.+.. .+.++.+++.|. +.-+...|.+.++.
T Consensus 121 ~~~~~p~~~~~~~~~~~a~~l~n~~~y~--aA~~~l~~l~~r-l~~~~~---~~~~~~l~~~y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 121 RELENPYEVFGDREWRRAKELFNRYDYG--AAARILEELLRR-LPGREE---YQRYKDLCEGYDAWDRFDHKEALEYLEK 194 (379)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHh-CCchhh---HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 446778766 47789999999999999 999999999998 887753 578999999998 67788999999998
Q ss_pred HHHH
Q psy7457 131 AFQY 134 (497)
Q Consensus 131 a~~~ 134 (497)
++..
T Consensus 195 ~~~~ 198 (379)
T PF09670_consen 195 LLKR 198 (379)
T ss_pred HHHH
Confidence 8875
No 246
>KOG4648|consensus
Probab=60.73 E-value=10 Score=40.57 Aligned_cols=119 Identities=10% Similarity=-0.002 Sum_probs=76.7
Q ss_pred HHHHHHhhhcc---------cccCCccceehhhcccCcch---------------------hhhHHHhhcCCCCccHHHH
Q psy7457 17 LLNLVLSQHSI---------QVINPDESRYILSRVRTPKK---------------------IEHILIQRGLSKDTILDNR 66 (497)
Q Consensus 17 ~~~~~~~~~~~---------~~~~~~~~~y~~~r~~~~~~---------------------~~~~~~~~~~~~p~n~~~~ 66 (497)
++.-+|++.|. .+.--++||=||||.|..+. .|-=|..|..-|..=+.++
T Consensus 89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY 168 (536)
T KOG4648|consen 89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY 168 (536)
T ss_pred HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 34555766665 24557899999999987654 2333555555555667888
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHH
Q psy7457 67 ARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNL 146 (497)
Q Consensus 67 ~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNi 146 (497)
-+|+.--+++|... .|-+.|+.+|.+ =|.+. +|-+.|...+.+-.+ .+..+..+.|...--|+
T Consensus 169 SRR~~AR~~Lg~~~--EAKkD~E~vL~L-EP~~~---------ELkK~~a~i~Sl~E~-----~I~~KsT~G~~~A~Q~~ 231 (536)
T KOG4648|consen 169 SRRMQARESLGNNM--EAKKDCETVLAL-EPKNI---------ELKKSLARINSLRER-----KIATKSTPGFTPARQGM 231 (536)
T ss_pred HHHHHHHHHHhhHH--HHHHhHHHHHhh-CcccH---------HHHHHHHHhcchHhh-----hHHhhcCCCCCccccch
Confidence 89999999999999 999999999999 88763 444444444332221 23334443455555555
Q ss_pred HHHHHH
Q psy7457 147 YLEVLL 152 (497)
Q Consensus 147 LaEL~i 152 (497)
.-+|=+
T Consensus 232 ~Q~l~~ 237 (536)
T KOG4648|consen 232 IQILPI 237 (536)
T ss_pred hhhccc
Confidence 544433
No 247
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.39 E-value=16 Score=32.64 Aligned_cols=39 Identities=26% Similarity=0.163 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy7457 269 VYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAET 311 (497)
Q Consensus 269 ~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeC 311 (497)
|.+==.-.+|+.|.|++|+.+..++ .|-+..-|+.+++=
T Consensus 41 v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~ 79 (115)
T TIGR02508 41 VQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW 79 (115)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH
Confidence 3455567899999999999999888 36566668777654
No 248
>KOG2796|consensus
Probab=59.86 E-value=43 Score=34.95 Aligned_cols=132 Identities=13% Similarity=-0.011 Sum_probs=90.4
Q ss_pred cceehhhcccCcchh---hhHH--HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 34 ESRYILSRVRTPKKI---EHIL--IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 34 ~~~y~~~r~~~~~~~---~~~~--~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
-+.|||-+++---|. ++-+ .-.-+.+|.+--..-.-.++-.++|+.+ .|-..|+++=+.----+.++.-+-+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k--~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK--TAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHhhhhccchhHHHH
Confidence 356888887653221 1111 1222666777777777788889999999 77777775543311112233346789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
|..|-+|.-+|+...|...+.+++..-|+. .--+|.=|=-++.+|+-.+|+|+|.+.-.
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~--~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRN--AVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCc--hhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998887777765543 34467666667779999999999988654
No 249
>KOG4340|consensus
Probab=59.40 E-value=1.9e+02 Score=30.91 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=95.2
Q ss_pred HHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHH-HH
Q psy7457 70 LRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNL-YL 148 (497)
Q Consensus 70 A~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNi-La 148 (497)
|.+|.-+.+.+-.-|++..+.-+.. .|.+. .-+--|+..|+-.-++..|.+.|+..=..+|.. +.--. .+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er-~p~~r-----AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~---~qYrlY~A 85 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELER-SPRSR-----AGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL---EQYRLYQA 85 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc-Cccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH---HHHHHHHH
Confidence 3444434333322677777777777 67664 466678888888888888888888877766643 22111 23
Q ss_pred HHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhH---HHHHH-HhhcCCCC
Q psy7457 149 EVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILS---KFVIT-LVHLRSET 224 (497)
Q Consensus 149 EL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~---KLgI~-ll~Lg~~~ 224 (497)
.-+.+-+.|.+|++|++..-.. + +|+. ||--+ .-.-|+..
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---------------~---------------------~L~~~~lqLqaAIkYse~Dl~ 129 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---------------P---------------------ALHSRVLQLQAAIKYSEGDLP 129 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---------------H---------------------HHHHHHHHHHHHHhcccccCc
Confidence 3334456777777776543210 0 0000 00000 00111222
Q ss_pred chhHHhhcc-ccCcccccccchhhhhHHHHHHHH-HHHHHHHhh---------hhhhHHHHHHHHhcccHHHHHHHHHHH
Q psy7457 225 QFPTLLASL-KFDVEMYGTITVYLDIAEALIQEH-YEAYAVQFK---------ELVYLDIAEALIQEHYEAYAVQVLVLL 293 (497)
Q Consensus 225 ~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~-~~~~~~~~~---------~~~~ldvaeAl~e~g~y~~Al~~l~~L 293 (497)
-...++..+ .|+ -+| -....+-..-+|. |+++...|+ -.|-..||-|....|.|.+|+++-+.+
T Consensus 130 g~rsLveQlp~en---~Ad--~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 130 GSRSLVEQLPSEN---EAD--GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred chHHHHHhccCCC---ccc--hhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 233333322 221 122 1111222222444 555555555 337789999999999999999999888
Q ss_pred hcC
Q psy7457 294 VSS 296 (497)
Q Consensus 294 ~~~ 296 (497)
+..
T Consensus 205 ieR 207 (459)
T KOG4340|consen 205 IER 207 (459)
T ss_pred HHh
Confidence 753
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=58.86 E-value=52 Score=36.37 Aligned_cols=102 Identities=8% Similarity=-0.065 Sum_probs=80.6
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
.+|...||.|-..+|--+.++--.|++. .|+..|++.+.+ .|... .+.=..|-+..=.|+.+.|++..++++
T Consensus 328 ~rAveld~~Da~a~~~~g~~~~~~~~~~--~a~~~f~rA~~L-~Pn~A-----~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 328 DYVSDITTVDGKILAIMGLITGLSGQAK--VSHILFEQAKIH-STDIA-----SLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhhcchh--hHHHHHHHHhhc-CCccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4567789999999999999999999999 999999999999 88775 344456666667899999999999999
Q ss_pred HHccCCCChhHHHHHHHHHHhhccHHHHHHH
Q psy7457 133 QYSAHLIRPEHCNLYLEVLLELKRYETCVEV 163 (497)
Q Consensus 133 ~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~ 163 (497)
.-.|-...-+-+...+++|... ..+.+|+.
T Consensus 400 rLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred ccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 9999776666666666666543 34445444
No 251
>KOG2300|consensus
Probab=56.57 E-value=59 Score=36.42 Aligned_cols=90 Identities=12% Similarity=0.015 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC---
Q psy7457 63 LDNRARRLRLCDEIG--LKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAH--- 137 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG--~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~--- 137 (497)
+...|.-|+-.+..| ..| +++++.+.+.+. .|++. -+-..=++.-+-.|+=.++++.|.+-+|+++....+
T Consensus 7 a~aLlGlAe~~rt~~PPkIk--k~IkClqA~~~~-~is~~-veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~ 82 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIK--KCIKCLQAIFQF-QISFL-VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPS 82 (629)
T ss_pred HHHHHHHHHHHhhcCChhHH--HHHHHHHHHhcc-CChHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccccc
Confidence 467788888899999 777 999999999999 88764 222233455577888999999999999999997643
Q ss_pred C--CChhHHHHHHHHHHhhcc
Q psy7457 138 L--IRPEHCNLYLEVLLELKR 156 (497)
Q Consensus 138 ~--f~~~~vNiLaEL~i~~k~ 156 (497)
+ ......-+|++||+...+
T Consensus 83 fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 83 FYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred HHhhhhHHHHHHHHHHHHhcC
Confidence 3 244668899999998873
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.41 E-value=22 Score=35.20 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHH-HHHHHHHhhccHHHHHHHHHHhc
Q psy7457 107 LSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCN-LYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 107 ~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vN-iLaEL~i~~k~y~~al~~I~~~~ 168 (497)
.+=++|+.+++.|++.+|+.-+..++.+-.+.-=-+-++ =|+.+.+++|++.+|++++...-
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 455899999999999999999999987654321011122 26889999999999999986543
No 253
>KOG3364|consensus
Probab=56.29 E-value=28 Score=32.73 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=54.8
Q ss_pred CcchhHHHHHHHhhcCCCCchh---HHhhcc-c-cCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q psy7457 206 PPEILSKFVITLVHLRSETQFP---TLLASL-K-FDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQE 280 (497)
Q Consensus 206 PiDLr~KLgI~ll~Lg~~~~~~---~l~~~l-~-e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~ 280 (497)
...=++.|+.|++|-.+.+... .++..+ . +++++--+ .. +=+|-++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe--~l------------------------yYLAvg~yRl 84 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRE--CL------------------------YYLAVGHYRL 84 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchh--hh------------------------hhhHHHHHHH
Confidence 6677889999999999877633 344444 3 56665555 55 5578888999
Q ss_pred ccHHHHHHHHHHHhcCCCCChHH
Q psy7457 281 HYEAYAVQVLVLLVSSEKYNQPG 303 (497)
Q Consensus 281 g~y~~Al~~l~~L~~~~~y~~~~ 303 (497)
++|+.|+++...|+..+.-|.-+
T Consensus 85 keY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 85 KEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhHHHHHHHHHHHHhhCCCcHHH
Confidence 99999999999999998766444
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=56.21 E-value=48 Score=34.33 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchh
Q psy7457 102 QTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANI 170 (497)
Q Consensus 102 ~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~ 170 (497)
++++.++..+|+.|...++.+.+++.+++-+..+| |+=...--+.+.|...|+...||...++....
