RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7457
(497 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.6 bits (193), Expect = 2e-15
Identities = 76/470 (16%), Positives = 137/470 (29%), Gaps = 164/470 (34%)
Query: 15 YSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCD 74
YS L LS S++ +L+ T A +L+ +
Sbjct: 4 YSTRPLTLSHGSLEH--------------------VLLV------PTASFFIASQLQ--E 35
Query: 75 EIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF-Q 133
+ F + D +P T +L + F
Sbjct: 36 Q-------F-NKILPEPTEGFAADDEPTTPAELVGK---------------------FLG 66
Query: 134 YSAHLIRPEHCNLYLEVL-LELKRYETCVEVLRRFANIEITYF--KLFPQDSTSGEESNI 190
Y + L+ P + +VL L L +E L +I KL ++ T+ ++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFEN--CYLE---GNDIHALAAKLLQENDTTLVKTKE 121
Query: 191 QITNY----TVPSDPNLVPPPEILSKFVITLVHLRSETQFPTLLASLKFDVEMY------ 240
I NY + P L + A + + ++
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFR------------------AVGEGNAQLVAIFGGQ 163
Query: 241 GTITVYLDIAEALIQEHYEAY-----------AVQFKELV---------Y---LDIAEAL 277
G Y + E +++ Y+ Y A EL+ + L+I E L
Sbjct: 164 GNTDDYFE--E--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 278 IQ------EHYEAYA---------VQVLVLLVSSEKYN-QPG-VWKQLAETYEKSECLSG 320
+ Y +Q+ +V+++ PG + L + G
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---TGHSQG 276
Query: 321 VVVSTVDTGSGSW--WFQSMSSAMCSTVLIK---DSTEHLDQLSLDATTVLYKTGH---I 372
+V + + SW +F S+ A+ TVL E SL + + + +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 373 PHAYQLFRVLML--KNLDSKVV---LNLMNLITLRSSDIRI-VRNTLRTF 416
P ML NL + V +N N + I + N +
Sbjct: 335 PSP-------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Score = 57.0 bits (137), Expect = 1e-08
Identities = 72/411 (17%), Positives = 122/411 (29%), Gaps = 120/411 (29%)
Query: 5 GQSYENPQEYYS-LLNL-VLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTI 62
GQ N +Y+ L +L + + + + +RT E + +GL+
Sbjct: 162 GQG--NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-TQGLNILEW 218
Query: 63 LDNRARR-----LRL----CDEIGLKNRGFVLAGYQRYLK--NITPDSDPQTILDLSTRA 111
L+N + L C IG+ LA Y K TP + + +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGV----IQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 112 AHVY--------HTARNFPQAASS-LAIAFQ--YSAHLIRPEHCNLYLEVLLELKRYETC 160
+ + +F + + + F + P + +L +L E
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSIL------EDS 327
Query: 161 VEVLRRFANIEITYFKLFPQDSTSGE-----ESNIQITNYTVPSDP-----------NLV 204
+E + P S S + + TN +P+ NLV
Sbjct: 328 LENNEGVPS---------PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 205 P--PPEILSKFVITLVHLRSETQFPTLLAS--------LKFDVEMYGTITV-----YLDI 249
PP+ L + LR L S LKF + + L
Sbjct: 379 VSGPPQSLYGLNL---TLRKAKAPSGLDQSRIPFSERKLKFSNR-FLPVASPFHSHLLVP 434
Query: 250 AEALIQEHYEAYAVQF--KEL---VYL------------DIAEALIQEHYEAYAVQVLVL 292
A LI + V F K++ VY I+E ++ ++ L
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD--------CIIRL 486
Query: 293 LVSSEKYNQ----------PGVWKQLAETYEKSECLSGV---VVSTVDTGS 330
V E Q PG L +++ +GV V T+D
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 41.6 bits (97), Expect = 6e-04
Identities = 49/329 (14%), Positives = 88/329 (26%), Gaps = 150/329 (45%)
Query: 15 YSLLNLVLSQHSIQVINPDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRLRLCD 74
+S+L++V++ NP I K+I + +TI+D + + ++
Sbjct: 1659 FSILDIVIN-------NPVN-LTIHFGGEKGKRIRENYS--AMIFETIVDGKLKTEKIFK 1708
Query: 75 EIGLKNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAA---SSLAIA 131
EI + + + +L T F Q A A
Sbjct: 1709 EINEHSTSYTFRS-------------EKGLLSA---------TQ--FTQPALTLMEKAA- 1743
Query: 132 FQYSAHLIRPEHCNLYLEVLLELKRYETCVEVLR-RFANIEITYFKLFPQDST----S-G 185
E L+ + L P D+T S G
Sbjct: 1744 -----------------------------FEDLKSKG---------LIPADATFAGHSLG 1765
Query: 186 EESNIQITNYTVPSDPNLVPPPEILSKF--VITLVHLRSETQFPTLLASLKFDVEMYGTI 243
E Y L +++S ++ +V R T ++ V
Sbjct: 1766 E--------YAA-----LASLADVMS-IESLVEVVFYRGMT--------MQVAVP----- 1798
