BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7458
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VQY|A Chain A, Crystal Structure Of A Nipsnap Family Protein (Atu5224)
From Agrobacterium Tumefaciens Str. C58 At 2.40 A
Resolution
pdb|1VQY|B Chain B, Crystal Structure Of A Nipsnap Family Protein (Atu5224)
From Agrobacterium Tumefaciens Str. C58 At 2.40 A
Resolution
pdb|1VQY|C Chain C, Crystal Structure Of A Nipsnap Family Protein (Atu5224)
From Agrobacterium Tumefaciens Str. C58 At 2.40 A
Resolution
pdb|1VQY|D Chain D, Crystal Structure Of A Nipsnap Family Protein (Atu5224)
From Agrobacterium Tumefaciens Str. C58 At 2.40 A
Resolution
pdb|1VQY|E Chain E, Crystal Structure Of A Nipsnap Family Protein (Atu5224)
From Agrobacterium Tumefaciens Str. C58 At 2.40 A
Resolution
pdb|1VQY|F Chain F, Crystal Structure Of A Nipsnap Family Protein (Atu5224)
From Agrobacterium Tumefaciens Str. C58 At 2.40 A
Resolution
pdb|1VQY|G Chain G, Crystal Structure Of A Nipsnap Family Protein (Atu5224)
From Agrobacterium Tumefaciens Str. C58 At 2.40 A
Resolution
pdb|1VQY|H Chain H, Crystal Structure Of A Nipsnap Family Protein (Atu5224)
From Agrobacterium Tumefaciens Str. C58 At 2.40 A
Resolution
Length = 116
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 76 FFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSF 135
F + +G L V H W Y L R E R W + LI ++RILLPT F
Sbjct: 53 FVTDIGPLSQVIHXWGYASLDDRAERRGKLAEDQRWQAFIPRLSVLIESSENRILLPTDF 112
Query: 136 SPTQ 139
SP +
Sbjct: 113 SPLR 116
>pdb|2AP6|A Chain A, X-Ray Crystal Structure Of Protein Atu4242 From
Agrobacterium Tumefaciens. Northeast Strucutral Genomics
Consortium Target Atr43.
pdb|2AP6|B Chain B, X-Ray Crystal Structure Of Protein Atu4242 From
Agrobacterium Tumefaciens. Northeast Strucutral Genomics
Consortium Target Atr43.
pdb|2AP6|C Chain C, X-Ray Crystal Structure Of Protein Atu4242 From
Agrobacterium Tumefaciens. Northeast Strucutral Genomics
Consortium Target Atr43.
pdb|2AP6|D Chain D, X-Ray Crystal Structure Of Protein Atu4242 From
Agrobacterium Tumefaciens. Northeast Strucutral Genomics
Consortium Target Atr43.
pdb|2AP6|E Chain E, X-Ray Crystal Structure Of Protein Atu4242 From
Agrobacterium Tumefaciens. Northeast Strucutral Genomics
Consortium Target Atr43.
pdb|2AP6|F Chain F, X-Ray Crystal Structure Of Protein Atu4242 From
Agrobacterium Tumefaciens. Northeast Strucutral Genomics
Consortium Target Atr43.
pdb|2AP6|G Chain G, X-Ray Crystal Structure Of Protein Atu4242 From
Agrobacterium Tumefaciens. Northeast Strucutral Genomics
Consortium Target Atr43.
pdb|2AP6|H Chain H, X-Ray Crystal Structure Of Protein Atu4242 From
Agrobacterium Tumefaciens. Northeast Strucutral Genomics
Consortium Target Atr43
Length = 112
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 40 YEVRSYSLKPGTMIEWGNNWA-RAITHRRNNDEAFAG-FFSQVGRLYNVHHFWCYKDLAS 97
YE+R+Y LK G + + I ++++ G FFS++G + + H W + L
Sbjct: 3 YEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDD 62
Query: 98 RKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137
R E R P W + LI +++I P FSP
Sbjct: 63 RAERRARLXADPRWLSFLPKIRDLIEVAENKIXKPARFSP 102
>pdb|1VQS|A Chain A, Crystal Structure Of A Nipsnap Family Protein With Unknown
Function (Atu4242) From Agrobacterium Tumefaciens Str.
