Query psy746
Match_columns 178
No_of_seqs 116 out of 848
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:53:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9k_A Lactoperoxidase, LPO; b 100.0 4E-52 1.4E-56 382.2 9.3 162 9-178 372-538 (595)
2 1d2v_C Myeloperoxidase; heme-p 100.0 8.1E-52 2.8E-56 371.4 10.0 162 8-178 244-410 (466)
3 3nt1_A Prostaglandin-endoperox 100.0 7.9E-44 2.7E-48 326.7 9.4 146 8-177 368-520 (587)
4 1q4g_A Prostaglandin G/H synth 100.0 7E-43 2.4E-47 318.9 10.3 148 8-178 368-521 (553)
5 3rfa_A Ribosomal RNA large sub 40.2 23 0.00079 30.6 3.8 43 79-122 32-76 (404)
6 3r8n_R 30S ribosomal protein S 38.7 15 0.0005 23.1 1.7 18 71-88 35-52 (55)
7 2vog_B BCL-2-modifying factor; 34.4 18 0.0006 19.3 1.3 10 151-160 15-24 (27)
8 1dw9_A Cyanate lyase; cyanate 31.4 37 0.0013 25.7 3.2 44 110-156 54-116 (156)
9 3i1m_R 30S ribosomal protein S 29.6 23 0.00079 23.5 1.6 18 71-88 54-71 (75)
10 2ko4_A Mediator of RNA polymer 29.3 29 0.00098 23.5 2.0 28 95-122 31-64 (81)
11 2gbs_A Hypothetical protein RP 25.7 28 0.00096 26.0 1.6 21 154-174 37-59 (145)
12 2yiu_B Cytochrome C1, heme pro 25.2 69 0.0024 26.2 4.0 79 67-151 40-126 (263)
13 2vqe_R 30S ribosomal protein S 24.9 35 0.0012 23.3 1.8 19 70-88 64-82 (88)
14 1zce_A Hypothetical protein AT 23.4 33 0.0011 26.0 1.6 21 154-174 38-60 (155)
No 1
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=4e-52 Score=382.20 Aligned_cols=162 Identities=32% Similarity=0.495 Sum_probs=151.4
Q ss_pred cccchhhhccChhhhh--hhHHHHHHHHhhcccc--CcCCCccchhhhhhhhcCCCCCCCCCCCchHHHHHHHHHHhcCC
Q psy746 9 AQIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQ--PFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGM 84 (178)
Q Consensus 9 ~~~~L~d~~~~p~~l~--~~~d~llrGl~~q~~~--~~d~~~~~~~l~~~lf~~~~~~~~~~~g~DL~alnIqRgRDhGl 84 (178)
+.++|.+.||+|..+. +|+|+++|||++|+++ +.|.++ +++|+++||+... ...|+||+|+||||||||||
T Consensus 372 ~~~~L~~~ff~~~~~~~~~gid~llrGl~~q~a~~~~~d~~~-~~~l~~~Lf~~~~----~~~g~DL~alnIqRgRdhGl 446 (595)
T 3q9k_A 372 AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMV-TSELRNKLFQPTH----KIHGFDLAAINLQRCRDHGM 446 (595)
T ss_dssp CEEEGGGGBTCCHHHHTTTCSHHHHHHHHHSEEECCCTTSCS-CHHHHTCEECTTS----CSEEECHHHHHHHHHHHTTC
T ss_pred CceeHHHHhcChHHhhhccchHHHHHHHhhCcccccCCCccC-CHHHHHHhccCCC----ccccccHHHHHHHHHHHhCC
Confidence 5799999999999776 8999999999999999 889999 9999999998665 42499999999999999999
Q ss_pred ccHHHHHHHhCCCCCCCcccccCCC-CHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q psy746 85 PGYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGD 163 (178)
Q Consensus 85 p~Yn~~R~~cgl~~~~~f~dl~~~~-~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~qF~rl~~gD 163 (178)
|+||+||++|||+++++|+||+..| +++++++|+++|++|||||||||+++|++++|+.+||||+|||++||.|||+||
T Consensus 447 p~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~~l~~lY~~~d~iDl~vG~l~E~~~~g~~~Gptf~~ii~~qf~~lr~gD 526 (595)
T 3q9k_A 447 PGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGD 526 (595)
