RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7460
(1026 letters)
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 231 bits (591), Expect = 1e-68
Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 27/320 (8%)
Query: 653 NILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGTSEFSDRSPEEIL 707
+ ++TF+ + + YA E+ + + F + + + SD S +E
Sbjct: 3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG----AINHLSDLSLDEFK 58
Query: 708 CK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSC 766
+ + + + + +G P D R+ P Q CGS
Sbjct: 59 NRFLMSAEAFEHLKT----QFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114
Query: 767 WAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKD 826
WAFS E Y + ++ ++ +LV+CA Q GC G IEY G+ E
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVVQESY 173
Query: 827 YPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYK-YGPLSVLLNSDLIHD- 884
Y Y C ++ + ++ + +++ L + + ++V++ +
Sbjct: 174 YRYVAREQ---SCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAF 230
Query: 885 --YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN 942
Y+G I HAV +VGY + YW+VRNSW D G+
Sbjct: 231 RHYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANI 288
Query: 943 NACGIEQIAGYATIDVVKND 962
+ I Y + ++
Sbjct: 289 DLMM---IEEYPYVVILGQT 305
Score = 228 bits (583), Expect = 2e-67
Identities = 63/320 (19%), Positives = 110/320 (34%), Gaps = 35/320 (10%)
Query: 287 NILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGTSEFSDRSPEEIL 341
+ ++TF+ + + YA E+ + + F + + + SD S +E
Sbjct: 3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG----AINHLSDLSLDEFK 58
Query: 342 CK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSC 400
+ + + + + +G P D R+ P Q CGS
Sbjct: 59 NRFLMSAEAFEHLKT----QFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114
Query: 401 WAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESE 459
WAFS E Y + ++ ++ +LV+CA Q GC G + IEY G+ E
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ-HGCHG--DTIPRGIEYIQHNGVVQE 171
Query: 460 KDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET--MKKILYKYGPLSVGLN- 513
Y Y C ++ + Y + + + + ++V +
Sbjct: 172 SYYRYVAREQ---SCRRPNAQRFGISN----YCQIYPPNANKIREALAQTHSAIAVIIGI 224
Query: 514 SHLI--HFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFF 571
L Y+G I HAV +VGY + YW+ RNSW D G+
Sbjct: 225 KDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYG 282
Query: 572 KIERGNNACGIEQIAGYATI 591
+ IE+ +
Sbjct: 283 YFAANIDLMMIEEYPYVVIL 302
Score = 204 bits (522), Expect = 3e-59
Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 10/224 (4%)
Query: 6 EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+
Sbjct: 85 SINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVD 144
Query: 66 CAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH 125
CA Q GC G IEY G+ E Y Y C ++ + ++
Sbjct: 145 CASQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQ---SCRRPNAQRFGISNYCQIY 200
Query: 126 FNGSETMKKILYK-YGPLSVLLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYG 181
+ +++ L + + ++V++ + Y+G I HAV +VGY
Sbjct: 201 PPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYS 258
Query: 182 KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
+ YW+VRNSW D G+ + IE+ +
Sbjct: 259 NAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 302
Score = 89.2 bits (222), Expect = 2e-19
Identities = 17/66 (25%), Positives = 24/66 (36%)
Query: 959 VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 1018
HAV +VGY + YW+VRNSW D G+ + IE+
Sbjct: 237 TIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEY 296
Query: 1019 AGYATI 1024
+
Sbjct: 297 PYVVIL 302
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 231 bits (592), Expect = 1e-68
Identities = 91/322 (28%), Positives = 144/322 (44%), Gaps = 37/322 (11%)
Query: 290 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 337
E + F + + Y++ E R FK H K E+ + +F D S
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 338 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 397
EE F + + + + V P+ + DWR V+ DQ C
Sbjct: 85 EE------FL-AYVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSNAVS-EVKDQGQC 136
Query: 398 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAG 455
GS W+FS G +EGQ A++ G+L S+ L++C+ G GCDG ++ Y H G
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSY-GNAGCDGGWMDSAFSYIHDYG 195
Query: 456 LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVG 511
+ SE YPY + C +D S+ Y++ G E + + + GP++V
Sbjct: 196 IMSESAYPYE---AQGDYCRFDSSQS---VTTLSGYYDLPSGDENSLADAVGQAGPVAVA 249
Query: 512 LN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 570
++ + + FY+G D+TC+ DL H VL+VGYG + YW+ +NSWG + G+
Sbjct: 250 IDATDELQFYSGGLF--YDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGY 307
Query: 571 FKIERG-NNACGIEQIAGYATI 591
++ R N CGI A Y +
Sbjct: 308 WRQVRNYGNNCGIATAASYPAL 329
Score = 230 bits (588), Expect = 5e-68
Identities = 89/318 (27%), Positives = 145/318 (45%), Gaps = 30/318 (9%)
Query: 656 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 703
E + F + + Y++ E R FK H K E+ + +F D S
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 704 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 763
EE F + + + + V P+ + DWR V+ DQ C
Sbjct: 85 EE------FL-AYVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSNAVS-EVKDQGQC 136
Query: 764 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC--SGCDGCFFEPSIEYTHQAGL 821
GS W+FS G +EGQ A++ G+L S+ L++C+ +GCDG + + + Y H G+
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGI 196
Query: 822 ESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN-S 879
SE YPY+ C +D S+ +G L ++ + + GP++V ++ +
Sbjct: 197 MSESAYPYEAQGD---YCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDAT 253
Query: 880 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIE 939
D + Y+G D+TC+ DL H VL+VGYG + YW+++NSWG + G+++
Sbjct: 254 DELQFYSGGLF--YDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQV 311
Query: 940 RG-NNACGIEQIAGYATI 956
R N CGI A Y +
Sbjct: 312 RNYGNNCGIATAASYPAL 329
Score = 207 bits (528), Expect = 9e-60
Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 11/226 (4%)
Query: 5 VEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV 64
V P+ + DWR V+ DQ CGS W+FS G +EGQ A++ G+L S+ L+
Sbjct: 110 VSSKKPLAASVDWRSNAVS-EVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLI 168
Query: 65 ECAKQC--SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGK 121
+C+ +GCDG + + + Y H G+ SE YPY+ C +D S+ +G
Sbjct: 169 DCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYEAQGD---YCRFDSSQSVTTLSGY 225
Query: 122 DFLHFNGSETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGY 180
L ++ + + GP++V ++ +D + Y+G D+TC+ DL H VL+VGY
Sbjct: 226 YDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLF--YDQTCNQSDLNHGVLVVGY 283
Query: 181 GKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
G + YW+++NSWG + G+++ R N CGI A Y +
Sbjct: 284 GSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYPAL 329
Score = 84.6 bits (210), Expect = 1e-17
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 961 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
D+TC+ DL H VL+VGYG + YW+++NSWG + G+++ R N CGI A
Sbjct: 265 YDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAA 324
Query: 1020 GYATI 1024
Y +
Sbjct: 325 SYPAL 329
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 231 bits (592), Expect = 1e-68
Identities = 95/337 (28%), Positives = 152/337 (45%), Gaps = 41/337 (12%)
Query: 646 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 696
+ + E ++ F R Y N +E R + F++ + H +K+ + S
Sbjct: 10 GSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL 69
Query: 697 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 752
F+D +PEE+ G ++ + + + + + + P ++DWR +
Sbjct: 70 GVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTRED---LGLNASVRYPASFDWRDQG 126
Query: 753 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKS--QLVECAKQCSGCDGCFFE 810
+ P +Q +CGS WAFS G +E Q I G + S S QLV+C GC G +
Sbjct: 127 MVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMN 186
Query: 811 PSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILY 868
+ Y Q G++SE YPY+ A+G C YD ++V +G +L + ++
Sbjct: 187 DAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVA 243
Query: 869 KYGPLSVLLNSDLIHD--------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
GP++V ++D Y TC HAVL+VGYG ++ YW
Sbjct: 244 TKGPVAVAFDAD--DPFGSYSGGVYYN-------PTCETNKFTHAVLIVGYGNENGQDYW 294
Query: 921 LVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
LV+NSWG +G+FKI R NN CGI +A T+
Sbjct: 295 LVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
Score = 228 bits (584), Expect = 1e-67
Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 36/335 (10%)
Query: 280 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 330
+ + E ++ F R Y N +E R + F++ + H +K+ + S
Sbjct: 10 GSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL 69
Query: 331 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 386
F+D +PEE+ G ++ + + + + + + P ++DWR +
Sbjct: 70 GVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTRED---LGLNASVRYPASFDWRDQG 126
Query: 387 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKS--QLVECAKQCSGCGGCDGL 444
