RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy746
(178 letters)
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 133 bits (336), Expect = 3e-37
Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 19/169 (11%)
Query: 10 QIDMVTWMHRPSIV-QGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHG 68
+ +++ SI+ + L +E Q
Sbjct: 370 EYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRV----------------AGGRNVPIAV 413
Query: 69 DDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDID 128
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++
Sbjct: 414 QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAAELKALYSDIDVME 471
Query: 129 LFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 177
L+ +E P D++FG T + A + G+ KP +F
Sbjct: 472 LYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFG 520
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 128 bits (324), Expect = 2e-35
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 60 PPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKL 119
D H + I+ R + +NE+RK G+KP SF+EL+ E L+
Sbjct: 405 GGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGE--KEMAAELEE 462
Query: 120 GYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 177
Y +D ++ + G LE +S+FG + + A + G+ K +F
Sbjct: 463 LYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFG 520
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 124 bits (312), Expect = 3e-34
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 11 IDMVTWMHRPSIV--QGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHG 68
+ + V +G +D +L G P + ++ +++ Q G
Sbjct: 247 VPLSRVFFASWRVVLEGGIDPILRGLMAT---PAKLNRQNQIAVDEI-RERLFEQVMRIG 302
Query: 69 DDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIH-LLKLGYKHVDDI 127
DL A+ +QR RD+G+PGYN +R++ GL ++ +L V+ + L Y ++I
Sbjct: 303 LDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNI 362
Query: 128 DLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWF 167
D+++GG E GP +I QF + + GDRFW+
Sbjct: 363 DIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWW 402
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 118 bits (297), Expect = 8e-32
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 24 QGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYG 83
G +D L+ G + + +D + ++L+ + HG DL AI +QR RD+G
Sbjct: 389 DGGIDPLVRGL---LAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHG 445
Query: 84 MPGYNEFRKYAGLKPVKSFEELSDVIGPENIH-LLKLGYKHVDDIDLFVGGYLENPLHDS 142
MPGYN +R + GL K+ + L V+ + + L YK D+ID+++GG E +
Sbjct: 446 MPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERG 505
Query: 143 LFGPTFTYVIADQFYRWKFGDRFWF 167
GP ++ QF + + GDRFW+
Sbjct: 506 RVGPLLACLLGRQFQQIRDGDRFWW 530
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.005
Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 33/145 (22%)
Query: 10 QIDMVTWM---HRPSIVQGYLDHLLEGQ--------QTQFIQPFEDWWEDFNINNKLKTN 58
+ W + +VQ +++ +L +T+ QP ++L +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 59 HPPF-QYD-PHGDDLTAI--GIQRQRD------YGMPGYNEFRKYAGLKPVKSFEELSD- 107
+ F +Y+ + + R G+ G +G K + +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-------SG-KTWVALDVCLSY 174
Query: 108 ---VIGPENIHLLKLGYKHVDDIDL 129
I L L + + L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVL 199
Score = 35.6 bits (81), Expect = 0.006
Identities = 17/128 (13%), Positives = 45/128 (35%), Gaps = 19/128 (14%)
Query: 25 GYLDHLLEGQQTQFIQPFEDWWEDFN-INNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYG 83
G+ HL + + + F + DF + K++ + + + T ++ + Y
Sbjct: 478 GH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYI 534
Query: 84 MPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSL 143
++ + + + F + E +L+ K+ D + + L +++
Sbjct: 535 CDNDPKYERL--VNAILDF-----LPKIEE-NLIC--SKYTDLLRI----ALMAE-DEAI 579
Query: 144 FGPTFTYV 151
F V
Sbjct: 580 FEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.17
Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 93/202 (46%)
Query: 11 IDMVTWMHRPSIV--QGYLDH------LLEGQQTQFIQ-----------PFE-------- 43
++++ W+ PS + YL L+ Q P E
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 44 ----------------DWWEDF--NINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMP 85
D WE F ++ + L IG++ Y P
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITV-------------LFFIGVRCYEAY--P 315
Query: 86 GYNEFRKYAGLKP--VKSFEE---------LSDVIGPENIHLLKLGYKHVDDIDLFVGGY 134
+ L P ++ E LS + + +V+ + +
Sbjct: 316 NTS-------LPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQ----DYVNKTN----SH 359
Query: 135 L--ENPLHDSLF-GPTFTYVIA 153
L + SL G V++
Sbjct: 360 LPAGKQVEISLVNGAK-NLVVS 380
Score = 30.4 bits (68), Expect = 0.34
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 19/48 (39%)
Query: 14 VTWMHRPSIVQGYLDHLLEGQQTQFIQP---------FEDWWEDFNIN 52
T+ +G L TQF QP FED I
Sbjct: 1717 YTFRS-E---KGLLS------ATQFTQPALTLMEKAAFEDLKSKGLIP 1754
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 27.8 bits (62), Expect = 1.9
Identities = 22/142 (15%), Positives = 34/142 (23%), Gaps = 20/142 (14%)
Query: 47 EDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGY---NEFRK-----YAGLKP 98
E I P P + R G+ Y N F G+
Sbjct: 256 EGNAIVEFDGARALPAAIAPALSVEAQV--YRALVLGVRDYIGKNGFPGAIIGLSGGVDS 313
Query: 99 VKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQF-- 156
D +G E + + + ++ I + + IA F
Sbjct: 314 ALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAAD----MARRVGVRYDEIAIAPMFDA 369
Query: 157 YRWKFGDRFWFSVLGKPWSFTE 178
+R F G TE
Sbjct: 370 FRASLAAEF----AGLAEDATE 387
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.143 0.470
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,061,143
Number of extensions: 182138
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 19
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)