Query psy7458
Match_columns 139
No_of_seqs 102 out of 619
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 18:49:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2883|consensus 100.0 1.3E-32 2.9E-37 203.7 5.6 138 1-139 116-253 (253)
2 PF07978 NIPSNAP: NIPSNAP ; I 100.0 1.9E-30 4E-35 173.8 9.8 98 40-137 1-102 (102)
3 KOG2883|consensus 99.8 1.2E-20 2.7E-25 140.2 7.2 108 30-137 31-143 (253)
4 PF03992 ABM: Antibiotic biosy 97.5 0.0024 5.2E-08 39.4 9.5 74 38-115 1-76 (78)
5 PRK10486 autoinducer-2 (AI-2) 96.0 0.096 2.1E-06 34.4 8.5 80 41-124 4-84 (96)
6 COG1359 Uncharacterized conser 95.5 0.39 8.5E-06 31.7 10.1 91 38-132 3-95 (100)
7 COG3254 Uncharacterized conser 92.0 0.76 1.7E-05 30.9 5.9 71 44-116 7-82 (105)
8 COG2329 Uncharacterized enzyme 88.4 5.7 0.00012 26.5 8.5 64 38-101 2-68 (105)
9 PF05336 DUF718: Domain of unk 87.9 3.8 8.2E-05 27.4 6.8 68 44-116 6-81 (106)
10 PF07237 DUF1428: Protein of u 87.4 6.8 0.00015 26.4 8.6 70 45-114 8-94 (103)
11 PF07045 DUF1330: Protein of u 86.8 3.2 7E-05 25.0 5.5 57 52-114 4-64 (65)
12 PRK13315 heme-degrading monoox 82.8 6.3 0.00014 26.6 5.9 60 38-100 1-65 (107)
13 PRK13313 heme-degrading monoox 81.4 8.2 0.00018 26.1 6.1 61 38-101 1-66 (108)
14 PRK13314 heme-degrading monoox 81.2 7.7 0.00017 26.2 5.9 61 38-101 1-66 (107)
15 PF05977 MFS_3: Transmembrane 75.8 28 0.00061 29.7 9.1 71 36-106 422-492 (524)
16 PRK13312 heme-degrading monoox 73.7 19 0.00042 24.3 6.1 61 38-101 2-67 (107)
17 COG5507 Uncharacterized conser 71.9 19 0.00041 24.2 5.6 66 50-115 14-96 (117)
18 TIGR03792 uncharacterized cyan 71.8 25 0.00055 23.0 7.4 62 39-101 1-65 (90)
19 PRK13316 heme-degrading monoox 70.2 33 0.00072 23.7 7.0 60 38-100 1-73 (121)
20 PRK09565 hypothetical protein; 53.2 49 0.0011 28.5 6.1 67 45-115 449-516 (533)
21 TIGR02625 YiiL_rotase L-rhamno 51.2 71 0.0015 21.3 5.9 67 44-116 5-79 (102)
22 PF02728 Cu_amine_oxidN3: Copp 46.4 12 0.00025 24.6 1.2 40 94-135 4-43 (101)
23 TIGR02118 conserved hypothetic 42.2 93 0.002 20.0 8.0 64 48-116 9-80 (100)
24 PF08557 Lipid_DES: Sphingolip 40.3 23 0.00049 19.6 1.5 28 88-115 6-33 (39)
25 PF04673 Cyclase_polyket: Poly 39.0 94 0.002 20.7 4.6 70 47-123 1-74 (97)
26 cd05841 BS69_related The PWWP 34.5 33 0.00072 22.0 1.9 25 21-46 17-41 (83)
27 COG3224 Uncharacterized protei 33.6 2E+02 0.0044 21.5 7.6 63 38-100 10-74 (195)
28 PF04486 SchA_CurD: SchA/CurD 32.9 1.6E+02 0.0035 20.1 6.7 53 43-97 6-62 (114)
29 PF07682 SOR: Sulphur oxygenas 29.4 2.8E+02 0.0061 22.1 6.5 45 37-81 157-202 (303)
30 COG5470 Uncharacterized conser 27.0 1.9E+02 0.0042 19.1 6.2 61 49-115 15-79 (96)
31 COG1379 PHP family phosphoeste 24.0 1.3E+02 0.0028 24.7 3.9 29 77-105 74-102 (403)
32 PF08248 Tryp_FSAP: Tryptophyl 22.0 49 0.0011 13.4 0.6 6 25-30 3-8 (12)
No 1
>KOG2883|consensus
Probab=99.97 E-value=1.3e-32 Score=203.69 Aligned_cols=138 Identities=64% Similarity=1.114 Sum_probs=133.4
Q ss_pred ChHHhHHHhcCcccccccceecccCCCCcccCCCCCCceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeee
Q psy7458 1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQV 80 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~ 80 (139)
||+|+..+.-+|+.++.++++..|++|+.+.++.. +.|||||+|.++||++-+|.++|+++|..|.+..+.||.|++++
T Consensus 116 e~le~~~~rs~~l~sr~nq~ll~fs~W~epe~r~g-~nvYELrsy~lkPGtmieWgn~waRaI~yr~~~neavggFfsqi 194 (253)
T KOG2883|consen 116 EYLEQSIERSKALISRKNQELLYFSYWSEPEKRPG-ENVYELRSYQLKPGTMIEWGNAWARAINYRVENNEAVGGFFSQI 194 (253)
T ss_pred HHHHHHhHHHHHHHhhhhhheeeeeccCCcCCCCC-CCceeeeeEecCCCchhHHHHHHHHHHHHHHhcchhhhhHHHhh
Confidence 68999999999999999999999999999988888 89999999999999999999999999999988889999999999
Q ss_pred CCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhcccccceeeeeeeeeecCCCCCC
Q psy7458 81 GRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ 139 (139)
Q Consensus 81 G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~~~~~i~~~~s~ll~p~~fsp~~ 139 (139)
|.++.|+|||.|+|++.|++.|++...+|.|-+.+....|+|.+|+|.||.|+.|||++
T Consensus 195 GeLy~VhhlWay~slqsR~~tR~aaw~kpgwda~V~yTVpli~~mqsriliP~k~Splq 253 (253)
T KOG2883|consen 195 GELYVVHHLWAYKSLQSRADTRHAAWRKPGWDAAVAYTVPLIREMQSRILIPTKFSPLQ 253 (253)
T ss_pred hheeEEEEEEecCccchhhhhhhhhhcCCchhHHHHHhhHHHHHhhhheecccccCCCC
Confidence 99999999999999999999999999999999999989999999999999999999985
No 2
>PF07978 NIPSNAP: NIPSNAP ; InterPro: IPR012577 Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family, which have putative roles in vesicular transport []. This domain is often found in duplicate.; PDB: 1VQY_D 2AP6_H.