+ P +Q +CGS WAFS G +E Q I G + S S QLV+C GC G G
Sbjct: 127 MVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSG--GW 184
Query: 445 -EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-M 498
Y Q G++SE YPY C YD ++V + Y E +
Sbjct: 185 MNDAFTYVAQNGGIDSEGAYPYE---MADGNCHYDPNQV---AARLSGYVYLSGPDENML 238
Query: 499 KKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLA 557
++ GP++V + Y+G + TC HAVL+VGYG ++ YWL
Sbjct: 239 ADMVATKGPVAVAFDADDPFGSYSGGVY--YNPTCETNKFTHAVLIVGYGNENGQDYWLV 296
Query: 558 RNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+NSWG +G+FKI R NN CGI +A T+
Sbjct: 297 KNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
Score = 205 bits (523), Expect = 4e-59
Identities = 78/236 (33%), Positives = 113/236 (47%), Gaps = 25/236 (10%)
Query: 3 MEVEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKS- 61
+ + P ++DWR + + P +Q CGS WAFS G +E Q I G + S S
Sbjct: 108 LGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSE 167
Query: 62 -QLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLF- 118
QLV+C GC G + + Y Q G++SE YPY+ A+G C YD ++V
Sbjct: 168 QQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQVAARL 224
Query: 119 TGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETCSPYD 170
+G +L + ++ GP++V ++D Y TC
Sbjct: 225 SGYVYLSGPDENMLADMVATKGPVAVAFDAD--DPFGSYSGGVYYN-------PTCETNK 275
Query: 171 LGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
HAVL+VGYG ++ YWLV+NSWG +G+FKI R NN CGI +A T+
Sbjct: 276 FTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
Score = 87.7 bits (218), Expect = 1e-18
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 961 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
+ TC HAVL+VGYG ++ YWLV+NSWG +G+FKI R NN CGI +A
Sbjct: 267 YNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVA 326
Query: 1020 GYATI 1024
T+
Sbjct: 327 SVPTL 331
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 223 bits (572), Expect = 2e-67
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 6/217 (2%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P WDWR K DQ CGSCWAFS+ G +EGQ+ + G L+ S+ +L++C K
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 72 GCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
C G + GLE+E DY Y+ C + K K+ +D + + +E
Sbjct: 62 ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKV-YIQDSVELSQNE 117
Query: 131 T-MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
+ L K GP+SV +N+ + Y R CSP+ + HAVLLVGYG++ ++P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 190 LVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 226
++NSWG ++G++ + RG+ ACG+ +A A +D
Sbjct: 178 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214
Score = 223 bits (571), Expect = 3e-67
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 6/217 (2%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P WDWR K DQ CGSCWAFS+ G +EGQ+ + G L+ S+ +L++C K
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 803 GCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
C G + GLE+E DY Y+ C + K K+ +D + + +E
Sbjct: 62 ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKV-YIQDSVELSQNE 117
Query: 862 T-MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
+ L K GP+SV +N+ + Y R CSP+ + HAVLLVGYG++ ++P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 921 LVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 957
++NSWG ++G++ + RG+ ACG+ +A A +D
Sbjct: 178 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214
Score = 223 bits (570), Expect = 4e-67
Identities = 80/219 (36%), Positives = 118/219 (53%), Gaps = 9/219 (4%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P WDWR K DQ CGSCWAFS+ G +EGQ+ + G L+ S+ +L++C K
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 437 GCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
C G GL GLE+E DY Y+ C + K K+ +D + +
Sbjct: 62 ACMG--GLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKV-YIQDSVELSQ 115
Query: 495 SET-MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
+E + L K GP+SV +N+ + FY R CSP+ + HAVLLVGYG++ D+P
Sbjct: 116 NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVP 175
Query: 554 YWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 592
+W +NSWG ++G++ + RG+ ACG+ +A A +D
Sbjct: 176 FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214
Score = 96.0 bits (240), Expect = 2e-22
Identities = 28/64 (43%), Positives = 45/64 (70%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 1021
CSP+ + HAVLLVGYG++ D+P+W ++NSWG ++G++ + RG+ ACG+ +A
Sbjct: 151 RPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 210
Query: 1022 ATID 1025
A +D
Sbjct: 211 AVVD 214
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 225 bits (575), Expect = 2e-66
Identities = 89/325 (27%), Positives = 142/325 (43%), Gaps = 44/325 (13%)
Query: 290 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 337
+ + + ++Y ++ + R +++ H +H+ + +F+D +
Sbjct: 3 DLWHQWKRMYNKEYNGADD-QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 338 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 397
EE K + S + + + + VPD DWR+ DQ C
Sbjct: 62 EEFKAKYLTEMSRA--------SDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNC 113
Query: 398 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAG 455
GS WAFS G +EGQY + FS+ QLV+C++ G GC G +E +Y Q G
Sbjct: 114 GSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW-GNNGCGGGLMENAYQYLKQFG 172
Query: 456 LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVG 511
LE+E YPY + +C Y+K K ++ GSE +K ++ GP +V
Sbjct: 173 LETESSYPYT---AVEGQCRYNKQLG---VAKVTGFYTVHSGSEVELKNLVGAEGPAAVA 226
Query: 512 LN-SHLIHFYNGTPIRK---NDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPD 567
++ Y R +TCSP + HAVL VGYG Q YW+ +NSWG +
Sbjct: 227 VDVESDFMMY-----RSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGE 281
Query: 568 EGFFKIERG-NNACGIEQIAGYATI 591
G+ ++ R N CGI +A +
Sbjct: 282 RGYIRMVRNRGNMCGIASLASLPMV 306
Score = 224 bits (572), Expect = 5e-66
Identities = 89/325 (27%), Positives = 142/325 (43%), Gaps = 45/325 (13%)
Query: 656 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 703
+ + + ++Y ++ + R +++ H +H+ + +F+D +
Sbjct: 3 DLWHQWKRMYNKEYNGADD-QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 704 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 763
EE K + S + + + + VPD DWR+ DQ C
Sbjct: 62 EEFKAKYLTEMSRA--------SDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNC 113
Query: 764 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC--SGCDGCFFEPSIEYTHQAGL 821
GS WAFS G +EGQY + FS+ QLV+C++ +GC G E + +Y Q GL
Sbjct: 114 GSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGL 173
Query: 822 ESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLNSD 880
E+E YPY G +C Y+K TG +H +K ++ GP +V ++ +
Sbjct: 174 ETESSYPYTAVEG---QCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVE 230
Query: 881 LIHD--------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPD 932
D Y +TCSP + HAVL VGYG Q YW+V+NSWG +
Sbjct: 231 --SDFMMYRSGIYQS-------QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGE 281
Query: 933 EGFFKIERG-NNACGIEQIAGYATI 956
G+ ++ R N CGI +A +
Sbjct: 282 RGYIRMVRNRGNMCGIASLASLPMV 306
Score = 204 bits (521), Expect = 4e-59
Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 24/230 (10%)
Query: 8 DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 67
+ VPD DWR+ DQ +CGS WAFS G +EGQY + FS+ QLV+C+
Sbjct: 89 NRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCS 148
Query: 68 KQC--SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFL 124
+ +GC G E + +Y Q GLE+E YPY G +C Y+K TG +
Sbjct: 149 RPWGNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEG---QCRYNKQLGVAKVTGFYTV 205
Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETCSPYDLGHAVL 176
H +K ++ GP +V ++ + D Y +TCSP + HAVL
Sbjct: 206 HSGSEVELKNLVGAEGPAAVAVDVE--SDFMMYRSGIYQS-------QTCSPLRVNHAVL 256
Query: 177 LVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
VGYG Q YW+V+NSWG + G+ ++ R N CGI +A +
Sbjct: 257 AVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV 306
Score = 84.6 bits (210), Expect = 9e-18
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 961 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
+TCSP + HAVL VGYG Q YW+V+NSWG + G+ ++ R N CGI +A
Sbjct: 242 QSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301
Query: 1020 GYATI 1024
+
Sbjct: 302 SLPMV 306
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 224 bits (574), Expect = 2e-66
Identities = 91/328 (27%), Positives = 146/328 (44%), Gaps = 35/328 (10%)
Query: 649 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 696
+ E + ++ + +QY N + R +++ H + +
Sbjct: 2 YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61
Query: 697 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 756
D + EE + T ++ + L E +G PD+ D+RKK P
Sbjct: 62 HLGDMTSEE------VV-QKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTP 114
Query: 757 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY- 815
+Q CGSCWAFS G LEGQ KTGKL+ S LV+C + GC G + + +Y
Sbjct: 115 VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYV 174
Query: 816 THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLS 874
G++SE YPY C Y+ + G + + +K+ + + GP+S