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45667788899999999999999999999999998 66667788899999999999999999888763
No 255
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.07 E-value=21 Score=31.44 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=32.2
Q ss_pred hhhHHHHHHHH--HHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 247 LDIAEALIQEH--YEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 247 ~~~~~~~~~~~--~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
+.+++..|.++ | .+.++-|...|+|.+|++++..|...
T Consensus 29 ~~~~e~~L~~~~~~------------~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 29 LEEVEEVLKEHGKY------------QELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHHHHcCCH------------HHHHHHHHccCccHHHHHHHHHHhcc
Confidence 44556666666 6 99999999999999999999999994
No 256
>KOG1941|consensus
Probab=54.72 E-value=2e+02 Score=31.40 Aligned_cols=208 Identities=14% Similarity=0.055 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC-hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC--
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD-PQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI-- 139 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~-~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f-- 139 (497)
++.+.+-+.-++.+-++. +++..-+.-+.+ |.-. ++.-..+.--++..+.-++.+++|++.+|.|+..--..-
T Consensus 83 ~ea~lnlar~~e~l~~f~--kt~~y~k~~l~l--pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFH--KTISYCKTCLGL--PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHhh--hHHHHHHHHhcC--CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 566777788888888888 888776666665 5433 344445666689999999999999999999998553322
Q ss_pred --ChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHH
Q psy7457 140 --RPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITL 217 (497)
Q Consensus 140 --~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~l 217 (497)
..-..--|.+||-.++.|++++-...+...++....-. | + .-.+ ---+..+++|.+
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-------d---------~--~~ky----r~~~lyhmaVal 216 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-------D---------W--SLKY----RAMSLYHMAVAL 216 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-------c---------h--hHHH----HHHHHHHHHHHH
Confidence 22335567899999999999999988877543211100 0 0 0011 122334566666
Q ss_pred hhcCCCCchhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcC
Q psy7457 218 VHLRSETQFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSS 296 (497)
Q Consensus 218 l~Lg~~~~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~ 296 (497)
=.+|..-.+..-.+.- .- .-+.||--++ .+-..-.|+.|-+.|+-+.|-+=|+.....
T Consensus 217 R~~G~LgdA~e~C~Ea~kl-al~~Gdra~~--------------------arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKL-ALQHGDRALQ--------------------ARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccccHHHHHHHHHHH-HHHhCChHHH--------------------HHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 6666654443332110 00 1133541122 223366777777777766666665544332
Q ss_pred -----CCCChHHHHHHHHHHHHHhhh
Q psy7457 297 -----EKYNQPGVWKQLAETYEKSEC 317 (497)
Q Consensus 297 -----~~y~~~~vwl~lAeCy~~l~~ 317 (497)
+.--+..+..-.|+|.+.+..
T Consensus 276 m~~~gdrmgqv~al~g~Akc~~~~r~ 301 (518)
T KOG1941|consen 276 MASLGDRMGQVEALDGAAKCLETLRL 301 (518)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 233366678888999877543
No 257
>KOG1130|consensus
Probab=54.65 E-value=1.9e+02 Score=32.09 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Q psy7457 73 CDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS 135 (497)
Q Consensus 73 y~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~ 135 (497)
+.++|+.+ +-+.-|++.++. -.++ ++-|..+|.++|+----+.=|++|+++|
T Consensus 27 Lck~gdcr--aGv~ff~aA~qv--GTeD-------l~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCR--AGVDFFKAALQV--GTED-------LSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchh--hhHHHHHHHHHh--cchH-------HHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 45689999 889999999998 4443 4677788888888777777777887766
No 258
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=52.63 E-value=67 Score=36.30 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=62.9
Q ss_pred HHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHH
Q psy7457 150 VLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTL 229 (497)
Q Consensus 150 L~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l 229 (497)
+++.-++.++|+..+.+.|.- .+..+ ||.+|+++-- +.| .+....+
T Consensus 318 lLl~~~~l~eal~~~e~~c~~--------------------------~~~~l----pi~~~~~lle---~~d-~~~~~~l 363 (547)
T PF14929_consen 318 LLLIGGRLKEALNELEKFCIS--------------------------STCAL----PIRLRAHLLE---YFD-QNNSSVL 363 (547)
T ss_pred EEeccccHHHHHHHHHHhccC--------------------------CCccc----hHHHHHHHHH---HhC-cccHHHH
Confidence 666678899999888887741 12444 9999999832 222 2233444
Q ss_pred hhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHH-hcCCCCChHHHHHHH
Q psy7457 230 LASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLL-VSSEKYNQPGVWKQL 308 (497)
Q Consensus 230 ~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L-~~~~~y~~~~vwl~l 308 (497)
.+-+++-+...+- .- ..+..+..-.+.+-.+.++++.+ +..+-.-+..+|+.+
T Consensus 364 ~~~~e~~~~~~P~--~~------------------------~~le~l~~~~~~~~~~~~Lle~i~~~l~~~~s~~iwle~ 417 (547)
T PF14929_consen 364 SSCLEDCLKKDPT--MS------------------------YSLERLILLHQKDYSAEQLLEMIALHLDLVPSHPIWLEF 417 (547)
T ss_pred HHHHHHHhcCCCc--HH------------------------HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 3222222223333 33 44555555555566777777744 222223577899999
Q ss_pred HHHHHH
Q psy7457 309 AETYEK 314 (497)
Q Consensus 309 AeCy~~ 314 (497)
+.|+.+
T Consensus 418 ~~~~l~ 423 (547)
T PF14929_consen 418 VSCFLK 423 (547)
T ss_pred HHHHHh
Confidence 999877
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=52.04 E-value=1.6e+02 Score=30.22 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHHHHHhCCcch-----hHHHHHHHHHHhccCCCCCh----hhHHHHH--------HHHHHHHHhcCCHHH
Q psy7457 61 TILDNRARRLRLCDEIGLKNR-----GFVLAGYQRYLKNITPDSDP----QTILDLS--------TRAAHVYHTARNFPQ 123 (497)
Q Consensus 61 ~n~~~~~~RA~Ly~elG~~~~-----~~Al~~y~~il~~~~P~d~~----~~~~~~~--------k~LA~~Y~e~~~~~~ 123 (497)
-++=.+.+=-.-+..+-+..| ..|...|+.+++. +|.+.- +.-|..+ ..+|+.|.+-|....
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 344444444444444444433 4899999999999 998861 1111111 247899999999999
Q ss_pred HHHHHHHHHHHccCC-CChhHHHHHHHHHHhhccHHHHHHH
Q psy7457 124 AASSLAIAFQYSAHL-IRPEHCNLYLEVLLELKRYETCVEV 163 (497)
Q Consensus 124 Ai~~le~a~~~~~~~-f~~~~vNiLaEL~i~~k~y~~al~~ 163 (497)
|++-.+..++.+|.- ..-+.+=++.|.|..+|--.+|=+.
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 999999999998764 4557799999999999877766543
No 260
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.98 E-value=69 Score=31.75 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=72.0
Q ss_pred ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCC-ChhhHHHH
Q psy7457 29 VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDS-DPQTILDL 107 (497)
Q Consensus 29 ~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d-~~~~~~~~ 107 (497)
-..|-=+-|-.||-=+.......+...+...=++.+..+.-|..|-+. +.. ||+..|.+.|.. .+.+ ..+ .++
T Consensus 107 S~dP~llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D~~--Kt~~ll~~~L~l-~~~~~~~n--~ei 180 (203)
T PF11207_consen 107 SQDPYLLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKR-DPE--KTIQLLLRALEL-SNPDDNFN--PEI 180 (203)
T ss_pred CCCccHHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-CHH--HHHHHHHHHHHh-cCCCCCCC--HHH
Confidence 566777888888866655666666666666667789999999999855 666 899999999999 7777 433 579
Q ss_pred HHHHHHHHHhcCCHHHH
Q psy7457 108 STRAAHVYHTARNFPQA 124 (497)
Q Consensus 108 ~k~LA~~Y~e~~~~~~A 124 (497)
++-||.+|+..|+.+.|
T Consensus 181 l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 99999999999999887
No 261
>KOG3081|consensus
Probab=50.89 E-value=3.2e+02 Score=28.65 Aligned_cols=65 Identities=14% Similarity=-0.021 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 105 LDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 105 ~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
...+|.+|.+.-.-++.++-++.+.+-+......-..-..-+-+..|+..+.|++|++.+++.-+
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~ 136 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN 136 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch
Confidence 45777777776666666555555444443332222334566778888888999999988877443
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=50.87 E-value=1.9e+02 Score=31.23 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHH----Hh-----cCCHHHHHHHHH
Q psy7457 62 ILDNRARRLRLCDE---IGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVY----HT-----ARNFPQAASSLA 129 (497)
Q Consensus 62 n~~~~~~RA~Ly~e---lG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y----~e-----~~~~~~Ai~~le 129 (497)
....++..|..+-+ -|+.. +|++-...++.. -...+++ ..=-+.++| .+ .....+||+.|.
T Consensus 178 ~~~i~~~yafALnRrn~~gdre--~Al~il~~~l~~-~~~~~~d----~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~ 250 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDRE--KALQILLPVLES-DENPDPD----TLGLLGRIYKDLFLESNFTDRESLDKAIEWYR 250 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHH--HHHHHHHHHHhc-cCCCChH----HHHHHHHHHHHHHHHcCccchHHHHHHHHHHH
Confidence 35567777777777 88888 999999996555 3333333 333333333 23 334689999999
Q ss_pred HHHHHccCCCChhHHHHHHHHHHhhc
Q psy7457 130 IAFQYSAHLIRPEHCNLYLEVLLELK 155 (497)
Q Consensus 130 ~a~~~~~~~f~~~~vNiLaEL~i~~k 155 (497)
++|+-.|+. ++=+|...=|.+.-+
T Consensus 251 kgFe~~~~~--Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 251 KGFEIEPDY--YSGINAATLLMLAGH 274 (374)
T ss_pred HHHcCCccc--cchHHHHHHHHHcCC
Confidence 999977654 444555554444433
No 263
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.58 E-value=58 Score=32.11 Aligned_cols=43 Identities=16% Similarity=0.033 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q psy7457 268 LVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAE 310 (497)
Q Consensus 268 ~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAe 310 (497)
++.+-+|+.....|++++|++.|..++.+..-+.+.....+|+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 3778999999999999999999999999999887666666665
No 264
>KOG1497|consensus
Probab=48.17 E-value=3.8e+02 Score=28.82 Aligned_cols=135 Identities=9% Similarity=0.019 Sum_probs=80.8
Q ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHH--------------------HHHHH
Q psy7457 68 RRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFP--------------------QAASS 127 (497)
Q Consensus 68 ~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~--------------------~Ai~~ 127 (497)
+-..++--.|+.+ .-.+.|.+++...+|.+ |...++.+|..-...+..+..- -..++
T Consensus 7 eev~~~~~~g~hk--~~~~qyr~~l~~~lt~~-~~el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei 83 (399)
T KOG1497|consen 7 EEVVLIFAEGDHK--DQAEQYRQLLAKVLTNN-GMELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELRKEI 83 (399)
T ss_pred HHHHHHHhcCchh--hHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHHHHH
Confidence 3455677788888 88899999999855544 6677788886666666554432 11222
Q ss_pred HHHHHHHc-cCCCChhH-----HHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCC
Q psy7457 128 LAIAFQYS-AHLIRPEH-----CNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDP 201 (497)
Q Consensus 128 le~a~~~~-~~~f~~~~-----vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l 201 (497)
....+... |...+.++ .-.||.+|=+.++|++|..++.. +.+.. + ....+.
