BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7460
(1026 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 3/217 (1%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P WDWR K DQ CGSCWAFS+ G +EGQ+ + G L+ S+ +L++C K
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
C G + GLE+E DY Y+ G C + K K++
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQ---GHMQSCQFSAEKAKVYIQDSVELSQNE 117
Query: 496 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 555
+ + L K GP+SV +N+ + FY R CSP+ + HAVLLVGYG++ D+P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 556 LARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 592
+NSWG ++G++ + RG+ ACG+ +A A +D
Sbjct: 178 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214
Score = 142 bits (359), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 8/219 (3%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
P WDWR K DQ CGSCWAFS+ G +EGQ+ + G L+ S+ +L++C K
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD 60
Query: 802 SGCDGCFFEPSIEYT---HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
C G PS Y+ + GLE+E DY Y+ G C + K K++
Sbjct: 61 KACMGGL--PSNAYSAIKNLGGLETEDDYSYQ---GHMQSCQFSAEKAKVYIQDSVELSQ 115
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
+ + L K GP+SV +N+ + Y R CSP+ + HAVLLVGYG++ ++P
Sbjct: 116 NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVP 175
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 957
+W ++NSWG ++G++ + RG+ ACG+ +A A +D
Sbjct: 176 FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 8/219 (3%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
P WDWR K DQ CGSCWAFS+ G +EGQ+ + G L+ S+ +L++C K
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD 60
Query: 71 SGCDGCFFEPSIEYT---HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
C G PS Y+ + GLE+E DY Y+ G C + K K++
Sbjct: 61 KACMGGL--PSNAYSAIKNLGGLETEDDYSYQ---GHMQSCQFSAEKAKVYIQDSVELSQ 115
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
+ + L K GP+SV +N+ + Y R CSP+ + HAVLLVGYG++ ++P
Sbjct: 116 NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVP 175
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 226
+W ++NSWG ++G++ + RG+ ACG+ +A A +D
Sbjct: 176 FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 45/61 (73%)
Query: 965 CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 1024
CSP+ + HAVLLVGYG++ D+P+W ++NSWG ++G++ + RG+ ACG+ +A A +
Sbjct: 154 CSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 213
Query: 1025 D 1025
D
Sbjct: 214 D 214
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 119/223 (53%), Gaps = 21/223 (9%)
Query: 743 PDAWDWRKK-NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
P + DWRKK N P +Q +CGSCW FS G LE AI TGK++ ++ QLV+CA+
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 802 S--GCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
+ GC G + EY + G+ E YPYK G+ C + K F KD +
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK---GQDDHCKFQPDKAIAFV-KDVANIT 117
Query: 857 FNGSETMKKILYKYGPLSV---LLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVG 910
N E M + + Y P+S + N L++ Y+ T K +P + HAVL VG
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK-----TPDKVNHAVLAVG 172
Query: 911 YGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 953
YG+++ IPYW+V+NSWGP G+F IERG N CG+ A Y
Sbjct: 173 YGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 118/223 (52%), Gaps = 21/223 (9%)
Query: 12 PDAWDWRKK-NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
P + DWRKK N P +Q CGSCW FS G LE AI TGK++ ++ QLV+CA+
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 71 S--GCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 125
+ GC G + EY + G+ E YPYK G+ C + K F KD +
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK---GQDDHCKFQPDKAIAFV-KDVANIT 117
Query: 126 FNGSETMKKILYKYGPLSV---LLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVG 179
N E M + + Y P+S + N L++ Y+ T K +P + HAVL VG
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK-----TPDKVNHAVLAVG 172
Query: 180 YGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 222
YG+++ IPYW+V+NSWGP G+F IERG N CG+ A Y
Sbjct: 173 YGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 117/223 (52%), Gaps = 20/223 (8%)
Query: 377 PDAWDWRKK-NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWRKK N P +Q +CGSCW FS G LE AI TGK++ ++ QLV+CA+
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 436 SGCGGCDGL-EQPIEYT-HQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--LY 491
+ G GL Q EY + G+ E YPY+ G+ C + K F KD +
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK---GQDDHCKFQPDKAIAFV-KDVANIT 117
Query: 492 FNGSETMKKILYKYGPLSVGL---NSHLIH---FYNGTPIRKNDETCSPYDLGHAVLLVG 545
N E M + + Y P+S N L++ Y+ T K +P + HAVL VG
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK-----TPDKVNHAVLAVG 172
Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGY 588
YG+++ IPYW+ +NSWGP G+F IERG N CG+ A Y
Sbjct: 173 YGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 966 SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 1021
+P + HAVL VGYG+++ IPYW+V+NSWGP G+F IERG N CG+ A Y
Sbjct: 160 TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 6 EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
E +G PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+
Sbjct: 95 EWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVD 154
Query: 66 CAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDF 123
C + GC G + + +Y + G++SE YPY G++ C Y+ + K G
Sbjct: 155 CVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYRE 211
Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 183
+ + +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q
Sbjct: 212 IPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ 271
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 272 KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 6/221 (2%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
+G PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C
Sbjct: 97 EGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV 156
Query: 799 KQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLH 856
+ GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 157 SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIP 213
Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q
Sbjct: 214 EGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKG 273
Query: 917 IPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 274 NKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%)
Query: 373 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 432
+G PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C
Sbjct: 97 EGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV 156
Query: 433 KQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTGKDFL 490
+ GCGG + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 157 SENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREI 212
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q
Sbjct: 213 PEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK 272
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+W+ +NSWG ++G+ + R NNACGI +A + +
Sbjct: 273 GNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 251 DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 310
Query: 1021 YATI 1024
+ +
Sbjct: 311 FPKM 314
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 6/220 (2%)
Query: 9 GPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK 68
G PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C
Sbjct: 1 GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS 60
Query: 69 QCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHF 126
+ GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPE 117
Query: 127 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q
Sbjct: 118 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGN 177
Query: 187 PYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 KHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 6/220 (2%)
Query: 740 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK 799
G PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C
Sbjct: 1 GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS 60
Query: 800 QCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHF 857
+ GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPE 117
Query: 858 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q
Sbjct: 118 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGN 177
Query: 918 PYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 KHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 7/221 (3%)
Query: 374 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK 433
G PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C
Sbjct: 1 GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS 60
Query: 434 QCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTGKDFLY 491
+ GCGG + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 ENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIP 116
Query: 492 FNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD 551
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q
Sbjct: 117 EGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKG 176
Query: 552 IPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+W+ +NSWG ++G+ + R NNACGI +A + +
Sbjct: 177 NKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 154 DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 213
Query: 1021 YATI 1024
+ +
Sbjct: 214 FPKM 217
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 6/218 (2%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 71 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 128
GC G + + +Y + G++SE YPY G+ C Y+ + K G +
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
+ +K+ + + GP+SV +++ L + DE CS +L HAVL VGYG Q +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKH 177
Query: 189 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 WIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 6/218 (2%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 859
GC G + + +Y + G++SE YPY G+ C Y+ + K G +
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
+ +K+ + + GP+SV +++ L + DE CS +L HAVL VGYG Q +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKH 177
Query: 920 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 WIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 117/219 (53%), Gaps = 7/219 (3%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 436 SGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTGKDFLYFN 493
GCGG + +Y + G++SE YPY G+ C Y+ + K G +
Sbjct: 61 DGCGG-GYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEG 116
Query: 494 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
+ +K+ + + GP+SV +++ L F + DE CS +L HAVL VGYG Q
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNK 176
Query: 554 YWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+W+ +NSWG ++G+ + R NNACGI +A + +
Sbjct: 177 HWIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
DE CS +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 152 DENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLAS 211
Query: 1021 YATI 1024
+ +
Sbjct: 212 FPKM 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 139 bits (350), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 71 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 128
GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 177
Query: 189 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 859
GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 177
Query: 920 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 7/219 (3%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 436 SGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTGKDFLYFN 493
GCGG + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 DGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEG 116
Query: 494 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNK 176
Query: 554 YWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+W+ +NSWG ++G+ + R NNACGI +A + +
Sbjct: 177 HWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 152 DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 211
Query: 1021 YATI 1024
+ +
Sbjct: 212 FPKM 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 72 GCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGS 129
GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNE 117
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q +W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 190 LVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 IIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 803 GCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGS 860
GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNE 117
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q +W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 921 LVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 IIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 119/218 (54%), Gaps = 7/218 (3%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 437 GCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTGKDFLYFNG 494
GCGG + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 GCGG-GYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 116
Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q +
Sbjct: 117 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 176
Query: 555 WLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
W+ +NSWG ++G+ + R NNACGI +A + +
Sbjct: 177 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 151 DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 210
Query: 1021 YATI 1024
+ +
Sbjct: 211 FPKM 214
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
VPD DWR+ DQ +CGS WAFS G +EGQY + FS+ QLV+C++
Sbjct: 92 VPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW 151
Query: 71 --SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN 127
+GC G E + +Y Q GLE+E YPY G+ C Y+K V TG +H
Sbjct: 152 GNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEGQ---CRYNKQLGVAKVTGFYTVHSG 208
Query: 128 GSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 185
+K ++ GP +V ++ SD + +G +TCSP + HAVL VGYG Q
Sbjct: 209 SEVELKNLVGAEGPAAVAVDVESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGYGTQGG 265
Query: 186 IPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIA 220
YW+V+NSWG + G+ ++ R N CGI +A
Sbjct: 266 TDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 112/216 (51%), Gaps = 12/216 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
VPD DWR+ DQ CGS WAFS G +EGQY + FS+ QLV+C++
Sbjct: 92 VPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW 151
Query: 802 --SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN 858
+GC G E + +Y Q GLE+E YPY G+ C Y+K V TG +H
Sbjct: 152 GNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEGQ---CRYNKQLGVAKVTGFYTVHSG 208
Query: 859 GSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
+K ++ GP +V ++ SD + +G +TCSP + HAVL VGYG Q
Sbjct: 209 SEVELKNLVGAEGPAAVAVDVESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGYGTQGG 265
Query: 917 IPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIA 951
YW+V+NSWG + G+ ++ R N CGI +A
Sbjct: 266 TDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301
Score = 129 bits (325), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 115/221 (52%), Gaps = 21/221 (9%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
VPD DWR+ DQ CGS WAFS G +EGQY + FS+ QLV+C++
Sbjct: 92 VPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW 151
Query: 436 SGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDK----SKVKLFTGKDF 489
G GC G +E +Y Q GLE+E YPY G+ C Y+K +KV F +
Sbjct: 152 -GNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEGQ---CRYNKQLGVAKVTGF----Y 203
Query: 490 LYFNGSET-MKKILYKYGPLSVGLN--SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGY 546
+GSE +K ++ GP +V ++ S + + +G +TCSP + HAVL VGY
Sbjct: 204 TVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGY 260
Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIA 586
G Q YW+ +NSWG + G+ ++ R N CGI +A
Sbjct: 261 GTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 934 GFFKIERGN-----NACGIEQIAGYATIDV----------VKNDETCSPYDLGHAVLLVG 978
GF+ + G+ N G E A A +DV + +TCSP + HAVL VG
Sbjct: 201 GFYTVHSGSEVELKNLVGAEGPAAVA-VDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVG 259
Query: 979 YGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIA 1019
YG Q YW+V+NSWG + G+ ++ R N CGI +A
Sbjct: 260 YGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 137 bits (345), Expect = 3e-32, Method: Composition-based stats.
Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 7/217 (3%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P A DWR+K P DQ CGSCWAFS G +EGQ+ + LV S+ LV C
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 72 GCDGCFFEPSIEY---THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
GC G + + + ++ + +E YPY + NGE+ +C + ++
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQD 121
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
+ + L + GPL++ +++ DYNG + +C+ L H VLLVGY N PY
Sbjct: 122 EDAIAAYLAENGPLAIAVDATSFMDYNGGIL----TSCTSEQLDHGVLLVGYNDASNPPY 177
Query: 189 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
W+++NSW + ++G+ +IE+G N C + Q A +
Sbjct: 178 WIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 214
Score = 137 bits (345), Expect = 3e-32, Method: Composition-based stats.
Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 7/217 (3%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P A DWR+K P DQ CGSCWAFS G +EGQ+ + LV S+ LV C
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 803 GCDGCFFEPSIEY---THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
GC G + + + ++ + +E YPY + NGE+ +C + ++
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQD 121
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
+ + L + GPL++ +++ DYNG + +C+ L H VLLVGY N PY
Sbjct: 122 EDAIAAYLAENGPLAIAVDATSFMDYNGGIL----TSCTSEQLDHGVLLVGYNDASNPPY 177
Query: 920 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
W+++NSW + ++G+ +IE+G N C + Q A +
Sbjct: 178 WIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 214
Score = 134 bits (337), Expect = 2e-31, Method: Composition-based stats.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 6/217 (2%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P A DWR+K P DQ CGSCWAFS G +EGQ+ + LV S+ LV C
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 437 GCGG--CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
GCGG D I ++ + +E YPY +GNGE+ +C + ++
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQD 121
Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
+ + L + GPL++ +++ YNG + +C+ L H VLLVGY + PY
Sbjct: 122 EDAIAAYLAENGPLAIAVDATSFMDYNGGIL----TSCTSEQLDHGVLLVGYNDASNPPY 177
Query: 555 WLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
W+ +NSW + ++G+ +IE+G N C + Q A +
Sbjct: 178 WIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 214
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
+C+ L H VLLVGY + PYW+++NSW + ++G+ +IE+G N C + Q A
Sbjct: 154 SCTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213
Query: 1024 I 1024
+
Sbjct: 214 V 214
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 118/218 (54%), Gaps = 6/218 (2%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
PD+ D+R+K P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 71 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 128
GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG+ +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKH 177
Query: 189 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
W+++NSWG G+ K+ R NNACGI +A + +
Sbjct: 178 WIIKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 118/218 (54%), Gaps = 6/218 (2%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
PD+ D+R+K P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 859
GC G + + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
+ +K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG+ +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKH 177
Query: 920 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
W+++NSWG G+ K+ R NNACGI +A + +
Sbjct: 178 WIIKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 7/219 (3%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
PD+ D+R+K P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 436 SGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTGKDFLYFN 493
GCGG + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 DGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEG 116
Query: 494 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG+
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNK 176
Query: 554 YWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+W+ +NSWG G+ K+ R NNACGI +A + +
Sbjct: 177 HWIIKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
DE+C+ +L HAVL VGYG+ +W+++NSWG G+ K+ R NNACGI +A
Sbjct: 152 DESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANLAS 211
Query: 1021 YATI 1024
+ +
Sbjct: 212 FPKM 215
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 6/216 (2%)
Query: 13 DAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSG 72
D+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C + G
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 60
Query: 73 CDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSE 130
C G + + +Y + G++SE YPY G++ C Y+ + K G + +
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEK 117
Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 190
+K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q +W+
Sbjct: 118 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 177
Query: 191 VRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 6/216 (2%)
Query: 744 DAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSG 803
D+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C + G
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 60
Query: 804 CDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSE 861
C G + + +Y + G++SE YPY G++ C Y+ + K G + +
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEK 117
Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 921
+K+ + + GP+SV +++ L + DE+C+ +L HAVL VGYG Q +W+
Sbjct: 118 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 177
Query: 922 VRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
++NSWG ++G+ + R NNACGI +A + +
Sbjct: 178 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 7/217 (3%)
Query: 378 DAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSG 437
D+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C + G
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 60
Query: 438 CGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTGKDFLYFNGS 495
CGG + +Y + G++SE YPY G++ C Y+ + K G +
Sbjct: 61 CGG-GYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNE 116
Query: 496 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 555
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q +W
Sbjct: 117 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 176
Query: 556 LARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ +NSWG ++G+ + R NNACGI +A + +
Sbjct: 177 IIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 150 DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 209
Query: 1021 YATI 1024
+ +
Sbjct: 210 FPKM 213
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 150/322 (46%), Gaps = 27/322 (8%)
Query: 654 ILETFKAFIVKRGRQYANDEE-------IKERFEYFKQDGHKKHE-----RYGTSEFSDR 701
+ E ++ F R Y N +E +++ E F++ K + G + F+D
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 702 SPEEILCKT-GFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQ 760
+PEE+ T G ++ + + P ++DWR + + P +Q
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR---YPASFDWRDQGMVSPVKNQ 134
Query: 761 AACGSCWAFSIAGMLEGQYAIKTGKLVE--FSKSQLVECAKQCSGCDGCFFEPSIEYTHQ 818
+CGS WAFS G +E Q I G + S+ QLV+C GC G + + Y Q
Sbjct: 135 GSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQ 194
Query: 819 -AGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVL 876
G++SE YPY+ A+G C YD ++V +G +L + ++ GP++V
Sbjct: 195 NGGIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVA 251
Query: 877 LNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGF 935
++D Y+G + TC HAVL+VGYG ++ YWLV+NSWG +G+
Sbjct: 252 FDADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGY 309
Query: 936 FKIER-GNNACGIEQIAGYATI 956
FKI R NN CGI +A T+
Sbjct: 310 FKIARNANNHCGIAGVASVPTL 331
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 11/220 (5%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVE--FSKSQLVECAKQ 69
P ++DWR + + P +Q CGS WAFS G +E Q I G + S+ QLV+C
Sbjct: 117 PASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPN 176
Query: 70 CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFN 127
GC G + + Y Q G++SE YPY+ A+G C YD ++V +G +L
Sbjct: 177 ALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGP 233
Query: 128 GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
+ ++ GP++V ++D Y+G + TC HAVL+VGYG ++
Sbjct: 234 DENMLADMVATKGPVAVAFDADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYGNENGQ 291
Query: 187 PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATI 225
YWLV+NSWG +G+FKI R NN CGI +A T+
Sbjct: 292 DYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 145/323 (44%), Gaps = 28/323 (8%)
Query: 288 ILETFKAFIVKRGRQYANDEE-------IKERFEYFKQDGHKKHE-----RYGTSEFSDR 335
+ E ++ F R Y N +E +++ E F++ K + G + F+D
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 336 SPEEILCKT-GFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQ 394
+PEE+ T G ++ + + P ++DWR + + P +Q
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR---YPASFDWRDQGMVSPVKNQ 134
Query: 395 AACGSCWAFSIAGMLEGQYAIKTGKLVE--FSKSQLVECAKQCSGCGGCDGLEQPIEYTH 452
+CGS WAFS G +E Q I G + S+ QLV+C GC G + Y
Sbjct: 135 GSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSG-GWMNDAFTYVA 193
Query: 453 Q-AGLESEKDYPYRNGNGEKFKCAYDKSKVKL-FTGKDFLYFNGSETMKKILYKYGPLSV 510
Q G++SE YPY +G C YD ++V +G +L + ++ GP++V
Sbjct: 194 QNGGIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAV 250
Query: 511 GLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEG 569
++ Y+G + TC HAVL+VGYG ++ YWL +NSWG +G
Sbjct: 251 AFDADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDG 308
Query: 570 FFKIER-GNNACGIEQIAGYATI 591
+FKI R NN CGI +A T+
Sbjct: 309 YFKIARNANNHCGIAGVASVPTL 331
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAG 1020
+ TC HAVL+VGYG ++ YWLV+NSWG +G+FKI R NN CGI +A
Sbjct: 268 NPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVAS 327
Query: 1021 YATI 1024
T+
Sbjct: 328 VPTL 331
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 117/226 (51%), Gaps = 16/226 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+P + DWRKK P +Q CGSCWAFS G LEGQ KTGKLV S+ LV+C++
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 70 -CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAY-DKSKVKLFTGKDFLHF 126
GC+G F + +Y + GL+SE+ YPY + C Y ++ V TG +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 127 NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--- 181
+ + K + GP+SV +++ Y + D CS +L H VL+VGYG
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEG 175
Query: 182 -KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
DN YWLV+NSWGP G+ KI + NN CGI A Y +
Sbjct: 176 ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 117/226 (51%), Gaps = 16/226 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+P + DWRKK P +Q CGSCWAFS G LEGQ KTGKLV S+ LV+C++
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 801 -CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAY-DKSKVKLFTGKDFLHF 857
GC+G F + +Y + GL+SE+ YPY + C Y ++ V TG +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 858 NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--- 912
+ + K + GP+SV +++ Y + D CS +L H VL+VGYG
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEG 175
Query: 913 -KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
DN YWLV+NSWGP G+ KI + NN CGI A Y +
Sbjct: 176 ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 117/227 (51%), Gaps = 17/227 (7%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P + DWRKK P +Q CGSCWAFS G LEGQ KTGKLV S+ LV+C++
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRP- 59
Query: 436 SGCGGCDG--LEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAY-DKSKVKLFTGKDFLY 491
G GC+G + + +Y + GL+SE+ YPY C Y ++ V TG +
Sbjct: 60 QGNQGCNGGFMARAFQYVKENGGLDSEESYPYV---AVDEICKYRPENSVAQDTGFTVVA 116
Query: 492 FNGSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 547
+ + K + GP+SV +++ FY + D CS +L H VL+VGYG
Sbjct: 117 PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFE 174
Query: 548 --KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
D+ YWL +NSWGP G+ KI + NN CGI A Y +
Sbjct: 175 GANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 929 IGPDEGFFKIERGNNACGIEQIAGYATIDVVKN---------------DETCSPYDLGHA 973
+ D GF + G ++ +A I V + + CS +L H
Sbjct: 106 VAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHG 165
Query: 974 VLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 1024
VL+VGYG D+ YWLV+NSWGP G+ KI + NN CGI A Y +
Sbjct: 166 VLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 6/215 (2%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
PD+ D+RKK P +Q CGSCWAFS G LEGQ TG L+ + LV+C +
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEN 60
Query: 71 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 128
GC G + + +Y + G++SE YPY G+ C Y+ + K G +
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
+K+ + GP+SV +++ L + DE CS L HAVL VGYG Q +
