Query psy746
Match_columns 178
No_of_seqs 116 out of 848
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 18:53:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy746.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/746hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1cxp.1 a.93.1.2 (A:,C:) Myelo 100.0 4.7E-51 3.4E-55 371.7 11.2 161 9-178 349-514 (570)
2 d1cvua1 a.93.1.2 (A:74-583) Pr 100.0 1.6E-46 1.2E-50 338.0 10.0 153 8-178 327-480 (511)
3 d1q4ga1 a.93.1.2 (A:74-584) Pr 100.0 2E-45 1.4E-49 330.9 10.4 152 8-177 326-478 (511)
4 d1rutx4 g.39.1.3 (X:114-146) L 79.0 0.24 1.7E-05 26.5 0.5 14 158-171 8-21 (33)
5 d2qalr1 a.4.8.1 (R:19-73) Ribo 43.3 5.2 0.00038 23.6 1.7 19 70-88 34-52 (55)
6 d2uubr1 a.4.8.1 (R:19-88) Ribo 31.9 9.9 0.00072 23.4 1.7 18 71-88 47-64 (70)
7 d2edua1 a.60.2.7 (A:8-98) KIF2 31.3 33 0.0024 21.7 4.4 30 89-120 51-82 (91)
8 d3cx5d1 a.3.1.3 (D:62-260) Cyt 27.2 30 0.0022 25.2 4.1 50 67-122 22-72 (199)
9 d1ppjd1 a.3.1.3 (D:1-195) Cyto 25.8 20 0.0014 26.1 2.7 52 67-124 19-71 (195)
10 d1af7a1 a.58.1.1 (A:11-91) Che 20.1 28 0.002 21.0 2.2 27 72-98 41-67 (81)
No 1
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.7e-51 Score=371.71 Aligned_cols=161 Identities=27% Similarity=0.439 Sum_probs=150.4
Q ss_pred cccchhhhccChhhhh--hhHHHHHHHHhhcccc--CcCCCccchhhhhhhhcCCCCCCCCCCCchHHHHHHHHHHhcCC
Q psy746 9 AQIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQ--PFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGM 84 (178)
Q Consensus 9 ~~~~L~d~~~~p~~l~--~~~d~llrGl~~q~~~--~~d~~~~~~~l~~~lf~~~~~~~~~~~g~DL~alnIqRgRDhGl 84 (178)
..++|.++|++|..+. +++|.+++||+.|+++ +.|..+ +++|+++||+... ..|+||+|+||||||||||
T Consensus 349 ~~~~l~~~~~~~~~~~~~~~~d~~~~g~~~~~a~~~~~d~~~-~~~l~~~lf~~~~-----~~g~DL~alnIqRGRd~Gl 422 (570)
T g1cxp.1 349 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIA-VDEIRERLFEQVM-----RIGLDLPALNMQRSRDHGL 422 (570)
T ss_dssp SEEEGGGTTTCHHHHHHTTCSHHHHHHHHSSEEECCBTTBCS-CHHHHTCBTTTTS-----SSCBCHHHHHHHHHHHTTC
T ss_pred cccchhhhccchhhhhcccChhHHHHHHhhCchhhcccchhh-hHHHHHHhhccCc-----ccchhhHHHHHHHHHhcCC
Confidence 3478999999999887 8999999999999986 779999 9999999997655 3899999999999999999
Q ss_pred ccHHHHHHHhCCCCCCCcccccCCC-CHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q psy746 85 PGYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGD 163 (178)
Q Consensus 85 p~Yn~~R~~cgl~~~~~f~dl~~~~-~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~qF~rl~~gD 163 (178)
|+||+||++|||++++||+||++.+ +++++++|+++|++|||||||||+++|++++|+.+||||.|||++||.|||+||
T Consensus 423 p~Yn~~R~~~gL~~~~sf~dl~~~~~~~~~~~~L~~lY~~vddIDL~vG~laE~~~~G~~~Gptf~~ii~~qF~rlr~gD 502 (570)
