RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7457
(497 letters)
>gnl|CDD|238214 cd00354, FBPase, Fructose-1,6-bisphosphatase, an enzyme that
catalyzes the hydrolysis of fructose-1,6-biphosphate
into fructose-6-phosphate and is critical in
gluconeogenesis pathway. The alignment model also
includes chloroplastic FBPases and
sedoheptulose-1,7-biphosphatases that play a role in
pentose phosphate pathway (Calvin cycle).
Length = 315
Score = 77.2 bits (191), Expect = 1e-15
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 430 ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTG 489
A L +VNVQG+E KKLDVL+N++F+ L SS +L SEE E + + +E+ G
Sbjct: 38 AGLLGLAGSVNVQGDEQKKLDVLANDIFIEALKSSGVVAVLASEEEEEPVPV--EESKDG 95
Query: 490 DPCVRLD 496
V D
Sbjct: 96 KYLVAFD 102
>gnl|CDD|215147 PLN02262, PLN02262, fructose-1,6-bisphosphatase.
Length = 340
Score = 71.4 bits (175), Expect = 1e-13
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 389 SKVVLNLMNLITLRSSDIRIVRNTLRT----FQSKPNNLGLNVMYANNCNLTSNVNVQGE 444
++ VLN + D+ I+ + + S N GL A L NVQGE
Sbjct: 16 TRFVLNEQSKHPEARGDLTILLSHIVLGCKFVCSAVNKAGL----AKLIGLAGETNVQGE 71
Query: 445 EVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVRLD 496
E KKLDVLSN++F+ L SS T +LVSEE+E A I + + G CV D
Sbjct: 72 EQKKLDVLSNDVFIKALVSSGRTNVLVSEEDEEA--IFVEPSKRGRYCVVFD 121
>gnl|CDD|236458 PRK09293, PRK09293, fructose-1,6-bisphosphatase; Provisional.
Length = 327
Score = 62.2 bits (152), Expect = 1e-10
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 436 TSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEAS 487
NVQGE KKLDV +NE+ + L + L SEE + + I E
Sbjct: 53 AGTENVQGETQKKLDVFANEILIEALKARGHVAGLASEEEDEIVPIPENEGK 104
>gnl|CDD|215854 pfam00316, FBPase, Fructose-1-6-bisphosphatase.
Length = 325
Score = 62.4 bits (152), Expect = 1e-10
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 430 ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETA 478
AN NVQG+E KKLDVL+++LF L +S + +L SEE +
Sbjct: 44 ANLLGGAGGTNVQGDEQKKLDVLADDLFRAALKASGAVAVLASEEQDEL 92
>gnl|CDD|223236 COG0158, Fbp, Fructose-1,6-bisphosphatase [Carbohydrate transport
and metabolism].
Length = 326
Score = 54.2 bits (131), Expect = 5e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 430 ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEAS 487
A + NVQG+ KKLDV +NE+ + L + + + SEE + + S
Sbjct: 46 AGVLGYSGAENVQGDTQKKLDVFANEILIEALKARGNVAGIASEEEDEPVTFPENNGS 103
>gnl|CDD|215298 PLN02542, PLN02542, fructose-1,6-bisphosphatase.
Length = 412
Score = 53.7 bits (129), Expect = 1e-07
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 427 VMYANNCNLTS---NVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHH 483
V A NLT VN+QGE+ KKLDV+SNE+F N L SS T ++ SEE + + +
Sbjct: 114 VQRAGISNLTGVQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAV-- 171
Query: 484 QEASTGDPCVRLD 496
+E+ +G+ V D
Sbjct: 172 EESYSGNYIVVFD 184
>gnl|CDD|238814 cd01636, FIG, FIG, FBPase/IMPase/glpX-like domain. A superfamily of
metal-dependent phosphatases with various substrates.
Fructose-1,6-bisphospatase (both the major and the
glpX-encoded variant) hydrolyze
fructose-1,6,-bisphosphate to fructose-6-phosphate in
gluconeogenesis. Inositol-monophosphatases and inositol
polyphosphatases play vital roles in eukaryotic
signalling, as they participate in metabolizing the
messenger molecule Inositol-1,4,5-triphosphate. Many of
these enzymes are inhibited by Li+.