Sbjct: 118 EAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKH 177
Query: 189 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 222
W+++NSWG + G+ + R NNACGI +A +
Sbjct: 178 WIIKNSWGESWGNAGYILMARNKNNACGIANLASF 212
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 6/215 (2%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
PD+ D+RKK P +Q CGSCWAFS G LEGQ TG L+ + LV+C +
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEN 60
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 859
GC G + + +Y + G++SE YPY G+ C Y+ + K G +
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
+K+ + GP+SV +++ L + DE CS L HAVL VGYG Q +
Sbjct: 118 EAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKH 177
Query: 920 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 953
W+++NSWG + G+ + R NNACGI +A +
Sbjct: 178 WIIKNSWGESWGNAGYILMARNKNNACGIANLASF 212
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 110/216 (50%), Gaps = 7/216 (3%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
PD+ D+RKK P +Q CGSCWAFS G LEGQ TG L+ + LV+C +
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEN 60
Query: 436 SGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTGKDFLYFN 493
GCGG + +Y + G++SE YPY G+ C Y+ + K G +
Sbjct: 61 DGCGG-GYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEG 116
Query: 494 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
+K+ + GP+SV +++ L F + DE CS L HAVL VGYG Q
Sbjct: 117 NEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNK 176
Query: 554 YWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 588
+W+ +NSWG + G+ + R NNACGI +A +
Sbjct: 177 HWIIKNSWGESWGNAGYILMARNKNNACGIANLASF 212
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 924 NSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV---------------VKNDETCSPY 968
N G G+ +I GN A +A + V V DE CS
Sbjct: 99 NPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSD 158
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 1021
L HAVL VGYG Q +W+++NSWG + G+ + R NNACGI +A +
Sbjct: 159 ALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANLASF 212
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
P++WDW KK V Q CGS WAFS G +E +AI TG LV S+ +L++C +
Sbjct: 2 APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61
Query: 71 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGE------KFKCAYDKSKVKLFTGKDF 123
GC + S E+ G+ SE DYPYK +G+ + K D V++ + +
Sbjct: 62 EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNEST 121
Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 183
S +L + P+SV +++ H Y+G I SPY + H VL+VGYG +
Sbjct: 122 ESEAESSLQSFVLEQ--PISVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSE 178
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIER--GN--NACGIEQIAGYATID 226
D + YW+ +NSWG +G+ +I+R GN CG+ A Y I+
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
P++WDW KK V Q CGS WAFS G +E +AI TG LV S+ +L++C +
Sbjct: 2 APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGE------KFKCAYDKSKVKLFTGKDF 854
GC + S E+ G+ SE DYPYK +G+ + K D V++ + +
Sbjct: 62 EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNEST 121
Query: 855 LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 914
S +L + P+SV +++ H Y+G I SPY + H VL+VGYG +
Sbjct: 122 ESEAESSLQSFVLEQ--PISVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSE 178
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIER--GN--NACGIEQIAGYATID 957
D + YW+ +NSWG +G+ +I+R GN CG+ A Y I+
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 17/229 (7%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P++WDW KK V Q CGS WAFS G +E +AI TG LV S+ +L++C +
Sbjct: 2 APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61
Query: 436 SGCGGCDGLE-QPIEY-THQAGLESEKDYPYRNGNGE------KFKCAYDKSKVKLFTGK 487
GC +G Q E+ G+ SE DYPY+ +G+ + K D V++ + +
Sbjct: 62 EGC--YNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNE 119
Query: 488 DFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 547
S +L + P+SV +++ HFY+G I SPY + H VL+VGYG
Sbjct: 120 STESEAESSLQSFVLEQ--PISVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYG 176
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIER--GN--NACGIEQIAGYATID 592
+D + YW+A+NSWG +G+ +I+R GN CG+ A Y I+
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 966 SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GN--NACGIEQIAGY 1021
SPY + H VL+VGYG +D + YW+ +NSWG +G+ +I+R GN CG+ A Y
Sbjct: 162 SPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASY 221
Query: 1022 ATID 1025
I+
Sbjct: 222 PIIE 225
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 13/227 (5%)
Query: 5 VEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV 64
V P+ + DWR N DQ CGS W+FS G +EGQ A++ G+L S+ L+
Sbjct: 110 VSSKKPLAASVDWRS-NAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLI 168
Query: 65 ECAKQ--CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGK 121
+C+ +GCDG + + + Y H G+ SE YPY+ A G+ C +D S+ V +G
Sbjct: 169 DCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYE-AQGDY--CRFDSSQSVTTLSGY 225
Query: 122 DFLHFNGSETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGY 180
L ++ + + GP++V ++ +D + Y+G D+TC+ DL H VL+VGY
Sbjct: 226 YDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGY 283
Query: 181 GKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYATI 225
G + YW+++NSWG + G+++ R GNN CGI A Y +
Sbjct: 284 GSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAASYPAL 329
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 13/222 (5%)
Query: 741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 800
P+ + DWR N DQ CGS W+FS G +EGQ A++ G+L S+ L++C+
Sbjct: 115 PLAASVDWRS-NAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSS 173
Query: 801 --CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGKDFLHF 857
+GCDG + + + Y H G+ SE YPY+ A G+ C +D S+ V +G L
Sbjct: 174 YGNAGCDGGWMDSAFSYIHDYGIMSESAYPYE-AQGDY--CRFDSSQSVTTLSGYYDLPS 230
Query: 858 NGSETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
++ + + GP++V ++ +D + Y+G D+TC+ DL H VL+VGYG +
Sbjct: 231 GDENSLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDNG 288
Query: 917 IPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYATI 956
YW+++NSWG + G+++ R GNN CGI A Y +
Sbjct: 289 QDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAASYPAL 329
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Query: 375 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 434
P+ + DWR N DQ CGS W+FS G +EGQ A++ G+L S+ L++C+
Sbjct: 115 PLAASVDWRS-NAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSS 173
Query: 435 CSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSK-VKLFTGKDFLY 491
G GCDG ++ Y H G+ SE YPY + C +D S+ V +G L
Sbjct: 174 Y-GNAGCDGGWMDSAFSYIHDYGIMSESAYPYE---AQGDYCRFDSSQSVTTLSGYYDLP 229
Query: 492 FNGSETMKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
++ + + GP++V ++ + + FY+G D+TC+ DL H VL+VGYG +
Sbjct: 230 SGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDN 287
Query: 551 DIPYWLARNSWGPIGPDEGFFKIER--GNNACGIEQIAGYATI 591
YW+ +NSWG + G+++ R GNN CGI A Y +
Sbjct: 288 GQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAASYPAL 329
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIA 1019
D+TC+ DL H VL+VGYG + YW+++NSWG + G+++ R GNN CGI A
Sbjct: 266 DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAA 324
Query: 1020 GYATI 1024
Y +
Sbjct: 325 SYPAL 329
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 116/226 (51%), Gaps = 16/226 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+P + DWRKK P +Q CGS WAFS G LEGQ KTGKLV S+ LV+C++
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 70 -CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAY-DKSKVKLFTGKDFLHF 126
GC+G F + +Y + GL+SE+ YPY + C Y ++ V TG +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 127 NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--- 181
+ + K + GP+SV +++ Y + D CS +L H VL+VGYG
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEG 175
Query: 182 -KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
DN YWLV+NSWGP G+ KI + NN CGI A Y +
Sbjct: 176 ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 116/226 (51%), Gaps = 16/226 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+P + DWRKK P +Q CGS WAFS G LEGQ KTGKLV S+ LV+C++
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 801 -CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAY-DKSKVKLFTGKDFLHF 857
GC+G F + +Y + GL+SE+ YPY + C Y ++ V TG +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 858 NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--- 912
+ + K + GP+SV +++ Y + D CS +L H VL+VGYG
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEG 175
Query: 913 -KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
DN YWLV+NSWGP G+ KI + NN CGI A Y +
Sbjct: 176 ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P + DWRKK P +Q CGS WAFS G LEGQ KTGKLV S+ LV+C++
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRP- 59
Query: 436 SGCGGCDG--LEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAY-DKSKVKLFTGKDFLY 491
G GC+G + + +Y + GL+SE+ YPY C Y ++ V TG +
Sbjct: 60 QGNQGCNGGFMARAFQYVKENGGLDSEESYPYV---AVDEICKYRPENSVAQDTGFTVVA 116
Query: 492 FNGSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 547
+ + K + GP+SV +++ FY + D CS +L H VL+VGYG
Sbjct: 117 PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFE 174
Query: 548 --KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
D+ YWL +NSWGP G+ KI + NN CGI A Y +
Sbjct: 175 GANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 929 IGPDEGFFKIERGNNACGIEQIAGYATIDVVKN---------------DETCSPYDLGHA 973
+ D GF + G ++ +A I V + + CS +L H
Sbjct: 106 VAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHG 165
Query: 974 VLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 1024
VL+VGYG D+ YWLV+NSWGP G+ KI + NN CGI A Y +
Sbjct: 166 VLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 119
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 120 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 178
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 179 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 220
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 119
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 120 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 178
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 179 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 220
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 119
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 120 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 178
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 179 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 220
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 164 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 220
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 117
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 162 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 161 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 117
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 162 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 161 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 161 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCRKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG ++G+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCRKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG ++G+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCRKYTEL 116
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG ++G+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG ++G+ ++ R N CGI Y I
Sbjct: 161 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDLKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD---LKCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD---LKCQYD-SKYRAATCSKYTEL 116
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 161 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 99 LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 158
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ + KC YD SK + T + L
Sbjct: 159 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 214
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 215 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 273
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 274 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 99 LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 158
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 159 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 214
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 215 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 273
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 274 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 99 LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 158
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 159 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 214
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 215 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 273
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 274 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 259 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD S + T + + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SAYRAATCRKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG ++G+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD S + T + + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SAYRAATCRKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG ++G+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD S + T + + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SAYRAATCRKYTEL 116
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG ++G+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG ++G+ ++ R N CGI Y I
Sbjct: 161 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 117
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 119 bits (298), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 162 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 39 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 98
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 99 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 154
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 155 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 211
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 212 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 39 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 98
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 99 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 154
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 155 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 211
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 212 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 39 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 97
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 98 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDI 153
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 154 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 213
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 214 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CGI A
Sbjct: 194 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 253
Query: 1020 GYATI 1024
Y T+
Sbjct: 254 SYPTV 258
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 161 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
G GC+G + +Y G++S+ YPY+ KC YD SK + T + L
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 118
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+ + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG +
Sbjct: 119 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 177
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 178 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 219
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD+ DWR+K Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 118
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 119 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 177
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 178 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 219
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD+ DWR+K Q CG+ WAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 70 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
GC+G F + +Y G++S+ YPYK + KC YD SK + T + L
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 118
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ + +K+ + GP+SV +++ + + +C+ ++ H VL+VGYG +
Sbjct: 119 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 177
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 225
YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 178 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 219
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 163 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 59
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDI 115
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 116 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 176 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CGI A
Sbjct: 156 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
Y T+
Sbjct: 216 SYPTV 220
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 2 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 61
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 62 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 117
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 174
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 2 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 61
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 62 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 117
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 174
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 2 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 60
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDI 116
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 117 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 177 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CGI A
Sbjct: 157 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 216
Query: 1020 GYATI 1024
Y T+
Sbjct: 217 SYPTV 221
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 59
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDI 115
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 116 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 176 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CGI A
Sbjct: 156 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
Y T+
Sbjct: 216 SYPTV 220
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 2 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 61
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 62 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 117
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 174
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 2 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 61
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 62 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 117
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 174
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 2 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 60
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDI 116
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 117 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 177 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CGI A
Sbjct: 157 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 216
Query: 1020 GYATI 1024
Y T+
Sbjct: 217 SYPTV 221
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 59
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDI 115
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 116 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 176 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CGI A
Sbjct: 156 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
Y T+
Sbjct: 216 SYPTV 220
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 97 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 156
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 157 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 212
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 213 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 269
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 270 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 97 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 156
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 157 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 212
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 213 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 269
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 270 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 97 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 155
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 156 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDI 211
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 212 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 271
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 272 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CGI A
Sbjct: 252 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 311
Query: 1020 GYATI 1024
Y T+
Sbjct: 312 SYPTV 316
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 59
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDI 115
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 116 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 176 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CGI A
Sbjct: 156 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
Y T+
Sbjct: 216 SYPTV 220
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWRKK P +Q CGSCWAFS +E I+TG L+ S+ QLV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 71 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
GC G F + +Y G+++E +YPYK G C K V++ K H N +
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP---CRAAKKVVRIDGYKGVPHCNEN 117
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
K + + +++ +S Y T L H V++VGY K YW
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGT----KLNHGVVIVGYWKD----YW 169
Query: 190 LVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 224
+VRNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 170 IVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWRKK P +Q CGSCWAFS +E I+TG L+ S+ QLV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
GC G F + +Y G+++E +YPYK G C K V++ K H N +
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP---CRAAKKVVRIDGYKGVPHCNEN 117
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
K + + +++ +S Y T L H V++VGY K YW
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGT----KLNHGVVIVGYWKD----YW 169
Query: 921 LVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
+VRNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 170 IVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 103/217 (47%), Gaps = 13/217 (5%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWRKK P +Q CGSCWAFS +E I+TG L+ S+ QLV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G + G+++E +YPY+ G C K V++ K + N +
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP---CRAAKKVVRIDGYKGVPHCNEN 117
Query: 496 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 555
K + + +++ +S Y T L H V++VGY K YW
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGT----KLNHGVVIVGYWKD----YW 169
Query: 556 LARNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 590
+ RNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 170 IVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 970 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 1023
L H V++VGY K YW+VRNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 155 LNHGVVIVGYWKD----YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 93 APRSVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPE 152
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 153 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 208
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 209 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 265
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ D YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 266 STESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 93 APRSVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPE 152
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 153 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 208
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 209 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 265
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ D YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 266 STESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 93 APRSVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 151
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 152 EGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDI 207
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 208 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 267
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ D YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 268 ESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + D YWLV+NSWG G+ K+ + N CGI A
Sbjct: 248 CSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 307
Query: 1020 GYATI 1024
Y T+
Sbjct: 308 SYPTV 312
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ D+ YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ D+ YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 STESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 59
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDI 115
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 116 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ DD YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 176 ESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965 CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
CS D+ H VL+VGYG + DD YWLV+NSWG G+ K+ + N CGI A
Sbjct: 156 CSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
Y T+
Sbjct: 216 SYPTV 220
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWR K P +Q CGSCWAFS +E I+TG L+ S+ QLV+C+K+
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 71 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
GC G +F+ + +Y G+++E +YPYK G C K V++ K N +
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP---CRAAKKVVRIDGCKGVPQCNEN 117
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
+ + +++ +S Y G T L H V++VGYGK YW
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGT----KLNHGVVIVGYGKD----YW 169
Query: 190 LVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 224
+VRNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 170 IVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWR K P +Q CGSCWAFS +E I+TG L+ S+ QLV+C+K+
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
GC G +F+ + +Y G+++E +YPYK G C K V++ K N +
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP---CRAAKKVVRIDGCKGVPQCNEN 117
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
+ + +++ +S Y G T L H V++VGYGK YW
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGT----KLNHGVVIVGYGKD----YW 169
Query: 921 LVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
+VRNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 170 IVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 15/218 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWR K P +Q CGSCWAFS +E I+TG L+ S+ QLV+C+K+
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 436 SGCGGCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
GC G ++ +Y G+++E +YPY+ G C K V++ K N
Sbjct: 61 HGCKG-GYFDRAYQYIIANGGIDTEANYPYKAFQGP---CRAAKKVVRIDGCKGVPQCNE 116
Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
+ + + +++ +S Y G T L H V++VGYGK Y
Sbjct: 117 NALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGT----KLNHGVVIVGYGKD----Y 168
Query: 555 WLARNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 590
W+ RNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 169 WIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 970 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 1023
L H V++VGYGK YW+VRNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 155 LNHGVVIVGYGKD----YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 114 bits (285), Expect = 3e-25, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 72 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 127
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
++ + L GP++V +++ Y G + +C L H VLLVGY +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDSAAVP 176
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
YW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 114 bits (284), Expect = 4e-25, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 858
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
++ + L GP++V +++ Y G + +C L H VLLVGY +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDSAAVP 176
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
YW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 109 bits (272), Expect = 8e-24, Method: Composition-based stats.