Probab=99.97 E-value=1.9e-30 Score=173.75 Aligned_cols=98 Identities=42% Similarity=0.782 Sum_probs=84.1
Q ss_pred EEEEEEEecCCCHHHHHHHHHH-HhHhhh-hcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhc
Q psy7458 40 YEVRSYSLKPGTMIEWGNNWAR-AITHRR-NNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAY 117 (139)
Q Consensus 40 yElRtY~lkpg~~~~~~~~~~~-~l~~~~-~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~ 117 (139)
||||+|+++||++++|++.|++ .++... .++++||+|.+++|++|+|+|||.|+|+++|++.++++++||+|++....
T Consensus 1 yElr~Y~l~pg~~~~~~~~~~~~~~~~~~~~g~~lvG~~~~~~G~~~~~~~l~~y~~~~~r~~~~~a~~~d~~w~~~~~~ 80 (102)
T PF07978_consen 1 YELRTYTLKPGKMDEFLELFEEALIPRQKKHGGKLVGYWVTEVGPLNQVVHLWSYDDLAAREEAREALYADPEWKAYVAE 80 (102)
T ss_dssp EEEEEEEESTT-HHHHHHHHHHCCHHHHHHHH-EEEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHhCCceeEEEEeccCCCceEEEEEEcCCHHHHHHHHHHHHcCchHHHHHHh
Confidence 8999999999999999999998 455544 45799999999999999999999999999999999999999999887766
Q ss_pred cccc--ceeeeeeeeeecCCCC
Q psy7458 118 TVPL--IREMQSRILLPTSFSP 137 (139)
Q Consensus 118 ~~~~--i~~~~s~ll~p~~fsp 137 (139)
..++ +.++++++|.|++|||
T Consensus 81 ~~~~~~i~~~~~~~l~p~~~sp 102 (102)
T PF07978_consen 81 ARPLPLIRSQESRLLRPTPFSP 102 (102)
T ss_dssp CCTT--EEEEEEEEEEE-TT-S
T ss_pred ccccCcEEEEEEEEeEECCCCC
Confidence 6566 9999999999999998
No 3
>KOG2883|consensus
Probab=99.83 E-value=1.2e-20 Score=140.16 Aligned_cols=108 Identities=21% Similarity=0.286 Sum_probs=95.8
Q ss_pred ccCCCCCCceEEEEEEEecCCCHHHHHHHHHHHhHhhh--hc-CceeEEEEeeeC-CcceEEEEEEcCC-HHHHHHHHHH
Q psy7458 30 IETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRR--NN-DEAFAGFFSQVG-RLYNVHHFWCYKD-LASRKETRES 104 (139)
Q Consensus 30 ~~~~~~~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~--~~-~~lvG~w~te~G-~~n~v~~lw~y~~-~~~r~~~r~~ 104 (139)
+.+.+.++-+||+|||.+||+.+++|++.+++.++... +. ++|||.|++++| +.||++|||+|++ ++++++++++
T Consensus 31 lls~ke~~~~Ye~~thnvkP~~m~Ay~~~~kk~~~~~~~~~~~ceLVgsWt~~yG~~~dqa~HlWry~ggy~~~~e~~~~ 110 (253)
T KOG2883|consen 31 LLSRKEDGTFYEFRTHNVKPSNMDAYLENLKKNIHLINEKNYSCELVGSWTVEYGGRTDQAFHLWRYDGGYEHRDEVRKA 110 (253)
T ss_pred hcccccccceeeeeecccChhhHHHHHHHHHHHHHhhhccCCCceeEEEEEEeeccccceeEEEEeecCCcchHHHHHHH
Confidence 34444457899999999999999999999999877653 33 699999999999 6999999999997 9999999999
Q ss_pred hccCCChhhhhhcccccceeeeeeeeeecCCCC
Q psy7458 105 AWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137 (139)
Q Consensus 105 ~~~~~~w~~~~~~~~~~i~~~~s~ll~p~~fsp 137 (139)
+.+|++|.++......++.+.+++++..++||+
T Consensus 111 l~n~ke~le~~~~rs~~l~sr~nq~ll~fs~W~ 143 (253)
T KOG2883|consen 111 LANDKEYLEQSIERSKALISRKNQELLYFSYWS 143 (253)
T ss_pred HhcCHHHHHHHhHHHHHHHhhhhhheeeeeccC
Confidence 999999999887777888899999999999876
No 4
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=97.51 E-value=0.0024 Score=39.41 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=55.0
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHHHhH-hhhhcCceeEEEEee-eCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWARAIT-HRRNNDEAFAGFFSQ-VGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV 115 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~~l~-~~~~~~~lvG~w~te-~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~ 115 (139)
||.-+.+++++||+.++|++.+.+... ...+....+++.... .++.+.++.+-.|+|.++..+. .++|.++++.
T Consensus 1 Mi~v~~~~~v~~~~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~W~s~~a~~~~----~~s~~~~~~~ 76 (78)
T PF03992_consen 1 MITVIVKFKVKPGKEEEFLAAFQELAEATLRKEPGCLSYELYRSLDDPNRYVIVERWESEEAFQAH----FKSPEFKAFQ 76 (78)
T ss_dssp EEEEEEEEEEETTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSSTTEEEEEEEESSHHHHHHH----HTSHHHHHHH
T ss_pred CEEEEEEEEeCcchHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCEEEEEEEECCHHHHHHH----HcCHHHHHHH
Confidence 678889999999999999999999665 423444555555444 5667899999999998776555 4666666643
No 5
>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional
Probab=96.03 E-value=0.096 Score=34.40 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=58.3
Q ss_pred EEEEEEecCCCHHHHHHHHHHHhH-hhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhccc
Q psy7458 41 EVRSYSLKPGTMIEWGNNWARAIT-HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTV 119 (139)
Q Consensus 41 ElRtY~lkpg~~~~~~~~~~~~l~-~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~~~ 119 (139)
-+-..++|||+.++|.+...+.+. .+..-|.+.-.......+.|.++-+=.|.|.++.++. .+.|-.+++.....