T ss_dssp CCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTBSSCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHcCCCCCCCHHHHhhhcCcHHHHHHHHHHhCCccccceeecccccccCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999655 688889999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCCC
Q psy746 164 RFWFSVLGKPWSFTE 178 (178)
Q Consensus 164 Rf~ye~~~~p~~Ft~ 178 (178)
||||||+ ++||+
T Consensus 527 Rf~yen~---~~ft~ 538 (595)
T 3q9k_A 527 RFWWENP---GVFTE 538 (595)
T ss_dssp TTCTTSB---TTBCH
T ss_pred CCeecCC---CcCCH
Confidence 9999974 58984
No 2
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=8.1e-52 Score=371.38 Aligned_cols=162 Identities=27% Similarity=0.437 Sum_probs=151.3
Q ss_pred CcccchhhhccChhhhh--hhHHHHHHHHhhcccc--CcCCCccchhhhhhhhcCCCCCCCCCCCchHHHHHHHHHHhcC
Q psy746 8 AAQIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQ--PFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYG 83 (178)
Q Consensus 8 ~~~~~L~d~~~~p~~l~--~~~d~llrGl~~q~~~--~~d~~~~~~~l~~~lf~~~~~~~~~~~g~DL~alnIqRgRDhG 83 (178)
.+.++|.+.||+|..+. +++|+++|||++|+++ +.|..+ +++|+++||+..+ . .++||+|+|||||||||
T Consensus 244 ~~~~~l~~~~f~~~~~~~~~g~d~~lrgl~~q~a~~~~~d~~l-~~~l~~~lf~~~~----~-~~~DL~alnIqRgRDhG 317 (466)
T 1d2v_C 244 NPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIA-VDEIRERLFEQVM----R-IGLDLPALNMQRSRDHG 317 (466)
T ss_dssp CSEEEGGGTTTCHHHHHHTTCHHHHHHHHHHSEEECCBTTBCS-CHHHHTCBTGGGS----S-SCBCHHHHHHHHHHHTT
T ss_pred CCceeHHHHhcChHHHhhccCchHHHHHHhhCccccccCchhh-hHHHHHHhhcccC----c-cchhHHHHHHHHHHHcC
Confidence 45799999999998776 8999999999999998 579999 9999999998765 3 79999999999999999
Q ss_pred CccHHHHHHHhCCCCCCCcccccCCC-CHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHHHHHHhhcC
Q psy746 84 MPGYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFG 162 (178)
Q Consensus 84 lp~Yn~~R~~cgl~~~~~f~dl~~~~-~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~qF~rl~~g 162 (178)
||+||+||++|||++++||+||++.+ +++++++|+++|++|||||||||+++|++++|+.+||||+|||++||.|||+|
T Consensus 318 lp~YN~~R~~~gL~~~~tf~dl~~~~~d~~~~~~L~~lY~~~d~vDL~vG~laE~~~~G~~~Gptf~~ii~~qf~rLr~g 397 (466)
T 1d2v_C 318 LPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDG 397 (466)
T ss_dssp CCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTCSSCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHcCCCCCCCHHHHhhccCCHHHHHHHHHHhCCccccceeecccccccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999655 68999999999999999999999999999999999999999999999999999
Q ss_pred CcceeecCCCCCCCCC
Q psy746 163 DRFWFSVLGKPWSFTE 178 (178)
Q Consensus 163 DRf~ye~~~~p~~Ft~ 178 (178)
||||||| |+.||+
T Consensus 398 DRf~yen---~~~ft~ 410 (466)
T 1d2v_C 398 DRFWWEN---EGVFSM 410 (466)
T ss_dssp CTTCTTS---TTTSCH
T ss_pred CcccccC---CCcccc
Confidence 9999996 568984
No 3
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=100.00 E-value=7.9e-44 Score=326.65 Aligned_cols=146 Identities=23% Similarity=0.332 Sum_probs=131.6
Q ss_pred CcccchhhhccChhhhh-hhHHHHHHHHhhccccCcCCCccchhhhhhhhcCCCCCCCCCCCchHHHHHHHHHHhcCCcc
Q psy746 8 AAQIDMVTWMHRPSIVQ-GYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPG 86 (178)
Q Consensus 8 ~~~~~L~d~~~~p~~l~-~~~d~llrGl~~q~~~~~d~~~~~~~l~~~lf~~~~~~~~~~~g~DL~alnIqRgRDhGlp~ 86 (178)
...++|+++||+|..+. +|+|++++||++|+++++|... + . ...++||+|+|||||||||||+