Identities = 66/217 (30%), Positives = 97/217 (44%), Gaps = 6/217 (2%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 437 GCGG--CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
GC G + + I + + +E YPY +G G C V
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
+ L GP++V +++ Y G + +C L H VLLVGY +PY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDSAAVPY 177
Query: 555 WLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
W+ +NSW +EG+ +I +G+N C +++ A A +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
+C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A
Sbjct: 154 SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 1024 I 1024
+
Sbjct: 214 V 214
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 113 bits (283), Expect = 5e-25, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 72 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 127
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
++ + L GP++V +++ Y G + +C L H VLLVGY +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEALDHGVLLVGYNDSAAVP 176
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
YW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 113 bits (283), Expect = 5e-25, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 858
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
++ + L GP++V +++ Y G + +C L H VLLVGY +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEALDHGVLLVGYNDSAAVP 176
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
YW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 108 bits (271), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/217 (30%), Positives = 97/217 (44%), Gaps = 6/217 (2%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 437 GCGG--CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
GC G + + I + + +E YPY +G G C V
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
+ L GP++V +++ Y G + +C L H VLLVGY +PY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEALDHGVLLVGYNDSAAVPY 177
Query: 555 WLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
W+ +NSW +EG+ +I +G+N C +++ A A +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
+C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A
Sbjct: 154 SCVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 1024 I 1024
+
Sbjct: 214 V 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 68
+PD DWR DQ CGSCWAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 69 QCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 125
GCDG F ++ + G+ +E +YPY E+ +C D + K + + +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENVP 117
Query: 126 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQ 183
+N ++ + Y P+SV L + YN T C + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-AYQPVSVALEA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTE 172
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 222
I YW+V+NSWG +EG+ +I+R G CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 799
+PD DWR DQ CGSCWAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 800 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
GCDG F ++ + G+ +E +YPY E+ +C D + K + + +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENVP 117
Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQ 914
+N ++ + Y P+SV L + YN T C + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-AYQPVSVALEA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTE 172
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 953
I YW+V+NSWG +EG+ +I+R G CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 21/224 (9%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 433
+PD DWR DQ CGSCWAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 434 QCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSK---VKLFTGK 487
GC G DG + I + G+ +E +YPY E+ +C D + V + T +
Sbjct: 61 NTRGCDGGFMTDGFQFII---NNGGINTEANYPY---TAEEGQCNLDLQQEKYVSIDTYE 114
Query: 488 DFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 547
+ Y N E + Y P+SV L + +F + + + D HAV +VGYG
Sbjct: 115 NVPYNN--EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD--HAVTIVGYG 170
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 588
+ I YW+ +NSWG +EG+ +I+R G CGI + A Y
Sbjct: 171 TEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
HAV +VGYG + I YW+V+NSWG +EG+ +I+R G CGI + A Y
Sbjct: 162 HAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 21/236 (8%)
Query: 742 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 796
+P++WDWR N P +Q +CGSC++F+ GMLE + I T + S ++V
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 797 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 855
C+ GCDG F + + +Y G+ E +PY + C ++ ++ ++ + +
Sbjct: 266 CSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDA---PCKPKENCLRYYSSEYYY 322
Query: 856 HFN-----GSETMKKILYKYGPLSVL--LNSDLIHDYNGTPIRKN-DETCSPYDL-GHAV 906
MK L K+GP++V ++ D +H ++G + +P++L HAV
Sbjct: 323 VGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAV 382
Query: 907 LLVGYGKQ--DNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVK 960
LLVGYGK + YW+V+NSWG + G+F+I RG + C IE IA A I + K
Sbjct: 383 LLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA-MAAIPIPK 437
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 11 VPDAWDWRKK---NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 65
+P++WDWR N P +Q CGSC++F+ GMLE + I T + S ++V
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 66 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 124
C+ GCDG F + + +Y G+ E +PY + C ++ ++ ++ + +
Sbjct: 266 CSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDA---PCKPKENCLRYYSSEYYY 322
Query: 125 HFN-----GSETMKKILYKYGPLSVL--LNSDLIHDYNGTPIRKN-DETCSPYDL-GHAV 175
MK L K+GP++V ++ D +H ++G + +P++L HAV
Sbjct: 323 VGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAV 382
Query: 176 LLVGYGKQ--DNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 220
LLVGYGK + YW+V+NSWG + G+F+I RG + C IE IA
Sbjct: 383 LLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 429
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 19/227 (8%)
Query: 376 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 430
+P++WDWR N P +Q +CGSC++F+ GMLE + I T + S ++V
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 431 CAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFL 490
C+ GC G +Y G+ E +PY + C ++ ++ ++ + +
Sbjct: 266 CSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDA---PCKPKENCLRYYSSEYYY 322
Query: 491 YFN-----GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKN-DETCSPYDL-GHAV 541
MK L K+GP++V H +H+++G + +P++L HAV
Sbjct: 323 VGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAV 382
Query: 542 LLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIA 586
LLVGYGK + YW+ +NSWG + G+F+I RG + C IE IA
Sbjct: 383 LLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 429
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 966 SPYDL-GHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 1019
+P++L HAVLLVGYGK + YW+V+NSWG + G+F+I RG + C IE IA
Sbjct: 373 NPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 429
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 112 bits (280), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P A DWR + DQ CGSCWAFS G +E Q+ + L ++ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 72 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 127
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
++ + L GP++V +++ Y G + +C L H VLLVGY +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVP 176
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
YW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 112 bits (279), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P A DWR + DQ CGSCWAFS G +E Q+ + L ++ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 858
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
++ + L GP++V +++ Y G + +C L H VLLVGY +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVP 176
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
YW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 107 bits (267), Expect = 3e-23, Method: Composition-based stats.
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 6/217 (2%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P A DWR + DQ CGSCWAFS G +E Q+ + L ++ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 437 GCGG--CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
GC G + + I + + +E YPY +G G C V
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
+ L GP++V +++ Y G + +C L H VLLVGY +PY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVPY 177
Query: 555 WLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
W+ +NSW +EG+ +I +G+N C +++ A A +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
+C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A
Sbjct: 154 SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 1024 I 1024
+
Sbjct: 214 V 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 112 bits (280), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P A DWR + DQ CGSCWAFS G +E Q+ + L ++ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 72 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 127
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
++ + L GP++V +++ Y G + +C L H VLLVGY +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVP 176
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
YW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 112 bits (279), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P A DWR + DQ CGSCWAFS G +E Q+ + L ++ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 858
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
++ + L GP++V +++ Y G + +C L H VLLVGY +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVP 176
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
YW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 107 bits (267), Expect = 3e-23, Method: Composition-based stats.
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 6/217 (2%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P A DWR + DQ CGSCWAFS G +E Q+ + L ++ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 437 GCGG--CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
GC G + + I + + +E YPY +G G C V
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
+ L GP++V +++ Y G + +C L H VLLVGY +PY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVPY 177
Query: 555 WLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
W+ +NSW +EG+ +I +G+N C +++ A A +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
+C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A
Sbjct: 154 SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 1024 I 1024
+
Sbjct: 214 V 214
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 30/236 (12%)
Query: 742 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 796
+P +WDWR N P +QA+CGSC++F+ GMLE + I T + S ++V
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 797 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 855
C++ GC+G F + + +Y GL E +PY G C + + ++ +
Sbjct: 267 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFRYYSSE--Y 321
Query: 856 HFNG-------SETMKKILYKYGPLSVLLN--SDLIH----DYNGTPIRKNDETCSPYDL 902
H+ G MK L +GP++V D +H Y+ T +R + +P++L
Sbjct: 322 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLR---DPFNPFEL 378
Query: 903 -GHAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 955
HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE IA AT
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 30/236 (12%)
Query: 11 VPDAWDWRKK---NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 65
+P +WDWR N P +QA CGSC++F+ GMLE + I T + S ++V
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 66 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 124
C++ GC+G F + + +Y GL E +PY G C + + ++ +
Sbjct: 267 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFRYYSSE--Y 321
Query: 125 HFNG-------SETMKKILYKYGPLSVLLN--SDLIH----DYNGTPIRKNDETCSPYDL 171
H+ G MK L +GP++V D +H Y+ T +R + +P++L
Sbjct: 322 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLR---DPFNPFEL 378
Query: 172 -GHAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 224
HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE IA AT
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 27/235 (11%)
Query: 376 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 430
+P +WDWR N P +QA+CGSC++F+ GMLE + I T + S ++V
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 431 CAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFL 490
C++ GC G +Y GL E +PY G C + + ++ ++
Sbjct: 267 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFRYYS-SEYH 322
Query: 491 YFNG------SETMKKILYKYGPLSVGLNSH--LIHF----YNGTPIRKNDETCSPYDL- 537
Y G MK L +GP++V + +H+ Y+ T +R + +P++L
Sbjct: 323 YVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLR---DPFNPFELT 379
Query: 538 GHAVLLVGYG--KQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 590
HAVLLVGYG + YW+ +NSWG + G+F+I RG + C IE IA AT
Sbjct: 380 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 966 SPYDL-GHAVLLVGYG--KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 1022
+P++L HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE IA A
Sbjct: 374 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 433
Query: 1023 T 1023
T
Sbjct: 434 T 434
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 22/222 (9%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P + DWR K P +Q ACGS WAFS +EG I TG L+E S+ +LV+C K
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC-AYDKSKVKL-FTGKDFLHFNGS 860
GC G + S++Y G+ + K YPY+ +++KC A DK K+ TG + N
Sbjct: 62 GCKGGYQTTSLQYVANNGVHTSKVYPYQ---AKQYKCRATDKPGPKVKITGYKRVPSNXE 118
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKN-----DETCSPYDLGHAVLLVGYGKQD 915
+ L PLSVL+ + G P + D C L HAV VGYG D
Sbjct: 119 TSFLGALANQ-PLSVLVEA------GGKPFQLYKSGVFDGPCGT-KLDHAVTAVGYGTSD 170
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGY 953
Y +++NSWGP ++G+ +++R GN+ CG+ + + Y
Sbjct: 171 GKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P + DWR K P +Q CGS WAFS +EG I TG L+E S+ +LV+C K
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 72 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC-AYDKSKVKL-FTGKDFLHFNGS 129
GC G + S++Y G+ + K YPY+ +++KC A DK K+ TG + N
Sbjct: 62 GCKGGYQTTSLQYVANNGVHTSKVYPYQ---AKQYKCRATDKPGPKVKITGYKRVPSNXE 118
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKN-----DETCSPYDLGHAVLLVGYGKQD 184
+ L PLSVL+ + G P + D C L HAV VGYG D
Sbjct: 119 TSFLGALANQ-PLSVLVEA------GGKPFQLYKSGVFDGPCGT-KLDHAVTAVGYGTSD 170
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGY 222
Y +++NSWGP ++G+ +++R GN+ CG+ + + Y
Sbjct: 171 GKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 25/224 (11%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P + DWR K P +Q ACGS WAFS +EG I TG L+E S+ +LV+C K
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 437 GCGGCDGLE-QPIEYTHQAGLESEKDYPYRNGNGEKFKC-AYDKSKVKL-FTGKDFLYFN 493
GC G G + ++Y G+ + K YPY+ +++KC A DK K+ TG + N
Sbjct: 62 GCKG--GYQTTSLQYVANNGVHTSKVYPYQ---AKQYKCRATDKPGPKVKITGYKRVPSN 116
Query: 494 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKN-----DETCSPYDLGHAVLLVGYGK 548
+ L PLSV + + G P + D C L HAV VGYG
Sbjct: 117 XETSFLGALANQ-PLSVLVEA------GGKPFQLYKSGVFDGPCGT-KLDHAVTAVGYGT 168
Query: 549 QDDIPYWLARNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGY 588
D Y + +NSWGP ++G+ +++R GN+ CG+ + + Y
Sbjct: 169 SDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 970 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGY 1021
L HAV VGYG D Y +++NSWGP ++G+ +++R GN+ CG+ + + Y
Sbjct: 157 LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 28/217 (12%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P++ DWR+K P +Q CGSCWAFS +EG I TG+L+ S+ +L++C ++
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC-AYDKSKVKLF-TGKDFLHFNGS 860
GCDG + S++Y G+ +E++YPY+ G +C A DK K++ TG ++ N
Sbjct: 62 GCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDE 118
Query: 861 ETMKKILYKYGPLSVLLNS--DLIHDYNG----TPIRKNDETCSPYDLGHAVLLVGYGKQ 914
++ + + P+SV+ +S Y G P N + HAV VGYGK
Sbjct: 119 ISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGPCGTNTD--------HAVTAVGYGKT 169
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGI 947
Y L++NSWGP ++G+ +I+R + CG+
Sbjct: 170 ----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 28/217 (12%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P++ DWR+K P +Q CGSCWAFS +EG I TG+L+ S+ +L++C ++
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 72 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC-AYDKSKVKLF-TGKDFLHFNGS 129
GCDG + S++Y G+ +E++YPY+ G +C A DK K++ TG ++ N
Sbjct: 62 GCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDE 118
Query: 130 ETMKKILYKYGPLSVLLNS--DLIHDYNG----TPIRKNDETCSPYDLGHAVLLVGYGKQ 183
++ + + P+SV+ +S Y G P N + HAV VGYGK
Sbjct: 119 ISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGPCGTNTD--------HAVTAVGYGKT 169
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGI 216
Y L++NSWGP ++G+ +I+R + CG+
Sbjct: 170 ----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 33/220 (15%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P++ DWR+K P +Q CGSCWAFS +EG I TG+L+ S+ +L++C ++
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 437 GCGGCDGLEQ--PIEYTHQAGLESEKDYPYRNGNGEKFKC-AYDKSKVKLF-TGKDFLYF 492
GCDG Q ++Y G+ +E++YPY G +C A DK K++ TG ++
Sbjct: 62 ---GCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPA 115
Query: 493 NGSETMKKILYKYGPLSVGLNS--HLIHFYNG----TPIRKNDETCSPYDLGHAVLLVGY 546
N ++ + + P+SV +S FY G P N + HAV VGY
Sbjct: 116 NDEISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGPCGTNTD--------HAVTAVGY 166
Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGI 582
GK Y L +NSWGP ++G+ +I+R + CG+
Sbjct: 167 GKT----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 8/48 (16%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGI 1015
HAV VGYGK Y L++NSWGP ++G+ +I+R + CG+
Sbjct: 159 HAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 10/217 (4%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+PD+ DWR+ P +Q CGSCWAFS +EG I TG L+ S+ QLV+C
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
GC G + P+ ++ + G+ SE+ YPY+ +G + V + + ++ N
Sbjct: 63 HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG-ICNSTVNAPVVSIDSYENVPSHNEQ 121
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
K + + P+SV +++ D+ +C+ HA+ +VGYG +++ +W
Sbjct: 122 SLQKAVANQ--PVSVTMDA-AGRDFQLYRSGIFTGSCN-ISANHALTVVGYGTENDKDFW 177
Query: 921 LVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 953
+V+NSWG + G+ + ER + CGI + A Y
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 10/217 (4%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+PD+ DWR+ P +Q CGSCWAFS +EG I TG L+ S+ QLV+C
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 71 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
GC G + P+ ++ + G+ SE+ YPY+ +G + V + + ++ N
Sbjct: 63 HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG-ICNSTVNAPVVSIDSYENVPSHNEQ 121
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
K + + P+SV +++ D+ +C+ HA+ +VGYG +++ +W
Sbjct: 122 SLQKAVANQ--PVSVTMDA-AGRDFQLYRSGIFTGSCN-ISANHALTVVGYGTENDKDFW 177
Query: 190 LVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 222
+V+NSWG + G+ + ER + CGI + A Y
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 15/220 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+ P +Q CGSCWAFS +EG I TG L+ S+ QLV+C
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 436 SGCGGCDGLEQPI--EYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
GC G G P + G+ SE+ YPYR +G + V + + ++ N
Sbjct: 63 HGCRG--GWMNPAFQFIVNNGGINSEETYPYRGQDG-ICNSTVNAPVVSIDSYENVPSHN 119
Query: 494 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCS-PYDLGHAVLLVGYGKQDDI 552
K + + P+SV +++ F R T S HA+ +VGYG ++D
Sbjct: 120 EQSLQKAVANQ--PVSVTMDAAGRDF---QLYRSGIFTGSCNISANHALTVVGYGTENDK 174
Query: 553 PYWLARNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 588
+W+ +NSWG + G+ + ER + CGI + A Y
Sbjct: 175 DFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 1021
HA+ +VGYG ++D +W+V+NSWG + G+ + ER + CGI + A Y
Sbjct: 161 HALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 69
VP + DWRKK DQ CGSCWAFS +EG IKT KLV S+ +LV+C Q
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 70 CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFT--GKDFLHF 126
GC+G + + E+ Q G+ +E +YPY+ +G C K + G + +
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPE 118
Query: 127 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE-----TCSPYDLGHAVLLVGYG 181
N + K + P+SV + D G+ + E +C +L H V +VGYG
Sbjct: 119 NDENALLKAVANQ-PVSVAI------DAGGSDFQFYSEGVFTGSCGT-ELDHGVAIVGYG 170
Query: 182 KQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 222
D YW V+NSWGP ++G+ ++ERG CGI A Y
Sbjct: 171 TTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 800
VP + DWRKK DQ CGSCWAFS +EG IKT KLV S+ +LV+C Q
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 801 CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFT--GKDFLHF 857
GC+G + + E+ Q G+ +E +YPY+ +G C K + G + +
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPE 118
Query: 858 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE-----TCSPYDLGHAVLLVGYG 912
N + K + P+SV + D G+ + E +C +L H V +VGYG
Sbjct: 119 NDENALLKAVANQ-PVSVAI------DAGGSDFQFYSEGVFTGSCGT-ELDHGVAIVGYG 170
Query: 913 KQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 953
D YW V+NSWGP ++G+ ++ERG CGI A Y
Sbjct: 171 TTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 107/224 (47%), Gaps = 20/224 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 434
VP + DWRKK DQ CGSCWAFS +EG IKT KLV S+ +LV+C Q
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 435 CSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFT--GKDFLY 491
GC G ++ E+ Q G+ +E +YPY +G C K + G + +
Sbjct: 62 NQGCNG-GLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVP 117
Query: 492 FNGSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 549
N + K + P+SV +++ FY+ + T +L H V +VGYG
Sbjct: 118 ENDENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFTGSCGT----ELDHGVAIVGYGTT 172
Query: 550 -DDIPYWLARNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 588
D YW +NSWGP ++G+ ++ERG CGI A Y
Sbjct: 173 IDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 969 DLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 1021
+L H V +VGYG D YW V+NSWGP ++G+ ++ERG CGI A Y
Sbjct: 159 ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 18/222 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 68
+PD DWR DQ CGS WAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 69 QCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 125
GCDG F ++ + G+ +E +YPY E+ +C D + K + + +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENVP 117
Query: 126 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQ 183
+N ++ + Y P+SV L + YN T C + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-AYQPVSVALEA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTE 172