Length = 184
Score = 36.6 bits (85), Expect = 0.013
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 440 NVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALE 480
+ V DV + L NML SS+ +V EE+ A E
Sbjct: 31 KSDNDPVTTADVAAETLIRNMLKSSFPDVKIVGEESGVAEE 71
>gnl|CDD|202322 pfam02631, RecX, RecX family. RecX is a putative bacterial
regulatory protein. The gene encoding RecX is found
downstream of recA, and is thought to interact with the
RecA protein.
Length = 115
Score = 31.0 bits (71), Expect = 0.48
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 33 DESRYILSRVRT--------PKKIEHILIQRGLSKDTI 62
D+ R+ S VR+ P++I L Q+G+ + I
Sbjct: 24 DDERFAESFVRSRLRTKGKGPRRIRQELRQKGVDDELI 61
>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 546
Score = 32.0 bits (72), Expect = 0.80
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KNLDSKVVLNLMNLITLRS-SDIRIVRNTLRTFQSKPNNLGLNVMYANNCNLTSNVNVQG 443
KNL K + N+ + S +DI +++NT ++ Q K + + A N + T++ N Q
Sbjct: 361 KNLIDKTQTSKSNISPIVSKNDINLLKNTFKSEQPKQT---VKAVVAQNNDSTASENTQE 417
Query: 444 EEV-KKLDVLSNELFVNMLTSSYS-TCLLVSEENETALEIHHQE 485
+ + KK L N + + T + + L+S+ +ET IH E
Sbjct: 418 QSLDKKWFNLLNRIKLKGFTKTLAFNSHLISDNSET-FVIHLNE 460
>gnl|CDD|225048 COG2137, OraA, Uncharacterized protein conserved in bacteria
[General function prediction only].
Length = 174
Score = 30.4 bits (69), Expect = 1.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 36 RYILSRVRT---PKKIEHILIQRGLSKDTI 62
YI SR R P +++ L Q+G+ + I
Sbjct: 75 AYIRSRSRKGKGPARLKQELKQKGIDDEII 104
>gnl|CDD|225488 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid
metabolism].
Length = 810
Score = 31.2 bits (71), Expect = 1.4
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 14 YYSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLC 73
YY LL L LS V P + LS + T + IE++L LD + L+L
Sbjct: 8 YYKLLMLPLSALVKSVPIPADPAVELS-LDTSRPIEYVLPYLSQQDLLTLDAKCLALKLP 66
Query: 74 D 74
D
Sbjct: 67 D 67
>gnl|CDD|117576 pfam09010, AsiA, Anti-Sigma Factor A. Anti-sigma factor A is a
transcriptional inhibitor that inhibits sigma
70-directed transcription by weakening its interaction
with the core of the host's RNA polymerase. It is an
all-helical protein, composed of six helical segments
and intervening loops and turns, as well as a
helix-turn-helix DNA binding motif, although neither
free anti-sigma factor nor anti-sigma factor bound to
sigma-70 has been shown to interact directly with DNA.
In solution, the protein forms a symmetric dimer of
small (10.59 kDa) protomers, which are composed of
helix and coil regions and are devoid of
beta-strand/sheet secondary structural elements.
Length = 91
Score = 28.6 bits (64), Expect = 1.9
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 51 ILIQRGLSKDTILDNRARRLRLCDEIGLKN---RGFVLAGYQRYLKNITPD 98
+LI+ ++ I++N+A + +E G + R F +++ +K +T +
Sbjct: 17 LLIK--FGREDIVENQANFISFLNEAGFRTPTGREFTQMSFRQMIKRLTQE 65
>gnl|CDD|238815 cd01637, IMPase_like, Inositol-monophosphatase-like domains. This
family of phosphatases is dependent on bivalent metal
ions such as Mg++, and many members are inhibited by Li+
(which is thought to displace a bivalent ion in the
active site). Substrates include
fructose-1,6-bisphosphate, inositol poly- and
monophosphates, PAP and PAPS,
sedoheptulose-1,7-bisphosphate and probably others.
Length = 238
Score = 30.0 bits (68), Expect = 2.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 443 GEEVKKLDVLSNELFVNMLTSSYSTCLLVSEE 474
G+ V + D+ + EL V++L + + ++ EE
Sbjct: 32 GDLVTEADLAAEELIVDVLKALFPDDGILGEE 63
>gnl|CDD|226445 COG3935, DnaD, Putative primosome component and related proteins
[DNA replication, recombination, and repair].
