BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy746
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + LL L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + LL L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + LL L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + LL L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 417 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 475
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 476 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 526
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 417 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 475
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 476 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 526
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 68 GDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHL---LKLGYKHV 124
G DL A+ +QR RD+G+PGYN +R++ GL ++ +L V+ N+ L L Y
Sbjct: 302 GLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--RNLKLARKLMEQYGTP 359
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFW 166
++ID+++GG E GP +I QF + + GDRFW
Sbjct: 360 NNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFW 401
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 68 GDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHL---LKLGYKHV 124
G DL A+ +QR RD+G+PGYN +R++ GL ++ +L V+ N+ L L Y
Sbjct: 302 GLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--RNLKLARKLMEQYGTP 359
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFW 166
++ID+++GG E GP +I QF + + GDRFW
Sbjct: 360 NNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFW 401
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 68 GDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHL---LKLGYKHV 124
G DL A+ +QR RD+G+PGYN +R++ GL ++ +L V+ N+ L L Y
Sbjct: 302 GLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--RNLKLARKLMEQYGTP 359
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFW 166
++ID+++GG E GP +I QF + + GDRFW
Sbjct: 360 NNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFW 401
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 60 PPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKL 119
P Q P DL A+ I R R+ +P YNEFR+ + P+ +E+L++ E I +L
Sbjct: 480 PNGQARPDHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTE--DEEAIEVLDD 537
Query: 120 GYK-HVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFS 168
Y V+++DL VG E + T Y+ R DRF+ S
Sbjct: 538 VYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTS 587
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 420 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 477
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A ++ G+ KP +F
Sbjct: 478 PALLVEKPRPDAIFGETMVELGAPFSFKGLMGNPICSPQYWKPSTF 523
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 422 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 479
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 480 PALLVEKPRPDAIFGETMVELGAPFSLKVLMGNPICSPQYWKPSTF 525
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 416 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 473
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 474 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 439 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 496
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 497 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 542
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 421 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 478
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 479 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 524
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 433 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 490
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 491 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 536
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 420 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 477
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 478 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 523
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 416 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 473
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 474 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 416 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 473
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 474 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 416 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 473
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 474 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 416 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 473
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 474 PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLF 130
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L+
Sbjct: 421 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELY 478
Query: 131 VGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 176
+E P D++FG T + A + G+ KP +F
Sbjct: 479 PALLVEKPHPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 524
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 420 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 477
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 478 EKCHPNSIFG 487
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 452 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 509
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 510 EKCHPNSIFG 519
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 420 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 477
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 478 EKCHPNSIFG 487
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 420 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 477
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 478 EKCHPNSIFG 487
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 452 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 509
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 510 EKCHPNSIFG 519
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 421 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 478
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 479 EKCHPNSIFG 488
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 421 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 478
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 479 EKCHPNSIFG 488
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 421 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 478
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 479 EKCHPNSIFG 488
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 432 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 489
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 490 EKCHPNSIFG 499
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 428 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 485
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 486 EKCHPNSIFG 495
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 135
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 428 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 485
Query: 136 ENPLHDSLFG 145
E +S+FG
Sbjct: 486 EKCHPNSIFG 495
>pdb|2QEZ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|E Chain E, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|F Chain F, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
Length = 455
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 10/42 (23%)
Query: 66 PHGDDLTAIGIQRQRDYGMPGYNE---FRKYAGLKPVKSFEE 104
PHGDD+ +Y GY+E R+ GLKP+K F++
Sbjct: 396 PHGDDVXL-------NYQTTGYHETATLRELFGLKPIKEFDQ 430
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With
Calpastatin Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With
Calpastatin Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 47 EDFNINNKLKTNHPPFQYDPHGDDL--TAIGIQRQRDYGMPGYNEFR 91
E NI NK+ T HP + D G D + + + G G+ EF+
Sbjct: 24 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFK 70
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 47 EDFNINNKLKTNHPPFQYDPHGDDL--TAIGIQRQRDYGMPGYNEFR 91
E NI NK+ T HP + D G D + + + G G+ EF+
Sbjct: 751 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFK 797
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 102 FEELSDVIGPENI-HLLKLGYKHVDDIDL 129
F L++VIG ++ H + G +H+DD+DL
Sbjct: 1155 FRSLNEVIGRTDLLHQVSRGAEHLDDLDL 1183
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 102 FEELSDVIGPENI-HLLKLGYKHVDDIDL 129
F L++VIG ++ H + G +H+DD+DL
Sbjct: 1155 FRSLNEVIGRTDLLHQVSRGAEHLDDLDL 1183
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 47 EDFNINNKLKTNHPPFQYDPHGDDL--TAIGIQRQRDYGMPGYNEFR 91
E NI NK+ T HP + D G D + + + G G+ EF+
Sbjct: 24 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFK 70
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 47 EDFNINNKLKTNHPPFQYDPHGDDL--TAIGIQRQRDYGMPGYNEFR 91
E NI NK+ T HP + D G D + + + G G+ EF+
Sbjct: 35 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFK 81
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 47 EDFNINNKLKTNHPPFQYDPHGDDL--TAIGIQRQRDYGMPGYNEFR 91
E NI NK+ T HP + D G D + + + G G+ EF+
Sbjct: 35 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFK 81
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 47 EDFNINNKLKTNHPPFQYDPHGDDL--TAIGIQRQRDYGMPGYNEFR 91
E NI NK+ T HP + D G D + + + G G+ EF+
Sbjct: 35 ELMNILNKVVTRHPDLKTDGFGIDTSRSMVAVMDSDTTGKLGFEEFK 81
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 47 EDFNINNKLKTNHPPFQYDPHGDDL--TAIGIQRQRDYGMPGYNEFR 91
E NI NK+ T HP + D G D + + + G G+ EF+
Sbjct: 31 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFK 77
>pdb|2HV2|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|C Chain C, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|D Chain D, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|E Chain E, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|F Chain F, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
Length = 400
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 11 IDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPF-EDWWEDFNINNKLKTNHPPFQYDPHG 68
I V+W +++ D LE Q+ E WW D+ +N K N+ Y G
Sbjct: 156 IKRVSWADGKEVIK---DVYLENQRAHSGGVIRETWWLDYTLNRASKPNNQAIYYSSEG 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.143 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,466,996
Number of Sequences: 62578
Number of extensions: 299429
Number of successful extensions: 535
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 50
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)