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 222
I YW+V+NSWG +EG+ +I+R G CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 18/222 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 799
+PD DWR DQ CGS WAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 800 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
GCDG F ++ + G+ +E +YPY E+ +C D + K + + +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENVP 117
Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQ 914
+N ++ + Y P+SV L + YN T C + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-AYQPVSVALEA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTE 172
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 953
I YW+V+NSWG +EG+ +I+R G CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 433
+PD DWR DQ CGS WAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 434 QCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSK---VKLFTGK 487
GC G DG + I + G+ +E +YPY E+ +C D + V + T +
Sbjct: 61 NTRGCDGGFMTDGFQFII---NNGGINTEANYPY---TAEEGQCNLDLQQEKYVSIDTYE 114
Query: 488 DFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 547
+ Y N E + Y P+SV L + +F + + + D HAV +VGYG
Sbjct: 115 NVPYNN--EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD--HAVTIVGYG 170
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 588
+ I YW+ +NSWG +EG+ +I+R G CGI + A Y
Sbjct: 171 TEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
HAV +VGYG + I YW+V+NSWG +EG+ +I+R G CGI + A Y
Sbjct: 162 HAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 153/315 (48%), Gaps = 43/315 (13%)
Query: 652 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQD------GHKKHERY--GTSEFSDRSP 703
E +++ F+++++K + Y N +E RFE FK + +KK+ Y G + F+D S
Sbjct: 60 ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSN 119
Query: 704 EEILCK-TG-----FKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPA 757
+E K TG + +E +YE ++ D D +P+ DWR+K P
Sbjct: 120 DEFKEKYTGSIAGNYTTTELSYEEVLND------------GDVNIPEYVDWRQKGAVTPV 167
Query: 758 GDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTH 817
+Q +CGS WAFS +E I+TG L E+S+ +L++C ++ GC+G + +++
Sbjct: 168 KNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVA 227
Query: 818 QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNGSETMKKILYKYGPLSV 875
Q G+ YPY+ +++ + +K T + +N + I + P+SV
Sbjct: 228 QYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ--PVSV 283
Query: 876 LLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDE 933
+L + D+ + + P + HAV VGYG Y L+RNSWG +
Sbjct: 284 VLEA-AGKDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIRNSWGTGWGEN 335
Query: 934 GFFKIERGN-NACGI 947
G+ +I+RG N+ G+
Sbjct: 336 GYIRIKRGTGNSYGV 350
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 143/316 (45%), Gaps = 44/316 (13%)
Query: 286 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQD------GHKKHERY--GTSEFSDRSP 337
E +++ F+++++K + Y N +E RFE FK + +KK+ Y G + F+D S
Sbjct: 60 ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSN 119
Query: 338 EEILCK-TG-----FKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPA 391
+E K TG + +E +YE ++ D D +P+ DWR+K P
Sbjct: 120 DEFKEKYTGSIAGNYTTTELSYEEVLND------------GDVNIPEYVDWRQKGAVTPV 167
Query: 392 GDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT 451
+Q +CGS WAFS +E I+TG L E+S+ +L++C ++ GC G ++
Sbjct: 168 KNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPW-SALQLV 226
Query: 452 HQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLS 509
Q G+ YPY G + C + K D + +LY P+S
Sbjct: 227 AQYGIHYRNTYPYE---GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVS 282
Query: 510 VGLNSHLIHFYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPD 567
V L + F + + P + HAV VGYG Y L RNSWG +
Sbjct: 283 VVLEAAGKDF----QLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIRNSWGTGWGE 334
Query: 568 EGFFKIERGN-NACGI 582
G+ +I+RG N+ G+
Sbjct: 335 NGYIRIKRGTGNSYGV 350
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 4 EVEKDGPV--PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKS 61
EV DG V P+ DWR+K P +Q CGS WAFS +E I+TG L E+S+
Sbjct: 143 EVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQ 202
Query: 62 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG- 120
+L++C ++ GC+G + +++ Q G+ YPY+ +++ + +K T
Sbjct: 203 ELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDG 260
Query: 121 -KDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLL 177
+ +N + I + P+SV+L + D+ + + P + HAV
Sbjct: 261 VRQVQPYNEGALLYSIANQ--PVSVVLEA-AGKDFQ---LYRGGIFVGPCGNKVDHAVAA 314
Query: 178 VGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 216
VGYG Y L+RNSWG + G+ +I+RG N+ G+
Sbjct: 315 VGYGPN----YILIRNSWGTGWGENGYIRIKRGTGNSYGV 350
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 1015
HAV VGYG Y L+RNSWG + G+ +I+RG N+ G+
Sbjct: 310 HAVAAVGYGPN----YILIRNSWGTGWGENGYIRIKRGTGNSYGV 350
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 16/223 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 69
+P + DWR+K DQ CGSCWAFS +EG AI+TG LV S+ +L++C
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 70 CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG--EKFKCAYDKSKVKLFTGKDFLHF 126
GC G + + EY + GL +E YPY+ A G + A + V G +
Sbjct: 64 NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPA 123
Query: 127 NGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQ 183
N E + + + P+SV + + Y+ T +L H V +VGYG +
Sbjct: 124 NSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGVAE 178
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGY 222
D YW V+NSWGP ++G+ ++E+ + A CGI A Y
Sbjct: 179 DGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASY 221
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 16/223 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 800
+P + DWR+K DQ CGSCWAFS +EG AI+TG LV S+ +L++C
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 801 CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG--EKFKCAYDKSKVKLFTGKDFLHF 857
GC G + + EY + GL +E YPY+ A G + A + V G +
Sbjct: 64 NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPA 123
Query: 858 NGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQ 914
N E + + + P+SV + + Y+ T +L H V +VGYG +
Sbjct: 124 NSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGVAE 178
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGY 953
D YW V+NSWGP ++G+ ++E+ + A CGI A Y
Sbjct: 179 DGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASY 221
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 108/225 (48%), Gaps = 19/225 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P + DWR+K DQ CGSCWAFS +EG AI+TG LV S+ +L++C
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDC--DT 61
Query: 436 SGCGGCDG--LEQPIEYT-HQAGLESEKDYPYRNGNG--EKFKCAYDKSKVKLFTGKDFL 490
+ GC G ++ EY + GL +E YPYR G + A + V G +
Sbjct: 62 ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDV 121
Query: 491 YFNGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG- 547
N E + + + P+SV + + FY+ T +L H V +VGYG
Sbjct: 122 PANSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGV 176
Query: 548 KQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGY 588
+D YW +NSWGP ++G+ ++E+ + A CGI A Y
Sbjct: 177 AEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASY 221
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 969 DLGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGY 1021
+L H V +VGYG +D YW V+NSWGP ++G+ ++E+ + A CGI A Y
Sbjct: 164 ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASY 221
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 107 bits (268), Expect = 3e-23, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P DWR K +Q CGSCWAFS +E I+TG+L+ S+ +LV+C
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 71 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
GC+G + + +Y G++++++YPY G C + +V G + N
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS---CKPYRLRVVSINGFQRVTRNNE 117
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLG----HAVLLVGYGKQDN 185
++ + P+SV + + G P + G H V++VGYG Q
Sbjct: 118 SALQSAVASQ-PVSVTVEA------AGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSG 170
Query: 186 IPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
YW+VRNSWG ++G+ +ER + CGI Q+ Y T
Sbjct: 171 KNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
Score = 107 bits (267), Expect = 3e-23, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P DWR K +Q CGSCWAFS +E I+TG+L+ S+ +LV+C
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
GC+G + + +Y G++++++YPY G C + +V G + N
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS---CKPYRLRVVSINGFQRVTRNNE 117
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLG----HAVLLVGYGKQDN 916
++ + P+SV + + G P + G H V++VGYG Q
Sbjct: 118 SALQSAVASQ-PVSVTVEA------AGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSG 170
Query: 917 IPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
YW+VRNSWG ++G+ +ER + CGI Q+ Y T
Sbjct: 171 KNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P DWR K +Q CGSCWAFS +E I+TG+L+ S+ +LV+C
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 436 SGCGGCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
GC G + +Y G++++++YPY G C + +V G + N
Sbjct: 61 HGCNG-GWMNNAFQYIITNGGIDTQQNYPYSAVQGS---CKPYRLRVVSINGFQRVTRNN 116
Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLG----HAVLLVGYGKQD 550
++ + P+SV + + G P + G H V++VGYG Q
Sbjct: 117 ESALQSAVASQ-PVSVTVEA------AGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQS 169
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
YW+ RNSWG ++G+ +ER + CGI Q+ Y T
Sbjct: 170 GKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 20/134 (14%)
Query: 910 GYGKQDNIPYWLVRNSWGP----IGPDEGFFKIERGNNACGIEQIAGY-ATIDVVKNDET 964
G Q N PY V+ S P + GF ++ R N + +A ++ V
Sbjct: 80 GIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAP 139
Query: 965 CSPYDLG-----------HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA- 1012
Y G H V++VGYG Q YW+VRNSWG ++G+ +ER +
Sbjct: 140 FQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASS 199
Query: 1013 ---CGIEQIAGYAT 1023
CGI Q+ Y T
Sbjct: 200 AGLCGIAQLPSYPT 213
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 149/320 (46%), Gaps = 31/320 (9%)
Query: 652 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQD------GHKKHERY--GTSEFSDRSP 703
E +++ F ++++ + Y N +E RFE FK + +KK+ Y G +EF+D S
Sbjct: 16 ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSN 75
Query: 704 EEILCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQAAC 763
+E K + T E+ + +P+ DWRKK P Q +C
Sbjct: 76 DEFNEKYVGSLIDATIEQSYDEEFINEDIVN-------LPENVDWRKKGAVTPVRHQGSC 128
Query: 764 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLES 823
GSCWAFS +EG I+TGKLVE S+ +LV+C ++ GC G + ++EY + G+
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHL 188
Query: 824 EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIH 883
YPYK G VK +G + N + + K P+SV++ S
Sbjct: 189 RSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEGNLLNAIAKQ-PVSVVVESK--- 243
Query: 884 DYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIE 939
G P + E + AV VGYGK Y L++NSWG ++G+ +I+
Sbjct: 244 ---GRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIK 300
Query: 940 R--GNN--ACGIEQIAGYAT 955
R GN+ CG+ + + Y T
Sbjct: 301 RAPGNSPGVCGLYKSSYYPT 320
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 144/319 (45%), Gaps = 28/319 (8%)
Query: 286 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQD------GHKKHERY--GTSEFSDRSP 337
E +++ F ++++ + Y N +E RFE FK + +KK+ Y G +EF+D S
Sbjct: 16 ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSN 75
Query: 338 EEILCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQAAC 397
+E K + T E+ + +P+ DWRKK P Q +C
Sbjct: 76 DEFNEKYVGSLIDATIEQSYDEEFINEDIVN-------LPENVDWRKKGAVTPVRHQGSC 128
Query: 398 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLE 457
GSCWAFS +EG I+TGKLVE S+ +LV+C ++ GC G +EY + G+
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKG-GYPPYALEYVAKNGIH 187
Query: 458 SEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNS--H 515
YPY+ G VK +G + N + + K P+SV + S
Sbjct: 188 LRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGR 245
Query: 516 LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 575
Y G E + AV VGYGK Y L +NSWG ++G+ +I+R
Sbjct: 246 PFQLYKGGIF----EGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR 301
Query: 576 --GNN--ACGIEQIAGYAT 590
GN+ CG+ + + Y T
Sbjct: 302 APGNSPGVCGLYKSSYYPT 320
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 16/222 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWRKK P Q CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 107 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 166
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
GC G + ++EY + G+ YPYK G VK +G + N
Sbjct: 167 HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEG 225
Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNI 186
+ + K P+SV++ S G P + E + AV VGYGK
Sbjct: 226 NLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGK 278
Query: 187 PYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 224
Y L++NSWG ++G+ +I+R GN+ CG+ + + Y T
Sbjct: 279 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 320
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 16/218 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWRKK P +Q +CGSCWAFS +E I+TG L+ S+ +LV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
GC G F + +Y + G++++ +YPYK G SKV G + + F
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP----CQAASKVVSIDGYNGVPFCNE 116
Query: 861 ETMKK-ILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
+K+ + + +++ +S Y+ T L H V +VGY Q N Y
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT----KLNHGVTIVGY--QAN--Y 168
Query: 920 WLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
W+VRNSWG ++G+ ++ R G CGI ++ Y T
Sbjct: 169 WIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWRKK P +Q CGSCWAFS +E I+TG L+ S+ +LV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 71 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
GC G F + +Y + G++++ +YPYK G SKV G + + F
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP----CQAASKVVSIDGYNGVPFCNE 116
Query: 130 ETMKK-ILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
+K+ + + +++ +S Y+ T L H V +VGY Q N Y
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT----KLNHGVTIVGY--QAN--Y 168
Query: 189 WLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 224
W+VRNSWG ++G+ ++ R G CGI ++ Y T
Sbjct: 169 WIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 17/219 (7%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWRKK P +Q +CGSCWAFS +E I+TG L+ S+ +LV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G + + G++++ +YPY+ G SKV G + + F
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP----CQAASKVVSIDGYNGVPFCNE 116
Query: 496 ETMKKILYKYGPLSVGLNSHLIHF--YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
+K+ + P +V +++ F Y+ T L H V +VGY
Sbjct: 117 XALKQAV-AVQPSTVAIDASSAQFQQYSSGIFSGPCGT----KLNHGVTIVGY----QAN 167
Query: 554 YWLARNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 590
YW+ RNSWG ++G+ ++ R G CGI ++ Y T
Sbjct: 168 YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 970 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 1023
L H V +VGY YW+VRNSWG ++G+ ++ R G CGI ++ Y T
Sbjct: 155 LNHGVTIVGY----QANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 16/224 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CG+ +AFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDVGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-K 182
E + K + GP+SV +++ + G + + S L HA+L+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSS---LNHAMLVVGYGFI 173
Query: 183 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+N YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 SNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 16/224 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CG+ +AFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDVGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-K 913
E + K + GP+SV +++ + G + + S L HA+L+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSS---LNHAMLVVGYGFI 173
Query: 914 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+N YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 174 SNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CG+ +AFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 59
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDVGFVDI 115
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQD 550
E + K + GP+SV +++ F CS L HA+L+VGYG +
Sbjct: 116 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 176 NQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 970 LGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 1024
L HA+L+VGYG ++ YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 161 LNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 18/222 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 68
+P DWR Q +CG CWAFS +EG I TG L+ S+ +L++C +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 69 QCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 125
GC+G + ++ + G+ +E++YPY +GE C D K T + +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGE---CNVDLQNEKYVTIDTYENVP 117
Query: 126 FNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 183
+N ++ + Y P+SV L++ D Y+ T + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGPCGTA----IDHAVTIVGYGTE 172
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 222
I YW+V+NSW +EG+ +I R G CGI + Y
Sbjct: 173 GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 18/222 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 799
+P DWR Q CG CWAFS +EG I TG L+ S+ +L++C +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 800 QCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
GC+G + ++ + G+ +E++YPY +GE C D K T + +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGE---CNVDLQNEKYVTIDTYENVP 117
Query: 857 FNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 914
+N ++ + Y P+SV L++ D Y+ T + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGPCGTA----IDHAVTIVGYGTE 172
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 953
I YW+V+NSW +EG+ +I R G CGI + Y
Sbjct: 173 GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 433
+P DWR Q CG CWAFS +EG I TG L+ S+ +L++C +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 434 QCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFL 490
GC G DG + I + G+ +E++YPY +GE ++ V + T ++
Sbjct: 61 NTRGCNGGYITDGFQFII---NNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVP 117
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
Y N E + Y P+SV L++ F + + D HAV +VGYG +
Sbjct: 118 YNN--EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAID--HAVTIVGYGTEG 173
Query: 551 DIPYWLARNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 588
I YW+ +NSW +EG+ +I R G CGI + Y
Sbjct: 174 GIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 970 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
+ HAV +VGYG + I YW+V+NSW +EG+ +I R G CGI + Y
Sbjct: 160 IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC--AK 68
+P DWR + P DQ DCGSCWAFS G LEG + KTGKLV S+ +L++C A+
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 69 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
C G + +Y G+ SE YPY A E+ + + VK+ KD
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL-ARDEECRAQSCEKVVKILGFKDVPRR- 124
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--KQDN 185
SE K P+S+ + +D + + D +C DL H VLLVGYG K+
Sbjct: 125 -SEAAMKAALAKSPVSIAIEADQM-PFQFYHEGVFDASCGT-DLDHGVLLVGYGTDKESK 181
Query: 186 IPYWLVRNSWG 196
+W+++NSWG
Sbjct: 182 KDFWIMKNSWG 192
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 10/191 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC--AK 799
+P DWR + P DQ CGSCWAFS G LEG + KTGKLV S+ +L++C A+
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 800 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
C G + +Y G+ SE YPY A E+ + + VK+ KD
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL-ARDEECRAQSCEKVVKILGFKDVPRR- 124
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--KQDN 916
SE K P+S+ + +D + + D +C DL H VLLVGYG K+
Sbjct: 125 -SEAAMKAALAKSPVSIAIEADQM-PFQFYHEGVFDASCGT-DLDHGVLLVGYGTDKESK 181
Query: 917 IPYWLVRNSWG 927
+W+++NSWG
Sbjct: 182 KDFWIMKNSWG 192
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 95/194 (48%), Gaps = 15/194 (7%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P DWR + P DQ CGSCWAFS G LEG + KTGKLV S+ +L++C++
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA- 65
Query: 436 SGCGGCDGLEQPIEYTH---QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G C G E + + G+ SE YPY E+ + + VK+ KD
Sbjct: 66 EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL-ARDEECRAQSCEKVVKILGFKDVP-- 122
Query: 493 NGSETMKKILYKYGPLSVGLNSHLI--HFYNGTPIRKNDETCSPYDLGHAVLLVGYG--K 548
SE K P+S+ + + + FY+ D +C DL H VLLVGYG K
Sbjct: 123 RRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVF---DASCGT-DLDHGVLLVGYGTDK 178
Query: 549 QDDIPYWLARNSWG 562
+ +W+ +NSWG
Sbjct: 179 ESKKDFWIMKNSWG 192
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 962 DETCSPYDLGHAVLLVGYG--KQDDIPYWLVRNSWG 995
D +C DL H VLLVGYG K+ +W+++NSWG
Sbjct: 158 DASCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWG 192
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 68/221 (30%), Positives = 100/221 (45%), Gaps = 12/221 (5%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P + DWRKK DQ ACG CWAF G +EG AI TG+L+ S+ Q+V+C
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 803 GCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
G + + + G+ S+ +YPY +G C +K G + + S
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDGYTNVPNSSSA 118
Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS--PYDLGHAVLLVGYGKQ-DNIP 918
+ + + +++ +S Y G I +CS P + H VL+VGYG N
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAG-SSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNN----ACGIEQIAGYAT 955
YW+V+NSWG +G+ I R N C I+ Y T
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
Score = 100 bits (248), Expect = 5e-21, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 98/221 (44%), Gaps = 11/221 (4%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P + DWRKK DQ ACG CWAF G +EG AI TG+L+ S+ Q+V+C
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
G D + G+ S+ +YPY +G C +K G + + S
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDGYTNVPNSSSA 118
Query: 497 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCS--PYDLGHAVLLVGYGKQ-DDIP 553
+ + + +++ +S Y G I +CS P + H VL+VGYG +
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAG-SSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 554 YWLARNSWGPIGPDEGFFKIERGNN----ACGIEQIAGYAT 590
YW+ +NSWG +G+ I R N C I+ Y T
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
Score = 100 bits (248), Expect = 6e-21, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 12/221 (5%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P + DWRKK DQ CG CWAF G +EG AI TG+L+ S+ Q+V+C