Sbjct: 175 QKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVS 231
Query: 875 VLLNSDLI--HDYNGTPIRK---NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI 929
V +++ L Y K DE+C+ +L HAVL VGYG Q +W+++NSWG
Sbjct: 232 VAIDASLTSFQFY-----SKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGEN 286
Query: 930 GPDEGFFKIERG-NNACGIEQIAGYATI 956
++G+ + R NNACGI +A + +
Sbjct: 287 WGNKGYILMARNKNNACGIANLASFPKM 314
Score = 223 bits (570), Expect = 8e-66
Identities = 97/335 (28%), Positives = 150/335 (44%), Gaps = 48/335 (14%)
Query: 283 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 330
+ E + ++ + +QY N + R +++ H + +
Sbjct: 2 YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61
Query: 331 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 390
D + EE + T ++ + L E +G PD+ D+RKK P
Sbjct: 62 HLGDMTSEE------VV-QKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTP 114
Query: 391 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIE 449
+Q CGSCWAFS G LEGQ KTGKL+ S LV+C + GCGG G +
Sbjct: 115 VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG--GYMTNAFQ 172
Query: 450 Y-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYK 504
Y G++SE YPY G++ C Y+ + K Y G+E +K+ + +
Sbjct: 173 YVQKNRGIDSEDAYPYV---GQEESCMYNPTGK---AAKCRGYREIPEGNEKALKRAVAR 226
Query: 505 YGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLA 557
GP+SV +++ L F Y DE+C+ +L HAVL VGYG Q +W+
Sbjct: 227 VGPVSVAIDASLTSFQFYSKGVY-------YDESCNSDNLNHAVLAVGYGIQKGNKHWII 279
Query: 558 RNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+NSWG ++G+ + R NNACGI +A + +
Sbjct: 280 KNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
Score = 201 bits (513), Expect = 6e-58
Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 16/228 (7%)
Query: 6 EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
E +G PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+
Sbjct: 95 EWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVD 154
Query: 66 CAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDF 123
C + GC G + + +Y G++SE YPY C Y+ + G
Sbjct: 155 CVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYRE 211
Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRK---NDETCSPYDLGHAVLLV 178
+ + +K+ + + GP+SV +++ L Y K DE+C+ +L HAVL V
Sbjct: 212 IPEGNEKALKRAVARVGPVSVAIDASLTSFQFY-----SKGVYYDESCNSDNLNHAVLAV 266
Query: 179 GYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
GYG Q +W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 267 GYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
Score = 83.4 bits (207), Expect = 2e-17
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 961 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 250 YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA 309
Query: 1020 GYATI 1024
+ +
Sbjct: 310 SFPKM 314
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 215 bits (550), Expect = 3e-64
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 72 GCDGCFFEPSIEYTHQA---GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFN 127
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYGKQD 184
+ L GP++V +++ Y G T C L H VLLVGY
Sbjct: 122 -EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS-------CVSEQLDHGVLLVGYNDSA 173
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
+PYW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 215 bits (549), Expect = 3e-64
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQA---GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFN 858
GC G + E+ Q + +E YPY + G C V TG L +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYGKQD 915
+ L GP++V +++ Y G T C L H VLLVGY
Sbjct: 122 -EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS-------CVSEQLDHGVLLVGYNDSA 173
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
+PYW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 213 bits (546), Expect = 1e-63
Identities = 71/223 (31%), Positives = 100/223 (44%), Gaps = 18/223 (8%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P A DWR + DQ CGSCWAFS G +E Q+ + L S+ LV C K S
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 437 GCGGCDGLE----QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
GC G GL + I + + +E YPY +G G C V T +
Sbjct: 62 GCSG--GLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGA-TITGHVEL 118
Query: 493 NGSET-MKKILYKYGPLSVGLNSHLIHFYNG---TPIRKNDETCSPYDLGHAVLLVGYGK 548
E + L GP++V +++ Y G T C L H VLLVGY
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS-------CVSEQLDHGVLLVGYND 171
Query: 549 QDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
+PYW+ +NSW +EG+ +I +G+N C +++ A A +
Sbjct: 172 SAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
Score = 91.4 bits (228), Expect = 6e-21
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 965 CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 1024
C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A +
Sbjct: 155 CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 218 bits (557), Expect = 6e-64
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 50/336 (14%)
Query: 283 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 330
+ + + + G+QY E R +++ H +H S
Sbjct: 3 HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62
Query: 331 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 390
D + EE + + + + + +PD+ DWR+K
Sbjct: 63 HLGDMTSEE------VM---SLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTE 113
Query: 391 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPI 448
Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ + G GC+G +
Sbjct: 114 VKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAF 173
Query: 449 EY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILY 503
+Y G++S+ YPY+ + KC YD Y G E +K+ +
Sbjct: 174 QYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYR---AATCSKYTELPYGREDVLKEAVA 227
Query: 504 KYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWL 556
GP+SVG+++ F Y + +C+ ++ H VL+VGYG + YWL
Sbjct: 228 NKGPVSVGVDARHPSFFLYRSGVY-------YEPSCTQ-NVNHGVLVVGYGDLNGKEYWL 279
Query: 557 ARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
+NSWG +EG+ ++ R N CGI Y I
Sbjct: 280 VKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
Score = 213 bits (545), Expect = 2e-62
Identities = 86/329 (26%), Positives = 139/329 (42%), Gaps = 37/329 (11%)
Query: 649 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 696
+ + + + G+QY E R +++ H +H S
Sbjct: 3 HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62
Query: 697 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 756
D + EE + + + + + +PD+ DWR+K
Sbjct: 63 HLGDMTSEE------VM---SLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTE 113
Query: 757 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGC---FFEPSI 813
Q +CG+ WAFS G LE Q +KTGKLV S LV+C+ + G GC F +
Sbjct: 114 VKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAF 173
Query: 814 EY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYG 871
+Y G++S+ YPYK + KC YD + L + + +K+ + G
Sbjct: 174 QYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 230
Query: 872 PLSVLLNSDLI--HDY-NGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGP 928
P+SV +++ Y +G + +C+ ++ H VL+VGYG + YWLV+NSWG
Sbjct: 231 PVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGH 286
Query: 929 IGPDEGFFKIERG-NNACGIEQIAGYATI 956
+EG+ ++ R N CGI Y I
Sbjct: 287 NFGEEGYIRMARNKGNHCGIASFPSYPEI 315
Score = 191 bits (487), Expect = 2e-54
Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 16/229 (6%)
Query: 6 EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
+ +PD+ DWR+K Q CG+ WAFS G LE Q +KTGKLV S LV+
Sbjct: 94 NPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVD 153
Query: 66 CAKQCSGCDGC---FFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TG 120
C+ + G GC F + +Y G++S+ YPYK + KC YD +
Sbjct: 154 CSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSK 210
Query: 121 KDFLHFNGSETMKKILYKYGPLSVLLNSDLI--HDY-NGTPIRKNDETCSPYDLGHAVLL 177
L + + +K+ + GP+SV +++ Y +G + +C+ ++ H VL+
Sbjct: 211 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLV 266
Query: 178 VGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 267 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
Score = 78.8 bits (195), Expect = 7e-16
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 959 VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQ 1017
V + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 250 VYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 308
Query: 1018 IAGYATI 1024
Y I
Sbjct: 309 FPSYPEI 315
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 215 bits (551), Expect = 5e-63
Identities = 94/330 (28%), Positives = 145/330 (43%), Gaps = 45/330 (13%)
Query: 651 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSEFSDRS 702
E +++ F ++++ + Y N +E RFE FK D KK+ Y G +EF+D S
Sbjct: 15 TERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLS 74
Query: 703 PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAA 762
+E F + I A E+ E +P+ DWRKK P Q +
Sbjct: 75 NDE------FN-EKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGS 127
Query: 763 CGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLE 822
CGSCWAFS +EG I+TGKLVE S+ +LV+C ++ GC G + ++EY + G+