T Consensus 84 ~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~---I~~~t--g------------------~~~~d~ 140 (399)
T KOG1497|consen 84 SHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVG---IPLDT--G------------------QKAYDV 140 (399)
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc---cCccc--c------------------hhhhhh
Confidence 22222222 33456665 45788889889999999888743 21100 0 001111
Q ss_pred CCCCCcchhHHHHHHHhhcCCCCchhHHh
Q psy7457 202 NLVPPPEILSKFVITLVHLRSETQFPTLL 230 (497)
Q Consensus 202 ~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~ 230 (497)
+.-+.+++|++-..+..|+..+++...
T Consensus 141 --~~kl~l~iriarlyLe~~d~veae~~i 167 (399)
T KOG1497|consen 141 --EQKLLLCIRIARLYLEDDDKVEAEAYI 167 (399)
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 115678888876666666666666553
No 265
>KOG3364|consensus
Probab=47.97 E-value=79 Score=29.81 Aligned_cols=83 Identities=11% Similarity=-0.024 Sum_probs=63.8
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHh-ccCCCCChhhHHHHHHHHHHHHHhcCCHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEI---GLKNRGFVLAGYQRYLK-NITPDSDPQTILDLSTRAAHVYHTARNFP 122 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~el---G~~~~~~Al~~y~~il~-~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~ 122 (497)
-+|.+++|++.++++ ....+.-|--+-.- .+.+ +-+..++.+++ - -|.+. .+.+--||--+...++++
T Consensus 17 ~~e~~~rq~a~~~~s-~~s~f~lAwaLV~S~~~~dv~--~GI~iLe~l~~~~-~~~~r----Re~lyYLAvg~yRlkeY~ 88 (149)
T KOG3364|consen 17 GQEEILRQAARSDVS-KQSQFNLAWALVRSRDTEDVQ--EGIVILEDLLKSA-HPERR----RECLYYLAVGHYRLKEYS 88 (149)
T ss_pred HHHHHHHHHHhccch-HHHHHHHHHHHHcccchHHHH--HhHHHHHHHhhhc-Ccccc----hhhhhhhHHHHHHHhhHH
Confidence 567788999998877 66667666655433 3445 66777888886 4 45544 578889999999999999
Q ss_pred HHHHHHHHHHHHccC
Q psy7457 123 QAASSLAIAFQYSAH 137 (497)
Q Consensus 123 ~Ai~~le~a~~~~~~ 137 (497)
+|++.....|++-|+
T Consensus 89 ~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 89 KSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHhhCCC
Confidence 999999999999884
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.91 E-value=1.5e+02 Score=31.25 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhc
Q psy7457 106 DLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELK 155 (497)
Q Consensus 106 ~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k 155 (497)
++.-.||..||-.|+.+.|.+.+-..+.+....=+.+---.|+|++-..|
T Consensus 237 ~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 237 EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55566666666666666666666666666554444444444555544443
No 267
>KOG2471|consensus
Probab=47.41 E-value=23 Score=39.64 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHH
Q psy7457 269 VYLDIAEALIQEHYEAYAVQVLVLLVSSEKY-NQPGVWKQLAETYEK 314 (497)
Q Consensus 269 ~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y-~~~~vwl~lAeCy~~ 314 (497)
+.+..|-+|.-.|..-.|-++|..-+ ..| .+|-+|+|+|||.-+
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av--~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAV--HVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHH--HHHhcCcHHHHHHHHHHHH
Confidence 55789999999999999999995544 455 488899999999644
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=46.98 E-value=1.8e+02 Score=31.98 Aligned_cols=115 Identities=16% Similarity=0.014 Sum_probs=65.8
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAAS 126 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~ 126 (497)
..+.++......=|+..=.++-+++++.-.|+.. .|++.|++.+.. ..+-++--.=..=++|-.|.-+.+.++|.+
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~--~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLE--EAIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHH--HHHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 3444555555556777777777777777777777 777777765532 111111111234566677777777777777
Q ss_pred HHHHHHHHccCCCChhH---HHHHHHHHHhhccH-------HHHHHHHHHhch
Q psy7457 127 SLAIAFQYSAHLIRPEH---CNLYLEVLLELKRY-------ETCVEVLRRFAN 169 (497)
Q Consensus 127 ~le~a~~~~~~~f~~~~---vNiLaEL~i~~k~y-------~~al~~I~~~~~ 169 (497)
.+....+.+. |+. .=+.+-.+...++- ++|.+.+++.-.
T Consensus 327 ~f~~L~~~s~----WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESK----WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhccc----cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7776666443 544 12233334444444 556666555443
No 269
>KOG2063|consensus
Probab=46.46 E-value=2.4e+02 Score=33.83 Aligned_cols=259 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHc--cCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccC------CC
Q psy7457 108 STRAAHVYHTARNFPQAASSLAIAFQYS--AHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKL------FP 179 (497)
Q Consensus 108 ~k~LA~~Y~e~~~~~~Ai~~le~a~~~~--~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~------~~ 179 (497)
.+.|...|.+.|+-++|.+++-...+.. .+.+-..-+.-..+.+ .+.-...+.+|-.++.|++..... +.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL--~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYL--KKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHH--HHhcccchhHHHHHhhhhhccCchhheeeeec
Q ss_pred CCC-CCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCc-----------hhHHh-hcc-ccCcccccccch
Q psy7457 180 QDS-TSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQ-----------FPTLL-ASL-KFDVEMYGTITV 245 (497)
Q Consensus 180 ~D~-e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~-----------~~~l~-~~l-~e~~ee~~D~~L 245 (497)
+|. +....+...+-++-.+... ++.++...=++.-...+- .+.+. ... +..-++.++ .
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~------~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E--~ 656 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEP------KLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPE--T 656 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCc------chhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchh--h
Q ss_pred -hhhhHHHHHHHH--HHHHHHHhhhh---hhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhcc
Q psy7457 246 -YLDIAEALIQEH--YEAYAVQFKEL---VYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECLS 319 (497)
Q Consensus 246 -y~~~~~~~~~~~--~~~~~~~~~~~---~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l~ 319 (497)
|-+-..+.++.. |+.--+.=... +|.+.|--+...|.+++|+.+|...+..-.-....
T Consensus 657 ~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Y---------------- 720 (877)
T KOG2063|consen 657 TVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESY---------------- 720 (877)
T ss_pred hHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHH----------------
Q ss_pred CcccccccCCCchHHHHHHHhhhhhcccccccHHHHhhccccccccccccC--CcchhHHHHHHHHHhcCCCccchhhhh
Q psy7457 320 GVVVSTVDTGSGSWWFQSMSSAMCSTVLIKDSTEHLDQLSLDATTVLYKTG--HIPHAYQLFRVLMLKNLDSKVVLNLMN 397 (497)
Q Consensus 320 ~~~~~~~d~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~ay~~~r~~~~~~~~~~~~wnlfn 397 (497)
|-+.|..+..+.=.|+.+ ..+|+++ ++..+--++=.++.+..+.-..=-.||
T Consensus 721 -----------------------c~~~y~~~~~~~~~y~~l---L~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~ 774 (877)
T KOG2063|consen 721 -----------------------CLPQYESDKTNKEIYLTL---LRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLK 774 (877)
T ss_pred -----------------------HHHhccCCCcccHHHHHH---HHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHH
Q ss_pred ccccCCCccchhHHHHHhhhc
Q psy7457 398 LITLRSSDIRIVRNTLRTFQS 418 (497)
Q Consensus 398 ~~~~~t~~iTL~rfLl~~~~~ 418 (497)
..+-.+..--+.+|+....++
T Consensus 775 ~Lp~~~sl~~~~~~l~~~Lr~ 795 (877)
T KOG2063|consen 775 LLPDDISLKDLCSFLSKLLRK 795 (877)
T ss_pred hCCccCcHhHHHHHHHHHHHH
No 270
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.43 E-value=64 Score=27.47 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCC-CChhHHHHHHHHHHhhccHHHHHHHHHH
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHL-IRPEHCNLYLEVLLELKRYETCVEVLRR 166 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~-f~~~~vNiLaEL~i~~k~y~~al~~I~~ 166 (497)
...-+.| ..++..+|+..+..++++.++. -.|.-+--|+-.|..-|+|++.|+.-.+
T Consensus 11 e~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 11 EKGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566 7889999999999999987543 3678889999999999999999987543
No 271
>KOG1941|consensus
Probab=44.87 E-value=74 Score=34.61 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=71.4
Q ss_pred hhcccCcchhhhHHHhhc-C--CCC-ccHHHHHHHHHHH------HHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHH
Q psy7457 39 LSRVRTPKKIEHILIQRG-L--SKD-TILDNRARRLRLC------DEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLS 108 (497)
Q Consensus 39 ~~r~~~~~~~~~~~~~~~-~--~~p-~n~~~~~~RA~Ly------~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~ 108 (497)
|+|+.+..|.--....|. + |=. +||...++|+.|| +.+|..+ -|++.-+-.-|+-+-+-+......-+
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg--dA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG--DAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 566666555443333332 1 112 5699999998886 5789999 99999887777644444444555667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCC
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLI 139 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f 139 (497)
+-+|.+|.+.|+.+.|-.-||.|+..-.+..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 8899999999999999999999998776554
No 272
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.81 E-value=36 Score=21.65 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy7457 281 HYEAYAVQVLVLLVSSEKYNQPGVWKQLAET 311 (497)
Q Consensus 281 g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeC 311 (497)
|..+.|..+|+..+.... +.+.+|..+++-
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHHH
Confidence 467788899998887655 788889998864
No 273
>cd01515 Arch_FBPase_1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (FBPase class IV). These are Mg++ dependent phosphatases. Members in this family may have both fructose-1,6-bisphosphatase and inositol-monophosphatase activity. In hyperthermophilic archaea, inositol monophosphatase is thought to play a role in the biosynthesis of di-myo-inositol-1,1'-phosphate, an osmolyte unique to hyperthermophiles.