T Consensus 368 ~~~~~l~~~ff~p~~~~~~gid~llrgl~~q~a~~~~~~~-n----------~-----~~~~~DL~alnIqRGRDhGlp~ 431 (587)
T 3nt1_A 368 DQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGR-N----------V-----PIAVQAVAKASIDQSREMKYQS 431 (587)
T ss_dssp TEEECHHHHTTCTHHHHHHHHHHHHHHHHHSBCBCSSSSS-C----------B-----CGGGHHHHHHHHHHHHHTTCCC
T ss_pred CCcccHHHHhcCccccchhhHHHHHHHHHHhhhhcccccc-c----------C-----chHHHHHHHHHHHHHHhhCCCc
Confidence 34689999999998887 9999999999999999986432 1 0 2278999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcccccCCCCHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHHH------HHHhh
Q psy746 87 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQ------FYRWK 160 (178)
Q Consensus 87 Yn~~R~~cgl~~~~~f~dl~~~~~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~q------F~rl~ 160 (178)
||+||++|||+++++|+||++ +++++++|+++|++|||||||||+++|++++|+++||||+|| +.| |.++|
T Consensus 432 YN~~R~~cgL~~~~tf~dl~~--~~~~~~~L~~lY~~~ddIDL~vGglaE~~~pG~~vGpTf~ci-~~qf~l~~~~~~~r 508 (587)
T 3nt1_A 432 LNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVEL-GAPFSLKGLMGNPI 508 (587)
T ss_dssp HHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHHHHHSCCSTTCSSCHHHHHH-HHHHHHHHHHTSGG
T ss_pred HHHHHHHcCCCCCCCHHHhCC--CHHHHHHHHHHhCCHhheeeecccccccCCCCccHHHHHHHH-HHHHHHHHHhcCcc
Confidence 999999999999999999998 799999999999999999999999999999999999999999 666 48999
Q ss_pred cCCcceeecCCCCCCCC
Q psy746 161 FGDRFWFSVLGKPWSFT 177 (178)
Q Consensus 161 ~gDRf~ye~~~~p~~Ft 177 (178)
.|||||+ |++||
T Consensus 509 ~gDrfw~-----~~~Ft 520 (587)
T 3nt1_A 509 CSPQYWK-----PSTFG 520 (587)
T ss_dssp GSTTTSS-----GGGGT
T ss_pred cCCcccC-----cCccC
Confidence 9999994 45666
No 4
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=7e-43 Score=318.93 Aligned_cols=148 Identities=21% Similarity=0.257 Sum_probs=134.5
Q ss_pred CcccchhhhccChhhhh-hhHHHHHHHHhhccccCcCC-CccchhhhhhhhcCCCCCCCCCCCchHHHHHHHHHHhcCCc
Q psy746 8 AAQIDMVTWMHRPSIVQ-GYLDHLLEGQQTQFIQPFED-WWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMP 85 (178)
Q Consensus 8 ~~~~~L~d~~~~p~~l~-~~~d~llrGl~~q~~~~~d~-~~~~~~l~~~lf~~~~~~~~~~~g~DL~alnIqRgRDhGlp 85 (178)
...++|++.||+|..+. ++++++++||+.|+++++|. .. . ...++||+++|||||||||||
T Consensus 368 ~~~~~l~~~ff~~~~~~~~g~~~ll~g~~~q~a~~~~~~~n-~----------------~~~~~dL~alnIqRgRDhGlp 430 (553)
T 1q4g_A 368 PQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRN-I----------------DHHILHVAVDVIKESRVLRLQ 430 (553)
T ss_dssp TEEECHHHHTTCSSHHHHHCHHHHHHHHHHSBCBCSSSSSC-B----------------CTTTHHHHHHHHHHHHHTTCC
T ss_pred CCcccHHHHhcCchhhhcccHHHHHHHhhhchhhccccccc-C----------------cHHHHHHHHHHHHHHHhhCCC
Confidence 34688999999998887 99999999999999999843 22 1 127899999999999999999
Q ss_pred cHHHHHHHhCCCCCCCcccccCCCCHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHH-HHHHhh---c
Q psy746 86 GYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIAD-QFYRWK---F 161 (178)
Q Consensus 86 ~Yn~~R~~cgl~~~~~f~dl~~~~~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~-qF~rl~---~ 161 (178)
+||+||++|||+++++|+||++ +++++++|+++|++|||||||||+++|++++|+++||||.|||++ ||+|++ .