Sbjct: 128 CGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIH 187
Query: 823 SEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSD 880
YPYK G C + + + N + + K P+SV++ S
Sbjct: 188 LRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESK 243
Query: 881 LIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGP 931
+ G C + AV VGYGK Y L++NSWG
Sbjct: 244 --GRPFQLYKGGIFEG--------PCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWG 292
Query: 932 DEGFFKIERGNNA----CGIEQIAGYATID 957
++G+ +I+R CG+ + + Y T +
Sbjct: 293 EKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 322
Score = 214 bits (547), Expect = 2e-62
Identities = 94/330 (28%), Positives = 144/330 (43%), Gaps = 44/330 (13%)
Query: 285 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSEFSDRS 336
E +++ F ++++ + Y N +E RFE FK D KK+ Y G +EF+D S
Sbjct: 15 TERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLS 74
Query: 337 PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAA 396
+E F + I A E+ E +P+ DWRKK P Q +
Sbjct: 75 NDE------FN-EKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGS 127
Query: 397 CGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAG 455
CGSCWAFS +EG I+TGKLVE S+ +LV+C ++ GC G G +EY + G
Sbjct: 128 CGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKG--GYPPYALEYVAKNG 185
Query: 456 LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF-NGSET-MKKILYKYGPLSVGLN 513
+ YPY+ ++ C + + +E + + K P+SV +
Sbjct: 186 IHLRSKYPYK---AKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVE 241
Query: 514 SHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGP 566
S F + G C + AV VGYGK Y L +NSWG
Sbjct: 242 SKGRPFQLYKGGIFEG--------PCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWG 292
Query: 567 DEGFFKIERGNNA----CGIEQIAGYATID 592
++G+ +I+R CG+ + + Y T +
Sbjct: 293 EKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 322
Score = 190 bits (484), Expect = 7e-54
Identities = 70/236 (29%), Positives = 105/236 (44%), Gaps = 30/236 (12%)
Query: 6 EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
E +P+ DWRKK P Q CGSCWAFS +EG I+TGKLVE S+ +LV+
Sbjct: 102 EDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVD 161
Query: 66 CAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF-- 123
C ++ GC G + ++EY + G+ YPYK G C + +
Sbjct: 162 CERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGR 218
Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHA 174
+ N + + K P+SV++ S + G C + A
Sbjct: 219 VQPNNEGNLLNAIAK-QPVSVVVESK--GRPFQLYKGGIFEG--------PCGT-KVDGA 266
Query: 175 VLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
V VGYGK Y L++NSWG ++G+ +I+R CG+ + + Y T +
Sbjct: 267 VTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 322
Score = 75.4 bits (186), Expect = 1e-14
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
+ C + AV VGYGK Y L++NSWG ++G+ +I+R CG+ +
Sbjct: 256 EGPCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYK 314
Query: 1018 IAGYATID 1025
+ Y T +
Sbjct: 315 SSYYPTKN 322
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 215 bits (550), Expect = 5e-63
Identities = 97/341 (28%), Positives = 148/341 (43%), Gaps = 54/341 (15%)
Query: 280 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 330
SLTFD ++ + + R Y +EE R +++ + H +++ S
Sbjct: 1 SLTFD-HSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTM 58
Query: 331 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 386
F D + EE GF+ + ++ + E P + DWR+K
Sbjct: 59 AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE-----------APRSVDWREKG 107
Query: 387 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--L 444
P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ G GC+G +
Sbjct: 108 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLM 166
Query: 445 EQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKIL 502
+ +Y GL+SE+ YPY + C Y+ F+ E + K +
Sbjct: 167 DYAFQYVQDNGGLDSEESYPYE---ATEESCKYNPKYSVA-NDAGFVDIPKQEKALMKAV 222
Query: 503 YKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDD 551
GP+SV +++ F Y + CS D+ H VL+VGYG + D+
Sbjct: 223 ATVGPISVAIDAGHESFLFYKEGIY-------FEPDCSSEDMDHGVLVVGYGFESTESDN 275
Query: 552 IPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 276 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
Score = 214 bits (546), Expect = 2e-62
Identities = 98/342 (28%), Positives = 149/342 (43%), Gaps = 57/342 (16%)
Query: 646 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 696
SLTFD ++ + + R Y +EE R +++ + H +++ S
Sbjct: 1 SLTFD-HSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTM 58
Query: 697 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 752
F D + EE GF+ + ++ + E P + DWR+K
Sbjct: 59 AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE-----------APRSVDWREKG 107
Query: 753 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFE 810
P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+ GC+G +
Sbjct: 108 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMD 167
Query: 811 PSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILY 868
+ +Y GL+SE+ YPY+ C Y+ F+ E + K +
Sbjct: 168 YAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDAGFVDIPKQEKALMKAVA 223
Query: 869 KYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYG----KQD 915
GP+SV +++ H+ Y + CS D+ H VL+VGYG + D
Sbjct: 224 TVGPISVAIDAG--HESFLFYKEGIY-------FEPDCSSEDMDHGVLVVGYGFESTESD 274
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
N YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 275 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
Score = 192 bits (490), Expect = 9e-55
Identities = 79/238 (33%), Positives = 112/238 (47%), Gaps = 31/238 (13%)
Query: 6 EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+
Sbjct: 92 PLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVD 151
Query: 66 CAKQ--CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKD 122
C+ GC+G + + +Y GL+SE+ YPY+ C Y+
Sbjct: 152 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDAG 207
Query: 123 FLHFNGSET-MKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLG 172
F+ E + K + GP+SV +++ H+ Y + CS D+
Sbjct: 208 FVDIPKQEKALMKAVATVGPISVAIDAG--HESFLFYKEGIY-------FEPDCSSEDMD 258
Query: 173 HAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
H VL+VGYG + DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 259 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
Score = 79.2 bits (196), Expect = 6e-16
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 959 VKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNAC 1013
+ + CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N C
Sbjct: 246 IYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 305
Query: 1014 GIEQIAGYATI 1024
GI A Y T+
Sbjct: 306 GIASAASYPTV 316
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 207 bits (530), Expect = 2e-61
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 10/222 (4%)
Query: 8 DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 67
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 68 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
Q GC G IEY G+ E Y Y C ++ + ++
Sbjct: 67 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQ---SCRRPNAQRFGISNYCQIYPP 122
Query: 128 GSETMKKILYK-YGPLSVLLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 183
+ +++ L + + ++V++ + Y+G I HAV +VGY
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSNA 180
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
+ YW+VRNSW D G+ + IE+ +
Sbjct: 181 QGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 222
Score = 207 bits (529), Expect = 3e-61
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 10/222 (4%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+CA
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
Q GC G IEY G+ E Y Y C ++ + ++
Sbjct: 67 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQ---SCRRPNAQRFGISNYCQIYPP 122
Query: 859 GSETMKKILYK-YGPLSVLLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 914
+ +++ L + + ++V++ + Y+G I HAV +VGY
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSNA 180
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
+ YW+VRNSW D G+ + IE+ +
Sbjct: 181 QGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 222
Score = 203 bits (518), Expect = 8e-60
Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 23/229 (10%)
Query: 373 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 432
+G P D R+ P Q CGS WAFS E Y + ++ ++ +LV+
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRQQSLDLAEQELVD-- 64
Query: 433 KQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFL 490
C+ GC G + + IEY G+ E Y Y C ++ +
Sbjct: 65 --CASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQ---SCRRPNAQRFGISN---- 115
Query: 491 YFN---GSET--MKKILYKYGPLSVGLN-SHLI--HFYNGTPIRKNDETCSPYDLGHAVL 542
Y + + + + ++V + L Y+G I HAV
Sbjct: 116 YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI--IQRDNGYQPNYHAVN 173
Query: 543 LVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
+VGY + YW+ RNSW D G+ + IE+ +
Sbjct: 174 IVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 222
Score = 89.5 bits (223), Expect = 3e-20
Identities = 17/66 (25%), Positives = 24/66 (36%)