Probab=44.56 E-value=30 Score=34.55 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=39.1
Q ss_pred cCCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 439 VNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 439 ~N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
.+..||.+...|..+++.+.+.|+... -.++.|||....... +.+.++.++|
T Consensus 31 ~k~~~d~vt~aD~~ae~~i~~~l~~~~-~~~i~~EE~~~~~~~-----~~~~~~WvID 82 (257)
T cd01515 31 IGADGTPTKLIDKVAEDAAIEILKKLG-SVNIVSEEIGVIDNG-----DEPEYTVVLD 82 (257)
T ss_pred ecCCCCcchHHHHHHHHHHHHHHHhCC-CceEEecCCCccccC-----CCCCeEEEEe
Confidence 345688999999999999999999887 678999996542111 1356777776
No 274
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.32 E-value=47 Score=25.78 Aligned_cols=33 Identities=15% Similarity=-0.072 Sum_probs=27.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCCChHH
Q psy7457 271 LDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPG 303 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~ 303 (497)
+-+|-++...|+|..|+++...++..+.-|.-+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 568899999999999999999999999888555
No 275
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.07 E-value=2e+02 Score=29.05 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCcccccccccc
Q psy7457 116 HTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNY 195 (497)
Q Consensus 116 ~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~ 195 (497)
+.+++.++|++++-. =+-.+++.|++.-|.++..-...+. -
T Consensus 1 v~~kky~eAidLL~~----------------Ga~~ll~~~Q~~sg~DL~~lliev~-----------------------~ 41 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYS----------------GALILLKHGQYGSGADLALLLIEVY-----------------------E 41 (260)
T ss_dssp HHTT-HHHHHHHHHH----------------HHHHHHHTT-HHHHHHHHHHHHHHH-----------------------H
T ss_pred CccccHHHHHHHHHH----------------HHHHHHHCCCcchHHHHHHHHHHHH-----------------------H
Q ss_pred ccCCCCCCCCCcchhHHHHHHHhhcCCCCc-----hhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q psy7457 196 TVPSDPNLVPPPEILSKFVITLVHLRSETQ-----FPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVY 270 (497)
Q Consensus 196 ~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~-----~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ 270 (497)
...... ..+-+-|++-+.-.++..++ ....+..........||-+|+
T Consensus 42 ~~~~~~----~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH------------------------ 93 (260)
T PF04190_consen 42 KSEDPV----DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELH------------------------ 93 (260)
T ss_dssp HTT-------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHH------------------------
T ss_pred HcCCCC----CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHH------------------------
Q ss_pred HHHHHHHHhcccHHHHHHHHH
Q psy7457 271 LDIAEALIQEHYEAYAVQVLV 291 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~ 291 (497)
.-+|+.|.+.|+|.+|.+.|.
T Consensus 94 ~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 94 HLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHH
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=43.75 E-value=79 Score=35.44 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy7457 65 NRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAI 130 (497)
Q Consensus 65 ~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~ 130 (497)
.+.+-|....++|+.+ .|++.|+-+++. .|..+. +.+--.|...+.+.+++.++-.++.+
T Consensus 261 ~KrRLAmCarklGr~~--EAIk~~rdLlke-~p~~~~---l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLR--EAIKMFRDLLKE-FPNLDN---LNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hHHHHHHHHHHhCChH--HHHHHHHHHHhh-CCccch---hhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3444578889999999 999999999999 897552 35777899999999999999888776
No 277
>PRK12676 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Reviewed
Probab=43.18 E-value=29 Score=34.76 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=39.3
Q ss_pred CCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCceeecCCCCCCCCCeEEEec
Q psy7457 440 NVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496 (497)
Q Consensus 440 N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~~i~v~~~~~~~G~Y~V~fD 496 (497)
+..||.+...|..+++.+.+.|+....-.++.|||..... .. .+.|+.++|
T Consensus 37 ~~~~d~vt~aD~~ae~~i~~~L~~~~P~~~il~EE~~~~~--~~----~~~~~WvID 87 (263)
T PRK12676 37 GADGTPTKLIDKVAEDIILEVLKPLGRCVNIISEELGEIV--GN----GPEYTVVLD 87 (263)
T ss_pred cCCCCEeeHHHHHHHHHHHHHHHHhCCCCEEEecccCCcC--CC----CCCeEEEEe
Confidence 4467889999999999999999998777899999965432 11 345666666
No 278
>KOG1920|consensus
Probab=42.77 E-value=60 Score=39.64 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHc------cC-CCChhHHH----HHHHHHHhhccHHHHHHHHHHhch
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYS------AH-LIRPEHCN----LYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~------~~-~f~~~~vN----iLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
.+.|-+|-..|+.++|+.+|..+-+-- .. .++-.++- -|++.+..++++.+|.++++.+|.
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 478899999999999999998875532 11 23444554 456666777999999999999885
No 279
>KOG1920|consensus
Probab=41.73 E-value=49 Score=40.36 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=57.4
Q ss_pred HHHHHHHhCCcchhHHHHHHHH---------HHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC
Q psy7457 69 RLRLCDEIGLKNRGFVLAGYQR---------YLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI 139 (497)
Q Consensus 69 RA~Ly~elG~~~~~~Al~~y~~---------il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f 139 (497)
=|.+|+..|... +|+++|+. +.++ +- .+.+.+..++.+|+....++++.-+|.++++.+.....+.
T Consensus 958 Aal~Ye~~Gkle--kAl~a~~~~~dWr~~l~~a~q-l~-~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a- 1032 (1265)
T KOG1920|consen 958 AALMYERCGKLE--KALKAYKECGDWREALSLAAQ-LS-EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA- 1032 (1265)
T ss_pred HHHHHHHhccHH--HHHHHHHHhccHHHHHHHHHh-hc-CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-
Confidence 366788899999 99999975 3343 22 2235667777999999999999999999988876654332
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHH
Q psy7457 140 RPEHCNLYLEVLLELKRYETCVEVL 164 (497)
Q Consensus 140 ~~~~vNiLaEL~i~~k~y~~al~~I 164 (497)
.-+|++-++|.+|+++-
T Consensus 1033 --------v~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1033 --------VALLCKAKEWEEALRVA 1049 (1265)
T ss_pred --------HHHHhhHhHHHHHHHHH
Confidence 22444444555555543
No 280
>KOG1585|consensus
Probab=41.67 E-value=2.5e+02 Score=29.25 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC----C
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL----I 139 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~----f 139 (497)
..+..-+.|.+++..+. .+..-|++.-..-.-+-++++--..+...|+ -.+..++++|+++|.++..-.... -
T Consensus 72 KayEqaamLake~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred HHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence 45667777888888888 8888777766552222223333344444444 467788888999988887754321 2
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHHhchhe
Q psy7457 140 RPEHCNLYLEVLLELKRYETCVEVLRRFANIE 171 (497)
Q Consensus 140 ~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~ 171 (497)
-.+-+--+.-+|+..++|.+|...+.+--+|.
T Consensus 149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 22334555666777778888777776655443
No 281
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=40.88 E-value=30 Score=22.40 Aligned_cols=22 Identities=14% Similarity=0.006 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q psy7457 108 STRAAHVYHTARNFPQAASSLA 129 (497)
Q Consensus 108 ~k~LA~~Y~e~~~~~~Ai~~le 129 (497)
.-.+|..|...|+.++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4468999999999999988875
No 282
>KOG4814|consensus
Probab=40.55 E-value=68 Score=37.06 Aligned_cols=97 Identities=9% Similarity=0.050 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC-hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD-PQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP 141 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~-~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~ 141 (497)
...+|+.|.=.-+...+- -+++-|..-++. +|+|. ...|..+-|.|+-.|..+.++++|.+++++|=++-|..
T Consensus 354 H~iLWn~A~~~F~~~~Y~--~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~--- 427 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYV--VSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS--- 427 (872)
T ss_pred HHHHHHhhHHHHHHHHHH--HHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc---
Confidence 467899999999999999 999999999999 99987 34567888999999999999999999999997766542
Q ss_pred hHHHHHHHHHHhh-----ccHHHHHHHHHHhch
Q psy7457 142 EHCNLYLEVLLEL-----KRYETCVEVLRRFAN 169 (497)
Q Consensus 142 ~~vNiLaEL~i~~-----k~y~~al~~I~~~~~ 169 (497)
.+.-+++.. +.=++|+.+|...-.
T Consensus 428 ----~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 428 ----PLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred ----HHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 233333322 556778888776554
No 283
>KOG4234|consensus
Probab=39.39 E-value=80 Score=31.84 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 66 RARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 66 ~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
+-.||.-.-+++... .|++.--+.+.+ .|... ..+.+=|..|-.+..++.|++=|..+++.-|+.
T Consensus 137 y~Nraaa~iKl~k~e--~aI~dcsKaiel-~pty~-----kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWE--SAIEDCSKAIEL-NPTYE-----KALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhhHHHHHHhhhHH--HHHHHHHhhHhc-CchhH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 345555566666666 666666666666 66553 455555666766666677777776666666643
No 284
>KOG3616|consensus
Probab=37.64 E-value=1.1e+02 Score=36.07 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=97.1
Q ss_pred HHHHHhCCcchhHHHHHHHH------HHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCCh-hH
Q psy7457 71 RLCDEIGLKNRGFVLAGYQR------YLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRP-EH 143 (497)
Q Consensus 71 ~Ly~elG~~~~~~Al~~y~~------il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~-~~ 143 (497)
+||--+|... +|+.-|.+ ++++ ....-|+...+.-+++|+-|-+.|++..|-+-|-++ .+| +.
T Consensus 845 qlyiti~~p~--~aiqmydk~~~~ddmirl-v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea-------~d~kaa 914 (1636)
T KOG3616|consen 845 QLYITIGEPD--KAIQMYDKHGLDDDMIRL-VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA-------GDFKAA 914 (1636)
T ss_pred heeEEccCch--HHHHHHHhhCcchHHHHH-HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh-------hhHHHH
Confidence 4566666666 77877765 3444 222335677788899999999999999888766654 334 44
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCC
Q psy7457 144 CNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSE 223 (497)
Q Consensus 144 vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~ 223 (497)
||| |-..+-|++|-++-+.--+ .. ....-.-.+...+..+. .+-|.-|+|...-...-.
T Consensus 915 vnm----yk~s~lw~dayriaktegg-----~n--------~~k~v~flwaksiggda----avkllnk~gll~~~id~a 973 (1636)
T KOG3616|consen 915 VNM----YKASELWEDAYRIAKTEGG-----AN--------AEKHVAFLWAKSIGGDA----AVKLLNKHGLLEAAIDFA 973 (1636)
T ss_pred HHH----hhhhhhHHHHHHHHhcccc-----cc--------HHHHHHHHHHHhhCcHH----HHHHHHhhhhHHHHhhhh
Confidence 665 4556778888777543221 00 00000000112233443 444444444321111100
Q ss_pred C---chhHHhhcc-ccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCC
Q psy7457 224 T---QFPTLLASL-KFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKY 299 (497)
Q Consensus 224 ~---~~~~l~~~l-~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y 299 (497)
. -|+..|+-- ----...|. ||+-.|--+.+.|.+++|-+.|...++...|
T Consensus 974 ~d~~afd~afdlari~~k~k~~~--------------------------vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 974 ADNCAFDFAFDLARIAAKDKMGE--------------------------VHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred hcccchhhHHHHHHHhhhccCcc--------------------------chhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 0 011111100 000012333 4488888999999999999999999999888
Q ss_pred Ch
Q psy7457 300 NQ 301 (497)
Q Consensus 300 ~~ 301 (497)
|.