T Consensus 4 ~ia~~~~kpg~~~~~~~~l~~~~~~sr~EpGcl~y~~~~~~~~p~~~~~~E~w~d~~Al~~H----~~tph~k~f~~~~~ 79 (96)
T PRK10486 4 TLVEINVKEDKVDEFIEVFRQNHLGSIQEPGNLRFDVLQDPEVPTRFYIYEAYKDEAAVAFH----KTTPHYKTCVEKLE 79 (96)
T ss_pred EEEEEEECcchHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCEEEEEEEeCCHHHHHHH----hcCHHHHHHHHHHH
Confidence 345678999999999999988554 4443444443334444557889988899999998877 58888888887766
Q ss_pred cccee
Q psy7458 120 PLIRE 124 (139)
Q Consensus 120 ~~i~~ 124 (139)
+++.+
T Consensus 80 ~ll~~ 84 (96)
T PRK10486 80 PLMTG 84 (96)
T ss_pred HHHhC
Confidence 66554
No 6
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.39 Score=31.69 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=66.4
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHHHh-HhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWARAI-THRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA 116 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~~l-~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~ 116 (139)
+|.-+-+...+||+.++|.+.+...+ +.+..-|-+.--++...+..+.++-+=.|.|.++.+.. .+.|..+++.+
T Consensus 3 ~i~~~~~~~~~~~~~~~~~~~~~~lv~~sr~EeGcl~Y~l~~d~~~~~~~~~~E~w~d~~A~~~H----~~s~h~~~~~~ 78 (100)
T COG1359 3 MVIVLARFKPKPGHREEFLDLLAELVEASRAEEGCLSYELHRDPDNPGRFVLIEVWEDEAALDAH----LQSPHFQAFVA 78 (100)
T ss_pred EEEEEEEEEeCcchHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCCEEEEEEEECCHHHHHHH----hCCHHHHHHHH
Confidence 45555667788888999999999854 45654455555555555567888888889999888887 48899999888
Q ss_pred ccccccee-eeeeeeee
Q psy7458 117 YTVPLIRE-MQSRILLP 132 (139)
Q Consensus 117 ~~~~~i~~-~~s~ll~p 132 (139)
+..+++.. .....+.+
T Consensus 79 ~~~~l~~~~~~i~~~~~ 95 (100)
T COG1359 79 ALPPLLAGPPEIRVLEP 95 (100)
T ss_pred hChHhhcCCcEEEEEee
Confidence 88887766 44444444
No 7
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=0.76 Score=30.95 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=46.4
Q ss_pred EEEecCCCHHHHHHHHHH----HhHhhhhcC-ceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458 44 SYSLKPGTMIEWGNNWAR----AITHRRNND-EAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA 116 (139)
Q Consensus 44 tY~lkpg~~~~~~~~~~~----~l~~~~~~~-~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~ 116 (139)
+-.|+||+.++|.++-.+ .+...+..| +.-..| ..|+.|.+.-.|.|.|.++.-+..++--.+..|.++..
T Consensus 7 ~m~l~p~~~eEYk~rH~~vWPE~~a~lk~agi~nYSIf--Lde~~n~lFgy~E~~d~~a~m~~~a~~ev~qkWw~~m~ 82 (105)
T COG3254 7 VMKLKPGKHEEYKRRHDAVWPELLALLKEAGIRNYSIF--LDEEENLLFGYWEYEDFEADMAKMAETEVCQKWWKYMA 82 (105)
T ss_pred EEEeCcchHHHHHHhhccccHHHHHHHHHcCCceeEEE--ecCCcccEEEEEEEcChHHHHHHHhCCHHHHHHHHHhh
Confidence 457899999999987655 344333333 554444 45667999999999976665544443333447777653
No 8
>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]
Probab=88.36 E-value=5.7 Score=26.51 Aligned_cols=64 Identities=8% Similarity=-0.093 Sum_probs=44.9
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeee---CCcceEEEEEEcCCHHHHHHH
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQV---GRLYNVHHFWCYKDLASRKET 101 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~---G~~n~v~~lw~y~~~~~r~~~ 101 (139)
|++.+-.+.+++|.-++|.+.|.+..+.-...-..+|.-.... -+.++++-+-.++|.++-.+=
T Consensus 2 ~~v~~~~~~v~~g~~~~fe~~f~~~~~~~~~~~Gf~~~~llr~~~~~~~~~~~vvt~WeS~eaf~~W 68 (105)
T COG2329 2 MAVVFNRLAVKEGAEEEFEERFANRAGLLEEMPGFIGFELLRPKTVEDPDEYVVVTRWESEEAFKAW 68 (105)
T ss_pred eEEEEEEEecCCCcHHHHHHHHHHHHhhhhcCCCceEEEEeecCccCCCceEEEEEEECCHHHHHhH
Confidence 6888999999999999999999986544322224444443322 235788889999998765543
No 9
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=87.86 E-value=3.8 Score=27.44 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=43.7
Q ss_pred EEEecCCCHHHHHHHHH----HHhHhhhhcC-ceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCC---Chhhhh
Q psy7458 44 SYSLKPGTMIEWGNNWA----RAITHRRNND-EAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSP---GWDECV 115 (139)
Q Consensus 44 tY~lkpg~~~~~~~~~~----~~l~~~~~~~-~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~---~w~~~~ 115 (139)
+..|+||+..+|.+.-. +.+..-+..| .---.|.. |+.++++++..++|++ +..+++.++| +|.+..