T g1cxp.1 423 PGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGD 502 (570)
T ss_dssp CCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSTTSSCHHHHHHHSCCCTTSSSCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHcCCCCCCCHHHHhhhcCCHHHHHHHHHHhCChhHhhHhcchhcCCCCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998765 689999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCCC
Q psy746 164 RFWFSVLGKPWSFTE 178 (178)
Q Consensus 164 Rf~ye~~~~p~~Ft~ 178 (178)
|||||| |++||+
T Consensus 503 RF~yen---~~~ft~ 514 (570)
T g1cxp.1 503 RFWWEN---EGVFSM 514 (570)
T ss_dssp TTCTTS---TTTSCH
T ss_pred CCeecC---CCCCCH
Confidence 999996 468984
No 2
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=1.6e-46 Score=337.99 Aligned_cols=153 Identities=24% Similarity=0.285 Sum_probs=141.3
Q ss_pred CcccchhhhccChhhhh-hhHHHHHHHHhhccccCcCCCccchhhhhhhhcCCCCCCCCCCCchHHHHHHHHHHhcCCcc
Q psy746 8 AAQIDMVTWMHRPSIVQ-GYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPG 86 (178)
Q Consensus 8 ~~~~~L~d~~~~p~~l~-~~~d~llrGl~~q~~~~~d~~~~~~~l~~~lf~~~~~~~~~~~g~DL~alnIqRgRDhGlp~ 86 (178)
...+++.+++++|..+. ++++.+++|+..|++++++... + . +..+.||+++|||||||||||+
T Consensus 327 ~~~~~l~~~~~~~~~~~~~gl~~~~~~~~~q~a~~~~~~~-n----------~-----~~~~~dl~al~IqRgRd~Glp~ 390 (511)
T d1cvua1 327 DQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGR-N----------V-----PIAVQAVAKASIDQSREMKYQS 390 (511)
T ss_dssp TEEECHHHHTTCHHHHHHHHHHHHHHHHHHSBCBCSTTSS-C----------B-----CGGGHHHHHHHHHHHHHTTCCC
T ss_pred CccccHHHHhcCcchhhhcCHHHHHHHHHHHHhhhccccc-C----------C-----CchhhhHHHhhhHhHhhcCCCc
Confidence 44578999999999988 9999999999999999875322 1 0 2367899999999999999999
Q ss_pred HHHHHHHhCCCCCCCcccccCCCCHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHHHHHHhhcCCcce
Q psy746 87 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFW 166 (178)
Q Consensus 87 Yn~~R~~cgl~~~~~f~dl~~~~~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~qF~rl~~gDRf~ 166 (178)
||+||++|||++++||+||++ +++++++|+++|++|||||||||+++|++++|+++||||.|||++||.|+|.|||||
T Consensus 391 yN~~R~~~gL~~~~sFedl~~--d~~~~~~L~~lY~~vddVDL~vG~laE~~~~g~~~GpT~~~ii~~qf~r~r~gDRf~ 468 (511)
T d1cvua1 391 LNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPIC 468 (511)
T ss_dssp HHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHHHHHSCCSTTCSSCHHHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHcCCCCCCCHHHhCC--CHHHHHHHHHHhCChhHhhhhhchhccCcCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCC
Q psy746 167 FSVLGKPWSFTE 178 (178)
Q Consensus 167 ye~~~~p~~Ft~ 178 (178)
|||..+|++||.