T Consensus 1028 ni 1029 (1636)
T KOG3616|consen 1028 NI 1029 (1636)
T ss_pred cc
Confidence 84
No 285
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=37.46 E-value=43 Score=21.27 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 144 CNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 144 vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
.|++...|...|++++|.+++++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4788899999999999999887654
No 286
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=35.83 E-value=6.9e+02 Score=28.24 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=92.1
Q ss_pred CCCccHHHHHHHHHHHH-HhCCcchhHHHHHHHHHHhccCCCCCh-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Q psy7457 58 SKDTILDNRARRLRLCD-EIGLKNRGFVLAGYQRYLKNITPDSDP-QTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS 135 (497)
Q Consensus 58 ~~p~n~~~~~~RA~Ly~-elG~~~~~~Al~~y~~il~~~~P~d~~-~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~ 135 (497)
++-.....+++-|.+|- |..... .|-....|.... ...+.. +.-+..-=-+|++|.+.|... |...+.++++.+
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~--~Ae~~L~k~~~l-~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLD--LAETYLEKAILL-CERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 34445778888888776 777777 888777777666 443322 112334446799999999888 999999999987
Q ss_pred cC--CCChhH-HHHH-HHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhH
Q psy7457 136 AH--LIRPEH-CNLY-LEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILS 211 (497)
Q Consensus 136 ~~--~f~~~~-vNiL-aEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~ 211 (497)
.. .-.|.. +..+ +.+.+..+.+..|++.++..+..-- .+++. -+-+.+
T Consensus 130 ~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~------------------------~~~d~----~~~v~~ 181 (608)
T PF10345_consen 130 ETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN------------------------QRGDP----AVFVLA 181 (608)
T ss_pred hccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh------------------------hcCCH----HHHHHH
Confidence 65 334533 5555 6666666899999999988775211 12333 556777
Q ss_pred HHHHHHhhcCCCCc
Q psy7457 212 KFVITLVHLRSETQ 225 (497)
Q Consensus 212 KLgI~ll~Lg~~~~ 225 (497)
-+..+++++.....
T Consensus 182 ~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 182 SLSEALLHLRRGSP 195 (608)
T ss_pred HHHHHHHHhcCCCc
Confidence 77778888877644
No 287
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=34.72 E-value=77 Score=35.28 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=51.3
Q ss_pred HHHHHHHHHhh--------hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhh
Q psy7457 256 EHYEAYAVQFK--------ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSE 316 (497)
Q Consensus 256 ~~~~~~~~~~~--------~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~ 316 (497)
.+|+...+|=. =+.|.-+|-|+++...|.+|..++..|-.+++-.+..|-..++=|++++-
T Consensus 476 gey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred ccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhhh
Confidence 34666655543 34889999999999999999999999999998889999999999998753
No 288
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=34.70 E-value=3.2e+02 Score=24.00 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=24.5
Q ss_pred HHHHHHHHhc-ccHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy7457 271 LDIAEALIQE-HYEAYAVQVLVLLVSSEKYNQPGVWKQLAETY 312 (497)
Q Consensus 271 ldvaeAl~e~-g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy 312 (497)
-++-+.+.+. +.++.|+++... -+.+.+|.+++..+
T Consensus 99 ~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~ 135 (140)
T smart00299 99 KDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHH
Confidence 5555556655 778888887754 23677898888654
No 289
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=34.02 E-value=54 Score=33.83 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=48.9
Q ss_pred hhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCC
Q psy7457 38 ILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSD 100 (497)
Q Consensus 38 ~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~ 100 (497)
.|+|.........+..+...-+|.|-.-+-+|+.+|.++|.++ -|++.+...+.+ +|.+.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~--vAl~dl~~~~~~-~P~~~ 249 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH--VALEDLSYFVEH-CPDDP 249 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch--hhHHHHHHHHHh-CCCch
Confidence 3444444445555556666778999999999999999999999 999999999999 99886
No 290
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=33.98 E-value=76 Score=34.86 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhc
Q psy7457 267 ELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSECL 318 (497)
Q Consensus 267 ~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~l 318 (497)
-..++|+|-+++-.++|++|.+++..|.+....+.+-..+..|-||.+++..
T Consensus 305 ~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 305 HLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 4478999999999999999999999999988888777888889999988844
No 291
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=33.84 E-value=1.4e+02 Score=33.48 Aligned_cols=64 Identities=14% Similarity=-0.031 Sum_probs=53.9
Q ss_pred hhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHH
Q psy7457 47 KIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAH 113 (497)
Q Consensus 47 ~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~ 113 (497)
..+.-|+-+++++|+|+-.++.-.+-|...|... +-.+.|+++++- +|.-+..|-.-+.-+||.
T Consensus 26 ~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~--~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~ 89 (660)
T COG5107 26 GDELRLRERIKDNPTNILSYFQLIQYLETQESMD--AEREMYEQLSSP-FPIMEHAWRLYMSGELAR 89 (660)
T ss_pred chHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHH--HHHHHHHHhcCC-CccccHHHHHHhcchhhh
Confidence 3444568899999999999999999999999999 889999999999 998887666666666665
No 292
>KOG1463|consensus
Probab=33.78 E-value=2.3e+02 Score=30.67 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred CccCCCCCChHHHHHHHHHHHhhhcccccCCccceehhhcccCcchhhhHHHhhcCCCCccHH----HHHHHHHHHHHhC
Q psy7457 2 MKTGQSYENPQEYYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILD----NRARRLRLCDEIG 77 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~----~~~~RA~Ly~elG 77 (497)
+.+.|.-++|.++.+|+|. +|-+.||++.++ .+.+-..+|.+.|
T Consensus 15 ~~~~~~~~~~~il~~vl~~--------------------------------~~~~~s~e~~i~~kE~~Ilel~~ll~~~~ 62 (411)
T KOG1463|consen 15 VSVNQVEEAINILKSVLNK--------------------------------AQGASSDEARIKEKEQSILELGDLLAKEG 62 (411)
T ss_pred cccchhhhhHHHHHHHhhh--------------------------------hccccCCHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHc----cCCCChhHHHHHHHHHH
Q psy7457 78 LKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNF-PQAASSLAIAFQYS----AHLIRPEHCNLYLEVLL 152 (497)
Q Consensus 78 ~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~-~~Ai~~le~a~~~~----~~~f~~~~vNiLaEL~i 152 (497)
+.. .=.+.-+.+... +-.-.......++|.|-..+-...+- +.=|.+..++++.- ..+-.-+-=-=|+-||.
T Consensus 63 ~~~--~lr~li~~~Rpf-~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~ 139 (411)
T KOG1463|consen 63 DAE--ELRDLITSLRPF-LSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYN 139 (411)
T ss_pred chh--HHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred hhccHHHHHHHHHHhch
Q psy7457 153 ELKRYETCVEVLRRFAN 169 (497)
Q Consensus 153 ~~k~y~~al~~I~~~~~ 169 (497)
.+++|.+|+..|....+
T Consensus 140 d~~~YteAlaL~~~L~r 156 (411)
T KOG1463|consen 140 DTKRYTEALALINDLLR 156 (411)
T ss_pred hhHHHHHHHHHHHHHHH
No 293
>KOG1128|consensus
Probab=33.62 E-value=6.6e+02 Score=29.68 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy7457 271 LDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEK 314 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~ 314 (497)
+-.|-|..+.+.++.|.+.|..=+..+.++-.+ |-.++-.|-+
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea-WnNls~ayi~ 565 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA-WNNLSTAYIR 565 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh-hhhhhHHHHH
Confidence 566777777777777777777777777766555 6666666544
No 294
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.28 E-value=1.4e+02 Score=29.76 Aligned_cols=83 Identities=19% Similarity=0.103 Sum_probs=62.8
Q ss_pred hCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCC----ChhHHHHHHHHH
Q psy7457 76 IGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLI----RPEHCNLYLEVL 151 (497)
Q Consensus 76 lG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f----~~~~vNiLaEL~ 151 (497)
+.... +|++.|++.-+. -....+.-++|+.|+..|+.++|++.|+.+...+.... ..+-+-.|.+-.
T Consensus 158 I~lL~--~A~~~f~~~~~~-------R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 158 IELLE--KAYEQFKKYGQN-------RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred HHHHH--HHHHHHHHhccc-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 33455 788888765443 12236889999999999999999999999999887543 345577788888
Q ss_pred HhhccHHHHHHHHHHh
Q psy7457 152 LELKRYETCVEVLRRF 167 (497)
Q Consensus 152 i~~k~y~~al~~I~~~ 167 (497)
...|+-++.+.+.-..
T Consensus 229 ~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 8888888888776543
No 295
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.91 E-value=98 Score=28.77 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhh
Q psy7457 271 LDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQLAETYEKSEC 317 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~lAeCy~~l~~ 317 (497)
++.|++.++.|+|.-|..+...|+..+.-|. ......|++|++++-
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~-~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNE-EARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHH
Confidence 8999999999999999999999999887665 458889999999873
No 296
>KOG1586|consensus
Probab=32.90 E-value=3e+02 Score=28.41 Aligned_cols=97 Identities=11% Similarity=0.213 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHH-------Hhc-CCHHHHHHHHHHHHHHc
Q psy7457 64 DNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVY-------HTA-RNFPQAASSLAIAFQYS 135 (497)
Q Consensus 64 ~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y-------~e~-~~~~~Ai~~le~a~~~~ 135 (497)
....+-|.+--++|++. +|++.|+++.+. --.+ .++|--|+-| |=. .|.-.|-.++++.-+-.
T Consensus 155 KC~lKvA~yaa~leqY~--~Ai~iyeqva~~-s~~n------~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYS--KAIDIYEQVARS-SLDN------NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-hccc------hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 45667778888999999 999999999998 4444 3666655543 333 77778888888888888
Q ss_pred cCCCChhHHHHHHHHHHhh-----ccHHHHHHHHHHhch
Q psy7457 136 AHLIRPEHCNLYLEVLLEL-----KRYETCVEVLRRFAN 169 (497)
Q Consensus 136 ~~~f~~~~vNiLaEL~i~~-----k~y~~al~~I~~~~~ 169 (497)
|.+-+--+.+.|.+|.-.. ..|.++.+-+-+.+|
T Consensus 226 P~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisr 264 (288)
T KOG1586|consen 226 PAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISR 264 (288)
T ss_pred CcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccch
Confidence 9888889999999998665 356666666555554
No 297
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.99 E-value=1.7e+02 Score=31.76 Aligned_cols=71 Identities=13% Similarity=0.018 Sum_probs=58.7
Q ss_pred CCCCccHHHHHH--HHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHH--hcCCHHHHHHHHHH
Q psy7457 57 LSKDTILDNRAR--RLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYH--TARNFPQAASSLAI 130 (497)
Q Consensus 57 ~~~p~n~~~~~~--RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~--e~~~~~~Ai~~le~ 130 (497)
.+||.++....+ ++...-..++++ .|.+-|..+++. .+........+..+.|++.|. +.=+.+.|.+.++.