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 72 GCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
G + + + G+ S+ +YPY +G C +K G + + S
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDGYTNVPNSSSA 118
Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS--PYDLGHAVLLVGYGKQ-DNIP 187
+ + + +++ +S Y G I +CS P + H VL+VGYG N
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAG-SSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNN----ACGIEQIAGYAT 224
YW+V+NSWG +G+ I R N C I+ Y T
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 964 TCS--PYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIERGNN----ACGIE 1016
+CS P + H VL+VGYG + YW+V+NSWG +G+ I R N C I+
Sbjct: 152 SCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAID 211
Query: 1017 QIAGYAT 1023
Y T
Sbjct: 212 AWGSYPT 218
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 14/220 (6%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 68
+P DWR Q +CG WAFS +EG I +G L+ S+ +L++C +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 69 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GCDG + ++ + G+ +E++YPY +G+ D+ V + T ++ + N
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 128 GSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 185
E + Y P+SV L++ D Y T + HA+++VGYG +
Sbjct: 121 --EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTA----VDHAIVIVGYGTEGG 174
Query: 186 IPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 222
+ YW+V+NSW +EG+ +I R G CGI + Y
Sbjct: 175 VDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 14/220 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 799
+P DWR Q CG WAFS +EG I +G L+ S+ +L++C +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 800 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GCDG + ++ + G+ +E++YPY +G+ D+ V + T ++ + N
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 859 GSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
E + Y P+SV L++ D Y T + HA+++VGYG +
Sbjct: 121 --EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTA----VDHAIVIVGYGTEGG 174
Query: 917 IPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 953
+ YW+V+NSW +EG+ +I R G CGI + Y
Sbjct: 175 VDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 433
+P DWR Q CG WAFS +EG I +G L+ S+ +L++C +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 434 QCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFL 490
GC G DG + I + G+ +E++YPY +G+ D+ V + T ++
Sbjct: 61 NTRGCDGGYITDGFQFII---NDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVP 117
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
Y N E + Y P+SV L++ F + D HA+++VGYG +
Sbjct: 118 YNN--EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVD--HAIVIVGYGTEG 173
Query: 551 DIPYWLARNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 588
+ YW+ +NSW +EG+ +I R G CGI + Y
Sbjct: 174 GVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
HA+++VGYG + + YW+V+NSW +EG+ +I R G CGI + Y
Sbjct: 162 HAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWRKK P Q +CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
GC G + ++EY + G+ YPYK G VK +G + N
Sbjct: 61 HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEG 119
Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNI 917
+ + K P+SV++ S G P + E + HAV VGYGK
Sbjct: 120 NLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGK 172
Query: 918 PYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 955
Y L++NSWG ++G+ +I+R GN+ CG+ + + Y T
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 16/222 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWRKK P Q CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
GC G + ++EY + G+ YPYK G VK +G + N
Sbjct: 61 HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEG 119
Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNI 186
+ + K P+SV++ S G P + E + HAV VGYGK
Sbjct: 120 NLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGK 172
Query: 187 PYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 224
Y L++NSWG ++G+ +I+R GN+ CG+ + + Y T
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 105/221 (47%), Gaps = 13/221 (5%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWRKK P Q +CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G +EY + G+ YPY+ G VK +G + N
Sbjct: 61 HGCKG-GYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNE 118
Query: 496 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
+ + K P+SV + S Y G T + HAV VGYGK
Sbjct: 119 GNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGPCGT----KVDHAVTAVGYGKSGGKG 173
Query: 554 YWLARNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 590
Y L +NSWG ++G+ +I+R GN+ CG+ + + Y T
Sbjct: 174 YILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWRKK P Q +CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
GC G + ++EY + G+ YPYK G VK +G + N
Sbjct: 61 HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEG 119
Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNI 917
+ + K P+SV++ S G P + E + HAV VGYGK
Sbjct: 120 NLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGK 172
Query: 918 PYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 955
Y L++NSWG ++G+ +I+R GN+ CG+ + + Y T
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 16/222 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWRKK P Q CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
GC G + ++EY + G+ YPYK G VK +G + N
Sbjct: 61 HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEG 119
Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNI 186
+ + K P+SV++ S G P + E + HAV VGYGK
Sbjct: 120 NLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGK 172
Query: 187 PYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 224
Y L++NSWG ++G+ +I+R GN+ CG+ + + Y T
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 105/221 (47%), Gaps = 13/221 (5%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWRKK P Q +CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G +EY + G+ YPY+ G VK +G + N
Sbjct: 61 HGCKG-GYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNE 118
Query: 496 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
+ + K P+SV + S Y G T + HAV VGYGK
Sbjct: 119 GNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGPCGT----KVEHAVTAVGYGKSGGKG 173
Query: 554 YWLARNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 590
Y L +NSWG ++G+ +I+R GN+ CG+ + + Y T
Sbjct: 174 YILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 22/208 (10%)
Query: 14 AWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 73
A+DWR + P DQ +CGSCWAFS G +E QYAI+ KL+ S+ +LV+C+ + GC
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 74 DGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 132
+G + E G+ + DYPY + C D+ K + K++L ++ +
Sbjct: 81 NGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-L 136
Query: 133 KKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP--- 187
K+ L GP +SV ++ D G D C L HAV+LVG+G ++ +
Sbjct: 137 KEALRFLGPISISVAVSDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLT 191
Query: 188 -------YWLVRNSWGPIGPDEGFFKIE 208
Y++++NSWG + GF IE
Sbjct: 192 KKGEKHYYYIIKNSWGQQWGERGFINIE 219
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 22/208 (10%)
Query: 745 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 804
A+DWR + P DQ CGSCWAFS G +E QYAI+ KL+ S+ +LV+C+ + GC
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 805 DGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 863
+G + E G+ + DYPY + C D+ K + K++L ++ +
Sbjct: 81 NGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-L 136
Query: 864 KKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP--- 918
K+ L GP +SV ++ D G D C L HAV+LVG+G ++ +
Sbjct: 137 KEALRFLGPISISVAVSDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLT 191
Query: 919 -------YWLVRNSWGPIGPDEGFFKIE 939
Y++++NSWG + GF IE
Sbjct: 192 KKGEKHYYYIIKNSWGQQWGERGFINIE 219
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 104/210 (49%), Gaps = 25/210 (11%)
Query: 379 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 438
A+DWR + P DQ CGSCWAFS G +E QYAI+ KL+ S+ +LV+C+ + GC
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 439 GG---CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
G + E IE G+ + DYPY + C D+ K + K++L +
Sbjct: 81 NGGLINNAFEDMIEL---GGICPDGDYPYVSDAPN--LCNIDRCTEK-YGIKNYLSVPDN 134
Query: 496 ETMKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP- 553
+ +K+ L GP+S+ + S FY D C L HAV+LVG+G ++ +
Sbjct: 135 K-LKEALRFLGPISISVAVSDDFAFYKEGIF---DGECGD-QLNHAVMLVGFGMKEIVNP 189
Query: 554 ---------YWLARNSWGPIGPDEGFFKIE 574
Y++ +NSWG + GF IE
Sbjct: 190 LTKKGEKHYYYIIKNSWGQQWGERGFINIE 219
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 970 LGHAVLLVGYGKQDDIP----------YWLVRNSWGPIGPDEGFFKIE 1007
L HAV+LVG+G ++ + Y++++NSWG + GF IE
Sbjct: 172 LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIE 219
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 20/211 (9%)
Query: 745 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 804
A+DWR P DQA CGSCWAFS G +E QYAI+ L FS+ +LV+C+ + +GC
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 805 DGCFFEPSI-EYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 863
G + + + GL S+ DYPY + E C + + +T K ++ +
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNER-YTIKSYVSIP-DDKF 138
Query: 864 KKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD------- 915
K+ L GP+S+ + SD Y G + +P HAV+LVGYG +D
Sbjct: 139 KEALRYLGPISISIAASDDFAFYRGG-FYDGECGAAP---NHAVILVGYGMKDIYNEDTG 194
Query: 916 ---NIPYWLVRNSWGPIGPDEGFFKIERGNN 943
Y++++NSWG + G+ +E N
Sbjct: 195 RMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 20/211 (9%)
Query: 14 AWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 73
A+DWR P DQA CGSCWAFS G +E QYAI+ L FS+ +LV+C+ + +GC
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 74 DGCFFEPSI-EYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 132
G + + + GL S+ DYPY + E C + + +T K ++ +
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNER-YTIKSYVSIP-DDKF 138
Query: 133 KKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD------- 184
K+ L GP+S+ + SD Y G + +P HAV+LVGYG +D
Sbjct: 139 KEALRYLGPISISIAASDDFAFYRGG-FYDGECGAAP---NHAVILVGYGMKDIYNEDTG 194
Query: 185 ---NIPYWLVRNSWGPIGPDEGFFKIERGNN 212
Y++++NSWG + G+ +E N
Sbjct: 195 RMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 379 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 438
A+DWR P DQA CGSCWAFS G +E QYAI+ L FS+ +LV+C+ + +GC
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 439 GGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETM 498
G + GL S+ DYPY + E C + + +T K ++ +
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNER-YTIKSYVSIP-DDKF 138
Query: 499 KKILYKYGPLSVGL-NSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD------- 550
K+ L GP+S+ + S FY G + +P HAV+LVGYG +D
Sbjct: 139 KEALRYLGPISISIAASDDFAFYRGG-FYDGECGAAP---NHAVILVGYGMKDIYNEDTG 194
Query: 551 ---DIPYWLARNSWGPIGPDEGFFKIERGNN 578
Y++ +NSWG + G+ +E N
Sbjct: 195 RMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 972 HAVLLVGYGKQD----------DIPYWLVRNSWGPIGPDEGFFKIERGNN 1011
HAV+LVGYG +D Y++++NSWG + G+ +E N
Sbjct: 176 HAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 14/178 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 14/178 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 59
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDI 115
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 116 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 10/212 (4%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
VP D R P Q CGSCWAFS E Y ++ S+ +LV+CA Q
Sbjct: 11 VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQ- 69
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
GC G IEY Q G+ E+ YPY + +C S+ + ++ +
Sbjct: 70 HGCHGDTIPRGIEYIQQNGVVEERSYPYV---AREQRCRRPNSQHYGISNYCQIYPPDVK 126
Query: 862 TMKKILYK-YGPLSVLLN-SDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
+++ L + + ++V++ DL Y+G I ++D P HAV +VGYG
Sbjct: 127 QIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGD 184
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 949
YW+VRNSW D G+ + GNN IEQ
Sbjct: 185 DYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQ 216
Score = 94.0 bits (232), Expect = 4e-19, Method: Composition-based stats.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 10/212 (4%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
VP D R P Q CGSCWAFS E Y ++ S+ +LV+CA Q
Sbjct: 11 VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQ- 69
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
GC G IEY Q G+ E+ YPY + +C S+ + ++ +
Sbjct: 70 HGCHGDTIPRGIEYIQQNGVVEERSYPYV---AREQRCRRPNSQHYGISNYCQIYPPDVK 126
Query: 131 TMKKILYK-YGPLSVLLN-SDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
+++ L + + ++V++ DL Y+G I ++D P HAV +VGYG
Sbjct: 127 QIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGD 184
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 218
YW+VRNSW D G+ + GNN IEQ
Sbjct: 185 DYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQ 216
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 66/213 (30%), Positives = 95/213 (44%), Gaps = 11/213 (5%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
VP D R P Q CGSCWAFS E Y ++ S+ +LV+CA Q
Sbjct: 11 VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQ- 69
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G D + + IEY Q G+ E+ YPY + +C S+ + +Y
Sbjct: 70 HGCHG-DTIPRGIEYIQQNGVVEERSYPYV---AREQRCRRPNSQHYGISNYCQIYPPDV 125
Query: 496 ETMKKILYKYG---PLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD 551
+ +++ L + + +G+ Y+G I ++D P HAV +VGYG
Sbjct: 126 KQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQG 183
Query: 552 IPYWLARNSWGPIGPDEGFFKIERGNNACGIEQ 584
YW+ RNSW D G+ + GNN IEQ
Sbjct: 184 DDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQ 216
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 946 GIEQIAGYATID---VVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEG 1002
GI+ + + D ++++D P HAV +VGYG YW+VRNSW D G
Sbjct: 144 GIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSG 201
Query: 1003 FFKIERGNNACGIEQ 1017
+ + GNN IEQ
Sbjct: 202 YGYFQAGNNLMMIEQ 216
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 99/212 (46%), Gaps = 12/212 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P++ DWR K P Q C SCWAFS +EG IKTG LVE S+ +LV+C Q
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
GC+ + S++Y Q G+ YPY KVK N
Sbjct: 61 YGCNRGYQSTSLQYVAQNGIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGS 120
Query: 862 TMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
+ I ++ P+SV++ S +Y G + T + HAV VGYGK Y
Sbjct: 121 LLNAIAHQ--PVSVVVESAGRDFQNYKGGIFEGSCGT----KVDHAVTAVGYGKSGGKGY 174
Query: 920 WLVRNSWGPIGPDEGFFKIER--GNN--ACGI 947
L++NSWGP + G+ +I R GN+ CG+
Sbjct: 175 ILIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 99/212 (46%), Gaps = 12/212 (5%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P++ DWR K P Q C SCWAFS +EG IKTG LVE S+ +LV+C Q
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
GC+ + S++Y Q G+ YPY KVK N
Sbjct: 61 YGCNRGYQSTSLQYVAQNGIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGS 120
Query: 131 TMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
+ I ++ P+SV++ S +Y G + T + HAV VGYGK Y
Sbjct: 121 LLNAIAHQ--PVSVVVESAGRDFQNYKGGIFEGSCGT----KVDHAVTAVGYGKSGGKGY 174
Query: 189 WLVRNSWGPIGPDEGFFKIER--GNN--ACGI 216
L++NSWGP + G+ +I R GN+ CG+
Sbjct: 175 ILIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 101/217 (46%), Gaps = 21/217 (9%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P++ DWR K P Q C SCWAFS +EG IKTG LVE S+ +LV+C Q
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 436 SGCGGCDGLEQ-PIEYTHQAGLESEKDYPYRNGNGEKFKCAYDK---SKVKLFTGKDFLY 491
GC G + ++Y Q G+ YPY ++ C ++ KVK
Sbjct: 61 YGCN--RGYQSTSLQYVAQNGIHLRAKYPYI---AKQQTCRANQVGGPKVKTNGVGRVQS 115
Query: 492 FNGSETMKKILYKYGPLSVGLNSHLIHF--YNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 549
N + I ++ P+SV + S F Y G + T + HAV VGYGK
Sbjct: 116 NNEGSLLNAIAHQ--PVSVVVESAGRDFQNYKGGIFEGSCGT----KVDHAVTAVGYGKS 169
Query: 550 DDIPYWLARNSWGPIGPDEGFFKIER--GNN--ACGI 582
Y L +NSWGP + G+ +I R GN+ CG+
Sbjct: 170 GGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 22/208 (10%)
Query: 14 AWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 73
A+DWR + P DQ +CGS WAFS G +E QYAI+ KL+ S+ +LV+C+ + GC
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 74 DGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 132
+G + E G+ + DYPY + C D+ K + K++L ++ +
Sbjct: 80 NGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-L 135
Query: 133 KKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP--- 187
K+ L GP +SV ++ D G D C L HAV+LVG+G ++ +
Sbjct: 136 KEALRFLGPISISVAVSDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLT 190
Query: 188 -------YWLVRNSWGPIGPDEGFFKIE 208
Y++++NSWG + GF IE
Sbjct: 191 KKGEKHYYYIIKNSWGQQWGERGFINIE 218
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 22/208 (10%)
Query: 745 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 804
A+DWR + P DQ CGS WAFS G +E QYAI+ KL+ S+ +LV+C+ + GC
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 805 DGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 863
+G + E G+ + DYPY + C D+ K + K++L ++ +
Sbjct: 80 NGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-L 135
Query: 864 KKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP--- 918
K+ L GP +SV ++ D G D C L HAV+LVG+G ++ +
Sbjct: 136 KEALRFLGPISISVAVSDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLT 190
Query: 919 -------YWLVRNSWGPIGPDEGFFKIE 939
Y++++NSWG + GF IE
Sbjct: 191 KKGEKHYYYIIKNSWGQQWGERGFINIE 218
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 379 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 438
A+DWR + P DQ CGS WAFS G +E QYAI+ KL+ S+ +LV+C+ + GC
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 439 GG---CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
G + E IE G+ + DYPY + C D+ K + K++L +
Sbjct: 80 NGGLINNAFEDMIEL---GGICPDGDYPYVSDAPN--LCNIDRCTEK-YGIKNYLSVPDN 133
Query: 496 ETMKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP- 553
+ +K+ L GP+S+ + S FY D C L HAV+LVG+G ++ +
Sbjct: 134 K-LKEALRFLGPISISVAVSDDFAFYKEGIF---DGECGD-QLNHAVMLVGFGMKEIVNP 188
Query: 554 ---------YWLARNSWGPIGPDEGFFKIE 574
Y++ +NSWG + GF IE
Sbjct: 189 LTKKGEKHYYYIIKNSWGQQWGERGFINIE 218
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 970 LGHAVLLVGYGKQDDIP----------YWLVRNSWGPIGPDEGFFKIE 1007
L HAV+LVG+G ++ + Y++++NSWG + GF IE
Sbjct: 171 LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIE 218
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWR+K P +Q +CGSCWAFS +EG I+TG L E+S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWR+K P +Q CGSCWAFS +EG I+TG L E+S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 128
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 186
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 216
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWR+K P +Q +CGSCWAFS +EG I+TG L E+S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G ++ Q G+ YPY G + C + K D +
Sbjct: 61 YGCNGGYPWSA-LQLVAQYGIHYRNTYPYE---GVQRYCR-SREKGPYAAKTDGVRQVQP 115
Query: 496 ETMKKILYKYG--PLSVGLNSHLIHFYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDD 551
+LY P+SV L + F + + P + HAV VGYG
Sbjct: 116 YNEGALLYSIANQPVSVVLEAAGKDF----QLYRGGIFVGPCGNKVDHAVAAVGYGPN-- 169
Query: 552 IPYWLARNSWGPIGPDEGFFKIERGN-NACGI 582
Y L +NSWG + G+ +I+RG N+ G+
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 1015
HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWR+K P +Q +CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWR+K P +Q CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 128
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 186
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 216
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWR+K P +Q +CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G ++ Q G+ YPY G + C + K D +
Sbjct: 61 YGCNGGYPWS-ALQLVAQYGIHYRNTYPYE---GVQRYCR-SREKGPYAAKTDGVRQVQP 115
Query: 496 ETMKKILYKYG--PLSVGLNSHLIHFYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDD 551
+LY P+SV L + F + + P + HAV VGYG
Sbjct: 116 YNQGALLYSIANQPVSVVLQAAGKDF----QLYRGGIFVGPCGNKVDHAVAAVGYGPN-- 169
Query: 552 IPYWLARNSWGPIGPDEGFFKIERGN-NACGI 582
Y L +NSWG + G+ +I+RG N+ G+
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 1015
HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 181
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+ +
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
GC+G + + +Y GL+SE+ YPY+ + C Y+ K + F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 912
E + K + GP+SV +++ + G + CS D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 9/176 (5%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P + DWR+K P +Q CGS WAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP- 59
Query: 436 SGCGGCDG--LEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G ++ +Y GL+SE+ YPY + C Y+ K + F+
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDI 115
Query: 493 NGSE-TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 547
E + K + GP+SV +++ F + CS D+ H VL+VGYG
Sbjct: 116 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P+ DWR+K P +Q +CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNGS 860
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 62 GCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNIP 918
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 120 ALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN---- 169
Query: 919 YWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P+ DWR+K P +Q CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 72 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNGS 129
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 62 GCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNIP 187
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 120 ALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN---- 169
Query: 188 YWLVRNSWGPIGPDEGFFKIERGN-NACGI 216
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 18/211 (8%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P+ DWR+K P +Q +CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
GC G ++ Q G+ YPY G + C + K D +
Sbjct: 62 GCNGGYPWS-ALQLVAQYGIHYRNTYPYE---GVQRYCR-SREKGPYAAKTDGVRQVQPY 116
Query: 497 TMKKILYKYG--PLSVGLNSHLIHFYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDDI 552
+LY P+SV L + F + + P + HAV VGYG
Sbjct: 117 NQGALLYSIANQPVSVVLQAAGKDF----QLYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 553 PYWLARNSWGPIGPDEGFFKIERGN-NACGI 582
Y L +NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 1015
HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWR+K P +Q +CGS WAFS +EG I+TG L E+S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWR+K P +Q CGS WAFS +EG I+TG L E+S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 128
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 186
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 216