Length = 246
Score = 29.7 bits (67), Expect = 3.3
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 11/115 (9%)
Query: 346 VLIKDSTEHLDQLSLDATTVLYKTGHIPHAYQLFR-VLMLKNLD------SKVVLNLMNL 398
V+ + H QL L +L G + + + V + NL
Sbjct: 16 VIPQALLVHYGQLFLSELDLLILLGFKLFSETSREDPKPSELAERITTTIKDVNKTIRNL 75
Query: 399 ITLRSSDIRI--VRNTLRTFQSK-PNNLGLNVMYANNCNL-TSNVNVQGEEVKKL 449
+ NT++ Q P L ++ NN +L + + Q E+ K+L
Sbjct: 76 TGRGLLQGTQEEIDNTIKYEQDNSPPLWKLLQLFVNNKSLEDNELKNQNEDKKEL 130
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 29.9 bits (68), Expect = 4.2
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 27 IQVINPDESRYILSRVRTPKKIEHILIQR-GLSK---DTILDNRARRLRLCDEIGLKNRG 82
I ++N DE I+ + + + L+ R GLS+ + ILD R RRL +E ++
Sbjct: 384 IALLNIDEVIEIIRESKDKPEAKEELMARFGLSEKQAEAILDLRLRRLTGLEEEKIEKEL 443
Query: 83 FVLAGYQRYLKNITPDSDPQTILDL 107
L L+ I + + +LD+
Sbjct: 444 KELEKEIADLEKI--LASEERLLDI 466
>gnl|CDD|211996 TIGR04273, Y_sulf_Ax21, sulfation-dependent quorum factor, Ax21
family. This family consists of proteins closely
related to Ax21 (Activator of XA21-mediated immunity), a
protein that is secreted by a type I secretion system
(RaxABC), and that appears to be sulfated on an
N-terminal region tryosine in a motif LSYN. Ax21 acts in
a quorum-sensing system. Homologous peptide-mediated
quorum-sensing systems appear to exist in other species,
such as the emerging opportunistic pathogen
Stenotrophomonas maltophilia. Intriguingly, the rice
genome encodes a receptor (XA21) for this protein that
triggers innate immunity [Cellular processes,
Pathogenesis].
Length = 186
Score = 29.0 bits (65), Expect = 4.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 75 EIGLKN------RGFVLAGYQRYLKNITPDSDPQTILDLSTRA 111
E+GL+ + LAGY+ YLK D D Q L +A
Sbjct: 114 EVGLRTAFGPYLEVYALAGYEDYLKKDGIDPDGQFYGRLGAQA 156
>gnl|CDD|236187 PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional.
Length = 488
Score = 29.1 bits (66), Expect = 5.8
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 20/74 (27%)
Query: 38 ILSRVRTPKKIEHILIQRGLSKDTIL-----DNRARR--LRLCDEIGLKNRGFVLAGYQR 90
IL+ +R P KI H L+ GLSK+ I + +L EI + F+
Sbjct: 104 ILTGIR-PTKILHKLLDEGLSKEEIHKELKEEYLISEEKAKLLLEIAKRELSFL------ 156
Query: 91 YLKNITPDSDPQTI 104
D +
Sbjct: 157 ------LYRDKNEV 164
>gnl|CDD|215337 PLN02628, PLN02628, fructose-1,6-bisphosphatase family protein.
Length = 351
Score = 28.6 bits (64), Expect = 7.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 447 KKLDVLSNELFVNMLTSSYSTCLLVSEENE 476
K LD++SNE+ ++ L +S ++ SEE++
Sbjct: 80 KPLDIVSNEIILSSLRNSGKVAVMASEEDD 109
>gnl|CDD|236783 PRK10875, recD, exonuclease V subunit alpha; Provisional.
Length = 615
Score = 28.8 bits (65), Expect = 9.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 84 VLAGYQRYLKNITPDSDPQTILD 106
LAGY RYL + ++P+ IL
Sbjct: 414 ALAGYGRYLDLLAARAEPEAILA 436
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.378
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,729,634
Number of extensions: 2416470
Number of successful extensions: 1977
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1977
Number of HSP's successfully gapped: 30
Length of query: 497
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 396
Effective length of database: 6,457,848
Effective search space: 2557307808
Effective search space used: 2557307808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)