T Consensus 122 ~~nP~~v~~~~e~~~~r~l~n~~dy~--aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 122 PSDPYNVEGNTEQGYARRAINAFDYL--FAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 578887776666 565788899999 999999999999 665666778899999999998 66777899998883
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=31.38 E-value=2e+02 Score=29.92 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYS 135 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~ 135 (497)
+..+.+-++.+-.-|.+. .+.+..+++... -|.+. .+...+=+.|...|+...||+.|...-+..
T Consensus 153 ~~~l~~lae~~~~~~~~~--~~~~~l~~Li~~-dp~~E-----~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 153 IKALTKLAEALIACGRAD--AVIEHLERLIEL-DPYDE-----PAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHhcccHH--HHHHHHHHHHhc-Cccch-----HHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 444555666777778888 899999999999 99997 688899999999999999999999988754
No 299
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=30.93 E-value=3.4e+02 Score=28.57 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=60.7
Q ss_pred HHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy7457 72 LCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVL 151 (497)
Q Consensus 72 Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~ 151 (497)
-+.|+|+.+ .++-=-.+..+. |.+-+..+ +..=-=.|.+.++...+.+ .-..|-++|+.=+..+.-.++|||
T Consensus 92 ALAEmnrWr--eVLsWvlqyYq~--pEklPpkI---leLCILLysKv~Ep~amle-v~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 92 ALAEMNRWR--EVLSWVLQYYQV--PEKLPPKI---LELCILLYSKVQEPAAMLE-VASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred HHHHHhhHH--HHHHHHHHHhcC--cccCCHHH---HHHHHHHHHHhcCHHHHHH-HHHHHHhCcccCCchhhHHHHHHH
Confidence 467899999 766555555554 55555534 4444455777777655444 457888999988888899999999
Q ss_pred Hhh-----ccHHHHHHHHH
Q psy7457 152 LEL-----KRYETCVEVLR 165 (497)
Q Consensus 152 i~~-----k~y~~al~~I~ 165 (497)
+.. |++++|-+.|.
T Consensus 164 Ll~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHhccccHHHHHHHHh
Confidence 987 88888877773
No 300
>KOG2796|consensus
Probab=30.04 E-value=6.9e+02 Score=26.44 Aligned_cols=182 Identities=14% Similarity=0.076 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChh
Q psy7457 63 LDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPE 142 (497)
Q Consensus 63 ~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~ 142 (497)
...||=-|.+...+|... ++.-++..+ . +.++..-...-..+..+..++++++=.. .
T Consensus 122 FsmR~lhAe~~~~lgnpq-----esLdRl~~L-~---------~~V~~ii~~~e~~~~~ESsv~lW~KRl~--------~ 178 (366)
T KOG2796|consen 122 FSMRILHAELQQYLGNPQ-----ESLDRLHKL-K---------TVVSKILANLEQGLAEESSIRLWRKRLG--------R 178 (366)
T ss_pred HHHHHHHHHHHHhcCCcH-----HHHHHHHHH-H---------HHHHHHHHHHHhccchhhHHHHHHHHHH--------H
Confidence 678888999999999888 444555555 1 2334444445555666888888887543 3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCC
Q psy7457 143 HCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRS 222 (497)
Q Consensus 143 ~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~ 222 (497)
..|.++..+...|.|.-.+..++..-. + + -|. .+-|-.|||-.-...|+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~----~-~--------------------~e~------~p~L~s~Lgr~~MQ~GD 227 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK----Y-Y--------------------PEQ------EPQLLSGLGRISMQIGD 227 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH----h-C--------------------Ccc------cHHHHHHHHHHHHhccc
Confidence 468888999999999999988877553 1 1 022 34578899998888899
Q ss_pred CCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccHHHHHHHHHHHhcCCCCChH
Q psy7457 223 ETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEKYNQP 302 (497)
Q Consensus 223 ~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~ 302 (497)
.+-++.-|+ ++|.... +. --.||.-.|+.-.|-.|....+|.+|-++|......+.-+..
T Consensus 228 ~k~a~~yf~----~vek~~~--kL--------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 228 IKTAEKYFQ----DVEKVTQ--KL--------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred HHHHHHHHH----HHHHHHh--hh--------------hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 888887774 3433333 22 123555667788899999999999999999888777765544
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy7457 303 GVWKQLAETYEKSECLS 319 (497)
Q Consensus 303 ~vwl~lAeCy~~l~~l~ 319 (497)
++ -.-|=|.-=++.+.
T Consensus 288 a~-NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 288 AN-NNKALCLLYLGKLK 303 (366)
T ss_pred hh-chHHHHHHHHHHHH
Confidence 42 23355644444444
No 301
>cd01642 Arch_FBPase_2 Putative fructose-1,6-bisphosphatase or related enzymes of inositol monophosphatase family. These are Mg++ dependent phosphatases. Members in this family may have fructose-1,6-bisphosphatase and/or inositol-monophosphatase activity. Fructose-1,6-bisphosphatase catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway.
Probab=29.50 E-value=78 Score=31.58 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=33.0
Q ss_pred CCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCc
Q psy7457 440 NVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENET 477 (497)
Q Consensus 440 N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~ 477 (497)
+..||.+...|..+++.+.+.|++...-.++.|||...
T Consensus 30 k~~~d~vt~aD~~~e~~i~~~L~~~~P~~~ilsEE~g~ 67 (244)
T cd01642 30 GAGGDVTRVADLKAEEIILKLLREEGVFGQIISEESGE 67 (244)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHhhCCCCEEEeCCCCC
Confidence 35678999999999999999999887778899999653
No 302
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.46 E-value=1e+02 Score=31.75 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=50.6
Q ss_pred HHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 72 LCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 72 Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
.+.+-++.. +|+..=++++.. .|.++ .=+|.-+-+|.+++-.+-|++-++.++++||+.
T Consensus 190 ~~~~e~~~~--~al~~~~r~l~l-~P~dp-----~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 190 ALLRELQWE--LALRVAERLLDL-NPEDP-----YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHhhchH--HHHHHHHHHHhh-CCCCh-----hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 344556677 899999999999 99886 457889999999999999999999999999965
No 303
>KOG0376|consensus
Probab=28.88 E-value=27 Score=38.57 Aligned_cols=88 Identities=10% Similarity=-0.080 Sum_probs=58.4
Q ss_pred cCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHH
Q psy7457 30 INPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLST 109 (497)
Q Consensus 30 ~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k 109 (497)
+.-+.|+=.||++|.. ||++.-+.-.||..+-+.+.++ .|+.-..+..+. -|.-.. -.+|
T Consensus 18 ~~fd~avdlysKaI~l-------------dpnca~~~anRa~a~lK~e~~~--~Al~Da~kaie~-dP~~~K----~Y~r 77 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIEL-------------DPNCAIYFANRALAHLKVESFG--GALHDALKAIEL-DPTYIK----AYVR 77 (476)
T ss_pred chHHHHHHHHHHHHhc-------------CCcceeeechhhhhheeechhh--hHHHHHHhhhhc-Cchhhh----eeee
Confidence 3345566677777775 9999999999999999999999 999999999999 554320 0111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHccCC
Q psy7457 110 RAAHVYHTARNFPQAASSLAIAFQYSAHL 138 (497)
Q Consensus 110 ~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~ 138 (497)
=|..+...++.-+|...|+..-.-.|+.
T Consensus 78 -rg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 78 -RGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred -ccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 1223334444455555555544444544
No 304
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.67 E-value=82 Score=20.12 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 144 CNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 144 vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
.|.+..-|...|++++|.+++...-+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 58889999999999999999987543
No 305
>PF13041 PPR_2: PPR repeat family
Probab=27.33 E-value=1.9e+02 Score=20.96 Aligned_cols=38 Identities=5% Similarity=-0.046 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCCChHHHHHHH
Q psy7457 271 LDIAEALIQEHYEAYAVQVLVLLVSSEKYNQPGVWKQL 308 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~~L~~~~~y~~~~vwl~l 308 (497)
--+=.+|.+.|++++|.++|..+....---+...+--+
T Consensus 7 n~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 7 NTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 67778999999999999999999977554444444433
No 306
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=27.03 E-value=2.4e+02 Score=27.64 Aligned_cols=87 Identities=16% Similarity=0.075 Sum_probs=51.4
Q ss_pred cCCCCccHHHHHHHHHHHHHhCCcch--------hHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCC-------
Q psy7457 56 GLSKDTILDNRARRLRLCDEIGLKNR--------GFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARN------- 120 (497)
Q Consensus 56 ~~~~p~n~~~~~~RA~Ly~elG~~~~--------~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~------- 120 (497)
...||.|.+++.+=...+-++.+++. -.|+.-|+..+++ .|... +.+=.+...|.+.+.
T Consensus 18 y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~h-----dAlw~lGnA~ts~A~l~~d~~~ 91 (186)
T PF06552_consen 18 YAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKH-----DALWCLGNAYTSLAFLTPDTAE 91 (186)
T ss_dssp HHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-H-----HHHHHHHHHHHHHHHH---HHH
T ss_pred HHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchH-----HHHHHHHHHHHHHHhhcCChHH
Confidence 45689999988888888888877752 2577888999999 88764 455555555554433
Q ss_pred ----HHHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy7457 121 ----FPQAASSLAIAFQYSAHLIRPEHCNLYLEVL 151 (497)
Q Consensus 121 ----~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~ 151 (497)
+++|.+-+++|.+..|+. +.-+.-+|+-
T Consensus 92 A~~~F~kA~~~FqkAv~~~P~n---e~Y~ksLe~~ 123 (186)
T PF06552_consen 92 AEEYFEKATEYFQKAVDEDPNN---ELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Confidence 345555555555555643 4444444444
No 307
>KOG1914|consensus
Probab=26.33 E-value=2.4e+02 Score=32.25 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=48.3
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7457 53 IQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF 132 (497)
Q Consensus 53 ~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~ 132 (497)
++++..+|.|++.+..-.+ +.|-.+--++.+.|+++++. +|..+.-|-.-+-+++| .++++.--.++.+++
T Consensus 10 ~~rie~nP~di~sw~~lir---e~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~-----skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIR---EAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELA-----SKDFESVEKLFSRCL 80 (656)
T ss_pred HHHHhcCCccHHHHHHHHH---HHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHH-----hhhHHHHHHHHHHHH
Confidence 4566789999999876444 44433333899999999999 99998544444444444 355555555555555
Q ss_pred HH
Q psy7457 133 QY 134 (497)
Q Consensus 133 ~~ 134 (497)
.+
T Consensus 81 vk 82 (656)
T KOG1914|consen 81 VK 82 (656)
T ss_pred HH
Confidence 43
No 308
>KOG2041|consensus
Probab=26.27 E-value=7.1e+02 Score=29.69 Aligned_cols=80 Identities=16% Similarity=0.092 Sum_probs=50.0
Q ss_pred HHhhcCCCCchhHHhhccccCcccccccchhhhhHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHhcccHHHHHHHHHHHh
Q psy7457 216 TLVHLRSETQFPTLLASLKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKEL-VYLDIAEALIQEHYEAYAVQVLVLLV 294 (497)
Q Consensus 216 ~ll~Lg~~~~~~~l~~~l~e~~ee~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~-~~ldvaeAl~e~g~y~~Al~~l~~L~ 294 (497)
+-++|++-.++-.+.+.+ ...+++. |. -..|.||++- =++|.-+-+-+.|.+-+|-+++..+-
T Consensus 887 tCv~LnQW~~avelaq~~--~l~qv~t--li------------ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRF--QLPQVQT--LI------------AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHHHHHHHHhc--cchhHHH--HH------------HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 446777776666665433 3335666 66 3456666643 66777788888888888888887777
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy7457 295 SSEKYNQPGVWKQLAETY 312 (497)
Q Consensus 295 ~~~~y~~~~vwl~lAeCy 312 (497)
..+.-.-.. .+++-+||
T Consensus 951 e~e~~K~~p-~lr~KklY 967 (1189)
T KOG2041|consen 951 EREQEKYVP-YLRLKKLY 967 (1189)
T ss_pred HHHhhccCC-HHHHHHHH
Confidence 665433222 45555664
No 309
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.01 E-value=1.8e+02 Score=28.75 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCCChHHHHHHHHHHHhhhcccccCCcccee---hhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhH
Q psy7457 7 SYENPQEYYSLLNLVLSQHSIQVINPDESRY---ILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGF 83 (497)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y---~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~ 83 (497)
.|++=+.|..++.-+|-+-+.--..-+.-+| |+||+=.- +|.|..++-- .++-=.- .