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWR+K P +Q +CGS WAFS +EG I+TG L E+S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G ++ Q G+ YPY G + C + K D +
Sbjct: 61 YGCNGGYPWSA-LQLVAQYGIHYRNTYPYE---GVQRYCR-SREKGPYAAKTDGVRQVQP 115
Query: 496 ETMKKILYKYG--PLSVGLNSHLIHFYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDD 551
+LY P+SV L + F + + P + HAV VGYG
Sbjct: 116 YNEGALLYSIANQPVSVVLEAAGKDF----QLYRGGIFVGPCGNKVDHAVAAVGYGPN-- 169
Query: 552 IPYWLARNSWGPIGPDEGFFKIERGN-NACGI 582
Y L +NSWG + G+ +I+RG N+ G+
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 1015
HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWR+K P +Q +CGS WAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWR+K P +Q CGS WAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 128
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 186
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 216
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWR+K P +Q +CGS WAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G ++ Q G+ YPY G + C + K D +
Sbjct: 61 YGCNGGYPWS-ALQLVAQYGIHYRNTYPYE---GVQRYCR-SREKGPYAAKTDGVRQVQP 115
Query: 496 ETMKKILYKYG--PLSVGLNSHLIHFYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDD 551
+LY P+SV L + F + + P + HAV VGYG
Sbjct: 116 YNQGALLYSIANQPVSVVLQAAGKDF----QLYRGGIFVGPCGNKVDHAVAAVGYGPN-- 169
Query: 552 IPYWLARNSWGPIGPDEGFFKIERGN-NACGI 582
Y L +NSWG + G+ +I+RG N+ G+
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 1015
HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 16/212 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P + DWR+K P +Q CGSCW FS +EG I TG+L+ S+ +L++C ++
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
GC G F +++Y +G+ + YPY+ + KVK N
Sbjct: 61 YGCRGGFPLYALQYVANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQA 120
Query: 862 TMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
+++I + P+S+++ + +Y G T + HAV VGYG Y
Sbjct: 121 LIQRIAIQ--PVSIVVEAKGRAFQNYRGGIFAGPCGT----SIDHAVAAVGYGND----Y 170
Query: 920 WLVRNSWGPIGPDEGFFKIERGN----NACGI 947
L++NSWG + G+ +I+RG+ ACG+
Sbjct: 171 ILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 16/212 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P + DWR+K P +Q CGSCW FS +EG I TG+L+ S+ +L++C ++
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
GC G F +++Y +G+ + YPY+ + KVK N
Sbjct: 61 YGCRGGFPLYALQYVANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQA 120
Query: 131 TMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
+++I + P+S+++ + +Y G T + HAV VGYG Y
Sbjct: 121 LIQRIAIQ--PVSIVVEAKGRAFQNYRGGIFAGPCGT----SIDHAVAAVGYGND----Y 170
Query: 189 WLVRNSWGPIGPDEGFFKIERGN----NACGI 216
L++NSWG + G+ +I+RG+ ACG+
Sbjct: 171 ILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 19/214 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P + DWR+K P +Q CGSCW FS +EG I TG+L+ S+ +L++C ++
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSK---VKLFTGKDFLYF 492
GC G L ++Y +G+ + YPY G + +C ++K VK
Sbjct: 61 YGCRGGFPLYA-LQYVANSGIHLRQYYPY---EGVQRQCRASQAKGPKVKTDGVGRVPRN 116
Query: 493 NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDI 552
N +++I + + V Y G T + HAV VGYG
Sbjct: 117 NEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGT----SIDHAVAAVGYGND--- 169
Query: 553 PYWLARNSWGPIGPDEGFFKIERGN----NACGI 582
Y L +NSWG + G+ +I+RG+ ACG+
Sbjct: 170 -YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGI 1015
HAV VGYG Y L++NSWG + G+ +I+RG+ ACG+
Sbjct: 159 HAVAAVGYGND----YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 740 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 794
P+P ++D W DQ+ACGSCWA + A + ++ G + V S L
Sbjct: 70 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 129
Query: 795 VECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG---------E 835
+ C C GC+G + + Y GL S+ PY K+ NG +
Sbjct: 130 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 189
Query: 836 KFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIR 891
KC Y D + + + + + G + + L+ GP V D+ D+
Sbjct: 190 TPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYEDFIAYNSG 247
Query: 892 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 951
Y GHAV LVG+G + +PYW + NSW +G+F I RG++ CGIE
Sbjct: 248 VYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED-G 306
Query: 952 GYATIDVVKN 961
G A I + N
Sbjct: 307 GSAGIPLAPN 316
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 30/244 (12%)
Query: 2 LMEVEKDGPVPDAWD----WRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLV 56
E E P+P ++D W DQ+ CGSCWA + A + ++ G + V
Sbjct: 63 FTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDV 122
Query: 57 EFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG--- 103
S L+ C C GC+G + + Y GL S+ PY K+ NG
Sbjct: 123 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPP 182
Query: 104 ------EKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHD 153
+ KC Y D + + + + + G + + L+ GP V D+ D
Sbjct: 183 CSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYED 240
Query: 154 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA 213
+ Y GHAV LVG+G + +PYW + NSW +G+F I RG++
Sbjct: 241 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE 300
Query: 214 CGIE 217
CGIE
Sbjct: 301 CGIE 304
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 107/242 (44%), Gaps = 39/242 (16%)
Query: 374 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 428
P+P ++D W DQ+ACGSCWA + A + ++ G + V S L
Sbjct: 70 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 129
Query: 429 VECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RNG------- 467
+ C CS CG GC+G ++ Y GL S+ PY +NG
Sbjct: 130 LAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQF 186
Query: 468 NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNSH--LIHFYN 521
N + KC Y D + + + + + G + + L+ GP V + + I + +
Sbjct: 187 NFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNS 246
Query: 522 GTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACG 581
G + + Y GHAV LVG+G + +PYW NSW +G+F I RG++ CG
Sbjct: 247 GVYHHVSGQ----YLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECG 302
Query: 582 IE 583
IE
Sbjct: 303 IE 304
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
GHAV LVG+G + +PYW + NSW +G+F I RG++ CGIE
Sbjct: 259 GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 304
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWR+K P +Q +CGS WAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWR+K P +Q CGS WAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 128
GC+G + +++ Q G+ YPY+ +++ + +K T + +N
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 186
+ I + P+SV+L + D+ + + P + HAV VGYG
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 216
Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWR+K P +Q +CGS WAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
GC G ++ Q G+ YPY G + C + K D +
Sbjct: 61 YGCNGGYPWSA-LQLVAQYGIHYRNTYPYE---GVQRYCR-SREKGPYAAKTDGVRQVQP 115
Query: 496 ETMKKILYKYG--PLSVGLNSHLIHFYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDD 551
+LY P+SV L + F + + P + HAV VGYG
Sbjct: 116 YNEGALLYSIANQPVSVVLEAAGKDF----QLYRGGIFVGPCGNKVDHAVAAVGYGPN-- 169
Query: 552 IPYWLARNSWGPIGPDEGFFKIERGN-NACGI 582
Y L +NSWG + G+ +I+RG N+ G+
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 1015
HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 740 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 794
P+P ++D W DQ+ACGSCWA + A + ++ G + V S L
Sbjct: 69 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 128
Query: 795 VECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG---------E 835
+ C C GC+G + + Y GL S+ PY K+ NG +
Sbjct: 129 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 188
Query: 836 KFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIR 891
KC Y D + + + + + G + + L+ GP V D+ D+
Sbjct: 189 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYEDFIAYNSG 246
Query: 892 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 951
Y GHAV LVG+G + +PYW + NSW +G+F I RG++ CGIE
Sbjct: 247 VYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED-G 305
Query: 952 GYATIDVVKN 961
G A I + N
Sbjct: 306 GSAGIPLAPN 315
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 30/244 (12%)
Query: 2 LMEVEKDGPVPDAWD----WRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLV 56
E E P+P ++D W DQ+ CGSCWA + A + ++ G + V
Sbjct: 62 FTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDV 121
Query: 57 EFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG--- 103
S L+ C C GC+G + + Y GL S+ PY K+ NG
Sbjct: 122 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPP 181
Query: 104 ------EKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHD 153
+ KC Y D + + + + + G + + L+ GP V D+ D
Sbjct: 182 CSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYED 239
Query: 154 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA 213
+ Y GHAV LVG+G + +PYW + NSW +G+F I RG++
Sbjct: 240 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE 299
Query: 214 CGIE 217
CGIE
Sbjct: 300 CGIE 303
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 107/242 (44%), Gaps = 39/242 (16%)
Query: 374 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 428
P+P ++D W DQ+ACGSCWA + A + ++ G + V S L
Sbjct: 69 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 128
Query: 429 VECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RNG------- 467
+ C CS CG GC+G ++ Y GL S+ PY +NG
Sbjct: 129 LAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQF 185
Query: 468 NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNSH--LIHFYN 521
N + KC Y D + + + + + G + + L+ GP V + + I + +
Sbjct: 186 NFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNS 245
Query: 522 GTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACG 581
G + + Y GHAV LVG+G + +PYW NSW +G+F I RG++ CG
Sbjct: 246 GVYHHVSGQ----YLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECG 301
Query: 582 IE 583
IE
Sbjct: 302 IE 303
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
GHAV LVG+G + +PYW + NSW +G+F I RG++ CGIE
Sbjct: 258 GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 303
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 740 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 794
P+P ++D W DQ+ACGSCWA + A + ++ G + V S L
Sbjct: 92 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 151
Query: 795 VECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG---------E 835
+ C C GC+G + + Y GL S+ PY K+ NG +
Sbjct: 152 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 211
Query: 836 KFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIR 891
KC Y D + + + + + G + + L+ GP V D+ D+
Sbjct: 212 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYEDFIAYNSG 269
Query: 892 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 951
Y GHAV LVG+G + +PYW + NSW +G+F I RG++ CGIE
Sbjct: 270 VYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED-G 328
Query: 952 GYATIDVVKN 961
G A I + N
Sbjct: 329 GSAGIPLAPN 338
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 30/244 (12%)
Query: 2 LMEVEKDGPVPDAWD----WRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLV 56
E E P+P ++D W DQ+ CGSCWA + A + ++ G + V
Sbjct: 85 FTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDV 144
Query: 57 EFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG--- 103
S L+ C C GC+G + + Y GL S+ PY K+ NG
Sbjct: 145 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPP 204
Query: 104 ------EKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHD 153
+ KC Y D + + + + + G + + L+ GP V D+ D
Sbjct: 205 CSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYED 262
Query: 154 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA 213
+ Y GHAV LVG+G + +PYW + NSW +G+F I RG++
Sbjct: 263 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE 322
Query: 214 CGIE 217
CGIE
Sbjct: 323 CGIE 326
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 107/242 (44%), Gaps = 39/242 (16%)
Query: 374 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 428
P+P ++D W DQ+ACGSCWA + A + ++ G + V S L
Sbjct: 92 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 151
Query: 429 VECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RNG------- 467
+ C CS CG GC+G ++ Y GL S+ PY +NG
Sbjct: 152 LAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQF 208
Query: 468 NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNSH--LIHFYN 521
N + KC Y D + + + + + G + + L+ GP V + + I + +
Sbjct: 209 NFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNS 268
Query: 522 GTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACG 581
G + + Y GHAV LVG+G + +PYW NSW +G+F I RG++ CG
Sbjct: 269 GVYHHVSGQ----YLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECG 324
Query: 582 IE 583
IE
Sbjct: 325 IE 326
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
GHAV LVG+G + +PYW + NSW +G+F I RG++ CGIE
Sbjct: 281 GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 326
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 50/250 (20%)
Query: 11 VPDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 64
+P ++D RKK DQ+ CGSCWAF + + I++G + VE S L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 65 ECAKQCS-GCDGCFFEPSIEYTHQAGLESEKD---------YPY---------------- 98
C + C GC+G P+ +Y + G+ + YP+
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 99 --------KNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSV--LLN 147
K +K+K Y + K + GK + N + ++K + KYGP+ +
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHR---GKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 148 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 207
D ++ +G ET GHA+ ++G+G ++ PYWL+ NSW + G+F+I
Sbjct: 180 EDFLNYKSGIYKHITGETLG----GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRI 235
Query: 208 ERGNNACGIE 217
RG + C IE
Sbjct: 236 VRGRDECSIE 245
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 50/250 (20%)
Query: 742 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 795
+P ++D RKK DQ+ CGSCWAF + + I++G + VE S L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 796 ECAKQCS-GCDGCFFEPSIEYTHQAGLESEKD---------YPY---------------- 829
C + C GC+G P+ +Y + G+ + YP+
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 830 --------KNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSV--LLN 878
K +K+K Y + K + GK + N + ++K + KYGP+ +
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHR---GKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 879 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 938
D ++ +G ET GHA+ ++G+G ++ PYWL+ NSW + G+F+I
Sbjct: 180 EDFLNYKSGIYKHITGETLG----GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRI 235
Query: 939 ERGNNACGIE 948
RG + C IE
Sbjct: 236 VRGRDECSIE 245
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 49/250 (19%)
Query: 376 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 429
+P ++D RKK DQ+ CGSCWAF + + I++G + VE S L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 430 ECAKQCS-GCGGC-----------DGLEQPIEYTHQAGLE----------SEKDYP---- 463
C + C GC G +G+ + AG E ++ YP
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 464 -------YRNGNGEKFKCAYDKSKVKLFTGKD-FLYFNGSETMKKILYKYGPLSVGLNSH 515
+ +K+K Y + K + GK + N + ++K + KYGP+ G +
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHR---GKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 516 --LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 573
+++ +G ET GHA+ ++G+G ++ PYWL NSW + G+F+I
Sbjct: 180 EDFLNYKSGIYKHITGETLG----GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRI 235
Query: 574 ERGNNACGIE 583
RG + C IE
Sbjct: 236 VRGRDECSIE 245
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
GHA+ ++G+G ++ PYWL+ NSW + G+F+I RG + C IE
Sbjct: 200 GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIE 245
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 44/248 (17%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
+P+++D R++ P DQ +CGSCWAF + + I T G++ VE S L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 796 ECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEKFKCA 840
C QC GC+G + + + + GL S Y PY + NG + C
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 841 YD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLLNSDL 881
+ + K + ++ S++ K+I+ YK GP+ + + SD
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 180
Query: 882 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG 941
+ +G + + GHA+ ++G+G ++ +PYWLV NSW D GFFKI RG
Sbjct: 181 LTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG 236
Query: 942 NNACGIEQ 949
N CGIE
Sbjct: 237 ENHCGIES 244
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 44/248 (17%)
Query: 11 VPDAWDWRKKNVTGPA----GDQADCGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 64
+P+++D R++ P DQ CGSCWAF + + I T G++ VE S L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 65 ECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEKFKCA 109
C QC GC+G + + + + GL S Y PY + NG + C
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 110 YD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLLNSDL 150
+ + K + ++ S++ K+I+ YK GP+ + + SD
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 180
Query: 151 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG 210
+ +G + + GHA+ ++G+G ++ +PYWLV NSW D GFFKI RG
Sbjct: 181 LTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG 236
Query: 211 NNACGIEQ 218
N CGIE
Sbjct: 237 ENHCGIES 244
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 47/250 (18%)
Query: 376 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 429
+P+++D R++ P DQ +CGSCWAF + + I T G++ VE S L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 430 ECAK-QCSGCGGCDG--LEQPIEYTHQAGLESEKDY-------PYR-------------- 465
C QC GC+G + + GL S Y PY
Sbjct: 61 TCCGIQCGD--GCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 118
Query: 466 -NGNGEKFKC-----AYDKSKVKLFTGKDFLYFNGSETMKKIL---YKYGPLSVGLN--S 514
G G+ KC A + K + ++ S++ K+I+ YK GP+ S
Sbjct: 119 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 178
Query: 515 HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE 574
+ + +G + + GHA+ ++G+G ++ +PYWL NSW D GFFKI
Sbjct: 179 DFLTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKIL 234
Query: 575 RGNNACGIEQ 584
RG N CGIE
Sbjct: 235 RGENHCGIES 244
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
GHA+ ++G+G ++ +PYWLV NSW D GFFKI RG N CGIE
Sbjct: 198 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 44/248 (17%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
+P+++D R++ P DQ +CGSCWAF + + I T G++ VE S L+
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 796 ECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEKFKCA 840
C QC GC+G + + + + GL S Y PY + NG + C
Sbjct: 67 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 126
Query: 841 YD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLLNSDL 881
+ + K + ++ S++ K+I+ YK GP+ + + SD
Sbjct: 127 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 186
Query: 882 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG 941
+ +G + + GHA+ ++G+G ++ +PYWLV NSW D GFFKI RG
Sbjct: 187 LTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG 242
Query: 942 NNACGIEQ 949
N CGIE
Sbjct: 243 ENHCGIES 250
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 44/252 (17%)
Query: 7 KDGPVPDAWDWRKKNVTGPA----GDQADCGSCWAFSIAGMLEGQYAIKT-GKL-VEFSK 60
+D +P+++D R++ P DQ CGSCWAF + + I T G++ VE S
Sbjct: 3 EDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSA 62
Query: 61 SQLVECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEK 105
L+ C QC GC+G + + + + GL S Y PY + NG +
Sbjct: 63 EDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGAR 122
Query: 106 FKCAYD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLL 146
C + + K + ++ S++ K+I+ YK GP+ + +
Sbjct: 123 PPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV 182
Query: 147 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFK 206
SD + +G + + GHA+ ++G+G ++ +PYWLV NSW D GFFK
Sbjct: 183 FSDFLTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFK 238
Query: 207 IERGNNACGIEQ 218
I RG N CGIE
Sbjct: 239 ILRGENHCGIES 250
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 47/250 (18%)
Query: 376 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 429
+P+++D R++ P DQ +CGSCWAF + + I T G++ VE S L+
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 430 ECAK-QCSGCGGCDG--LEQPIEYTHQAGLESEKDY-------PYR-------------- 465
C QC GC+G + + GL S Y PY
Sbjct: 67 TCCGIQCGD--GCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 124
Query: 466 -NGNGEKFKC-----AYDKSKVKLFTGKDFLYFNGSETMKKIL---YKYGPLSVGLN--S 514
G G+ KC A + K + ++ S++ K+I+ YK GP+ S
Sbjct: 125 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 184
Query: 515 HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE 574
+ + +G + + GHA+ ++G+G ++ +PYWL NSW D GFFKI
Sbjct: 185 DFLTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKIL 240
Query: 575 RGNNACGIEQ 584
RG N CGIE
Sbjct: 241 RGENHCGIES 250
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
GHA+ ++G+G ++ +PYWLV NSW D GFFKI RG N CGIE
Sbjct: 204 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 250
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 80.1 bits (196), Expect = 5e-15, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
+G P D R+ P Q CGSCWAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 851
Q GC G IEY G+ E Y Y + N ++F + + +++
Sbjct: 67 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 852 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 908
N ++ + + + ++V++ + D Y+G I + D P HAV +
Sbjct: 123 ------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 909 VGYGKQDNIPYWLVRNSWGPIGPDEGF 935
VGY + YW+VRNSW D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 8 DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 67
+G P D R+ P Q CGSCWAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 68 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 120
Q GC G IEY G+ E Y Y + N ++F + + +++
Sbjct: 67 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 121 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 177
N ++ + + + ++V++ + D Y+G I + D P HAV +
Sbjct: 123 ------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 178 VGYGKQDNIPYWLVRNSWGPIGPDEGF 204
VGY + YW+VRNSW D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 23/208 (11%)
Query: 373 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 432
+G P D R+ P Q CGSCWAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 433 KQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY-------RNGNGEKFKCAYDKSKVKLFT 485
Q GC G D + + IEY G+ E Y Y R N ++F + + +++
Sbjct: 67 SQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYP 121
Query: 486 GKDFLYFNGSETMKKILYKYGPLSVGL---NSHLIHFYNGTPIRKNDETCSPYDLGHAVL 542
N ++ + + + ++V + + Y+G I + D P HAV
Sbjct: 122 P------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVN 173
Query: 543 LVGYGKQDDIPYWLARNSWGPIGPDEGF 570
+VGY + YW+ RNSW D G+
Sbjct: 174 IVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 1003
HAV +VGY + YW+VRNSW D G+