Query: 959 VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 1018
HAV +VGY + YW+VRNSW D G+ + IE+
Sbjct: 157 TIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEY 216
Query: 1019 AGYATI 1024
+
Sbjct: 217 PYVVIL 222
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 210 bits (537), Expect = 8e-60
Identities = 82/317 (25%), Positives = 129/317 (40%), Gaps = 31/317 (9%)
Query: 663 VKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGT----SEFSDRSPEEILCKTGFK 713
V + + + K +K ++ T E+ + +++ ++G
Sbjct: 125 VYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSG-- 182
Query: 714 WSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK---NVTGPAGDQAACGSCWAFS 770
+ R + + +K +P +WDWR N P +QA+CGSC++F+
Sbjct: 183 ----GHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFA 238
Query: 771 IAGMLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDY 827
GMLE + I T S ++V C++ GC+G F Q GL E +
Sbjct: 239 SMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACF 298
Query: 828 PYKNANGE-KFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN--SDLIH 883
PY + K K + + + +E MK L +GP++V D +H
Sbjct: 299 PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH 358
Query: 884 DYNG---TPIRKNDETCSPYDLGHAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFFKI 938
Y D HAVLLVGYG + YW+V+NSWG + G+F+I
Sbjct: 359 -YKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRI 417
Query: 939 ERGNNACGIEQIAGYAT 955
RG + C IE IA AT
Sbjct: 418 RRGTDECAIESIAVAAT 434
Score = 208 bits (531), Expect = 5e-59
Identities = 81/318 (25%), Positives = 127/318 (39%), Gaps = 32/318 (10%)
Query: 297 VKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGT----SEFSDRSPEEILCKTGFK 347
V + + + K +K ++ T E+ + +++ ++G
Sbjct: 125 VYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSG-- 182
Query: 348 WSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK---NVTGPAGDQAACGSCWAFS 404
+ R + + +K +P +WDWR N P +QA+CGSC++F+
Sbjct: 183 ----GHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFA 238
Query: 405 IAGMLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAGLESEK 460
GMLE + I T S ++V C++ GC G G I +Y GL E
Sbjct: 239 SMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEG--GFPYLIAGKYAQDFGLVEEA 296
Query: 461 DYPYRNGNGE-KFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNSHL-I 517
+PY + K K + + Y +E MK L +GP++V +
Sbjct: 297 CFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDF 356
Query: 518 HFYNG---TPIRKNDETCSPYDLGHAVLLVGYG--KQDDIPYWLARNSWGPIGPDEGFFK 572
Y D HAVLLVGYG + YW+ +NSWG + G+F+
Sbjct: 357 LHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFR 416
Query: 573 IERGNNACGIEQIAGYAT 590
I RG + C IE IA AT
Sbjct: 417 IRRGTDECAIESIAVAAT 434
Score = 198 bits (504), Expect = 2e-55
Identities = 75/234 (32%), Positives = 105/234 (44%), Gaps = 16/234 (6%)
Query: 6 EKDGPVPDAWDWRKK---NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKL--VEFSK 60
+K +P +WDWR N P +QA CGSC++F+ GMLE + I T S
Sbjct: 202 QKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 261
Query: 61 SQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGE-KFKCAYDKSKVKLF 118
++V C++ GC+G F Q GL E +PY + K K + +
Sbjct: 262 QEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEY 321
Query: 119 TGKDFLHFNGSET-MKKILYKYGPLSVLLN--SDLIHDYNG---TPIRKNDETCSPYDLG 172
+ +E MK L +GP++V D +H Y D
Sbjct: 322 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH-YKKGIYHHTGLRDPFNPFELTN 380
Query: 173 HAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 224
HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE IA AT
Sbjct: 381 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434
Score = 91.4 bits (227), Expect = 2e-19
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 961 NDETCSPYDLGHAVLLVGYG--KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 1018
D HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE I
Sbjct: 370 RDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESI 429
Query: 1019 AGYAT 1023
A AT
Sbjct: 430 AVAAT 434
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 200 bits (511), Expect = 1e-58
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 18/241 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
P++WDW KK V Q CGS WAFS G +E +AI TG LV S+ +L++C +
Sbjct: 2 APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61
Query: 802 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKL----FTGKDFLH 856
GC + S E+ + G+ SE DYPYK +G KC ++ + K+ + + +
Sbjct: 62 EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDG---KCKANEIQDKVTIDNYGVQILSN 118
Query: 857 FN---GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS-PYDLGHAVLLVGYG 912
+ +E+ + P+SV +++ H Y+G + CS PY + H VL+VGYG
Sbjct: 119 ESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIY--DGGNCSSPYGINHFVLIVGYG 176
Query: 913 KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATIDVVKNDETCSPY 968
+D + YW+ +NSWG +G+ +I+R CG+ A Y I+ + +
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIEKSETLKFGRVK 236
Query: 969 D 969
Sbjct: 237 A 237
Score = 199 bits (508), Expect = 4e-58
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 18/229 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
P++WDW KK V Q CGS WAFS G +E +AI TG LV S+ +L++C +
Sbjct: 2 APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61
Query: 71 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKL----FTGKDFLH 125
GC + S E+ + G+ SE DYPYK +G KC ++ + K+ + + +
Sbjct: 62 EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDG---KCKANEIQDKVTIDNYGVQILSN 118
Query: 126 FN---GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS-PYDLGHAVLLVGYG 181
+ +E+ + P+SV +++ H Y+G + CS PY + H VL+VGYG
Sbjct: 119 ESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIY--DGGNCSSPYGINHFVLIVGYG 176
Query: 182 KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
+D + YW+ +NSWG +G+ +I+R CG+ A Y I+
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225
Score = 198 bits (507), Expect = 6e-58
Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
P++WDW KK V Q CGS WAFS G +E +AI TG LV S+ +L++C +
Sbjct: 2 APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61
Query: 436 SGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKL----FTGKDF 489
GC G Q E+ + G+ SE DYPY+ +G KC ++ + K+ + +
Sbjct: 62 EGCYN--GWHYQSFEWVVKHGGIASEADYPYKARDG---KCKANEIQDKVTIDNYGVQIL 116
Query: 490 LYFN---GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCS-PYDLGHAVLLVG 545
+ +E+ + P+SV +++ HFY+G + CS PY + H VL+VG
Sbjct: 117 SNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIY--DGGNCSSPYGINHFVLIVG 174
Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
YG +D + YW+A+NSWG +G+ +I+R CG+ A Y I+
Sbjct: 175 YGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225
Score = 81.5 bits (202), Expect = 3e-17
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 961 NDETCS-PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGI 1015
+ CS PY + H VL+VGYG +D + YW+ +NSWG +G+ +I+R CG+
Sbjct: 156 DGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGM 215
Query: 1016 EQIAGYATID 1025
A Y I+
Sbjct: 216 NYFASYPIIE 225
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 198 bits (507), Expect = 2e-58
Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 24/226 (10%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 72 GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGS 129
GC G + + +Y G++SE YPY C Y+ + G +
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYREIPEGNE 118
Query: 130 ETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGY 180
+ +K+ + + GP+SV +++ Y DE+C+ +L HAVL VGY
Sbjct: 119 KALKRAVARVGPVSVAIDAS--LTSFQFYSKGVY-------YDESCNSDNLNHAVLAVGY 169
Query: 181 GKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
G Q +W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 170 GIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 198 bits (506), Expect = 3e-58
Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 24/226 (10%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 803 GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGS 860
GC G + + +Y G++SE YPY C Y+ + G +
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYREIPEGNE 118
Query: 861 ETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGY 911
+ +K+ + + GP+SV +++ Y DE+C+ +L HAVL VGY
Sbjct: 119 KALKRAVARVGPVSVAIDAS--LTSFQFYSKGVY-------YDESCNSDNLNHAVLAVGY 169
Query: 912 GKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
G Q +W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 170 GIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 196 bits (501), Expect = 1e-57
Identities = 83/229 (36%), Positives = 116/229 (50%), Gaps = 29/229 (12%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
PD+ D+RKK P +Q CGSCWAFS G LEGQ KTGKL+ S LV+C +
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 437 GCGGCDGL-EQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN- 493
GCGG G +Y G++SE YPY C Y+ + K Y
Sbjct: 62 GCGG--GYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGK---AAKCRGYREI 113
Query: 494 --GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLL 543
G+E +K+ + + GP+SV +++ L F Y DE+C+ +L HAVL
Sbjct: 114 PEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY-------YDESCNSDNLNHAVLA 166