T Consensus 28 r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG---------------~~LD~~Fd~~---~~~TPLE--S 87 (200)
T cd00280 28 RYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEG---------------KNLDCQFEND---EELTPLE--S 87 (200)
T ss_pred ChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcC---------------CCCCCccCCC---CCcChHH--H
Confidence 4555666777777666554433222223333 56665443 3333333210 0011112 5
Q ss_pred HHHHHHHHHhccCCCC--ChhhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHccC
Q psy7457 84 VLAGYQRYLKNITPDS--DPQTILDLSTRAAH-VYHTARNFPQAASSLAIAFQYSAH 137 (497)
Q Consensus 84 Al~~y~~il~~~~P~d--~~~~~~~~~k~LA~-~Y~e~~~~~~Ai~~le~a~~~~~~ 137 (497)
|+..+..|-+- .|.. ..+.+..++|+.|. +|++.|.+.+|++++++.|. .|+
T Consensus 88 Al~v~~~I~~E-~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~ 142 (200)
T cd00280 88 ALMVLESIEKE-FSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPE 142 (200)
T ss_pred HHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCC
Confidence 77777777766 6653 45667777777664 69999999999999999998 443
No 310
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=25.58 E-value=1.5e+02 Score=32.59 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCCC-ChhHHHHHHHHHHhhccHHHHHHHHHHhc
Q psy7457 109 TRAAHVYHTARNFPQAASSLAIAFQYSAHLI-RPEHCNLYLEVLLELKRYETCVEVLRRFA 168 (497)
Q Consensus 109 k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f-~~~~vNiLaEL~i~~k~y~~al~~I~~~~ 168 (497)
.-+.+.|.+.|..++|++++..=..+ +.| |....|+|.+.++..|.|+.|+++....+
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~y--GiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQY--GIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhc--ccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 46788999999999999998874442 223 44669999999999999999999965544
No 311
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=24.65 E-value=6.4e+02 Score=26.94 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcc----CCCCC-----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy7457 66 RARRLRLCDEIGLKNRGFVLAGYQRYLKNI----TPDSD-----------PQTILDLSTRAAHVYHTARNFPQAASSLAI 130 (497)
Q Consensus 66 ~~~RA~Ly~elG~~~~~~Al~~y~~il~~~----~P~d~-----------~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~ 130 (497)
.|+-..+.+++.... --++.+.+++..+ +|... -+..++++-.+|+.|.+.|.+++|+++-++
T Consensus 227 v~e~es~~rqi~~in--ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 227 VQEYESLARQIEAIN--LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred HHHHHHHhhhhhccc--cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q ss_pred HHHHccCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchh
Q psy7457 131 AFQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANI 170 (497)
Q Consensus 131 a~~~~~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~ 170 (497)
++..+| -+-++--+|.-+|...|.=-.+++.-.+++++
T Consensus 305 ~ltldp--L~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 305 ALTLDP--LSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HhhcCh--hhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
No 312
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=24.63 E-value=7.1e+02 Score=26.29 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC-------CChhHH-----HHHHHHHHhhccHHHHHHHHHHhchhe
Q psy7457 104 ILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL-------IRPEHC-----NLYLEVLLELKRYETCVEVLRRFANIE 171 (497)
Q Consensus 104 ~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~-------f~~~~v-----NiLaEL~i~~k~y~~al~~I~~~~~~~ 171 (497)
.+.++.+.|+..+-..|+..|++.=|+.++.-.+. .+-.++ -+=.--+...++|++++-|+.++-+
T Consensus 34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq-- 111 (309)
T PF07163_consen 34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQ-- 111 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 35799999999999999999999999999865321 111121 1112223345799999998877553
Q ss_pred eeeccCCCCCCCCCccccccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHH-hhcc-ccCc--ccccccchhh
Q psy7457 172 ITYFKLFPQDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTL-LASL-KFDV--EMYGTITVYL 247 (497)
Q Consensus 172 l~~~~~~~~D~e~d~~~~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l-~~~l-~e~~--ee~~D~~Ly~ 247 (497)
.|+++ |..| .+|+|+ +|-.-.+....+ +... ..++ ...++ |
T Consensus 112 -------------------------~pEkl----PpkI-leLCIL-LysKv~Ep~amlev~~~WL~~p~Nq~lp~---y- 156 (309)
T PF07163_consen 112 -------------------------VPEKL----PPKI-LELCIL-LYSKVQEPAAMLEVASAWLQDPSNQSLPE---Y- 156 (309)
T ss_pred -------------------------CcccC----CHHH-HHHHHH-HHHHhcCHHHHHHHHHHHHhCcccCCchh---h-
Confidence 36777 7776 467663 444444443322 1111 2222 22222 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHH-----HHhcccHHHHHHHHHHHhcCCCCChHH
Q psy7457 248 DIAEALIQEHYEAYAVQFKELVYLDIAEA-----LIQEHYEAYAVQVLVLLVSSEKYNQPG 303 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~ldvaeA-----l~e~g~y~~Al~~l~~L~~~~~y~~~~ 303 (497)
.-|||- +.=.|.+++|.++- +++..|....
T Consensus 157 -----------------------~~vaELyLl~VLlPLG~~~eAeelv---~gs~af~EeQ 191 (309)
T PF07163_consen 157 -----------------------GTVAELYLLHVLLPLGHFSEAEELV---VGSAAFTEEQ 191 (309)
T ss_pred -----------------------HHHHHHHHHHHHhccccHHHHHHHH---hcCCCCCHHH
Confidence 444444 45579999999987 7787787433
No 313
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=24.56 E-value=1.5e+02 Score=25.22 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=41.6
Q ss_pred HHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHH
Q psy7457 71 RLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASS 127 (497)
Q Consensus 71 ~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~ 127 (497)
.|| +..+.. +|+....++|+. .+... + -+.++=-|+..|.+.|+..+++.-
T Consensus 15 kLY-~~~~~~--~Al~~W~~aL~k-~~~~~-~-rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 15 KLY-HQNETQ--QALQKWRKALEK-ITDRE-D-RFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHh-ccchHH--HHHHHHHHHHhh-cCChH-H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355 566777 999999999999 77754 3 457999999999999999987754
No 314
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=23.91 E-value=43 Score=26.10 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.2
Q ss_pred CCCcchhHHHHHHHhhcCCCC
Q psy7457 204 VPPPEILSKFVITLVHLRSET 224 (497)
Q Consensus 204 ~lPiDLr~KLgI~ll~Lg~~~ 224 (497)
+||.|+|-+++.+++-|++.+
T Consensus 30 ~L~p~lR~~lv~aLiLLRnK~ 50 (52)
T PF08158_consen 30 VLDPDLRMKLVKALILLRNKD 50 (52)
T ss_pred cCCHHHHHHHHHHHHHHHccC
Confidence 349999999999999988765
No 315
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=23.90 E-value=2.4e+02 Score=25.51 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=49.3
Q ss_pred hhHHHHHHHhhcCCCCchhHHhhcc-ccCcc-------------cccccchhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy7457 209 ILSKFVITLVHLRSETQFPTLLASL-KFDVE-------------MYGTITVYLDIAEALIQEHYEAYAVQFKELVYLDIA 274 (497)
Q Consensus 209 Lr~KLgI~ll~Lg~~~~~~~l~~~l-~e~~e-------------e~~D~~Ly~~~~~~~~~~~~~~~~~~~~~~~~ldva 274 (497)
+-+-+.+|+-|.|+.+..+.++... .-++. -+++.+ ++.-|+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~------------------------lL~AIv 59 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSR------------------------LLIAIV 59 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHH------------------------HHHHHH
Confidence 4456778888999988888887665 11111 233333 449999
Q ss_pred HHHHhcccHHHHHHHHHHHhcCCCCC
Q psy7457 275 EALIQEHYEAYAVQVLVLLVSSEKYN 300 (497)
Q Consensus 275 eAl~e~g~y~~Al~~l~~L~~~~~y~ 300 (497)
.||.-.|++..|+++.......-.-.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~ 85 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIP 85 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999888766533
No 316
>KOG2396|consensus
Probab=23.78 E-value=3.5e+02 Score=30.60 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=58.5
Q ss_pred CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHccC
Q psy7457 59 KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARN-FPQAASSLAIAFQYSAH 137 (497)
Q Consensus 59 ~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~-~~~Ai~~le~a~~~~~~ 137 (497)
=|.|+.++.+-+.-+++.+-++ +--..|-++++. .|.+. +-|+ ..|.--++-|. ++.|.+++.+.+..||+
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~--~v~ki~~~~l~~-Hp~~~-dLWI----~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYG--EVKKIFAAMLAK-HPNNP-DLWI----YAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchh--HHHHHHHHHHHh-CCCCc-hhHH----hhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 3457889999999999999999 889999999999 99987 3343 34444455555 99999999999999997
Q ss_pred C
Q psy7457 138 L 138 (497)
Q Consensus 138 ~ 138 (497)
.