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 79.3 bits (194), Expect = 9e-15, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
+G P D R+ P Q CGSCWAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA 66
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 851
Q GC G IEY G+ E Y Y + N ++F + + +++
Sbjct: 67 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 852 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 908
N ++ + + + ++V++ + D Y+G I + D P HAV +
Sbjct: 123 ------NVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 909 VGYGKQDNIPYWLVRNSWGPIGPDEGF 935
VGY + YW+VRNSW D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 8 DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 67
+G P D R+ P Q CGSCWAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA 66
Query: 68 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 120
Q GC G IEY G+ E Y Y + N ++F + + +++
Sbjct: 67 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 121 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 177
N ++ + + + ++V++ + D Y+G I + D P HAV +
Sbjct: 123 ------NVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 178 VGYGKQDNIPYWLVRNSWGPIGPDEGF 204
VGY + YW+VRNSW D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 61/210 (29%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 373 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 432
+G P D R+ P Q CGSCWAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA 66
Query: 433 KQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY-------RNGNGEKFKCA-----YDKSK 480
Q GC G D + + IEY G+ E Y Y R N ++F + Y +
Sbjct: 67 SQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNV 124
Query: 481 VKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHA 540
K+ ++ L ++T I G + H Y+G I + D P HA
Sbjct: 125 NKI---REAL----AQTHSAIAVIIGIKDLDAFRH----YDGRTIIQRDNGYQPN--YHA 171
Query: 541 VLLVGYGKQDDIPYWLARNSWGPIGPDEGF 570
V +VGY + YW+ RNSW D G+
Sbjct: 172 VNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 37.0 bits (84), Expect = 0.049, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 1003
HAV +VGY + YW+VRNSW D G+
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+CA
Sbjct: 87 NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA 146
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF- 857
Q GC G IEY G+ E Y Y + C + + F ++
Sbjct: 147 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYV---AREQSCR--RPNAQRFGISNYCQIY 200
Query: 858 --NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 912
N ++ + + + ++V++ + D Y+G I + D P HAV +VGY
Sbjct: 201 PPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYS 258
Query: 913 KQDNIPYWLVRNSWGPIGPDEGF 935
+ YW+VRNSW D G+
Sbjct: 259 NAQGVDYWIVRNSWDTNWGDNGY 281
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 8 DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 67
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+CA
Sbjct: 87 NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA 146
Query: 68 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF- 126
Q GC G IEY G+ E Y Y + C + + F ++
Sbjct: 147 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYV---AREQSCR--RPNAQRFGISNYCQIY 200
Query: 127 --NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 181
N ++ + + + ++V++ + D Y+G I + D P HAV +VGY
Sbjct: 201 PPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYS 258
Query: 182 KQDNIPYWLVRNSWGPIGPDEGF 204
+ YW+VRNSW D G+
Sbjct: 259 NAQGVDYWIVRNSWDTNWGDNGY 281
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)
Query: 373 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 432
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+CA
Sbjct: 87 NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA 146
Query: 433 KQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY-------RNGNGEKFKCAYDKSKVKLFT 485
Q GC G D + + IEY G+ E Y Y R N ++F + + +++
Sbjct: 147 SQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYP 201
Query: 486 GKDFLYFNGSETMKKILYKYGPLSVGL---NSHLIHFYNGTPIRKNDETCSPYDLGHAVL 542
N ++ + + + ++V + + Y+G I + D P HAV
Sbjct: 202 P------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVN 253
Query: 543 LVGYGKQDDIPYWLARNSWGPIGPDEGF 570
+VGY + YW+ RNSW D G+
Sbjct: 254 IVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 1003
HAV +VGY + YW+VRNSW D G+
Sbjct: 250 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 44/248 (17%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
+P+++D R++ P DQ +CGS WAF + + I T G++ VE S L+
Sbjct: 63 LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 122
Query: 796 ECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEKFKCA 840
C QC GC+G + + + + GL S Y PY + NG + C
Sbjct: 123 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 182
Query: 841 YD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLLNSDL 881
+ + K + ++ S++ K+I+ YK GP+ + + SD
Sbjct: 183 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 242
Query: 882 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG 941
+ +G + + GHA+ ++G+G ++ +PYWLV NSW D GFFKI RG
Sbjct: 243 LTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG 298
Query: 942 NNACGIEQ 949
N CGIE
Sbjct: 299 ENHCGIES 306
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 44/252 (17%)
Query: 7 KDGPVPDAWDWRKKNVTGPA----GDQADCGSCWAFSIAGMLEGQYAIKT-GKL-VEFSK 60
+D +P+++D R++ P DQ CGS WAF + + I T G++ VE S
Sbjct: 59 EDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSA 118
Query: 61 SQLVECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEK 105
L+ C QC GC+G + + + + GL S Y PY + NG +
Sbjct: 119 EDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGAR 178
Query: 106 FKCAYD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLL 146
C + + K + ++ S++ K+I+ YK GP+ + +
Sbjct: 179 PPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV 238
Query: 147 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFK 206
SD + +G + + GHA+ ++G+G ++ +PYWLV NSW D GFFK
Sbjct: 239 FSDFLTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFK 294
Query: 207 IERGNNACGIEQ 218
I RG N CGIE
Sbjct: 295 ILRGENHCGIES 306
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 108/250 (43%), Gaps = 47/250 (18%)
Query: 376 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 429
+P+++D R++ P DQ +CGS WAF + + I T G++ VE S L+
Sbjct: 63 LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 122
Query: 430 ECAK-QCSGCGGCDG--LEQPIEYTHQAGLESEKDY-------PYR-------------- 465
C QC GC+G + + GL S Y PY
Sbjct: 123 TCCGIQCGD--GCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 180
Query: 466 -NGNGEKFKC-----AYDKSKVKLFTGKDFLYFNGSETMKKIL---YKYGPLSVGLN--S 514
G G+ KC A + K + ++ S++ K+I+ YK GP+ S
Sbjct: 181 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 240
Query: 515 HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE 574
+ + +G + + GHA+ ++G+G ++ +PYWL NSW D GFFKI
Sbjct: 241 DFLTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKIL 296
Query: 575 RGNNACGIEQ 584
RG N CGIE
Sbjct: 297 RGENHCGIES 306
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
GHA+ ++G+G ++ +PYWLV NSW D GFFKI RG N CGIE
Sbjct: 260 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 306
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 851
Q GC G IEY G+ E Y Y + N ++F + + +++
Sbjct: 67 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 852 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 908
N ++ + + + ++V++ + D Y+G I + D P HAV +
Sbjct: 123 ------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 909 VGYGKQDNIPYWLVRNSWGPIGPDEGF 935
VGY + YW+VRNSW D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 8 DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 67
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 68 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 120
Q GC G IEY G+ E Y Y + N ++F + + +++
Sbjct: 67 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 121 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 177
N ++ + + + ++V++ + D Y+G I + D P HAV +
Sbjct: 123 ------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 178 VGYGKQDNIPYWLVRNSWGPIGPDEGF 204
VGY + YW+VRNSW D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)
Query: 373 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 432
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 433 KQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY-------RNGNGEKFKCAYDKSKVKLFT 485
Q GC G D + + IEY G+ E Y Y R N ++F + + +++
Sbjct: 67 SQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYP 121
Query: 486 GKDFLYFNGSETMKKILYKYGPLSVGL---NSHLIHFYNGTPIRKNDETCSPYDLGHAVL 542
N ++ + + + ++V + + Y+G I + D P HAV
Sbjct: 122 P------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVN 173
Query: 543 LVGYGKQDDIPYWLARNSWGPIGPDEGF 570
+VGY + YW+ RNSW D G+
Sbjct: 174 IVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
Score = 37.0 bits (84), Expect = 0.049, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 972 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 1003
HAV +VGY + YW+VRNSW D G+
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
DQ +CGSCWAF + + I T V S L C C GC+G + +
Sbjct: 85 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 144
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
+ + GL S Y PY + NG + C + K T K
Sbjct: 145 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 204
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 205 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 260
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 96/237 (40%), Gaps = 42/237 (17%)
Query: 28 DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 83
DQ CGSCWAF + + I T V S L C C GC+G + +
Sbjct: 85 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 144
Query: 84 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 121
+ + GL S Y PY + NG + C + K T K
Sbjct: 145 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 204
Query: 122 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 171
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 205 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 260
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 226
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 100/239 (41%), Gaps = 45/239 (18%)
Query: 393 DQAACGSCWAFSIAGMLEGQYAIKTGKLV--EFSKSQLVECAKQCSGCG-GCDG--LEQP 447
DQ +CGSCWAF + + I T V E S L+ C S CG GC+G +
Sbjct: 85 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG--SMCGDGCNGGYPAEA 142
Query: 448 IEYTHQAGLESEKDY-------PYR---------------NGNGEKFKCA------YDKS 479
+ + GL S Y PY G G+ KC+ Y +
Sbjct: 143 WNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPT 202
Query: 480 --KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPY 535
+ K + + N + + +YK GP+ + + S + + +G E
Sbjct: 203 YKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG-- 260
Query: 536 DLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 592
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE +AG D
Sbjct: 261 --GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 42/243 (17%)
Query: 28 DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 83
DQ CGSCWAF + + I T V S L C C GC+G + +
Sbjct: 23 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 82
Query: 84 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 121
+ + GL S Y PY + NG + C + K T K
Sbjct: 83 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 142
Query: 122 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 171
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 143 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 198
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATIDVVI 229
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYW 258
Query: 230 QRL 232
+++
Sbjct: 259 EKI 261
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
DQ +CGSCWAF + + I T V S L C C GC+G + +
Sbjct: 23 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 82
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
+ + GL S Y PY + NG + C + K T K
Sbjct: 83 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 142
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 143 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 198
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 255
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 45/245 (18%)
Query: 393 DQAACGSCWAFSIAGMLEGQYAIKTGKLV--EFSKSQLVECAKQCSGCG-GCDG--LEQP 447
DQ +CGSCWAF + + I T V E S L+ C S CG GC+G +
Sbjct: 23 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG--SMCGDGCNGGYPAEA 80
Query: 448 IEYTHQAGLESEKDY-------PYR---------------NGNGEKFKCA------YDKS 479
+ + GL S Y PY G G+ KC+ Y +
Sbjct: 81 WNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPT 140
Query: 480 --KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPY 535
+ K + + N + + +YK GP+ + + S + + +G E
Sbjct: 141 YKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG-- 198
Query: 536 DLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATIDV 593
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE +AG D
Sbjct: 199 --GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQ 256
Query: 594 VIQRL 598
+++
Sbjct: 257 YWEKI 261
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 255
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
DQ +CGSCWAF + + I T V S L C C GC+G + +
Sbjct: 24 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 83
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
+ + GL S Y PY + NG + C + K T K
Sbjct: 84 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 143
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 144 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 199
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 256
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 96/237 (40%), Gaps = 42/237 (17%)
Query: 28 DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 83
DQ CGSCWAF + + I T V S L C C GC+G + +
Sbjct: 24 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 83
Query: 84 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 121
+ + GL S Y PY + NG + C + K T K
Sbjct: 84 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 143
Query: 122 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 171
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 144 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 199
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 226
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 256
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 100/239 (41%), Gaps = 45/239 (18%)
Query: 393 DQAACGSCWAFSIAGMLEGQYAIKTGKLV--EFSKSQLVECAKQCSGCG-GCDG--LEQP 447
DQ +CGSCWAF + + I T V E S L+ C S CG GC+G +
Sbjct: 24 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG--SMCGDGCNGGYPAEA 81
Query: 448 IEYTHQAGLESEKDY-------PYR---------------NGNGEKFKCA------YDKS 479
+ + GL S Y PY G G+ KC+ Y +
Sbjct: 82 WNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPT 141
Query: 480 --KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPY 535
+ K + + N + + +YK GP+ + + S + + +G E
Sbjct: 142 YKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG-- 199
Query: 536 DLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 592
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE +AG D
Sbjct: 200 --GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 256
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 256
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
DQ +CGSCWAF + + I T V S L C C GC+G + +
Sbjct: 22 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 81
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
+ + GL S Y PY + NG + C + K T K
Sbjct: 82 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 141
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 142 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 197
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 254
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 96/237 (40%), Gaps = 42/237 (17%)
Query: 28 DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 83
DQ CGSCWAF + + I T V S L C C GC+G + +
Sbjct: 22 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 81
Query: 84 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 121
+ + GL S Y PY + NG + C + K T K
Sbjct: 82 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 141
Query: 122 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 171
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 142 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 197
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 226
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 254
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 100/239 (41%), Gaps = 45/239 (18%)
Query: 393 DQAACGSCWAFSIAGMLEGQYAIKTGK--LVEFSKSQLVECAKQCSGCG-GCDG--LEQP 447
DQ +CGSCWAF + + I T VE S L+ C S CG GC+G +
Sbjct: 22 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG--SMCGDGCNGGYPAEA 79
Query: 448 IEYTHQAGLESEKDY-------PYR---------------NGNGEKFKCA------YDKS 479
+ + GL S Y PY G G+ KC+ Y +
Sbjct: 80 WNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPT 139
Query: 480 --KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPY 535
+ K + + N + + +YK GP+ + + S + + +G E
Sbjct: 140 YKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG-- 197
Query: 536 DLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 592
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE +AG D
Sbjct: 198 --GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 254
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 254
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 98/243 (40%), Gaps = 42/243 (17%)
Query: 28 DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 83
DQ CGS WAF + + I T V S L C C GC+G + +
Sbjct: 28 DQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 87
Query: 84 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 121
+ + GL S Y PY + NG + C + K T K
Sbjct: 88 FWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYK 147
Query: 122 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 171
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 148 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 203
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATIDVVI 229
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYW 263
Query: 230 QRL 232
+++
Sbjct: 264 EKI 266
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 96/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
DQ +CGS WAF + + I T V S L C C GC+G + +
Sbjct: 28 DQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 87
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
+ + GL S Y PY + NG + C + K T K
Sbjct: 88 FWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYK 147
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
H+ N + + +YK GP+ + + SD + +G E
Sbjct: 148 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 203
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 260
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 102/245 (41%), Gaps = 45/245 (18%)
Query: 393 DQAACGSCWAFSIAGMLEGQYAIKTGK--LVEFSKSQLVECAKQCSGCG-GCDG--LEQP 447
DQ +CGS WAF + + I T VE S L+ C S CG GC+G +
Sbjct: 28 DQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG--SMCGDGCNGGYPAEA 85
Query: 448 IEYTHQAGLESEKDY-------PYR---------------NGNGEKFKCA------YDKS 479
+ + GL S Y PY G G+ KC+ Y +
Sbjct: 86 WNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPT 145
Query: 480 --KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPY 535
+ K + + N + + +YK GP+ + + S + + +G E
Sbjct: 146 YKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG-- 203
Query: 536 DLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATIDV 593
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE +AG D
Sbjct: 204 --GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQ 261
Query: 594 VIQRL 598
+++
Sbjct: 262 YWEKI 266
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 260
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 25/218 (11%)
Query: 742 VPDAWDWRK------KNVTGPAGDQAACGSCWAFSIAGMLEGQYAIK---TGKLVEFSKS 792
+P +WDWR ++T CGSCWA + + + IK S
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 793 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE-----------KFKCAY 841
+++C S C+G +Y HQ G+ E Y+ + E +FK +
Sbjct: 61 NVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 119
Query: 842 DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPY 900
L+ D+ +G E M +Y GP+S ++ ++ + +Y G + +T
Sbjct: 120 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY-- 177
Query: 901 DLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 938
+ H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 178 -INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 25/218 (11%)
Query: 11 VPDAWDWRKKNVTGPAGDQAD------CGSCWAFSIAGMLEGQYAIK---TGKLVEFSKS 61
+P +WDWR + A + CGSCWA + + + IK S
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 62 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE-----------KFKCAY 110
+++C S C+G +Y HQ G+ E Y+ + E +FK +
Sbjct: 61 NVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 119
Query: 111 DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPY 169
L+ D+ +G E M +Y GP+S ++ ++ + +Y G + +T
Sbjct: 120 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY-- 177
Query: 170 DLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 207
+ H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 178 -INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 376 VPDAWDWRK------KNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV 429
+P +WDWR ++T CGSCWA + + + IK K S V
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKR-KGAWPSTLLSV 59
Query: 430 ECAKQCSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRN-----------GNGEKFKCAY 476
+ C G C+G +Y HQ G+ E Y+ G +FK +
Sbjct: 60 QNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 119
Query: 477 DKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL--NSHLIHFYNGTPIRKNDETCSP 534
L+ D+ +G E M +Y GP+S G+ L ++ G D T
Sbjct: 120 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY-- 177
Query: 535 YDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 573
+ H V + G+G D YW+ RNSWG + G+ +I
Sbjct: 178 --INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 970 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 1006
+ H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 178 INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 25/218 (11%)
Query: 742 VPDAWDWRK------KNVTGPAGDQAACGSCWAFSIAGMLEGQYAIK---TGKLVEFSKS 792
+P +WDWR ++T CGSCWA + + + IK S
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 793 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE-----------KFKCAY 841
+++C S C+G +Y HQ G+ E Y+ + E +FK +
Sbjct: 96 NVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 154
Query: 842 DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPY 900
L+ D+ +G E M +Y GP+S ++ ++ + +Y G + +T
Sbjct: 155 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY-- 212
Query: 901 DLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 938