T Consensus 431 ~YN~~R~~~gL~~~~tf~dl~~--d~~~~~~L~~lY~~~ddiDL~vG~laE~~~~G~~~Gpt~~~ii~~~~~~~l~~~~~ 508 (553)
T 1q4g_A 431 PFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPI 508 (553)
T ss_dssp CHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHHHHHSCBCTTCSSBHHHHHHHHHHHHHHHHTSGG
T ss_pred cHHHHHHHcCCCCCCCHHHhcC--CHHHHHHHHHHhcChhhccccccccccccCCCCCccHHHHHHHHHHHHHHHhhCcC
Confidence 9999999999999999999998 899999999999999999999999999999999999999999998 799997 5
Q ss_pred CCcceeecCCCCCCCCC
Q psy746 162 GDRFWFSVLGKPWSFTE 178 (178)
Q Consensus 162 gDRf~ye~~~~p~~Ft~ 178 (178)
|||||| +|++||+
T Consensus 509 ~d~~~~----~~~~ft~ 521 (553)
T 1q4g_A 509 CSPEYW----KASTFGG 521 (553)
T ss_dssp GSTTTC----SGGGGTS
T ss_pred CCcccc----CCCCcCH
Confidence 999888 3578885
No 5
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=40.17 E-value=23 Score=30.63 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHhcCCccHH--HHHHHhCCCCCCCcccccCCCCHHHHHHHHHhcc
Q psy746 79 QRDYGMPGYN--EFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYK 122 (178)
Q Consensus 79 gRDhGlp~Yn--~~R~~cgl~~~~~f~dl~~~~~~~~~~~L~~lY~ 122 (178)
-.++|.|+|- +.-++.--+.+.+|++|++ ++.++.++|++.|.
T Consensus 32 ~~~~g~~~fra~qi~~w~~~~~~~~~~~mt~-l~k~~r~~l~~~~~ 76 (404)
T 3rfa_A 32 FKDLGEKPFRADQVMKWMYHYCCDNFDEMTD-INKVLRGKLKEVAE 76 (404)
T ss_dssp HHHTTCCHHHHHHHHHHHHHSCCCCGGGCTT-SCHHHHHHHHHHEE
T ss_pred HHHcCCcchHHHHHHHHHHhcCCCChHHhcc-cCHHHHHHHHhcCC
Confidence 4578999873 2333444466899999998 59999999999883
No 6
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=38.74 E-value=15 Score=23.06 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCccHH
Q psy746 71 LTAIGIQRQRDYGMPGYN 88 (178)
Q Consensus 71 L~alnIqRgRDhGlp~Yn 88 (178)
.++..|.|+|..||=||.
T Consensus 35 ~l~~AIKrAR~~~LlP~~ 52 (55)
T 3r8n_R 35 QLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 478899999999999884
No 7
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=34.40 E-value=18 Score=19.26 Aligned_cols=10 Identities=60% Similarity=0.773 Sum_probs=8.1
Q ss_pred HHHHHHHHhh
Q psy746 151 VIADQFYRWK 160 (178)
Q Consensus 151 ii~~qF~rl~ 160 (178)
.|+|||-|+.
T Consensus 15 cI~DQFHR~h 24 (27)
T 2vog_B 15 CIADQFHRLH 24 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3789999886
No 8
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=31.41 E-value=37 Score=25.70 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhccCCCcccccccccCCCCCCCCCC-------------------ChHHHHHHHHHH
Q psy746 110 GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLF-------------------GPTFTYVIADQF 156 (178)
Q Consensus 110 ~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~-------------------Gpt~~cii~~qF 156 (178)
+++.+++|.++++=+++. +..|.+-|..|+.. |+|+-.+|.++|
T Consensus 54 s~e~A~kLa~~LgL~~e~---~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vYG~~~K~li~E~F 116 (156)
T 1dw9_A 54 PADAARLVGAKLDLDEDS---ILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKF 116 (156)
T ss_dssp CHHHHHHHHHHTTCCHHH---HHHTTSBCCCCCCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCcCHHH---HHHHhcCCcCCCCCCCCCCCCeehhHHHHHHHhhHHHHHHHHHHc
Confidence 678999999999754443 45677778887543 566667777776
No 9
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=29.56 E-value=23 Score=23.55 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCccHH
Q psy746 71 LTAIGIQRQRDYGMPGYN 88 (178)
Q Consensus 71 L~alnIqRgRDhGlp~Yn 88 (178)
.++..|.|+|..||=||.