T Consensus 173 s 173 (568)
T KOG2396|consen 173 S 173 (568)
T ss_pred C
Confidence 5
No 317
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=23.36 E-value=1.2e+02 Score=21.57 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=20.1
Q ss_pred HHHHHHHHhcccHHHHHHHHH--HHhcCC
Q psy7457 271 LDIAEALIQEHYEAYAVQVLV--LLVSSE 297 (497)
Q Consensus 271 ldvaeAl~e~g~y~~Al~~l~--~L~~~~ 297 (497)
.-.|-.+...|+|++|+++|. -|..-+
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 567888999999999999944 665443
No 318
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.23 E-value=2.8e+02 Score=27.69 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccCCCChhHHHHHHHHH-HhhccHHHHHHHHHHhc
Q psy7457 108 STRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVL-LELKRYETCVEVLRRFA 168 (497)
Q Consensus 108 ~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~f~~~~vNiLaEL~-i~~k~y~~al~~I~~~~ 168 (497)
+-.+|+++.+.++++++++.+..+.+..+ .++-++-|+|.--| -..+....++++|....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~-eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP-ELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 45789999999999999999999999955 45889999998877 33366677777776644
No 319
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.84 E-value=2.7e+02 Score=26.27 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 83 FVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 83 ~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
..++-.++.++. .|.. .+...+|..+.-+|+.++|.+.+.++...+|
T Consensus 129 ~~~~~a~~~l~~-~P~~------~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRR-RPDP------NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHh-CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444556677777 7865 5899999999999999999999999999999
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=21.70 E-value=6.1e+02 Score=28.67 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=60.7
Q ss_pred CcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHccCCCChhHH-----HHHHHHH
Q psy7457 78 LKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYH-TARNFPQAASSLAIAFQYSAHLIRPEHC-----NLYLEVL 151 (497)
Q Consensus 78 ~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~-e~~~~~~Ai~~le~a~~~~~~~f~~~~v-----NiLaEL~ 151 (497)
..+ .|+.+++.+++. .+..+-.+. .+--++|.+|+ +..+++.|...+++++.-+.. -+..|+ -+++.+|
T Consensus 36 LI~--~ai~CL~~~~~~-~~l~p~~ea-~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 36 LIA--TAIKCLEAVLKQ-FKLSPRQEA-RVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIY 110 (608)
T ss_pred HHH--HHHHHHHHHhcc-CCCCHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHH
Confidence 345 889999999976 555554444 34456777777 899999999999999997754 333333 3557777
Q ss_pred HhhccHHHHHHHHHHhch
Q psy7457 152 LELKRYETCVEVLRRFAN 169 (497)
Q Consensus 152 i~~k~y~~al~~I~~~~~ 169 (497)
-+.+... |++.+.+...
T Consensus 111 ~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred HhcCHHH-HHHHHHHHHH
Confidence 7776666 8887776543
No 321
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=21.33 E-value=1.6e+02 Score=26.60 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc
Q psy7457 106 DLSTRAAHVYHTARNFPQAASSLAIAFQYSA 136 (497)
Q Consensus 106 ~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~ 136 (497)
+++..++..|..+|++..|+.+...+..+||
T Consensus 53 ~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 53 RLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999999999997
No 322
>PF12854 PPR_1: PPR repeat
Probab=21.02 E-value=1.3e+02 Score=20.59 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHH
Q psy7457 144 CNLYLEVLLELKRYETCVEVLR 165 (497)
Q Consensus 144 vNiLaEL~i~~k~y~~al~~I~ 165 (497)
.|+|+.-|.+.|+.++|.+++.
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555555555555555443
No 323
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=20.72 E-value=2.3e+02 Score=29.72 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=30.1
Q ss_pred hcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Q psy7457 55 RGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRY 91 (497)
Q Consensus 55 ~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~i 91 (497)
+...+|.|+..+.=-..||..+|-.. .|++-|.++
T Consensus 209 ~l~~s~~n~~~~LlLvrlY~~LG~~~--~A~~~~~~L 243 (365)
T PF09797_consen 209 ALKKSPHNYQLKLLLVRLYSLLGAGS--LALEHYESL 243 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHhc
Confidence 34468999999999999999999999 999988765
No 324
>KOG4340|consensus
Probab=20.70 E-value=4.5e+02 Score=28.17 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=72.9
Q ss_pred CCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q psy7457 59 KDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQ----- 133 (497)
Q Consensus 59 ~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~----- 133 (497)
.|++.-.+---+-.|-...++- .|.++|.++-+. .|... +.----|+..++.+.+.+|..+.....+
T Consensus 40 ~p~~rAgLSlLgyCYY~~Q~f~--~AA~CYeQL~ql-~P~~~-----qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~ 111 (459)
T KOG4340|consen 40 SPRSRAGLSLLGYCYYRLQEFA--LAAECYEQLGQL-HPELE-----QYRLYQAQSLYKACIYADALRVAFLLLDNPALH 111 (459)
T ss_pred CccchHHHHHHHHHHHHHHHHH--HHHHHHHHHHhh-ChHHH-----HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHH
Confidence 3444443434444566666677 777777777777 77654 2222334455555555555554433222
Q ss_pred -----------Hc--------------cCCCChhHHHHHHHHHHhhccHHHHHHHHHHhchheeeeccCCCCCCCCCccc
Q psy7457 134 -----------YS--------------AHLIRPEHCNLYLEVLLELKRYETCVEVLRRFANIEITYFKLFPQDSTSGEES 188 (497)
Q Consensus 134 -----------~~--------------~~~f~~~~vNiLaEL~i~~k~y~~al~~I~~~~~~~l~~~~~~~~D~e~d~~~ 188 (497)
+. |+.-+-.-+|=..=|..+-++|+.|++-.+....+
T Consensus 112 ~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv------------------ 173 (459)
T KOG4340|consen 112 SRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV------------------ 173 (459)
T ss_pred HHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh------------------
Confidence 22 22222223333444555667777777766554431
Q ss_pred cccccccccCCCCCCCCCcchhHHHHHHHhhcCCCCchhHHhhcc
Q psy7457 189 NIQITNYTVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASL 233 (497)
Q Consensus 189 ~~~~~~~~~p~~l~l~lPiDLr~KLgI~ll~Lg~~~~~~~l~~~l 233 (497)
..+ -+-+-.-++.|+.+-|+...+-.+.+.+
T Consensus 174 ----------sGy----qpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 174 ----------SGY----QPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred ----------cCC----CchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 111 2335566777888888887766666554
No 325
>PF13041 PPR_2: PPR repeat family
Probab=20.69 E-value=1.3e+02 Score=21.92 Aligned_cols=27 Identities=7% Similarity=0.279 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 143 HCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 143 ~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
..|++..-|.+.|++++|+++++...+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 358999999999999999999988764
No 326
>cd01643 Bacterial_IMPase_like_2 Bacterial family of Mg++ dependent phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate inositol monophosphate or similar substrates.
Probab=20.66 E-value=1.3e+02 Score=29.87 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=32.6
Q ss_pred cCCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCc
Q psy7457 439 VNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENET 477 (497)
Q Consensus 439 ~N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~ 477 (497)
.+..|+.+...|..+++.+.+.|++...-.++.|||...
T Consensus 27 ~K~~~d~vT~aD~~~e~~i~~~L~~~~P~~~i~gEE~~~ 65 (242)
T cd01643 27 TKADGSLVTAADRWVEQLIRARLAAQFPDDGVLGEEGGG 65 (242)
T ss_pred ecCCCCcccHHHHHHHHHHHHHHHHHCCCCeEEecCCCC
Confidence 344678899999999999999999876567899999754
No 327
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=20.54 E-value=8.6e+02 Score=24.28 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCC-C-ChhHHHHHHHHHHhhccHHHHHHHHHHhch
Q psy7457 106 DLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL-I-RPEHCNLYLEVLLELKRYETCVEVLRRFAN 169 (497)
Q Consensus 106 ~~~k~LA~~Y~e~~~~~~Ai~~le~a~~~~~~~-f-~~~~vNiLaEL~i~~k~y~~al~~I~~~~~ 169 (497)
+..-..|++..+.|+++.|..++..+....+.. . ...-.--.+-++-..|+-.+|++.++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455577888889999999999999888866332 1 333344467788888899999999887665
No 328
>KOG4555|consensus
Probab=20.35 E-value=5.1e+02 Score=24.69 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=70.6
Q ss_pred Hhhhccc---ccCCccceehhhcccCcchhhhHHHhhcCCCCccHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhccCCC
Q psy7457 22 LSQHSIQ---VINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCDEIGLKNRGFVLAGYQRYLKNITPD 98 (497)
Q Consensus 22 ~~~~~~~---~~~~~~~~y~~~r~~~~~~~~~~~~~~~~~~p~n~~~~~~RA~Ly~elG~~~~~~Al~~y~~il~~~~P~ 98 (497)
|+..+|. .-.++.|+=-|++++.. -|++...+-.||.-|+-.|+.. +|++-..+.+.+ --.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l-------------~P~raSayNNRAQa~RLq~~~e--~ALdDLn~AleL-ag~ 109 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCL-------------APERASAYNNRAQALRLQGDDE--EALDDLNKALEL-AGD 109 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHh-------------cccchHhhccHHHHHHHcCChH--HHHHHHHHHHHh-cCc
Confidence 4444444 44567777777777764 6888999999999999999999 999999999999 332
Q ss_pred CChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy7457 99 SDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQ 133 (497)
Q Consensus 99 d~~~~~~~~~k~LA~~Y~e~~~~~~Ai~~le~a~~ 133 (497)
- +-+--..--.=+.+|.-.|+-++|..=++.+-.
T Consensus 110 ~-trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 110 Q-TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred c-chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 2 222223333456788899999999988887754
No 329
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.12 E-value=1.5e+02 Score=29.71 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=38.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHH------HccCCC-------ChhHHHHHHHHHHhhccHHHHHHHHHH
Q psy7457 113 HVYHTARNFPQAASSLAIAFQ------YSAHLI-------RPEHCNLYLEVLLELKRYETCVEVLRR 166 (497)
Q Consensus 113 ~~Y~e~~~~~~Ai~~le~a~~------~~~~~f-------~~~~vNiLaEL~i~~k~y~~al~~I~~ 166 (497)
-.||..-+-.+...++...-+ .-+..+ .+.-+|+.+|+++..|..+-|+.+++.
T Consensus 140 ~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 140 YSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345666566666655554443 223344 456799999999999999999999985
No 330
>TIGR02067 his_9_proposed histidinol-phosphate phosphatase HisN, inositol monophosphatase family. This subfamily belongs to the inositol monophosphatase family (pfam00459). The members of this family consist of no more than one per species and are found only in species in which histidine is synthesized de novo but no histidinol phosphatase can be found in either of the two described families (TIGR01261, TIGR01856). In at least one species, the member of this family is found near known histidine biosynthesis genes.
Probab=20.02 E-value=1.3e+02 Score=29.68 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCcchhhhhhhhhhhHHHHHHhccccCeeEEecCCCCc
Q psy7457 440 NVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENET 477 (497)
Q Consensus 440 N~~GE~QkkLDV~Anelf~~aL~~s~~Va~~aSEE~e~ 477 (497)
+..++.+...|..+++.+.+.|++...-.++.|||...
T Consensus 30 k~~~d~vT~aD~~~e~~i~~~L~~~~P~~~il~EE~~~ 67 (251)
T TIGR02067 30 KSDKTPVTEADRAAEEAMRELIAAFFPDHGILGEEFGH 67 (251)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHCCCCEEEecccCC
Confidence 34567888999999999999999875567899999654
Done!