RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy746
(178 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 163 bits (416), Expect = 1e-49
Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 11 IDMVTWMHRPSIV--QGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHG 68
+++ P + +G LD LL G TQ Q + ++ D + PF G
Sbjct: 196 VNLHDLFFNPDRLYEEGGLDPLLRGLATQPAQKVDRFFTDELTTHFFFRGGNPF-----G 250
Query: 69 DDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDID 128
DL A+ IQR RD+G+PGYN++R++ GL +F++L ++ PE I L+ YK VDDID
Sbjct: 251 LDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDLLGIMSPETIQKLRRLYKSVDDID 310
Query: 129 LFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
L+VGG E P+ L GPTF +I +QF R + GDRFW+ G+P SFT
Sbjct: 311 LYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYENGGQPSSFTP 360
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 149 bits (378), Expect = 4e-43
Identities = 71/171 (41%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 11 IDMVTWMHRPS-IVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGD 69
I + PS I++ +D LL G +Q + D + N+L P + G
Sbjct: 329 IPLHDTFFNPSRILEEGIDPLLRGLASQPAEL-LDNSLSDELRNRL---FGPRNFPGSGL 384
Query: 70 DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHVDDI 127
DL A+ IQR RD+G+P YNE+R++ GLKP SFE+L+D IG E + L +L Y DDI
Sbjct: 385 DLAALNIQRGRDHGLPPYNEYRRFCGLKPATSFEDLTDEIGDEELAEKLKEL-YGDPDDI 443
Query: 128 DLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
DL+VGG E P+ L GPTF +IA+QF R + GDRFW+ P FT
Sbjct: 444 DLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDGDRFWYE---NPGVFTG 491
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 123 bits (311), Expect = 8e-34
Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Query: 70 DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIG-PENIHLLKLGYKHVDDID 128
DL A+ IQR RD+G+PGYN++RK+ L ++FE+L + I + LK Y H +ID
Sbjct: 290 DLAALNIQRGRDHGLPGYNDYRKFCNLSVAETFEDLKNEIKNDDVREKLKRLYGHPGNID 349
Query: 129 LFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
LFVGG LE+ L + GPT ++A+QF R + GDRFW+ P F+
Sbjct: 350 LFVGGILEDLLPGARVGPTLACLLAEQFRRLRDGDRFWYE---NPGVFSP 396
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 119 bits (301), Expect = 2e-32
Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 10/147 (6%)
Query: 22 IVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRD 81
+ + +D LL G +Q Q D + ++ N L PP G DL A+ IQR RD
Sbjct: 245 LEENGIDPLLRGLASQVAQEI-DTFIVDDVRNFL--FGPP---GAGGFDLAALNIQRGRD 298
Query: 82 YGMPGYNEFRKYAGLKPVKSFEEL-SDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLH 140
+G+P YN+ R+ GL V SF ++ SD P+ L Y VD IDL+VGG E+ ++
Sbjct: 299 HGLPSYNQLREALGLPAVTSFSDITSD---PDLAARLASVYGDVDQIDLWVGGLAEDHVN 355
Query: 141 DSLFGPTFTYVIADQFYRWKFGDRFWF 167
L G TF+ +IADQF R + GDRF++
Sbjct: 356 GGLVGETFSTIIADQFTRLRDGDRFFY 382
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 93.5 bits (233), Expect = 1e-22
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 70 DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDV---IGPENI-HLLKLGYKHVD 125
DL A+ IQR RD+G+P YN R+ GL P ++ +++ PE + L +L +
Sbjct: 384 DLMALNIQRGRDHGLPDYNTAREAFGLPPRTTWSDINPDLFKKDPELLERLAELYGNDLS 443
Query: 126 DIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWF 167
+DL+VGG LE G F +I DQF R + GDRFWF
Sbjct: 444 KLDLYVGGMLE--SKGGGPGELFRAIILDQFQRLRDGDRFWF 483
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 91.7 bits (228), Expect = 4e-22
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 70 DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLG--YKHVDDI 127
DL ++ +QR RD+G+PGYN++R++ GL + + +L+ I + K+ YKH D+I
Sbjct: 405 DLASLNLQRGRDHGLPGYNDWREFCGLPRLATPADLATAIA-DQAVADKILDLYKHPDNI 463
Query: 128 DLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWF 167
D+++GG E+ L + GP F +I Q + GDRFW+
Sbjct: 464 DVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGDRFWW 503
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 86.3 bits (214), Expect = 2e-20
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 65 DPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEE-LSDVIGPENIHLLKLGYKH 123
+ G DL A+ IQR RD G+P YNE R++ GLKP SF++ L+D PE L Y
Sbjct: 243 EGVGLDLAALNIQRGRDLGLPSYNEVRRFIGLKPPTSFQDILTD---PELAKKLAELYGD 299
Query: 124 VDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFS 168
DD+DL+VGG LE + + G +I +QF R GDRF++
Sbjct: 300 PDDVDLWVGGLLEKKVPPARLGELLATIILEQFKRLVDGDRFYYV 344
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 81.7 bits (202), Expect = 1e-18
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 68 GDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHVD 125
G DL A+ +QR RD+G+PGYN +R++ GL ++ EL+ V+ + LL L Y D
Sbjct: 264 GLDLAALNLQRGRDHGLPGYNAWRRFCGLSQPQNLAELAAVLNNTVLARKLLDL-YGTPD 322
Query: 126 DIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
+ID+++GG E + GP +I+ QF R + GDRFW+ P FTE
Sbjct: 323 NIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGDRFWWE---NPGVFTE 372
