RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7458
         (139 letters)



>d1vqsa_ d.58.4.13 (A:) Hypothetical protein Atu4242 {Agrobacterium
           tumefaciens [TaxId: 358]}
          Length = 110

 Score =  107 bits (268), Expect = 6e-32
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 39  IYEVRSYSLKPGTMIEWGNNWARAITH--RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLA 96
            YE+R+Y LK G +  +            + +  E    FFS++G +  + H W +  L 
Sbjct: 8   FYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLD 67

Query: 97  SRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137
            R E R      P W   +     LI   +++I+ P  FSP
Sbjct: 68  DRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSP 108


>d1vqya1 d.58.4.13 (A:1-104) Hypothetical protein Atu5224
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 104

 Score =  104 bits (260), Expect = 9e-31
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 39  IYEVRSYSLKPGTMIEWGNNWARAIT--HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLA 96
           I E R Y ++ G M E+                      F + +G L  V H W Y  L 
Sbjct: 2   IVEERIYRIRGGKMQEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIHMWGYASLD 61

Query: 97  SRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ 139
            R E R        W   +     LI   ++RILLPT FSP +
Sbjct: 62  DRAERRGKLAEDQRWQAFIPRLSVLIESSENRILLPTDFSPLR 104


>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 551

 Score = 27.2 bits (60), Expect = 0.72
 Identities = 5/35 (14%), Positives = 10/35 (28%)

Query: 71  EAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESA 105
           E F  F      L +    +   D + +   +   
Sbjct: 475 EKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEI 509


>g1pya.1 d.155.1.1 (A:,B:) Histidine decarboxylase {Lactobacillus
           sp., strain 30a [TaxId: 1591]}
          Length = 310

 Score = 24.5 bits (53), Expect = 6.6
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 19/98 (19%)

Query: 43  RSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETR 102
           R +   PG+ I   N   + +T  R  ++A      + G+ Y V   W    ++  K+  
Sbjct: 140 RRHYPAPGSFIVCAN---KGVTAERPKNDADM----KPGQGYGV---WSAIAISFAKDPT 189

Query: 103 ESA---------WRSPGWDECVAYTVPLIREMQSRILL 131
           + +         W +P  DE + Y     + M   I  
Sbjct: 190 KDSSMFVEDAGVWETPNEDELLEYLEGRRKAMAKSIAE 227


>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Synechococcus sp., strain pcc
          6301 [TaxId: 1131]}
          Length = 109

 Score = 23.7 bits (51), Expect = 7.0
 Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 15 SRHLQYLLAFSYWPAIETRS-GAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAF 73
          +  ++Y++   + P IE      P  +    + L                  R    + +
Sbjct: 26 AAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCY 85

Query: 74 AGF 76
             
Sbjct: 86 IRV 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 550,149
Number of extensions: 23843
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 8
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)