Query: 544 VGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
VGYG Q +W+ +NSWG ++G+ + R NNACGI +A + +
Sbjct: 167 VGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
Score = 83.7 bits (208), Expect = 3e-18
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 961 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 151 YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA 210
Query: 1020 GYATI 1024
+ +
Sbjct: 211 SFPKM 215
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 196 bits (501), Expect = 1e-57
Identities = 81/227 (35%), Positives = 111/227 (48%), Gaps = 28/227 (12%)
Query: 377 PDAWDWRKK--NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 434
P + DWRKK V+ P +Q +CGSCW FS G LE AI TGK++ ++ QLV+CA+
Sbjct: 2 PPSMDWRKKGNFVS-PVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQN 60
Query: 435 CSGCGGCDG--LEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLY 491
GC G Q EY G+ E YPY+ + C + K
Sbjct: 61 F-NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD---HCKFQPDKA---IAFVKDV 113
Query: 492 FN---GSET-MKKILYKYGPLSVGLN-SHLIHFYNGTPIRK---NDETC--SPYDLGHAV 541
N E M + + Y P+S ++ Y RK + +C +P + HAV
Sbjct: 114 ANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMY-----RKGIYSSTSCHKTPDKVNHAV 168
Query: 542 LLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGY 588
L VGYG+++ IPYW+ +NSWGP G+F IERG N CG+ A Y
Sbjct: 169 LAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
Score = 196 bits (500), Expect = 2e-57
Identities = 82/227 (36%), Positives = 111/227 (48%), Gaps = 29/227 (12%)
Query: 12 PDAWDWRKK--NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 69
P + DWRKK V+ P +Q CGSCW FS G LE AI TGK++ ++ QLV+CA+
Sbjct: 2 PPSMDWRKKGNFVS-PVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQN 60
Query: 70 C--SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLH 125
GC G + EY G+ E YPYK + C + K F +
Sbjct: 61 FNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD---HCKFQPDKAIAFVKDVANIT 117
Query: 126 FNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETC--SPYDLGHAV 175
N E M + + Y P+S +D Y + +C +P + HAV
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVT--NDFLMYRKGIY-------SSTSCHKTPDKVNHAV 168
Query: 176 LLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 222
L VGYG+++ IPYW+V+NSWGP G+F IERG N CG+ A Y
Sbjct: 169 LAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
Score = 195 bits (498), Expect = 4e-57
Identities = 82/227 (36%), Positives = 112/227 (49%), Gaps = 29/227 (12%)
Query: 743 PDAWDWRKK--NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 800
P + DWRKK V+ P +Q +CGSCW FS G LE AI TGK++ ++ QLV+CA+
Sbjct: 2 PPSMDWRKKGNFVS-PVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQN 60
Query: 801 C--SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLH 856
GC G + EY G+ E YPYK + C + K F +
Sbjct: 61 FNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD---HCKFQPDKAIAFVKDVANIT 117
Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETC--SPYDLGHAV 906
N E M + + Y P+S +D Y + +C +P + HAV
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVT--NDFLMYRKGIY-------SSTSCHKTPDKVNHAV 168
Query: 907 LLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 953
L VGYG+++ IPYW+V+NSWGP G+F IERG N CG+ A Y
Sbjct: 169 LAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
Score = 84.8 bits (211), Expect = 1e-18
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 961 NDETC--SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 1018
+ +C +P + HAVL VGYG+++ IPYW+V+NSWGP G+F IERG N CG+
Sbjct: 153 SSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAAC 212
Query: 1019 AGY 1021
A Y
Sbjct: 213 ASY 215
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 198 bits (505), Expect = 1e-56
Identities = 68/294 (23%), Positives = 102/294 (34%), Gaps = 48/294 (16%)
Query: 696 SEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWD----WRKK 751
+ + E G ++ E E P+P ++D W
Sbjct: 32 GVMQNITLREAKRLNGVIKKNNN------ASILPKRRFTEEEARAPLPSSFDSAEAWPNC 85
Query: 752 NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECAKQCS-GCDGCFF 809
DQ+ACGSCWA + A + ++ G + V S L+ C C GC+G
Sbjct: 86 PTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDP 145
Query: 810 EPSIEYTHQAGLESEKDYPYKNANGE----------------------KFKCAYDKSKVK 847
+ + Y GL S+ PY + + C V
Sbjct: 146 DRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVV 205
Query: 848 LFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN---DETCSPYDL 902
+ G + + L+ GP V + D I Y + Y
Sbjct: 206 NYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIA-Y------NSGVYHHVSGQYLG 258
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAGYAT 955
GHAV LVG+G + +PYW + NSW G +G+F I RG++ CGIE
Sbjct: 259 GHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIRRGSSECGIEDGGSAGI 311
Score = 194 bits (494), Expect = 2e-55
Identities = 69/296 (23%), Positives = 103/296 (34%), Gaps = 51/296 (17%)
Query: 330 SEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWD----WRKK 385
+ + E G ++ E E P+P ++D W
Sbjct: 32 GVMQNITLREAKRLNGVIKKNNN------ASILPKRRFTEEEARAPLPSSFDSAEAWPNC 85
Query: 386 NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECAKQCSGCG-GCDG 443
DQ+ACGSCWA + A + ++ G + V S L+ C CS CG GC+G
Sbjct: 86 PTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLAC---CSDCGDGCNG 142
Query: 444 --LEQPIEYTHQAGLESEKDYPYRNGNGE----------------------KFKCAYDKS 479
++ Y GL S+ PY + + C
Sbjct: 143 GDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTI 202
Query: 480 KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHL-IHFYNGTPIRKN---DETCSPY 535
V + G + + L+ GP V + + Y + Y
Sbjct: 203 PVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAY------NSGVYHHVSGQY 256
Query: 536 DLGHAVLLVGYGKQDDIPYWLARNSWGPI-GPDEGFFKIERGNNACGIEQIAGYAT 590
GHAV LVG+G + +PYW NSW G +G+F I RG++ CGIE
Sbjct: 257 LGGHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIRRGSSECGIEDGGSAGI 311
Score = 193 bits (492), Expect = 5e-55
Identities = 65/255 (25%), Positives = 95/255 (37%), Gaps = 42/255 (16%)
Query: 4 EVEKDGPVPDAWD----WRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLVEF 58
E E P+P ++D W DQ+ CGSCWA + A + ++ G + V
Sbjct: 65 EEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHI 124
Query: 59 SKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE------------- 104
S L+ C C GC+G + + Y GL S+ PY +
Sbjct: 125 SAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCS 184
Query: 105 ---------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHD 153
+ C V + G + + L+ GP V + D I
Sbjct: 185 QFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIA- 243
Query: 154 YNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFKIER 209
Y + Y GHAV LVG+G + +PYW + NSW G +G+F I R
Sbjct: 244 Y------NSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIRR 296
Query: 210 GNNACGIEQIAGYAT 224
G++ CGIE
Sbjct: 297 GSSECGIEDGGSAGI 311
Score = 94.0 bits (234), Expect = 7e-21
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAG 1020
Y GHAV LVG+G + +PYW + NSW G +G+F I RG++ CGIE
Sbjct: 250 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIRRGSSECGIEDGGS 308
Query: 1021 YAT 1023
Sbjct: 309 AGI 311
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 193 bits (492), Expect = 3e-56
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 21/227 (9%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G GC+G + +Y G++S+ YPY+ + KC YD Y
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYR---AATCSKYT 115
Query: 493 N---GSET-MKKILYKYGPLSVGLN-SHLI-HFY-NGTPIRKNDETCSPYDLGHAVLLVG 545
G E +K+ + GP+SVG++ H Y +G + +C+ ++ H VL+VG
Sbjct: 116 ELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVG 171
Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
YG + YWL +NSWG +EG+ ++ R N CGI Y I
Sbjct: 172 YGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 188 bits (480), Expect = 1e-54
Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 16/224 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+PD+ DWR+K Q CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 71 SGCDGC---FFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLH 125
G GC F + +Y G++S+ YPYK + KC YD + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTELP 118
Query: 126 FNGSETMKKILYKYGPLSVLLN---SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGK 182
+ + +K+ + GP+SV ++ +G + +C+ ++ H VL+VGYG
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGD 174
Query: 183 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
+ YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 175 LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 187 bits (478), Expect = 2e-54
Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 16/224 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+PD+ DWR+K Q +CG+CWAFS G LE Q +KTGKLV S LV+C+ +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 802 SGCDGC---FFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLH 856
G GC F + +Y G++S+ YPYK + KC YD + L
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTELP 118
Query: 857 FNGSETMKKILYKYGPLSVLLN---SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGK 913
+ + +K+ + GP+SV ++ +G + +C+ ++ H VL+VGYG