Query: 244 TVYLDIAEALIQEHYEAYAVQFKELVYLDIAEALIQEHYEAYAVQVLVLLVSSEK----- 298
+ L + +Y A+ +A + QE A+Q +V V
Sbjct: 1799 ------RDELGRSNYGMIAINPGR-----VAASFSQE-----ALQYVVERVGKRTGWLVE 1842
Query: 299 ---YNQPGVWKQLAETYEKSECLSGVVVS 324
YN +Q V +
Sbjct: 1843 IVNYNVEN--QQ-------------YVAA 1856
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
conformation, hydrolas; 1.45A {Escherichia coli} PDB:
2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Length = 332
Score = 73.5 bits (181), Expect = 2e-14
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 430 ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIH 482
+ + NVQGE +KLD+ +NE L + + SEE + +
Sbjct: 46 VDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFE 98
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
benzoxazole, intersubunit allosteric inhibition of human
fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Length = 374
Score = 72.4 bits (178), Expect = 6e-14
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 430 ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIH 482
A+ + + NV G++VKKLDVLSN+L +NML SS++TC+LVSEE++ A+ +
Sbjct: 91 AHLYGIAGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVE 143
>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
Length = 337
Score = 71.9 bits (177), Expect = 6e-14
Identities = 26/52 (50%), Positives = 41/52 (78%)
Query: 430 ANNCNLTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEI 481
A+ + + NV G++VKKLDVLSN+L +N+L SS++TC+LVSEE++ A+ +
Sbjct: 54 AHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIV 105
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 71.7 bits (176), Expect = 9e-14
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 435 LTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLVSEENETALEIHHQEASTGDPCVR 494
VN+QGE+ KKLDV+SNE+F N L SS T ++ SEE + + + E+ +G+ V
Sbjct: 67 TQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVE--ESYSGNYIVV 124
Query: 495 LD 496
D
Sbjct: 125 FD 126
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics,
center for structural genomics of infec diseases, csgid;
1.85A {Toxoplasma gondii}
Length = 347
Score = 66.9 bits (164), Expect = 3e-12
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 435 LTSNVNVQGEEVKKLDVLSNELFVNMLTSSYSTCLLV--SEENETALEIHHQ 484
+VN G+E +DV++ L + SS + + SEE+ E H
Sbjct: 65 KVGSVNEFGDEQLTVDVIAENLLRSWAQSSEGSAVRAVCSEEDIHLQECHKN 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 1e-08
Identities = 84/573 (14%), Positives = 172/573 (30%), Gaps = 180/573 (31%)
Query: 15 YSLLNLVLSQHSIQVINP--DESRYILSRVRT-------PK----KIEHIL-IQRGLSKD 60
Y L +S + P YI R R K +++ L +++ L +
Sbjct: 91 YKFL---MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 61 TILDNRARRLRLCDEIGLKNRGF---VLA-------------GYQRY---LKNI-TPDSD 100
A+ + + G+ G +A ++ + LKN +P++
Sbjct: 148 ----RPAKNVLID---GVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 101 PQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHLIRPEHCNLYLEVLLELKRYETC 160
+ + L + + + + +R L LL+ K YE C
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIK------------LRIHSIQAELRRLLKSKPYENC 246
Query: 161 VEVLRRFANIEITYFKLFPQDS----TSGEESNIQITNYTVPSDPNLVPPP--------- 207
+ VL N + + F T+ + + + +L
Sbjct: 247 LLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 208 EILSKFV-ITLVHLRSETQ--FPTLL----ASLKFDVEMYG------------TITVYLD 248
+L K++ L E P L S++ + + I L+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 249 IAE-ALIQEHYEAYAVQFKE--------LVYL----------DIAE-----ALIQEHYEA 284
+ E A ++ ++ +V F L + + +L+++ +
Sbjct: 365 VLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 285 YAVQV--LVLLVSSEKYNQPGVWKQLAETYEKSECLSGVVVSTVDTGSGSWWFQSMSSAM 342
+ + + L + + N+ + + + + Y +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF------------------------ 459
Query: 343 CSTVLIKDSTEHLDQLSLDATTVLYKTGHIPHAYQLFRVLMLKNLDSKVVLNLMNLITLR 402
S LI +LDQ Y HI + L + + + L ++ L
Sbjct: 460 DSDDLIPP---YLDQ---------YFYSHI--GHHLKNIEHPERMT------LFRMVFL- 498