+ H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 213 -INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 25/218 (11%)
Query: 11 VPDAWDWRKKNVTGPAGDQAD------CGSCWAFSIAGMLEGQYAIK---TGKLVEFSKS 61
+P +WDWR + A + CGSCWA + + + IK S
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 62 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE-----------KFKCAY 110
+++C S C+G +Y HQ G+ E Y+ + E +FK +
Sbjct: 96 NVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 154
Query: 111 DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPY 169
L+ D+ +G E M +Y GP+S ++ ++ + +Y G + +T
Sbjct: 155 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY-- 212
Query: 170 DLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 207
+ H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 213 -INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 376 VPDAWDWRK------KNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV 429
+P +WDWR ++T CGSCWA + + + IK K S V
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKR-KGAWPSTLLSV 94
Query: 430 ECAKQCSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRN-----------GNGEKFKCAY 476
+ C G C+G +Y HQ G+ E Y+ G +FK +
Sbjct: 95 QNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 154
Query: 477 DKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL--NSHLIHFYNGTPIRKNDETCSP 534
L+ D+ +G E M +Y GP+S G+ L ++ G D T
Sbjct: 155 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY-- 212
Query: 535 YDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 573
+ H V + G+G D YW+ RNSWG + G+ +I
Sbjct: 213 --INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 944 ACGI---EQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPD 1000
+CGI E++A Y + +T + H V + G+G D YW+VRNSWG +
Sbjct: 187 SCGIMATERLANYTGGIYAEYQDTTY---INHVVSVAGWGISDGTEYWIVRNSWGEPWGE 243
Query: 1001 EGFFKI 1006
G+ +I
Sbjct: 244 RGWLRI 249
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 108/249 (43%), Gaps = 46/249 (18%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
+P+++D R++ P DQ +CGSCWAF + + I + G++ VE S ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 796 ECAKQCSGCDGCFFEPSIEYTH--QAGLESEKDY-------PYK------NANGEKFKCA 840
C G EPS + + GL S Y PY + NG + C
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 841 YDKSKVKLF---------TGKDFLHF---------NGSETMKKILYKYGPL--SVLLNSD 880
+ K + K+ HF N E M +I YK GP+ + + SD
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSD 179
Query: 881 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 940
+ +G + E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 180 FLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
Query: 941 GNNACGIEQ 949
G + CGIE
Sbjct: 236 GQDHCGIES 244
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 107/249 (42%), Gaps = 46/249 (18%)
Query: 11 VPDAWDWRKKNVTGPA----GDQADCGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 64
+P+++D R++ P DQ CGSCWAF + + I + G++ VE S ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 65 ECAKQCSGCDGCFFEPSIEYTH--QAGLESEKDY-------PYK------NANGEKFKCA 109
C G EPS + + GL S Y PY + NG + C
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 110 YDKSKVKLF---------TGKDFLHF---------NGSETMKKILYKYGPL--SVLLNSD 149
+ K + K+ HF N E M +I YK GP+ + + SD
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSD 179
Query: 150 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 209
+ +G + E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 180 FLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
Query: 210 GNNACGIEQ 218
G + CGIE
Sbjct: 236 GQDHCGIES 244
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 376 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKTGKLVE--------- 422
+P+++D R++ P DQ +CGSCWAF + + I + V
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 423 ----------------------FSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEK 460
++K LV S G C P H G
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVG-CRPYSIPPCEHHVNG----- 114
Query: 461 DYPYRNGNGEKFKCA------YDKS--KVKLFTGKDFLYFNGSETMKKILYKYGPL--SV 510
P G G+ KC+ Y S + K F + N + + +YK GP+ +
Sbjct: 115 SRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAF 174
Query: 511 GLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 570
+ S + + +G + E GHA+ ++G+G ++ PYWL NSW D GF
Sbjct: 175 SVYSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGF 230
Query: 571 FKIERGNNACGIEQ 584
FKI RG + CGIE
Sbjct: 231 FKILRGQDHCGIES 244
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 20/157 (12%)
Query: 742 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 796
+P +WDWR N P +QA+CGSC++F+ GMLE + I T + S ++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 797 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 855
C++ GC+G F + + +Y GL E +PY G C + + ++ +
Sbjct: 61 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFRYYSSE--Y 115
Query: 856 HFNG-------SETMKKILYKYGPLSVLLN--SDLIH 883
H+ G MK L +GP++V D +H
Sbjct: 116 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH 152
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 20/157 (12%)
Query: 11 VPDAWDWRKK---NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 65
+P +WDWR N P +QA CGSC++F+ GMLE + I T + S ++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 66 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 124
C++ GC+G F + + +Y GL E +PY G C + + ++ +
Sbjct: 61 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFRYYSSE--Y 115
Query: 125 HFNG-------SETMKKILYKYGPLSVLLN--SDLIH 152
H+ G MK L +GP++V D +H
Sbjct: 116 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH 152
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 376 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 430
+P +WDWR N P +QA+CGSC++F+ GMLE + I T + S ++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 431 CAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFL 490
C++ GC G +Y GL E +PY G C + + ++ ++
Sbjct: 61 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFRYYS-SEYH 116
Query: 491 YFNG------SETMKKILYKYGPLSVGLNSH--LIHFYNG 522
Y G MK L +GP++V + +H+ G
Sbjct: 117 YVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKG 156
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 46/249 (18%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
+P+++D R++ P DQ +CGSCWAF + + I + G++ VE S ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 796 ECAKQCSGCDGCFFEPSIEYTH--QAGLESEKDY-------PYK------NANGEKFKCA 840
C G PS + + GL S Y PY + NG + C
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 841 YDKSKVKLF---------TGKDFLHF---------NGSETMKKILYKYGPL--SVLLNSD 880
+ K + K+ HF N E M +I YK GP+ + + SD
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSD 179
Query: 881 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 940
+ +G + E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 180 FLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR 235
Query: 941 GNNACGIEQ 949
G + CGIE
Sbjct: 236 GQDHCGIES 244
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 106/249 (42%), Gaps = 46/249 (18%)
Query: 11 VPDAWDWRKKNVTGPA----GDQADCGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 64
+P+++D R++ P DQ CGSCWAF + + I + G++ VE S ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 65 ECAKQCSGCDGCFFEPSIEYTH--QAGLESEKDY-------PYK------NANGEKFKCA 109
C G PS + + GL S Y PY + NG + C
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 110 YDKSKVKLF---------TGKDFLHF---------NGSETMKKILYKYGPL--SVLLNSD 149
+ K + K+ HF N E M +I YK GP+ + + SD
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSD 179
Query: 150 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 209
+ +G + E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 180 FLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR 235
Query: 210 GNNACGIEQ 218
G + CGIE
Sbjct: 236 GQDHCGIES 244
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 376 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKTGKLVE--------- 422
+P+++D R++ P DQ +CGSCWAF + + I + V
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 423 ----------------------FSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEK 460
++K LV S G C P H G
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVG-CRPYSIPPCEHHVNGSR--- 116
Query: 461 DYPYRNGNGEKFKCA------YDKS--KVKLFTGKDFLYFNGSETMKKILYKYGPL--SV 510
P G G+ KC+ Y S + K F + N + + +YK GP+ +
Sbjct: 117 --PPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAF 174
Query: 511 GLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 570
+ S + + +G + E GHA+ ++G+G ++ PYWL NSW D GF
Sbjct: 175 SVYSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGF 230
Query: 571 FKIERGNNACGIEQ 584
FKI RG + CGIE
Sbjct: 231 FKILRGQDHCGIES 244
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE
Sbjct: 198 GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 167 SPYDL-GHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 223
+P++L HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE IA A
Sbjct: 4 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 224 T 224
T
Sbjct: 64 T 64
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 898 SPYDL-GHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 954
+P++L HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE IA A
Sbjct: 4 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 955 T 955
T
Sbjct: 64 T 64
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 966 SPYDL-GHAVLLVGYGKQD--DIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 1022
+P++L HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE IA A
Sbjct: 4 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 1023 T 1023
T
Sbjct: 64 T 64
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 533 SPYDL-GHAVLLVGYGKQD--DIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 589
+P++L HAVLLVGYG + YW+ +NSWG + G+F+I RG + C IE IA A
Sbjct: 4 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 590 T 590
T
Sbjct: 64 T 64
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 226
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 538 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 592
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE +AG D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 127 NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
N E M +I YK GP+ + + SD + +G + E GHA+ ++G+G ++
Sbjct: 108 NEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVEN 162
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 218
PYWLV NSW D GFFKI RG + CGIE
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 858 NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
N E M +I YK GP+ + + SD + +G + E GHA+ ++G+G ++
Sbjct: 108 NEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVEN 162
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 949
PYWLV NSW D GFFKI RG + CGIE
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE
Sbjct: 150 GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 482 KLFTGKDFLYFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPYDLGH 539
K F + N + + +YK GP+ + + S + + +G + E GH
Sbjct: 96 KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 151
Query: 540 AVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQ 584
A+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE
Sbjct: 152 AIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 36/235 (15%)
Query: 28 DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCD-GCFFEPSIEY 84
DQ +C + W F+ LE +K + + S + C K CD G ++
Sbjct: 26 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 85
Query: 85 THQAG-LESEKDYPYKNAN-GEKF--------------KCAYDKSKVKLFTGKDF----- 123
G L +E +YPY GE+ K ++K++ GK +
Sbjct: 86 IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYES 145
Query: 124 --LHFNGSETMKKI---LYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV 178
H N +K I + G + + ++ + Y + +K C HAV +V
Sbjct: 146 ERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVQNLCGDDTADHAVNIV 204
Query: 179 GYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 227
GYG N YW+VRNSWGP DEG+FK++ G C I +V
Sbjct: 205 GYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 259
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 91/235 (38%), Gaps = 36/235 (15%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCD-GCFFEPSIEY 815
DQ C + W F+ LE +K + + S + C K CD G ++
Sbjct: 26 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 85
Query: 816 THQAG-LESEKDYPYKNAN-GEKF--------------KCAYDKSKVKLFTGKDF----- 854
G L +E +YPY GE+ K ++K++ GK +
Sbjct: 86 IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYES 145
Query: 855 --LHFNGSETMKKI---LYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV 909
H N +K I + G + + ++ + Y + +K C HAV +V
Sbjct: 146 ERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVQNLCGDDTADHAVNIV 204
Query: 910 GYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 958
GYG N YW+VRNSWGP DEG+FK++ G C I +V
Sbjct: 205 GYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 259
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 37/236 (15%)
Query: 393 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTH 452
DQ C + W F+ LE +K + + S + C K CD P+E+
Sbjct: 26 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKG-EHKDRCDEGSSPMEFLQ 84
Query: 453 ----QAGLESEKDYPYRNGN-GEKF--------------KCAYDKSKVKLFTGKDFLYFN 493
L +E +YPY GE+ K ++K++ GK + +
Sbjct: 85 IIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYE 144
Query: 494 GS----------ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLL 543
+ +K + G + + + + Y + +K C HAV +
Sbjct: 145 SERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVQNLCGDDTADHAVNI 203
Query: 544 VGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 593
VGYG + YW+ RNSWGP DEG+FK++ G C I +V
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 259
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 972 HAVLLVGYGKQ-----DDIPYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATID 1025
HAV +VGYG + YW+VRNSWGP DEG+FK++ G C I +
Sbjct: 199 HAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFN 258
Query: 1026 V 1026
V
Sbjct: 259 V 259
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 36/235 (15%)
Query: 28 DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCD-GCFFEPSIEY 84
DQ +C + W F+ LE +K + + S + C K CD G ++
Sbjct: 27 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86
Query: 85 THQAG-LESEKDYPYKNAN-GEKF--------------KCAYDKSKVKLFTGKDF----- 123
G L +E +YPY GE+ K ++K++ GK +
Sbjct: 87 IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYES 146
Query: 124 --LHFNGSETMKKI---LYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV 178
H N +K I + G + + ++ + Y + +K C HAV +V
Sbjct: 147 ERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVKNLCGDDTADHAVNIV 205
Query: 179 GYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 227
GYG N YW+VRNSWGP DEG+FK++ G C I +V
Sbjct: 206 GYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 260
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 91/235 (38%), Gaps = 36/235 (15%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCD-GCFFEPSIEY 815
DQ C + W F+ LE +K + + S + C K CD G ++
Sbjct: 27 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86
Query: 816 THQAG-LESEKDYPYKNAN-GEKF--------------KCAYDKSKVKLFTGKDF----- 854
G L +E +YPY GE+ K ++K++ GK +
Sbjct: 87 IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYES 146
Query: 855 --LHFNGSETMKKI---LYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV 909
H N +K I + G + + ++ + Y + +K C HAV +V
Sbjct: 147 ERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVKNLCGDDTADHAVNIV 205
Query: 910 GYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 958
GYG N YW+VRNSWGP DEG+FK++ G C I +V
Sbjct: 206 GYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 260
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 948 EQIAGYA-TIDVVKNDETCSPYDLGHAVLLVGYGKQ-----DDIPYWLVRNSWGPIGPDE 1001
E + GY + VKN C HAV +VGYG + YW+VRNSWGP DE
Sbjct: 177 ENVMGYEFSGKKVKN--LCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDE 234
Query: 1002 GFFKIER-GNNACGIEQIAGYATIDV 1026
G+FK++ G C I +V
Sbjct: 235 GYFKVDMYGPTHCHFNFIHSVVIFNV 260
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 37/236 (15%)
Query: 393 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTH 452
DQ C + W F+ LE +K + + S + C K CD P+E+
Sbjct: 27 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKG-EHKDRCDEGSSPMEFLQ 85
Query: 453 ----QAGLESEKDYPYRNGN-GEKF--------------KCAYDKSKVKLFTGKDFLYFN 493
L +E +YPY GE+ K ++K++ GK + +
Sbjct: 86 IIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYE 145
Query: 494 GS----------ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLL 543
+ +K + G + + + + Y + +K C HAV +
Sbjct: 146 SERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVKNLCGDDTADHAVNI 204
Query: 544 VGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 593
VGYG + YW+ RNSWGP DEG+FK++ G C I +V
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 260
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 45/210 (21%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV------ECAKQCSGCDGCFFEPS 812
DQ GSC A ++A ++ + I + EF S+L + + G
Sbjct: 71 DQGRIGSCTANALAAAIQFE-RIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDG 129
Query: 813 IEYTHQAGLESEKDYPY----KNANGEKF------------KCAYDKSKVKLF----TGK 852
I+ H+ G+ EK++PY + E+F +C D K+ +
Sbjct: 130 IKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQ 189
Query: 853 DFLHFNGSETM-KKILYKYGPLSVLLNSDLIHDYNGTPIR-----KNDETCSPYDLGHAV 906
D H + ++ + + + + N P+R KND + GHAV
Sbjct: 190 DIDHLKACLAVGSPFVFGFSVYNSWVGN------NSLPVRIPLPTKNDTL----EGGHAV 239
Query: 907 LLVGYGKQDNIPYWLVRNSWGPIGPDEGFF 936
L VGY D I ++ +RNSWG ++G+F
Sbjct: 240 LCVGY--DDEIRHFRIRNSWGNNVGEDGYF 267
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 45/210 (21%)
Query: 28 DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV------ECAKQCSGCDGCFFEPS 81
DQ GSC A ++A ++ + I + EF S+L + + G
Sbjct: 71 DQGRIGSCTANALAAAIQFE-RIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDG 129
Query: 82 IEYTHQAGLESEKDYPY----KNANGEKF------------KCAYDKSKVKLF----TGK 121
I+ H+ G+ EK++PY + E+F +C D K+ +
Sbjct: 130 IKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQ 189
Query: 122 DFLHFNGSETM-KKILYKYGPLSVLLNSDLIHDYNGTPIR-----KNDETCSPYDLGHAV 175
D H + ++ + + + + N P+R KND + GHAV
Sbjct: 190 DIDHLKACLAVGSPFVFGFSVYNSWVGN------NSLPVRIPLPTKNDTL----EGGHAV 239
Query: 176 LLVGYGKQDNIPYWLVRNSWGPIGPDEGFF 205
L VGY D I ++ +RNSWG ++G+F
Sbjct: 240 LCVGY--DDEIRHFRIRNSWGNNVGEDGYF 267
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 34/205 (16%)
Query: 393 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV--ECAKQCSGCGGCDG---LEQP 447
DQ GSC A ++A ++ + I + EF S+L ++ G D +
Sbjct: 71 DQGRIGSCTANALAAAIQFE-RIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDG 129
Query: 448 IEYTHQAGLESEKDYPY----RNGNGEKFKCAYDKSKVK----LFTGKDFLYFNGSETMK 499
I+ H+ G+ EK++PY + E+F SK +++ S +
Sbjct: 130 IKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQ 189
Query: 500 KILYKYGPLSVGLNSHLIHFY--------NGTPIR-----KNDETCSPYDLGHAVLLVGY 546
I + L+VG + + F N P+R KND + GHAVL VGY
Sbjct: 190 DIDHLKACLAVG-SPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTL----EGGHAVLCVGY 244
Query: 547 GKQDDIPYWLARNSWGPIGPDEGFF 571
D+I ++ RNSWG ++G+F
Sbjct: 245 --DDEIRHFRIRNSWGNNVGEDGYF 267
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 971 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 1004
GHAVL VGY D+I ++ +RNSWG ++G+F
Sbjct: 236 GHAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
N YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 1 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
N YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 1 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 987 YWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 1024
YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 554 YWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
>pdb|3KE2|A Chain A, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
From Shewanella Amazonensis Sb2b At 2.50 A Resolution
pdb|3KE2|B Chain B, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
From Shewanella Amazonensis Sb2b At 2.50 A Resolution
pdb|3KE2|C Chain C, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
From Shewanella Amazonensis Sb2b At 2.50 A Resolution
Length = 117
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 156 GTPIRK-NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNAC 214
G P R D S D+G V V G++ N Y+ +R +WGPI ++ +
Sbjct: 44 GXPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIR-TWGPISSAWXDTHVDEVKSLL 102
Query: 215 GIEQIAGYAT 224
G++ G AT
Sbjct: 103 GVDDAVGQAT 112
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 887 GTPIRK-NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNAC 945
G P R D S D+G V V G++ N Y+ +R +WGPI ++ +
Sbjct: 44 GXPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIR-TWGPISSAWXDTHVDEVKSLL 102
Query: 946 GIEQIAGYAT 955
G++ G AT
Sbjct: 103 GVDDAVGQAT 112
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 376 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT 417
+P ++D R++ P DQ +CGSCWAF + + I T
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 46
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT 783
+P ++D R++ P DQ +CGSCWAF + + I T
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 46
>pdb|3GTN|A Chain A, Crystal Structure Of Xync From Bacillus Subtilis 168
pdb|3GTN|B Chain B, Crystal Structure Of Xync From Bacillus Subtilis 168
pdb|3KL0|A Chain A, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|B Chain B, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|C Chain C, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|D Chain D, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL3|A Chain A, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|B Chain B, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|C Chain C, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|D Chain D, Crystal Structure Of Ligand Bound Xync
pdb|3KL5|A Chain A, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|B Chain B, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|C Chain C, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|D Chain D, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
Length = 401
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA--GYATIDVVKNDET---CSPYDLGHA 973
+W +R S+GP+ D K RG N + GY ID KN S Y +
Sbjct: 267 WWYIRRSYGPMKEDGTISK--RGYNMAHFSKFVRPGYVRIDATKNPNANVYVSAYKGDNK 324
Query: 974 VLLVGYGKQD 983
V++V K +
Sbjct: 325 VVIVAINKSN 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,920,823
Number of Sequences: 62578
Number of extensions: 1540471
Number of successful extensions: 4495
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3473
Number of HSP's gapped (non-prelim): 509
length of query: 1026
length of database: 14,973,337
effective HSP length: 109
effective length of query: 917
effective length of database: 8,152,335
effective search space: 7475691195
effective search space used: 7475691195
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)