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGD 174
Query: 914 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
+ YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 175 LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
Score = 78.3 bits (194), Expect = 2e-16
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 959 VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQ 1017
V + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 153 VYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
Query: 1018 IAGYATI 1024
Y I
Sbjct: 212 FPSYPEI 218
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 191 bits (489), Expect = 6e-56
Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 16/224 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWRKK P Q CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 128
GC G + ++EY + G+ YPYK G C + + + N
Sbjct: 61 HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
+ + K P+SV++ S Y G + C + HAV VGYGK
Sbjct: 118 EGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIF---EGPCGT-KVDHAVTAVGYGKSGGK 172
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
Y L++NSWG ++G+ +I+R CG+ + + Y T +
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216
Score = 191 bits (489), Expect = 7e-56
Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 16/224 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWRKK P Q +CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 859
GC G + ++EY + G+ YPYK G C + + + N
Sbjct: 61 HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
+ + K P+SV++ S Y G + C + HAV VGYGK
Sbjct: 118 EGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIF---EGPCGT-KVDHAVTAVGYGKSGGK 172
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
Y L++NSWG ++G+ +I+R CG+ + + Y T +
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216
Score = 188 bits (481), Expect = 7e-55
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 29/231 (12%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWRKK P Q +CGSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 436 SGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN- 493
GC G G +EY + G+ YPY+ ++ C + +
Sbjct: 61 HGCKG--GYPPYALEYVAKNGIHLRSKYPYK---AKQGTCRAKQVGGPIVKTSGVGRVQP 115
Query: 494 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 545
+E + + K P+SV + S F + G C + HAV VG
Sbjct: 116 NNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG--------PCGT-KVDHAVTAVG 165
Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
YGK Y L +NSWG ++G+ +I+R CG+ + + Y T +
Sbjct: 166 YGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216
Score = 77.1 bits (191), Expect = 5e-16
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
+ C + HAV VGYGK Y L++NSWG ++G+ +I+R CG+ +
Sbjct: 150 EGPCGT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYK 208
Query: 1018 IAGYATID 1025
+ Y T +
Sbjct: 209 SSYYPTKN 216
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 189 bits (482), Expect = 6e-55
Identities = 78/231 (33%), Positives = 110/231 (47%), Gaps = 28/231 (12%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ- 60
Query: 437 GCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
G GC+G ++ +Y GL+SE+ YPY C Y+ F+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDTGFVDIP 116
Query: 494 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 545
E + K + GP+SV +++ F Y + CS D+ H VL+VG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-------FEPDCSSEDMDHGVLVVG 169
Query: 546 YGKQ----DDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
YG + D+ YWL +NSWG G+ K+ + N CGI A Y T+
Sbjct: 170 YGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 187 bits (477), Expect = 3e-54
Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 31/232 (13%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-- 69
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 70 CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
GC+G + + +Y GL+SE+ YPY+ C Y+ F+
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDTGFVDIPK 117
Query: 129 SET-MKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLV 178
E + K + GP+SV +++ H+ Y + CS D+ H VL+V
Sbjct: 118 QEKALMKAVATVGPISVAIDAG--HESFLFYKEGIY-------FEPDCSSEDMDHGVLVV 168
Query: 179 GYGKQ----DNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
GYG + DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 169 GYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 186 bits (476), Expect = 4e-54
Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 31/232 (13%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-- 800
P + DWR+K P +Q CGSCWAFS G LEGQ KTG+L+ S+ LV+C+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 801 CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
GC+G + + +Y GL+SE+ YPY+ C Y+ F+
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDTGFVDIPK 117
Query: 860 SET-MKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLV 909
E + K + GP+SV +++ H+ Y + CS D+ H VL+V
Sbjct: 118 QEKALMKAVATVGPISVAIDAG--HESFLFYKEGIY-------FEPDCSSEDMDHGVLVV 168
Query: 910 GYGKQ----DNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
GYG + DN YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 169 GYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
Score = 79.5 bits (197), Expect = 1e-16
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 959 VKNDETCSPYDLGHAVLLVGYGKQ----DDIPYWLVRNSWGPIGPDEGFFKIERG-NNAC 1013
+ + CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N C
Sbjct: 150 IYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 1014 GIEQIAGYATI 1024
GI A Y T+
Sbjct: 210 GIASAASYPTV 220
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 189 bits (482), Expect = 1e-54
Identities = 71/238 (29%), Positives = 102/238 (42%), Gaps = 35/238 (14%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
A+DWR P DQA CGSCWAFS G +E QYAI+ L FS+ +LV+C+ +
Sbjct: 20 DRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKN 79
Query: 436 SGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
+GC G G + GL S+ DYPY + E C + + Y +
Sbjct: 80 NGCYG--GYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNER---YTIKSYVS 132
Query: 494 GSET-MKKILYKYGPLSVGLN-SHLIHFYNG---TPIRKNDETCSPYDLGHAVLLVGYG- 547
+ K+ L GP+S+ + S FY G C HAV+LVGYG
Sbjct: 133 IPDDKFKEALRYLGPISISIAASDDFAFYRGGFYDG------ECGA-APNHAVILVGYGM 185
Query: 548 ---------KQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
+ + Y++ +NSWG + G+ +E N C I A ++
Sbjct: 186 KDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE 243
Score = 188 bits (479), Expect = 3e-54
Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 30/235 (12%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
A+DWR P DQA CGSCWAFS G +E QYAI+ L FS+ +LV+C+ +
Sbjct: 20 DRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKN 79
Query: 71 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
+GC G + + + GL S+ DYPY + E C + + T K ++
Sbjct: 80 NGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNERY-TIKSYVSIP-D 135
Query: 130 ETMKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYG---- 181
+ K+ L GP+S+ + SD Y G C HAV+LVGYG
Sbjct: 136 DKFKEALRYLGPISISIAASDDFAFYRGGFYDG------ECGA-APNHAVILVGYGMKDI 188
Query: 182 ------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
+ + Y++++NSWG + G+ +E N C I A ++
Sbjct: 189 YNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE 243
Score = 187 bits (478), Expect = 4e-54
Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 30/235 (12%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
A+DWR P DQA CGSCWAFS G +E QYAI+ L FS+ +LV+C+ +
Sbjct: 20 DRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKN 79
Query: 802 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
+GC G + + + GL S+ DYPY + E C + + T K ++
Sbjct: 80 NGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNERY-TIKSYVSIP-D 135
Query: 861 ETMKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYG---- 912
+ K+ L GP+S+ + SD Y G C HAV+LVGYG
Sbjct: 136 DKFKEALRYLGPISISIAASDDFAFYRGGFYDG------ECGA-APNHAVILVGYGMKDI 188
Query: 913 ------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
+ + Y++++NSWG + G+ +E N C I A ++
Sbjct: 189 YNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE 243
Score = 73.8 bits (182), Expect = 1e-14
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 962 DETCSPYDLGHAVLLVGYG----------KQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 1011
D C HAV+LVGYG + + Y++++NSWG + G+ +E N
Sbjct: 167 DGECGA-APNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225
Query: 1012 A----CGIEQIAGYATID 1025
C I A ++
Sbjct: 226 GYKKTCSIGTEAYVPLLE 243
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 188 bits (480), Expect = 2e-54
Identities = 73/242 (30%), Positives = 107/242 (44%), Gaps = 35/242 (14%)
Query: 372 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 431
++ A+DWR + P DQ CGSCWAFS G +E QYAI+ KL+ S+ +LV+C
Sbjct: 14 EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73
Query: 432 AKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF 489
+ + GC G GL E + G+ + DYPY + C D+ K
Sbjct: 74 SFKNYGCNG--GLINNAFEDMIELGGICPDGDYPYVSDAPN--LCNIDRCTEK---YGIK 126
Query: 490 LYFNGSET-MKKILYKYGPLSVGLN-SHLIHFYNG---TPIRKNDETCSPYDLGHAVLLV 544