T Consensus 6 ~~~L~p~~~~eY~~~H~~vWPEv~~~l~~~Gi~~ysIf~~--g~~~~LF~~~E~~~~~---~~~~~l~~~p~~~~W~~~m 80 (106)
T PF05336_consen 6 TLKLKPGLIEEYKRRHAEVWPEVLAALREAGIRNYSIFRD--GDTGRLFMYMETDDFD---ADMAALAADPVVQRWWAYM 80 (106)
T ss_dssp EEEB-TTGHHHHHHCCCT--HHHHHHHHHCTEEEEEEEEE--TTTTEEEEEEEECT-C---HHHHHGGGSHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHhccCHHHHHHHHHCCCeEEEEEEe--CCCCEEEEEEEecChh---hHHHHccCChHHHHHHHHH
Confidence 45678999999988543 3333322333 55555544 7778999999999933 4445667776 677765
Q ss_pred h
Q psy7458 116 A 116 (139)
Q Consensus 116 ~ 116 (139)
.
T Consensus 81 ~ 81 (106)
T PF05336_consen 81 A 81 (106)
T ss_dssp C
T ss_pred H
Confidence 4
No 10
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=87.41 E-value=6.8 Score=26.35 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=51.5
Q ss_pred EEecCCCHHHHHHHHHHHhHhhhhcC--ceeEEEEeee--CCc------------ce-EEEEEEcCCHHHHHHHHHHhcc
Q psy7458 45 YSLKPGTMIEWGNNWARAITHRRNND--EAFAGFFSQV--GRL------------YN-VHHFWCYKDLASRKETRESAWR 107 (139)
Q Consensus 45 Y~lkpg~~~~~~~~~~~~l~~~~~~~--~lvG~w~te~--G~~------------n~-v~~lw~y~~~~~r~~~r~~~~~ 107 (139)
--+...+.++|.+.-+.+-+..+.|| +.+-+|-.++ |.. .+ |+--..|+|-++|++.+++.++
T Consensus 8 ~~VP~~nk~aY~~~A~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m~ 87 (103)
T PF07237_consen 8 LPVPTANKDAYRAMAEKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKMMA 87 (103)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHHHC
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhhc
Confidence 34556678889888777777666665 8888887754 321 23 4455689999999999999999
Q ss_pred CCChhhh
Q psy7458 108 SPGWDEC 114 (139)
Q Consensus 108 ~~~w~~~ 114 (139)
||.++..
T Consensus 88 DPrm~~~ 94 (103)
T PF07237_consen 88 DPRMQEM 94 (103)
T ss_dssp SHHHHHT
T ss_pred CcCcCCC
Confidence 9998873
No 11
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=86.83 E-value=3.2 Score=25.05 Aligned_cols=57 Identities=11% Similarity=0.076 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhHhhhhcCceeEE---EEeeeC-CcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458 52 MIEWGNNWARAITHRRNNDEAFAG---FFSQVG-RLYNVHHFWCYKDLASRKETRESAWRSPGWDEC 114 (139)
Q Consensus 52 ~~~~~~~~~~~l~~~~~~~~lvG~---w~te~G-~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~ 114 (139)
+.+|.+.....+. +..|++|.. ..+..| .....+.|.+|+|.++-.+- ++||+.++.
T Consensus 4 ~~~Y~~~~~~~l~--~~GG~~l~~~~~~~~leG~~~~~~~viieFPs~~aa~~~----~~speYq~~ 64 (65)
T PF07045_consen 4 YQEYREAVPPILE--KYGGRVLARGGEPEVLEGDWDPDRVVIIEFPSMEAAKAW----YNSPEYQAL 64 (65)
T ss_dssp HHHHHHHHHHHHH--HTT-EEEEECEEEEEEEST-SSSEEEEEEESSHHHHHHH----HCSHHHHHH
T ss_pred HHHHHHHHHHHHH--HcCCEEEEECCceeEEecCCCCCeEEEEECCCHHHHHHH----HCCHhHHhh
Confidence 4455554444332 234576644 233457 46688899999999887655 577777653
No 12
>PRK13315 heme-degrading monooxygenase IsdG; Provisional
Probab=82.84 E-value=6.3 Score=26.61 Aligned_cols=60 Identities=5% Similarity=0.029 Sum_probs=38.1
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHH--HhHhhhhcCceeEE--EEeeeCC-cceEEEEEEcCCHHHHHH
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWAR--AITHRRNNDEAFAG--FFSQVGR-LYNVHHFWCYKDLASRKE 100 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~--~l~~~~~~~~lvG~--w~te~G~-~n~v~~lw~y~~~~~r~~ 100 (139)
|++-+..++++||.-++|.+.|.+ .+... -..+++ +...-++ .+.++.+-.++|.++-++
T Consensus 1 M~Vv~Nr~~V~~g~~~~fe~rf~r~~~le~~---pGFv~~~lLr~~~~~~~~~~~v~T~Wes~eaF~a 65 (107)
T PRK13315 1 MIVVTNRITVKKGFAAKMAPRFTKGGPLEEL---EGFHKVEVWLIDNDDEYDEMYVNMWWETEEDFEA 65 (107)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHccCCcccCC---CCeEEEEEeccCCCCCCceEEEEEEECCHHHHHH
Confidence 688899999999999999999865 23211 133332 2222222 345656778888777644
No 13
>PRK13313 heme-degrading monooxygenase IsdI; Provisional
Probab=81.36 E-value=8.2 Score=26.15 Aligned_cols=61 Identities=10% Similarity=-0.080 Sum_probs=39.5
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHH--HhHhhhhcCceeEE--EEeee-CCcceEEEEEEcCCHHHHHHH
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWAR--AITHRRNNDEAFAG--FFSQV-GRLYNVHHFWCYKDLASRKET 101 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~--~l~~~~~~~~lvG~--w~te~-G~~n~v~~lw~y~~~~~r~~~ 101 (139)
|++.+...+++||.-+++.+.|.+ .|...+ ..+++ +.... .+.+.++.+-.++|.++-++=
T Consensus 1 M~v~~Nri~V~~G~~~~~~~rF~~r~~ie~~p---GF~~~~vLr~~~~~~~~~~~V~T~Wesee~F~~W 66 (108)