T Consensus 469 ~e~~~~p~~ft~ 480 (511)
T d1cvua1 469 SPQYWKPSTFGG 480 (511)
T ss_dssp STTTSSGGGGTS
T ss_pred ccCCCCCCCcCc
Confidence 999999999983
No 3
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]}
Probab=100.00 E-value=2e-45 Score=330.90 Aligned_cols=152 Identities=21% Similarity=0.247 Sum_probs=141.0
Q ss_pred CcccchhhhccChhhhh-hhHHHHHHHHhhccccCcCCCccchhhhhhhhcCCCCCCCCCCCchHHHHHHHHHHhcCCcc
Q psy746 8 AAQIDMVTWMHRPSIVQ-GYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPG 86 (178)
Q Consensus 8 ~~~~~L~d~~~~p~~l~-~~~d~llrGl~~q~~~~~d~~~~~~~l~~~lf~~~~~~~~~~~g~DL~alnIqRgRDhGlp~ 86 (178)
...+.+.+.+++|..+. +|++.+++|+++|++++++... + . ...++||+++|||||||||||+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~l~~gl~~q~a~~~~~~~-~----------~-----~~~~~dl~~~~IqRgRd~Glp~ 389 (511)
T d1q4ga1 326 PQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGR-N----------I-----DHHILHVAVDVIKESRVLRLQP 389 (511)
T ss_dssp TEEECHHHHTTCSSHHHHHCHHHHHHHHHHSBCBCSSSSS-C----------B-----CTTTHHHHHHHHHHHHHTTCCC
T ss_pred CccccHHHhhcCchhhhhcchHHHHHHHhhCccccccccc-c----------C-----ChhHHHHHHHHHHHHHhcCCCc
Confidence 44578899999999988 9999999999999999987654 2 1 2378999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcccccCCCCHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHHHHHHhhcCCcce
Q psy746 87 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFW 166 (178)
Q Consensus 87 Yn~~R~~cgl~~~~~f~dl~~~~~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~qF~rl~~gDRf~ 166 (178)
||+||++|||++++||+||++ +++++++|+++|++|||||||||+++|++++|+++||||.|||++||.|++.|||||
T Consensus 390 YN~~R~~~gL~~~~sFedl~~--d~~~~~~L~~lYg~vddVDL~vG~laE~~~~G~~~GpT~~~ii~~qf~r~~~gDRf~ 467 (511)
T d1q4ga1 390 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPIC 467 (511)
T ss_dssp HHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHHHHHSCBCTTCSSBHHHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHcCCCcCCCHHHhCC--CHHHHHHHHHHhCCHhHhhHhhchhccccCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q psy746 167 FSVLGKPWSFT 177 (178)
Q Consensus 167 ye~~~~p~~Ft 177 (178)
||+..+|++|+
T Consensus 468 ~e~~~~~~~f~ 478 (511)
T d1q4ga1 468 SPEYWKASTFG 478 (511)
T ss_dssp STTTCSGGGGT
T ss_pred ccCcCCCCCCC
Confidence 99988887773
No 4
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=79.02 E-value=0.24 Score=26.46 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=11.5
Q ss_pred HhhcCCcceeecCC
Q psy746 158 RWKFGDRFWFSVLG 171 (178)
Q Consensus 158 rl~~gDRf~ye~~~ 171 (178)
||..||||.|-|+.
T Consensus 8 ~LVPGDRFHyvNG~ 21 (33)
T d1rutx4 8 RLVPGDRFHYINGS 21 (33)
T ss_dssp BCCTTCEEEEETTE
T ss_pred cccCCceeEEecCE
Confidence 67789999998863
No 5
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=43.29 E-value=5.2 Score=23.56 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhcCCccHH
Q psy746 70 DLTAIGIQRQRDYGMPGYN 88 (178)
Q Consensus 70 DL~alnIqRgRDhGlp~Yn 88 (178)
-.++-.|.|+|.+||-||.
T Consensus 34 r~l~~aIkrAR~~gLlP~~ 52 (55)
T d2qalr1 34 RQLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHHTTSSCSS
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 3478899999999999985
No 6
>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}
Probab=31.93 E-value=9.9 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCccHH
Q psy746 71 LTAIGIQRQRDYGMPGYN 88 (178)
Q Consensus 71 L~alnIqRgRDhGlp~Yn 88 (178)
.++-.|.|+|.+||-||.