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 65.4 bits (160), Expect = 6e-13
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 76 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELS-DVIGPENIHLLKLGYKHVDDIDLFVGGY 134
I++ R + +N++RK GL P SFEEL+ D PE L+ Y VD ++ +VG +
Sbjct: 365 IEQGRKLRLASFNDYRKRFGLPPYTSFEELTGD---PEVAAELEELYGDVDAVEFYVGLF 421
Query: 135 LENPLHDSLFGPTFTYVIA 153
E+P +S P ++A
Sbjct: 422 AEDPRPNSPLPPLMVEMVA 440
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 61.1 bits (149), Expect = 2e-11
Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 58 NHPPFQYD---PHGD--DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPE 112
N+P F D P G DL AI I R R+ G+P YNEFR+ L P KSFE+L+ E
Sbjct: 324 NYPRFLRDLHRPDGRVIDLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFEDLTG--DEE 381
Query: 113 NIHLLKLGY-KHVDDIDLFVGGYLENP 138
L+ Y V+ +DL VG E
Sbjct: 382 VAAELREVYGGDVEKVDLLVGLLAEPL 408
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 53.1 bits (128), Expect = 1e-08
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 70 DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDL 129
+ +GI + R++ + NEFRK+ GLKP ++FE+++ PE L+L Y H D+++L
Sbjct: 374 VIEILGILQAREWNVATLNEFRKFFGLKPYETFEDINS--DPEVAEALELLYGHPDNVEL 431
Query: 130 FVGGYLEN----PLHDSLFGPTFT--YVI---ADQFYRWKFGDRF 165
+ G E+ S P +T I A R GDRF
Sbjct: 432 YPGLVAEDAKPPMPPGSGLCPGYTISRAILSDAVALVR---GDRF 473
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 43.6 bits (103), Expect = 2e-05
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 66 PHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGY-KHV 124
P D+ A+ I R R+ G+ YNEFR+ + P+ +E+L+D E I +L+ Y V
Sbjct: 468 PDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--DEEAIEVLREVYGDDV 525
Query: 125 DDIDLFVG 132
+ +DL VG
Sbjct: 526 EKLDLLVG 533
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 42.4 bits (100), Expect = 5e-05
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 124 VDDIDLFVGGYLENPLHD-SLFGPTFTYVIADQFYRWKFGDRFWF 167
+D++DL+VGG E + + G TF +V +Q R + GDRF++
Sbjct: 483 LDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYY 527
Score = 31.2 bits (71), Expect = 0.23
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 70 DLTAIGIQRQRDYGMPGYNEFR 91
DL A+ I R RD G+P NE R
Sbjct: 373 DLAALNIARGRDTGLPTLNEAR 394
>gnl|CDD|151976 pfam11539, DUF3228, Protein of unknown function (DUF3228). This
family of proteins has no known function.
Length = 196
Score = 27.8 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 85 PGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYK 122
GY F K+ L+ + I EN HLLK GY+
Sbjct: 47 DGYAPFCKHLFLENFTEATCGTLEITNENEHLLKTGYE 84
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is
involved in multiple, eukaryotic DNA metabolic
pathways, including DNA replication processes (5' flap
DNA endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this
group also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 27.1 bits (61), Expect = 4.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 5 SGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQT 36
GK +D +W+HR + L G+ T
Sbjct: 23 KGKRVAVDAYSWLHR--GAYSCAEELALGKPT 52
>gnl|CDD|114357 pfam05629, Nanovirus_C8, Nanovirus component 8 (C8) protein. This
family consists of a group of 17.4 kDa nanovirus
proteins which are highly related to the faba bean
necrotic yellows virus component 8 protein whose
function is unknown.
Length = 153
Score = 26.8 bits (59), Expect = 5.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 11/39 (28%)
Query: 25 GYLDH----LLEGQQT-------QFIQPFEDWWEDFNIN 52
GYL H EG+ T +++P EDW DF ++
Sbjct: 90 GYLYHNDYGYYEGKGTFNLDIESDYLKPDEDWSRDFEVS 128
>gnl|CDD|180606 PRK06525, PRK06525, hydrogenase 4 subunit D; Validated.
Length = 479
Score = 26.5 bits (59), Expect = 9.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 1 MIAKSGKAAQIDMVTW----MHRPSIVQGYL 27
+ A GK+AQ+ +W M P+ YL
Sbjct: 214 LFAAWGKSAQLPFYSWLPDAMEAPTPASAYL 244
>gnl|CDD|225158 COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug
activity B) [General function prediction only].
Length = 189
Score = 26.1 bits (58), Expect = 9.8
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 16 WMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNK-----LKTNHPPFQYDPHGDD 70
W P++++G++D + F + + K + T P Y G +
Sbjct: 79 WYSMPALLKGWIDRVF---TPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGN 135
Query: 71 LTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEEL-SDVIGPE 112
G+ YG Y GL + F +DVI E
Sbjct: 136 FF-EGVLLDPLYGT------FHYCGLGWLPPFTFYGADVIDDE 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.143 0.470
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,751,415
Number of extensions: 926924
Number of successful extensions: 722
Number of sequences better than 10.0: 1
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 24
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.0 bits)