T PRK13313 1 MFMAENRLQLQKGSAEETIERFYNRQGIETIE---GFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNW 66 (108)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHcccCCcccCC---CeEEEEEecCCCCCCceEEEEEEEECCHHHHHHH
Confidence 688899999999999999999965 332221 22222 12221 234567778888877766543
No 14
>PRK13314 heme-degrading monooxygenase IsdG; Provisional
Probab=81.23 E-value=7.7 Score=26.20 Aligned_cols=61 Identities=7% Similarity=-0.074 Sum_probs=39.9
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHH--HhHhhhhcCceeEEE--Eeee-CCcceEEEEEEcCCHHHHHHH
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWAR--AITHRRNNDEAFAGF--FSQV-GRLYNVHHFWCYKDLASRKET 101 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~--~l~~~~~~~~lvG~w--~te~-G~~n~v~~lw~y~~~~~r~~~ 101 (139)
|++.+...++++|.-+++.+.|.+ .+... -..+++- .... .+.+.++.+-.++|.++-++=
T Consensus 1 M~vv~Nri~V~~G~~~~~~erF~r~~~ie~~---pGF~~~~vLr~~~~~~~~~y~v~T~Wes~eaF~aW 66 (107)
T PRK13314 1 MIIVTNTAKITKGNGHKLIDRFNKVGKVETM---PGFLGLEVLLTQNTVDYDEVTISTRWNAKEDFQGW 66 (107)
T ss_pred CEEEEEEEEeCCCchHHHHHHhccCCccccC---CCcEEEEEecCCCCCCCceEEEEEEECCHHHHHHH
Confidence 688899999999999999999954 23222 1333322 1211 134677778888887776543
No 15
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=75.77 E-value=28 Score=29.74 Aligned_cols=71 Identities=10% Similarity=0.063 Sum_probs=51.9
Q ss_pred CCceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhc
Q psy7458 36 APNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAW 106 (139)
Q Consensus 36 ~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~ 106 (139)
.+.|.-.-.|++.|++.++|++..++.=..|...|-.--..+-+.++.++++.-...++-.|+-+.+++.-
T Consensus 422 ~gpv~v~~~y~i~~~~~~~f~~~~~~~~~~r~r~ga~~w~~~~d~~~~~~~~e~~~~~~w~~~~r~~~r~t 492 (524)
T PF05977_consen 422 SGPVMVTIEYRIAPEDAAAFLAAMRELRRIRRRDGARRWGLFRDLEDPGRWVERFHVESWLEHLRQHERVT 492 (524)
T ss_pred CCCEEEEEEEEECcccHHHHHHHHHHHHHHHhhcChhhceeeeccCCCCeEEEEEeCCCHHHHHHHhccCC
Confidence 46788888999999999999999888555554445332223446677889999999999777766655543
No 16
>PRK13312 heme-degrading monooxygenase IsdG; Provisional
Probab=73.74 E-value=19 Score=24.32 Aligned_cols=61 Identities=10% Similarity=-0.016 Sum_probs=39.7
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHH--HhHhhhhcCceeEE--EEeeeC-CcceEEEEEEcCCHHHHHHH
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWAR--AITHRRNNDEAFAG--FFSQVG-RLYNVHHFWCYKDLASRKET 101 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~--~l~~~~~~~~lvG~--w~te~G-~~n~v~~lw~y~~~~~r~~~ 101 (139)
.++.+...+++||.-++|.+.|.+ .|...+ ..+++ +....+ +.+.++.+-.++|.++-++=
T Consensus 2 ~~v~~Nri~V~~G~~~~~e~rF~~r~~ie~~p---GF~~~~vLr~~~~~~~d~y~v~T~WeseeaFeaW 67 (107)
T PRK13312 2 KFMAENRLTLTKGTAKDIIERFYTRHGIETLE---GFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDW 67 (107)
T ss_pred cEEEEEEEEeCCCcHHHHHHHHcccCCcccCC---CeEEEEEeecCCCCCceEEEEEEEECCHHHHHHH
Confidence 367889999999999999999965 332221 22222 222222 24678888888887776543
No 17
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=71.86 E-value=19 Score=24.20 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHhHhhhhcC--ceeEEEEeee--CCc------------ceEEEEE-EcCCHHHHHHHHHHhccCCChh
Q psy7458 50 GTMIEWGNNWARAITHRRNND--EAFAGFFSQV--GRL------------YNVHHFW-CYKDLASRKETRESAWRSPGWD 112 (139)
Q Consensus 50 g~~~~~~~~~~~~l~~~~~~~--~lvG~w~te~--G~~------------n~v~~lw-~y~~~~~r~~~r~~~~~~~~w~ 112 (139)
.+.++|-++-..+-+.-+.+| +.|-+|-.++ |.+ ..|+.-| .|+|-+.|++..+..++||..+
T Consensus 14 a~~daYrk~a~~A~~v~kE~Gal~~VEc~~dDVP~Gk~T~F~rAVkA~ddE~VvFsW~~Y~skq~rDA~~~kmMsDPRl~ 93 (117)
T COG5507 14 AKKDAYRKLAAKAAPVWKEFGALRYVECWADDVPYGKLTDFPRAVKAKDDEEVVFSWIEYPSKQVRDAANAKMMSDPRLK 93 (117)
T ss_pred ccHHHHHHHHHhhhHHHHHhCchhhhhhcccCCCCCcccchhhhhhccCCcEEEEEEEEcCchhHHHHHHHHhhcCcccc
Confidence 445666665555555555554 5566665543 221 3455555 6999999999999999999987
Q ss_pred hhh
Q psy7458 113 ECV 115 (139)
Q Consensus 113 ~~~ 115 (139)
+..
T Consensus 94 ~~~ 96 (117)
T COG5507 94 EDG 96 (117)
T ss_pred ccc
Confidence 754
No 18
>TIGR03792 uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown.
Probab=71.76 E-value=25 Score=22.99 Aligned_cols=62 Identities=5% Similarity=-0.022 Sum_probs=41.8
Q ss_pred eEEEEEEEecCCCHHHHHHHHHHHh-HhhhhcCceeE--EEEeeeCCcceEEEEEEcCCHHHHHHH
Q psy7458 39 IYEVRSYSLKPGTMIEWGNNWARAI-THRRNNDEAFA--GFFSQVGRLYNVHHFWCYKDLASRKET 101 (139)
Q Consensus 39 iyElRtY~lkpg~~~~~~~~~~~~l-~~~~~~~~lvG--~w~te~G~~n~v~~lw~y~~~~~r~~~ 101 (139)
+.|+=...++||...+|+++.+.+. +.....-..+| .|.+.- ...+++-|..++|.++..+.