C58 At 1.50 A Resolution
pdb|1VQS|B Chain B, Crystal Structure Of A Nipsnap Family Protein With Unknown
Function (Atu4242) From Agrobacterium Tumefaciens Str.
C58 At 1.50 A Resolution
pdb|1VQS|C Chain C, Crystal Structure Of A Nipsnap Family Protein With Unknown
Function (Atu4242) From Agrobacterium Tumefaciens Str.
C58 At 1.50 A Resolution
pdb|1VQS|D Chain D, Crystal Structure Of A Nipsnap Family Protein With Unknown
Function (Atu4242) From Agrobacterium Tumefaciens Str.
C58 At 1.50 A Resolution
pdb|1VQS|E Chain E, Crystal Structure Of A Nipsnap Family Protein With Unknown
Function (Atu4242) From Agrobacterium Tumefaciens Str.
C58 At 1.50 A Resolution
Length = 116
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 40 YEVRSYSLKPGTMIEWGNNWA-RAITHRRNNDEAFAG-FFSQVGRLYNVHHFWCYKDLAS 97
YE+R+Y LK G + + I ++++ G FFS++G + + H W + L
Sbjct: 15 YEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDD 74
Query: 98 RKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137
R E R P W + LI +++I P FSP
Sbjct: 75 RAERRARLXADPRWLSFLPKIRDLIEVAENKIXKPARFSP 114
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 29.3 bits (64), Expect = 0.71, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 24 FSYWPAIETRSGAPNIYE-------VRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGF 76
SYW +++ I V Y K ++W + I H+ ++ A AGF
Sbjct: 266 LSYWASVKNPKAIKKIVTAVSSSSLVEEYLSKYNIQVDWTKVGSVDIAHKVADENALAGF 325
Query: 77 FSQVGRLYNVHHF 89
G +Y H +
Sbjct: 326 EENGGFMYPPHQY 338
>pdb|1SIU|A Chain A, Kumamolisin-As E78h Mutant
Length = 364
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 93 KDLASRKETRESAWRSPGWDECVAYTVPL-IREMQSRILLPTSFSP 137
D+A+R + ++ PGWD C P+ +R +Q+ LLP++ P
Sbjct: 322 NDIANRAQIYQA---GPGWDPCTGLGSPIGVRLLQA--LLPSASQP 362
>pdb|1ZVJ|A Chain A, Structure Of Kumamolisin-As Mutant, D164n
Length = 364
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 93 KDLASRKETRESAWRSPGWDECVAYTVPL-IREMQSRILLPTSFSP 137
D+A+R + ++ PGWD C P+ +R +Q+ LLP++ P
Sbjct: 322 NDIANRAQIYQA---GPGWDPCTGLGSPIGVRLLQA--LLPSASQP 362
>pdb|1SIO|A Chain A, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SIO|B Chain B, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SIO|C Chain C, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SN7|A Chain A, Kumamolisin-As, Apoenzyme
Length = 364
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 93 KDLASRKETRESAWRSPGWDECVAYTVPL-IREMQSRILLPTSFSP 137
D+A+R + ++ PGWD C P+ +R +Q+ LLP++ P
Sbjct: 322 NDIANRAQIYQA---GPGWDPCTGLGSPIGVRLLQA--LLPSASQP 362
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 3 QVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARA 62
+VLH EQ + + S + L AF+ + A IY ++Y+L P T ++ + +A
Sbjct: 97 EVLHFEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLP-TYLQLSKKYYKA 155
Query: 63 ITHRRN 68
+ N
Sbjct: 156 EPQKVN 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,462,524
Number of Sequences: 62578
Number of extensions: 169499
Number of successful extensions: 317
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 10
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)