RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7458
(139 letters)
>1vqy_A Hypothetical protein AGR_PAT_315; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI; 2.40A {Agrobacterium tumefaciens str} SCOP:
d.58.4.13
Length = 116
Score = 116 bits (293), Expect = 3e-35
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 39 IYEVRSYSLKPGTMIEWGNNWARAITH--RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLA 96
I E R Y ++ G M E+ F + +G L V H W Y L
Sbjct: 14 IVEERIYRIRGGKMQEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIHMWGYASLD 73
Query: 97 SRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ 139
R E R W + LI ++RILLPT FSP +
Sbjct: 74 DRAERRGKLAEDQRWQAFIPRLSVLIESSENRILLPTDFSPLR 116
>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str}
SCOP: d.58.4.13 PDB: 2ap6_A
Length = 116
Score = 115 bits (290), Expect = 1e-34
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Query: 33 RSGAPNIYEVRSYSLKPGTMIEWGNNWARAITH--RRNNDEAFAGFFSQVGRLYNVHHFW 90
YE+R+Y LK G + + + + E FFS++G + + H W
Sbjct: 8 HHHHHMFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIW 67
Query: 91 CYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137
+ L R E R P W + LI +++I+ P FSP
Sbjct: 68 AFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSP 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.3
Identities = 4/18 (22%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 122 IREMQSRILL--PTSFSP 137
++++Q+ + L S +P
Sbjct: 22 LKKLQASLKLYADDS-AP 38
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis
complex; 2.25A {Mus musculus}
Length = 571
Score = 27.2 bits (59), Expect = 2.1
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 11 QTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSY---------SLKPGTMIEWGNNWAR 61
+++ L L+A + A + +++Y + + +
Sbjct: 422 KSLEKSELIQLVAVTQKTAERSYREHIEQQ-IQTYQRSWLKVTDYIAEKNLPVFQPGVKL 480
Query: 62 AITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESA 105
R+ E F GF + L + W D R + R++
Sbjct: 481 RDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQ 524
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis,
alpha/beta- hydrolases, catalytic triade, hydrolase;
1.8A {Bacillus subtilis} PDB: 2cbg_A*
Length = 244
Score = 26.3 bits (58), Expect = 3.8
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 90 WCYKDLASRKETRES--AWRSPGWDECVAYTVPLIREMQ 126
+KDLA + + + + D + V I E+Q
Sbjct: 36 IYFKDLALQLNHKAAVYGFHFIEEDSRIEQYVSRITEIQ 74
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase;
ssgcid, inorganic phosphatase; 1.90A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Length = 197
Score = 25.4 bits (56), Expect = 6.2
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 87 HHFWCYKDLASRKETRESAWRSP 109
H F YKDL K + W
Sbjct: 158 HFFEHYKDLEPGKWVKIGDWGDE 180
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Length = 199
Score = 25.0 bits (55), Expect = 8.0
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 87 HHFWCYKDLASRKETRESAWRSP 109
H F YK L K W+
Sbjct: 158 HFFSFYKKLEKDKFVSVGCWQDA 180
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism,
hydrolase; HET: MSE; 2.00A {Coxiella burnetii}
Length = 178
Score = 25.0 bits (55), Expect = 8.7
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 87 HHFWCYKDLASRKETRESAWRSP 109
H F YKDL K + W
Sbjct: 138 HFFERYKDLEPNKWAKVKGWEDK 160
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 25.4 bits (56), Expect = 9.5
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 67 RNNDEAFAGFFSQVGRLYNV 86
R F ++Q +N
Sbjct: 438 RELSATFDDHYTQPRLFFNS 457
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase);
thermostability, magnesium, hydrolase; 2.70A {Sulfolobus
acidocaldarius} SCOP: b.40.5.1
Length = 173
Score = 24.9 bits (55), Expect = 9.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 87 HHFWCYKDLASRKETRESAWRSP 109
H F YK+L K + S W S
Sbjct: 133 HFFEHYKELEPGKYVKISGWGSA 155
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori}
PDB: 1ygz_A 2bqy_A
Length = 173
Score = 24.9 bits (55), Expect = 10.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 87 HHFWCYKDLASRKETRESAWRSP 109
H F YKDL K + + +
Sbjct: 135 HFFETYKDLEPNKWVKVKGFENK 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.438
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,196,852
Number of extensions: 116527
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 21
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)