T Consensus 1 viE~l~~~V~p~~~~~f~~a~~~~w~~~l~~~~GFlg~ev~~~~e-~pee~~llI~WeS~E~WK~i 65 (90)
T TIGR03792 1 VIEWLRFKVPPEDREAFLEADEEIWTPWLAKQPGFLGKEVWWDPE-KPEEGVLLIRWESREQWKAI 65 (90)
T ss_pred CeeEEEEeeChhhHHHHHHHHHHHHHHHHHhCCCccceEEEecCC-CCCEEEEEEEEcCHHHHhcC
Confidence 4678889999999999999988863 22221112222 333322 24799999999999887654
No 19
>PRK13316 heme-degrading monooxygenase IsdG; Provisional
Probab=70.16 E-value=33 Score=23.72 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=38.7
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHHH---------hHhhhhcCceeEEEEeeeC----CcceEEEEEEcCCHHHHHH
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWARA---------ITHRRNNDEAFAGFFSQVG----RLYNVHHFWCYKDLASRKE 100 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~~---------l~~~~~~~~lvG~w~te~G----~~n~v~~lw~y~~~~~r~~ 100 (139)
|++.+.+.++++|..+++.+.|.+. +... -..+++-.-..+ +...++.+-.++|.++-.+
T Consensus 1 M~Iv~Nri~V~~g~a~~~~~rF~~r~~~g~~~~~ie~~---pGFv~f~lL~~~~~~~~~~e~~V~T~WeSeeaF~a 73 (121)
T PRK13316 1 MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEV---EGFLGFELWHSKPEDKDYEEVVVTSKWESEEAQRN 73 (121)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHhccCcccccccchhcC---CCceEEEEeeccCCCCCceEEEEEEEECCHHHHHH
Confidence 7888999999999999999999762 2211 244444432212 2344566667777666544
No 20
>PRK09565 hypothetical protein; Reviewed
Probab=53.24 E-value=49 Score=28.46 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=45.0
Q ss_pred EEecCCCHHHHHHHHHHHhHhhhh-cCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458 45 YSLKPGTMIEWGNNWARAITHRRN-NDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV 115 (139)
Q Consensus 45 Y~lkpg~~~~~~~~~~~~l~~~~~-~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~ 115 (139)
|++|||.-++|.+.|.+++...+. .|..-+-....+-+.|...-.=.++|.++-.+ |..+.++++.+
T Consensus 449 Y~Vk~~h~~eF~~~F~~V~~~L~~~~G~~~~~L~~~v~d~~~~~I~seW~~~e~~~~----F~~S~~f~etv 516 (533)
T PRK09565 449 YTVKPDYREDFVETFDTVGGLLAEMDGHRETDLLVNRDDENDMFIASQWDSKEDAMA----FFRSDAFRETV 516 (533)
T ss_pred EEecCchHHHHHHHHHHHHHHHhhcCCcccceeeeecCCchhcEEeeeccCHHHHHH----HHhhhHHHHHH
Confidence 899999999999999997665442 24333333445556677777777888766544 45555555543
No 21
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=51.19 E-value=71 Score=21.25 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=42.5
Q ss_pred EEEecCCCHHHHHHHHHHHhH----h-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCC---Chhhhh
Q psy7458 44 SYSLKPGTMIEWGNNWARAIT----H-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSP---GWDECV 115 (139)
Q Consensus 44 tY~lkpg~~~~~~~~~~~~l~----~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~---~w~~~~ 115 (139)
+..|+||.+++|.+.-.+.-| . +..+.+--..|.. |+.|+++.+..++|..+.+ ++.++| +|.++.
T Consensus 5 ~~~l~p~~~~eY~~~H~~vWPEv~~~L~~~Gi~~ysIfl~--~~~~~LF~~~E~~d~~~~~----~~a~~~~~~~W~~~M 78 (102)
T TIGR02625 5 VMYVNPDAHEEYQKRHNEIWPELKEVLKSHGAHNYSIFLD--KQRNLLFAYVEIEDEERWN----AIAETDICQKWWKYM 78 (102)
T ss_pred EEEeCHHHHHHHHHHHHccCHHHHHHHHHCCCeEEEEEEE--CCCCeEEEEEEECchhcHH----HhhCCHHHHHHHHHH
Confidence 457899999999987665333 2 2233355556644 3346999999988755543 344444 777765
Q ss_pred h
Q psy7458 116 A 116 (139)
Q Consensus 116 ~ 116 (139)
.
T Consensus 79 ~ 79 (102)
T TIGR02625 79 A 79 (102)
T ss_pred H
Confidence 4
No 22
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=46.40 E-value=12 Score=24.62 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHhccCCChhhhhhcccccceeeeeeeeeecCC
Q psy7458 94 DLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSF 135 (139)
Q Consensus 94 ~~~~r~~~r~~~~~~~~w~~~~~~~~~~i~~~~s~ll~p~~f 135 (139)
+.++..++.+...+||.|++.+++.+ +.+.....+.|.+.
T Consensus 4 ~~~E~~~~~~~~~~~p~~~~al~~rg--i~d~~~v~~~pw~~ 43 (101)
T PF02728_consen 4 TLEEFAEAEEIVKADPEFQAALKKRG--ITDMDEVCCDPWSY 43 (101)
T ss_dssp -HHHHHHHHHHHHTGHHHHHHHHHTT--CSCGGGEEEEEEE-
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHhC--CCCcCeEEEeeecc
Confidence 46778888888889999999887665 44455555555443
No 23
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=42.18 E-value=93 Score=20.00 Aligned_cols=64 Identities=9% Similarity=0.158 Sum_probs=37.8
Q ss_pred cCCCHHHHHHHHHH-HhHhhhhcCceeEEEEee-----eCC--cceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458 48 KPGTMIEWGNNWAR-AITHRRNNDEAFAGFFSQ-----VGR--LYNVHHFWCYKDLASRKETRESAWRSPGWDECVA 116 (139)
Q Consensus 48 kpg~~~~~~~~~~~-~l~~~~~~~~lvG~w~te-----~G~--~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~ 116 (139)
+|...++|.+.|.+ +++.-+..-.+.++-.+- -|. -+.+. -..|+|.++..+. .++|++++..+
T Consensus 9 ~p~~~e~F~~yy~~~H~pL~~~~pg~~~y~~~~~~~~~~~~~~~d~i~-el~Fds~e~~~~a----~~sp~~~~~~~ 80 (100)
T TIGR02118 9 QPEDGAAFDHHYRDTHVPLAQKLPGLRRYAVDKIVSGLPGSSPYYGMC-ELYFDSIEDFQAA----FDSPEGKAAAA 80 (100)
T ss_pred CCCCHHHHHHHHHhccHHHHHhCcCceEEEEecccCCCCCCCCeeEEE-EEEECCHHHHHHH----HcCHHHHHHHH
Confidence 45557899998887 666544332355554432 122 22343 3458899988775 47788776543
No 24
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=40.34 E-value=23 Score=19.59 Aligned_cols=28 Identities=18% Similarity=0.346 Sum_probs=24.7
Q ss_pred EEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458 88 HFWCYKDLASRKETRESAWRSPGWDECV 115 (139)
Q Consensus 88 ~lw~y~~~~~r~~~r~~~~~~~~w~~~~ 115 (139)
..|.|.+..++.+.+.-+.+.|+-++..