T Consensus 54 ~l~~AIKrAR~~gLlP~~ 71 (75)
T 3i1m_R 54 QLARAIKRARYLSLLPYT 71 (75)
T ss_dssp HHHHHHHHHHTTTSSCSS
T ss_pred HHHHHHHHHHHhccCCcC
Confidence 478899999999999884
No 10
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=29.33 E-value=29 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.596 Sum_probs=22.0
Q ss_pred CCCC-CCCccccc-----CCCCHHHHHHHHHhcc
Q psy746 95 GLKP-VKSFEELS-----DVIGPENIHLLKLGYK 122 (178)
Q Consensus 95 gl~~-~~~f~dl~-----~~~~~~~~~~L~~lY~ 122 (178)
+||+ ++||.+++ +.|+++.....+++|+
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy~ 64 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVYK 64 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5544 88898875 4568999999999996
No 11
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=25.74 E-value=28 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=13.6
Q ss_pred HHHH-HhhcCCc-ceeecCCCCC
Q psy746 154 DQFY-RWKFGDR-FWFSVLGKPW 174 (178)
Q Consensus 154 ~qF~-rl~~gDR-f~ye~~~~p~ 174 (178)
..|. ..|.||+ |||.....|+
T Consensus 37 rn~mr~Mk~GD~~ffYHS~~~~g 59 (145)
T 2gbs_A 37 KLHMVAMRRGDRAFYYHSNEGKE 59 (145)
T ss_dssp HHHHHHCCTTCEEEEEETTTTCE
T ss_pred HHHHHhcCCCCEEEEEEeCCCCc
Confidence 3344 4889999 7776654443
No 12
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=25.24 E-value=69 Score=26.23 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHHhcCCccHHHHHHHhCCCCCCCcccccCC----CCHHHHHHHHHhc--cCCCcccccccccCCCCCC
Q psy746 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDV----IGPENIHLLKLGY--KHVDDIDLFVGGYLENPLH 140 (178)
Q Consensus 67 ~g~DL~alnIqRgRDhGlp~Yn~~R~~cgl~~~~~f~dl~~~----~~~~~~~~L~~lY--~~vddVDL~vG~l~E~~~~ 140 (178)
...|.+++ |||.+. |.+||..|.--.+..|..|.+. ++++.++.+.+-| .+++.=|.=.|...+.-..
T Consensus 40 ~~~D~asl--qRG~qV----y~evCaaCHsl~~v~yr~L~d~Ggp~~te~evka~a~~~~v~d~~~G~~r~~~~~D~~p~ 113 (263)
T 2yiu_B 40 GKFDQHQL--QRGLQV----YTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDITDPETEEDRPRVPTDHFPT 113 (263)
T ss_dssp CCCCHHHH--HHHHHH----HHHTGGGTCCCTTCBGGGGGSTTSCCCCHHHHHHHHTTSEEECSSSSSEEECCTTSBCCC
T ss_pred CccchHHH--HHHHHH----HHHHhhccCCcccchhHhhhhccCCCCCHHHHHHHHhhccccCCccccccCCCChHHhHH
Confidence 45677764 898764 8888888877666777777633 6777777776533 2343333333333333222
Q ss_pred --CCCCChHHHHH
Q psy746 141 --DSLFGPTFTYV 151 (178)
Q Consensus 141 --gs~~Gpt~~ci 151 (178)
++..+|=++-|
T Consensus 114 an~Ga~PPDLSli 126 (263)
T 2yiu_B 114 VSGEGMGPDLSLM 126 (263)
T ss_dssp CCSTTCCCCCTTH
T ss_pred hhCCCCCCChHHH
Confidence 34555655544
No 13
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=24.88 E-value=35 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhcCCccHH
Q psy746 70 DLTAIGIQRQRDYGMPGYN 88 (178)
Q Consensus 70 DL~alnIqRgRDhGlp~Yn 88 (178)
-.++..|.|+|.+||=||.
T Consensus 64 R~l~~AIKrAR~lgLLP~~ 82 (88)
T 2vqe_R 64 RILAKTIKRARILGLLPFT 82 (88)
T ss_dssp HHHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHHHhcCCcc
Confidence 3488899999999998874
No 14
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=23.37 E-value=33 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=13.5
Q ss_pred HHHHH-hhcCCc-ceeecCCCCC
Q psy746 154 DQFYR-WKFGDR-FWFSVLGKPW 174 (178)
Q Consensus 154 ~qF~r-l~~gDR-f~ye~~~~p~ 174 (178)
.-|.| .|.||+ |||.....|+
T Consensus 38 rN~mr~Mk~GD~~fFYHS~~~~g 60 (155)
T 1zce_A 38 RNNMRAMKIGDKGFFYHSNEGLD 60 (155)
T ss_dssp HHHHHTCCTTCEEEEEETTTTCE
T ss_pred HHHHHhccCCCEEEEEEeCCCCc
Confidence 34444 888999 7776554443
Done!