Query: 403 SSDIRIVRNTLRTFQSKPNNLG--LNVM-----YANNCNLTSNVNVQGEEVKKLDVLSNE 455
D R + +R + N G LN + Y + N V + +
Sbjct: 499 --DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLPK 554
Query: 456 LFVNMLTSSYSTCL----LVSEENETALEIHHQ 484
+ N++ S Y T L L++E+ E H Q
Sbjct: 555 IEENLICSKY-TDLLRIALMAEDEAIFEEAHKQ 586
Score = 48.3 bits (114), Expect = 5e-06
Identities = 68/500 (13%), Positives = 154/500 (30%), Gaps = 156/500 (31%)
Query: 32 PDESRYILSRVRTPKKIEHILIQRGLSKDTILDNRARRL-------------RLCDEIGL 78
D + ILS+ ++I+HI++ KD + + RL + +E+
Sbjct: 39 QDMPKSILSK----EEIDHIIMS----KDAV--SGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 79 KNRGFVLAGYQRYLKNITPDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAFQYSAHL 138
N F+++ + T P + + Y R+ + + + ++
Sbjct: 89 INYKFLMSPIK------TEQRQPSMMTRM-------YIEQRDRLYNDNQVFAKY----NV 131
Query: 139 IRPEHCNLYLEVLLELKRYE------------TC--VEVLRRFANIEITYFKLF-----P 179
R + + LLEL+ + T ++V + FK+F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 180 QDSTSGEESNIQITNYTVPSDPNLVPPPEILSKFVIT-------LVHLRSETQFPTLLAS 232
+S +Q Y + DPN + S + L L + L
Sbjct: 192 CNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-- 247
Query: 233 LKFDVEMYGTITVYLDIAEALIQEHYEAYAVQFKELV---YLDIAEALIQEHYEAYAVQV 289
L ++ A + + A+ + K L+ + + + L ++
Sbjct: 248 LVLL-----------NVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-- 291
Query: 290 LVLLVSSEKYNQPGVWKQLAETYEKSECLSGVVVSTVDTGSGSWWFQSMSSAMCSTVLIK 349
+ T E S +++ +D Q + + +T
Sbjct: 292 ----------------DHHSMTLTPDEVKS-LLLKYLDCR-----PQDLPREVLTT---- 325
Query: 350 DSTEHLDQLSLDATTVLYKTGHIPHAYQLFRVLMLKNLDSKVVLNLMNLITLRSSDIRIV 409
+ +LS+ A + G + ++ + L + + +L L ++ R
Sbjct: 326 ----NPRRLSIIAE--SIRDG--LATWDNWKHVNCDKLTTIIESSLNVL---EPAEYR-- 372
Query: 410 RNTLRTFQSKPNNLGLNVMYANNCNLTSNV------NVQGEEVKKLDVLSNELFVNMLTS 463
+ F L ++ + ++ + + +V +V + VN L
Sbjct: 373 ----KMFDR------L-SVFPPSAHIPTILLSLIWFDVIKSDV--------MVVVNKLHK 413
Query: 464 SYSTCLLVSEENETALEIHH 483
L+ + E+ + I
Sbjct: 414 Y---SLVEKQPKESTISIPS 430
Score = 37.9 bits (87), Expect = 0.009
Identities = 28/202 (13%), Positives = 66/202 (32%), Gaps = 54/202 (26%)
Query: 7 SYENPQEY------YSLLN-----LVLSQHSIQV---INPDES----RYILSRVRTPKKI 48
+ YSL+ +S SI + + + R I+ PK
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 49 EHILIQRGLSKDTILDN--------------RARRLRLCDEIGLKNRGFVLAGYQRYLKN 94
+ L LD R+ L + L + F+ ++ +++
Sbjct: 460 D----SDDLIPPY-LDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFL----EQKIRH 509
Query: 95 IT-----PDSDPQTILDLSTRAAHVYHTARNFPQAASSLAIAF--QYSAHLIRPEHCNLY 147
+ S T+ L ++ + + +++ + F + +LI ++ +L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDL- 567
Query: 148 LEVLLELKR---YETCVEVLRR 166
L + L + +E + ++R
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
Score = 36.8 bits (84), Expect = 0.018
Identities = 37/250 (14%), Positives = 80/250 (32%), Gaps = 36/250 (14%)
Query: 255 QEHYEAYAVQFKELVYLDIAEALIQ---EHYEAYAVQ-VLVLLVSSEKY----NQPGVWK 306
H+ + + Y DI ++++ VQ + ++S E+
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 307 QLAETY----EKSECLSGVVVSTVDTGSGSWWFQSMSSAMCSTVLIKDS-TEHLDQLSLD 361
+ K E + V V + + + + ++ E D+L D
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 362 ATTVLYKTGHIPHAYQLFRVL--MLKNLDS--KVVLNLMN--------LITLRSSDIRIV 409
++ ++ Q + L L L V+++ + L S ++
Sbjct: 123 --NQVFAKYNVSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 410 RN------TLRTFQSKPNNLGL--NVMYANNCNLTSNVNVQGEEVKKLDVLSNELFVNML 461
+ L+ S L + ++Y + N TS + ++ + EL +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 462 TSSYSTCLLV 471
+ Y CLLV
Sbjct: 240 SKPYENCLLV 249
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil,
transcription; NMR {Enterobacteria phage T4} SCOP:
a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Length = 90
Score = 30.4 bits (68), Expect = 0.33
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 51 ILIQRGLSKDTILDNRARRLRLCDEIGLKNRG--FVLAGYQRYLKNITPDSDPQTILDLS 108
ILI+ ++ I++NRA + +EIG+ + G +++ + +T + I + +