T Consensus 6 F~W~~~~ePH~~RRk~IL~k~PeIk~L~ 33 (39)
T PF08557_consen 6 FEWVYTDEPHASRRKEILKKHPEIKKLM 33 (39)
T ss_pred cEEeCCCCccHHHHHHHHHhChHHHHHh
Confidence 4799999999999999999999987754
No 25
>PF04673 Cyclase_polyket: Polyketide synthesis cyclase; InterPro: IPR006765 Aromatic polyketides are assembled by a type II (iterative) polyketide synthase in bacteria. Iterative type II polyketide synthases produce polyketide chains of variable but defined length from a specific starter unit and a number of extender units. They also specify the initial regiospecific folding and cyclization pattern of nascent polyketides either through the action of a cyclase (CYC) subunit or through the combined action of site-specific ketoreductase and CYC subunits. Additional CYCs and other modifications may be necessary to produce linear aromatic polyketides. This family represents a number of cyclases involved in polyketide synthesis in a number of actinobacterial species. TcmI (P39890 from SWISSPROT) catalyses an aromatic rearrangement in the biosynthetic pathaway of tetracenomycin C from Streptomyces coelicolor. The protein is a homodimer where each subunit forms a beta-alpha-beta fold belonging to the ferrodoxin fold superfamily []. Four strands of antiparallel sheets and a layer of alpha helices create a cavity which was proposed to be the active site. This structure shows strong topological similarity to a polyketide monoxygenase (Q53908 from SWISSPROT) from S. coelicolor which functions in the actinorhodin biosynthesic pathway []. It was suggested, therefore, that this fold is well suited to serve as a framework for rearrangements and chemical modification of polyaromatic substrates.; GO: 0030639 polyketide biosynthetic process; PDB: 1TUW_A.
Probab=39.00 E-value=94 Score=20.67 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=39.7
Q ss_pred ecCCCHHHHHHHHHHH----hHhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhcccccc
Q psy7458 47 LKPGTMIEWGNNWARA----ITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLI 122 (139)
Q Consensus 47 lkpg~~~~~~~~~~~~----l~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~~~~~i 122 (139)
++||..++.-++|.+. +|... .+.+-.-=..++ -.+||-. . .++-.+.-.+...+|++++....+.++|
T Consensus 1 M~p~~~~~VA~~FaesDateLP~~~---Gv~rR~Lf~~~d--LY~HLiE-~-~~d~~~~i~~ar~~P~F~~is~~L~~yi 73 (97)
T PF04673_consen 1 MDPGSAEDVARLFAESDATELPHLM---GVRRRSLFSFHD--LYFHLIE-A-DDDPGEAIAKARGHPEFVRISERLSPYI 73 (97)
T ss_dssp E-GGGHHHHHHHHHHHTTSSHHHHH---T--EEEEEEETT--EEEEEEE-E-SS--HHHHHHTTS-GGGHHHHHHHHTTE
T ss_pred CCCccHHHHHHHHHhccCccCchhh---CccceeEeeeCC--EEEEEEe-c-cCCchHHHHHHhcCcHHHHHHHHHHhhC
Confidence 3678888888888772 44221 111111113344 7899999 3 3444444455679999999877666666
Q ss_pred e
Q psy7458 123 R 123 (139)
Q Consensus 123 ~ 123 (139)
.
T Consensus 74 ~ 74 (97)
T PF04673_consen 74 S 74 (97)
T ss_dssp E
T ss_pred C
Confidence 4
No 26
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=34.49 E-value=33 Score=22.04 Aligned_cols=25 Identities=40% Similarity=0.716 Sum_probs=16.9
Q ss_pred ecccCCCCcccCCCCCCceEEEEEEE
Q psy7458 21 LLAFSYWPAIETRSGAPNIYEVRSYS 46 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~iyElRtY~ 46 (139)
+.++|.||+-..... ...|.+|.|-
T Consensus 17 ~kGyp~WPAkV~~~~-~~~~~V~FFG 41 (83)
T cd05841 17 LKGFPYWPAKVMRVE-DNQVDVRFFG 41 (83)
T ss_pred CCCCCCCCEEEeecC-CCeEEEEEcC
Confidence 568899998444433 4677788774
No 27
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.64 E-value=2e+02 Score=21.45 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=39.2
Q ss_pred ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEE--EEeeeCCcceEEEEEEcCCHHHHHH
Q psy7458 38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAG--FFSQVGRLYNVHHFWCYKDLASRKE 100 (139)
Q Consensus 38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~--w~te~G~~n~v~~lw~y~~~~~r~~ 100 (139)
.+--+-+.+++||+-..|++--++....-+++-.-+|. -...-|+--+.+-+-+|++++...+
T Consensus 10 ~vs~~ia~rvkPg~ea~~law~~ei~~l~~~~PG~igS~ii~p~~G~~~e~~~ifRFD~~enl~a 74 (195)
T COG3224 10 PVSLLIARRVKPGHEAIFLAWQEEIKALARKYPGYIGSGIIRPQAGDRFEYETIFRFDNLENLAA 74 (195)
T ss_pred ceEEEEEeecCCCcHHHHHHHHHHHHHHHHhCCCccccCccccCCCCceeEEEEEEecCHHHHHH
Confidence 34456778999999999988666643322222111121 1234465447888999998887654
No 28
>PF04486 SchA_CurD: SchA/CurD like domain; InterPro: IPR007575 Proteins having this domain have been identified mainly in species of the Streptomyces genus. Two of them are known to be part of gene clusters involved in the synthesis of polyketide-based spore pigments, homologous to clusters involved in the synthesis of polyketide antibiotics. Their function is unknown, but they has been speculated to contain a NAD(P) binding site []. Many of these proteins contain two copies of the domain.