T Consensus 47 ~l~~aIkrAR~~gLlPy~ 64 (70)
T d2uubr1 47 ILAKTIKRARILGLLPFT 64 (70)
T ss_dssp HHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHHhccccc
Confidence 478899999999999884
No 7
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.26 E-value=33 Score=21.69 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=22.8
Q ss_pred HHHHHhCCCCCCCcccccCC--CCHHHHHHHHHh
Q psy746 89 EFRKYAGLKPVKSFEELSDV--IGPENIHLLKLG 120 (178)
Q Consensus 89 ~~R~~cgl~~~~~f~dl~~~--~~~~~~~~L~~l 120 (178)
+||+.-| ++++++||... |+++.++++++.
T Consensus 51 ~yR~~~G--~f~sledL~~V~Gi~~k~~eki~k~ 82 (91)
T d2edua1 51 GWRELHG--PFSQVEDLERVEGITGKQMESFLKA 82 (91)
T ss_dssp HHHHHHC--CCSSGGGGGGSTTCCHHHHHHHHHH
T ss_pred HHHHHcC--CCCCHHHHhcCCCCCHHHHHHHHHc
Confidence 5666644 78899999764 689999988764
No 8
>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.24 E-value=30 Score=25.17 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=37.1
Q ss_pred CCchHHHHHHHHHHhcCCccHHHHHHHhCCCCCCCcccccCCC-CHHHHHHHHHhcc
Q psy746 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYK 122 (178)
Q Consensus 67 ~g~DL~alnIqRgRDhGlp~Yn~~R~~cgl~~~~~f~dl~~~~-~~~~~~~L~~lY~ 122 (178)
...|-++| |||-. -|.+||.-|.--.+-.|..|.+.. +++-++.+++-|.
T Consensus 22 g~~DkasL--QRG~q----vy~~~C~~CHsl~y~ryr~l~d~g~~e~~v~~~aa~~~ 72 (199)
T d3cx5d1 22 ETFDHASI--RRGYQ----VYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFE 72 (199)
T ss_dssp CCCCHHHH--HHHHH----HHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHTTSE
T ss_pred cccCHHHH--HHHHH----HHHHHhhhcccchhhhhhhhcccccchhHHHHHHHHhc
Confidence 56888875 88755 588999999776677777776532 6788888877775
No 9
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.77 E-value=20 Score=26.10 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=38.3
Q ss_pred CCchHHHHHHHHHHhcCCccHHHHHHHhCCCCCCCcccccCCC-CHHHHHHHHHhccCC
Q psy746 67 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYKHV 124 (178)
Q Consensus 67 ~g~DL~alnIqRgRDhGlp~Yn~~R~~cgl~~~~~f~dl~~~~-~~~~~~~L~~lY~~v 124 (178)
...|-+|| |||-. -|.+||.-|.--.+-.|..|.+.. +++.++.+...+...
T Consensus 19 g~~DkaSL--QRGaq----vf~nyC~gCHsl~y~ry~~l~d~g~~~~~~~~~a~~~~~~ 71 (195)
T d1ppjd1 19 SSLDHTSI--RRGFQ----VYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQ 71 (195)
T ss_dssp CCCCHHHH--HHHHH----HHHHTGGGTCCCTTCBHHHHBTTTBCHHHHHHHHTTSEEE
T ss_pred ccccHHHH--HhHHH----HHHHHHhhccchhhHHHHHHhccccchHHHHHHHHhhccc
Confidence 56888865 88865 488999999777777887776533 677777777777643
No 10
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=20.09 E-value=28 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCccHHHHHHHhCCCC
Q psy746 72 TAIGIQRQRDYGMPGYNEFRKYAGLKP 98 (178)
Q Consensus 72 ~alnIqRgRDhGlp~Yn~~R~~cgl~~ 98 (178)
..-=-.|.|.+|+.+|.+|-.++--.+
T Consensus 41 ~~RL~~rm~~~g~~s~~~Y~~~L~~~~ 67 (81)
T d1af7a1 41 YNRLVRRLRALGLDDFGRYLSMLEANQ 67 (81)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 444456899999999999999885443
Done!