Sbjct: 17 ILIKFS--REDIVENRANFIAFLNEIGVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFN 74
Query: 109 TRAAHVYH 116
VY
Sbjct: 75 EGFEGVYR 82
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats,
helix-turn-helix, cytoplasm, DNA damage, DNA repair,
SOS response, DNA binding protein; 1.80A {Escherichia
coli}
Length = 159
Score = 30.0 bits (68), Expect = 1.0
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 33 DESRYILSRVRT-------PKKIEHILIQRGLSKDTI 62
D+SR++ + + P +I L Q+G+S++
Sbjct: 63 DDSRFVARFIASRSRKGYGPARIRQELNQKGISREAT 99
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 30.7 bits (69), Expect = 1.3
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 273 IAEALIQEHYEAY-------AVQVLVLLVSS--------EKYNQPGVWKQLAETY 312
+ L+ AVQVL+ + + E+ N+P VW QLA+
Sbjct: 10 HSSGLVPRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQ 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 100 DPQTILDLSTRAAHVYHTARNFPQAASSLAI 130
+ Q + L +Y A +A +LAI
Sbjct: 18 EKQALKKLQASL-KLY--A---DDSAPALAI 42
Score = 29.1 bits (64), Expect = 1.9
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 89 QRYLKNITPDSDPQTILDLSTRAA 112
Q LK DS P L+ +A
Sbjct: 26 QASLKLYADDSAPA----LAIKAT 45
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter,
transferrin R serum, metal transport; HET: P6G; 2.10A
{Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A*
3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Length = 698
Score = 29.9 bits (66), Expect = 2.1
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 331 GSWWFQSMSSAMCSTVLIKDSTEHLDQLSLDATTVLYKTGHIPHAYQLFR 380
S FQ SS +L KDS ++ +Y A + R
Sbjct: 297 KSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLR 346
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous
recombination, tandem repeats, three-helix bundle,
cytoplasm; 1.50A {Xanthomonas campestris PV}
Length = 162
Score = 28.8 bits (65), Expect = 2.2
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 33 DESRYILSRVRT-------PKKIEHILIQRGLSKDTI 62
D+ R+ S VR P I L GL D +
Sbjct: 65 DDVRFAASVVRNRASSGYGPLHIRAELGTHGLDSDAV 101
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl
isomerase, catalytic triad, serine protease, leishmania
pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP:
c.46.1.2 c.46.1.2 d.26.1.3
Length = 373
Score = 29.7 bits (67), Expect = 2.4
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 16/53 (30%)
Query: 337 SMSSAMCSTVLIKDST----EHLDQLS-LDATTVL---------YKTGHIPHA 375
+ + V + +HL + +D L Y H+ A
Sbjct: 5 AAAPKHPGKVFL--DPSEVADHLAEYRIVDCRYSLKIKDHGSIQYAKEHVKSA 55
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 27.7 bits (62), Expect = 3.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 304 VWKQLAETYEKSECLSGVVVSTVD 327
+++L Y KSE VV++ VD
Sbjct: 46 KYEELGALYAKSEFKDRVVIAKVD 69
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K,
structural genomi protein structure initiative; 2.35A
{Lactobacillus reuteri}
Length = 221
Score = 27.7 bits (62), Expect = 8.0
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 33 DESRYILSRVRT--------PKKIEHILIQRGLSKDTI 62
D+ Y S VRT P I L Q+G+ + I
Sbjct: 109 DDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDI 146
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 27.3 bits (61), Expect = 9.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 33 DESRYILSRVRT--------PKKIEHILIQRGLSKDTI 62
++ Y S VRT PK I+ L ++G+ +
Sbjct: 66 NDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIA 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.378
Gapped
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,396,591
Number of extensions: 446802
Number of successful extensions: 1005
Number of sequences better than 10.0: 1
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 32
Length of query: 497
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 399
Effective length of database: 3,965,535
Effective search space: 1582248465
Effective search space used: 1582248465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)