Probab=32.85 E-value=1.6e+02 Score=20.11 Aligned_cols=53 Identities=17% Similarity=0.058 Sum_probs=34.5
Q ss_pred EEEEecCCCHHHHHHHHHH-HhHh-hh-hcCceeEEEEeeeCCcceEEEEEEcC-CHHH
Q psy7458 43 RSYSLKPGTMIEWGNNWAR-AITH-RR-NNDEAFAGFFSQVGRLYNVHHFWCYK-DLAS 97 (139)
Q Consensus 43 RtY~lkpg~~~~~~~~~~~-~l~~-~~-~~~~lvG~w~te~G~~n~v~~lw~y~-~~~~ 97 (139)
-+|.+|||+-.+.-+++.. ..+. .. ..+.++|.=.=.-| |.||=+..++ ++.+
T Consensus 6 LtypvkpG~g~~vA~llA~~~~~~a~~d~~~~l~~TtvF~~d--d~VVR~vdv~Gdl~a 62 (114)
T PF04486_consen 6 LTYPVKPGSGDAVARLLASYQDPAAAGDPATRLLRTTVFQRD--DRVVRVVDVEGDLDA 62 (114)
T ss_pred EEeecCCCcHHHHHHHHccCCChhhccCCCCceEEEEEEEEC--CEEEEEEEecCCHHH
Confidence 4899999998888887773 2222 11 23577765222334 6999999998 4433
No 29
>PF07682 SOR: Sulphur oxygenase reductase; InterPro: IPR011661 The crystal structure of the sulphur oxygenase/reductase (SOR) of the thermo-acidophilic archaeon Acidianus ambivalens has been determined to 1.7-A resolution []. Twenty-four monomers form a large hollow sphere enclosing a positively charged nanocompartment. Apolar channels provide access for linear sulphur species. A cysteine persulphide and a low-potential mononuclear non-heme iron site ligated by a 2-His-1-carboxylate facial triad in a pocket of each subunit constitute the active sites, accessible from the inside of the sphere. The iron is likely the site of both sulphur oxidation and sulphur reduction. At 85 degrees C in vitro, elemental sulphur is oxidised to sulphite, thiosulphate and hydrogen sulphide with no external cofactors needed. The proposed equation is: 4S + O2 + 4 H2O ---> 2 HSO3- + 2 H2S + 2 H+.; PDB: 3BXV_A 2YAV_B 2YAW_F 2CB2_E 2YAX_C.
Probab=29.39 E-value=2.8e+02 Score=22.10 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=33.2
Q ss_pred CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeC
Q psy7458 37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVG 81 (139)
Q Consensus 37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G 81 (139)
.++.-+-.++++||.-.+|.+.--+.+...++--..+|+..- ++|
T Consensus 157 qRvva~g~H~V~~G~Ek~FE~g~i~tle~~k~apGflG~MILKqiG 202 (303)
T PF07682_consen 157 QRVVALGEHTVKPGREKDFEEGAIETLEMFKKAPGFLGYMILKQIG 202 (303)
T ss_dssp SSEEEEEEEEE-TT-HHHHHHHHHHHHHHHCCSTTEEEEEEEEEEE
T ss_pred ceEEEEeeeEecCCcHHHHHHHHHHHHHHHHhCcchhhHHHHHHhC
Confidence 579999999999999999999877777765554477777754 454
No 30
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=1.9e+02 Score=19.13 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhHhhhhcCcee---EEEEeeeCCcc-eEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458 49 PGTMIEWGNNWARAITHRRNNDEAF---AGFFSQVGRLY-NVHHFWCYKDLASRKETRESAWRSPGWDECV 115 (139)
Q Consensus 49 pg~~~~~~~~~~~~l~~~~~~~~lv---G~w~te~G~~n-~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~ 115 (139)
|...++|...-..++. +.+|+.+ |--.+.-|+.+ +-..+..|+|+++-.+ .+++|+.+.+.
T Consensus 15 ~e~y~~Y~~~~~~a~~--~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~----~y~SpeYq~a~ 79 (96)
T COG5470 15 PEQYKDYVSKAKPAIE--KFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARD----CYNSPEYQAAA 79 (96)
T ss_pred HHHHHHHHHHhHHHHH--HhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHH----HhcCHHHHHHH
Confidence 5455555554444443 2234544 33344557644 6777899999987654 47999999975
No 31
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=24.02 E-value=1.3e+02 Score=24.72 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.2
Q ss_pred EeeeCCcceEEEEEEcCCHHHHHHHHHHh
Q psy7458 77 FSQVGRLYNVHHFWCYKDLASRKETRESA 105 (139)
Q Consensus 77 ~te~G~~n~v~~lw~y~~~~~r~~~r~~~ 105 (139)
++++.+.++|.||.=.++.++.++.+..+
T Consensus 74 t~evEd~~rVHhLlilPSl~~~~El~~~l 102 (403)
T COG1379 74 TAEVEDSRRVHHLLILPSLSAAEELSEWL 102 (403)
T ss_pred EEeeccCCceeEEEEcCcHHHHHHHHHHH
Confidence 56888899999999999999999987655
No 32
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=21.97 E-value=49 Score=13.35 Aligned_cols=6 Identities=33% Similarity=1.387 Sum_probs=4.1
Q ss_pred CCCCcc
Q psy7458 25 SYWPAI 30 (139)
Q Consensus 25 ~~~~~~ 30 (139)
||||++
T Consensus 3 pfw~pp 8 (12)
T PF08248_consen 3 PFWPPP 8 (12)
T ss_pred ccCCCC
Confidence 678764
Done!