Y + + +K+ L GP+S+ + S FY C L HAV+LV
Sbjct: 127 NYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDG------ECGD-QLNHAVMLV 179
Query: 545 GYG----------KQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
G+G K + Y++ +NSWG + GF IE + CG+ A
Sbjct: 180 GFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
Query: 591 ID 592
I+
Sbjct: 240 IE 241
Score = 186 bits (475), Expect = 1e-53
Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 32/240 (13%)
Query: 7 KDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 66
++ A+DWR + P DQ +CGSCWAFS G +E QYAI+ KL+ S+ +LV+C
Sbjct: 14 EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73
Query: 67 AKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH 125
+ + GC+G + E + G+ + DYPY + C D+ K +
Sbjct: 74 SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPN--LCNIDRCTEK---YGIKNY 128
Query: 126 FNGSET-MKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGY 180
+ + +K+ L GP+S+ + SD Y C L HAV+LVG+
Sbjct: 129 LSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDG------ECGD-QLNHAVMLVGF 181
Query: 181 G----------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
G K + Y++++NSWG + GF IE + CG+ A I+
Sbjct: 182 GMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241
Score = 186 bits (474), Expect = 1e-53
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 32/240 (13%)
Query: 738 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 797
++ A+DWR + P DQ CGSCWAFS G +E QYAI+ KL+ S+ +LV+C
Sbjct: 14 EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73
Query: 798 AKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH 856
+ + GC+G + E + G+ + DYPY + C D+ K +
Sbjct: 74 SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPN--LCNIDRCTEK---YGIKNY 128
Query: 857 FNGSET-MKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGY 911
+ + +K+ L GP+S+ + SD Y C L HAV+LVG+
Sbjct: 129 LSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDG------ECGD-QLNHAVMLVGF 181
Query: 912 G----------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
G K + Y++++NSWG + GF IE + CG+ A I+
Sbjct: 182 GMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241
Score = 71.9 bits (177), Expect = 5e-14
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 962 DETCSPYDLGHAVLLVGYG----------KQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 1011
D C L HAV+LVG+G K + Y++++NSWG + GF IE +
Sbjct: 165 DGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDES 223
Query: 1012 A----CGIEQIAGYATID 1025
CG+ A I+
Sbjct: 224 GLMRKCGLGTDAFIPLIE 241
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 187 bits (477), Expect = 2e-54
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 15/221 (6%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P DWR K +Q CGSCWAFS +E I+TG+L+ S+ +LV+C
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 71 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
GC+G + + +Y G++++++YPY G C + +V G + N
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQG---SCKPYRLRVVSINGFQRVTRNNE 117
Query: 130 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
++ + P+SV + + Y+ C H V++VGYG Q
Sbjct: 118 SALQSAVAS-QPVSVTVEAAGAPFQHYSSGIF---TGPCGT-AQNHGVVIVGYGTQSGKN 172
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
YW+VRNSWG ++G+ +ER + CGI Q+ Y T
Sbjct: 173 YWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
Score = 187 bits (477), Expect = 3e-54
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 15/221 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P DWR K +Q CGSCWAFS +E I+TG+L+ S+ +LV+C
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
GC+G + + +Y G++++++YPY G C + +V G + N
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQG---SCKPYRLRVVSINGFQRVTRNNE 117
Query: 861 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
++ + P+SV + + Y+ C H V++VGYG Q
Sbjct: 118 SALQSAVAS-QPVSVTVEAAGAPFQHYSSGIF---TGPCGT-AQNHGVVIVGYGTQSGKN 172
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
YW+VRNSWG ++G+ +ER + CGI Q+ Y T
Sbjct: 173 YWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
Score = 184 bits (469), Expect = 3e-53
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 28/228 (12%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P DWR K +Q CGSCWAFS +E I+TG+L+ S+ +LV+C
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 436 SGCGGCDGL-EQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
GC G G +Y G++++++YPY + C + +V G + N
Sbjct: 61 HGCNG--GWMNNAFQYIITNGGIDTQQNYPYS---AVQGSCKPYRLRVVSINGFQRVTRN 115
Query: 494 GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 546
++ + P+SV + + F + G C H V++VGY
Sbjct: 116 NESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTG--------PCGT-AQNHGVVIVGY 165
Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
G Q YW+ RNSWG ++G+ +ER + CGI Q+ Y T
Sbjct: 166 GTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
Score = 73.7 bits (182), Expect = 8e-15
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
C H V++VGYG Q YW+VRNSWG ++G+ +ER + CGI Q
Sbjct: 149 TGPCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQ 207
Query: 1018 IAGYAT 1023
+ Y T
Sbjct: 208 LPSYPT 213
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 186 bits (474), Expect = 6e-54
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P + DWR+K P +Q CGSCW FS +EG I TG+L+ S+ +L++C ++
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 128
GC G F +++Y +G+ + YPY+ +C ++K + N
Sbjct: 61 YGCRGGFPLYALQYVANSGIHLRQYYPYEGVQR---QCRASQAKGPKVKTDGVGRVPRNN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
+ + + + P+S+++ + +Y G C + HAV VGYG
Sbjct: 118 EQALIQRIAI-QPVSIVVEAKGRAFQNYRGGIF---AGPCGT-SIDHAVAAVGYGN---- 168
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
Y L++NSWG + G+ +I+RG+ CG+ + + T +
Sbjct: 169 DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTKN 212
Score = 186 bits (474), Expect = 7e-54
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P + DWR+K P +Q CGSCW FS +EG I TG+L+ S+ +L++C ++
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 859
GC G F +++Y +G+ + YPY+ +C ++K + N
Sbjct: 61 YGCRGGFPLYALQYVANSGIHLRQYYPYEGVQR---QCRASQAKGPKVKTDGVGRVPRNN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
+ + + + P+S+++ + +Y G C + HAV VGYG
Sbjct: 118 EQALIQRIAI-QPVSIVVEAKGRAFQNYRGGIF---AGPCGT-SIDHAVAAVGYGN---- 168
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
Y L++NSWG + G+ +I+RG+ CG+ + + T +
Sbjct: 169 DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTKN 212
Score = 183 bits (468), Expect = 4e-53
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 31/230 (13%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P + DWR+K P +Q CGSCW FS +EG I TG+L+ S+ +L++C ++
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 436 SGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN- 493
GC G G ++Y +G+ + YPY G + +C ++K
Sbjct: 61 YGCRG--GFPLYALQYVANSGIHLRQYYPYE---GVQRQCRASQAKGPKVKTDGVGRVPR 115
Query: 494 GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 546
+E P+S+ + + F + G C + HAV VGY
Sbjct: 116 NNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAG--------PCGT-SIDHAVAAVGY 166
Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
G Y L +NSWG + G+ +I+RG+ CG+ + + T +
Sbjct: 167 GN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTKN 212
Score = 70.9 bits (175), Expect = 5e-14
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
C + HAV VGYG Y L++NSWG + G+ +I+RG+ CG+
Sbjct: 150 AGPCGT-SIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLS 204
Query: 1018 IAGYATID 1025
+ + T +
Sbjct: 205 DSVFPTKN 212
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 186 bits (475), Expect = 2e-53
Identities = 57/256 (22%), Positives = 91/256 (35%), Gaps = 44/256 (17%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
D DQ +C + W F+ LE +K + + S + C K
Sbjct: 10 CNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGE 69
Query: 71 --SGCDGCF----FEPSIEYTHQAGLESEKDYPYK---------------NANGEKFKCA 109
CD F IE L +E +YPY + K
Sbjct: 70 HKDRCDEGSSPMEFLQIIEDYG--FLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKIL 127
Query: 110 YDKSKVKLFTGKDFLHFNGS----------ETMKKILYKYGPLSVLLN--SDLIHDYNGT 157
++K++ GK + + + +K + G + + + + ++++G
Sbjct: 128 HNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG- 186
Query: 158 PIRKNDETCSPYDLGHAVLLVGYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GN 211
+K C HAV +VGYG N YW+VRNSWGP DEG+FK++ G
Sbjct: 187 --KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGP 244
Query: 212 NACGIEQIAGYATIDV 227
C I +V
Sbjct: 245 THCHFNFIHSVVIFNV 260
Score = 185 bits (472), Expect = 5e-53
Identities = 57/256 (22%), Positives = 90/256 (35%), Gaps = 44/256 (17%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
D DQ C + W F+ LE +K + + S + C K
Sbjct: 10 CNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGE 69
Query: 802 --SGCDGCF----FEPSIEYTHQAGLESEKDYPYK---------------NANGEKFKCA 840
CD F IE L +E +YPY + K
Sbjct: 70 HKDRCDEGSSPMEFLQIIEDYG--FLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKIL 127
Query: 841 YDKSKVKLFTGKDFLHFNGS----------ETMKKILYKYGPLSVLLN--SDLIHDYNGT 888
++K++ GK + + + +K + G + + + + ++++G
Sbjct: 128 HNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG- 186
Query: 889 PIRKNDETCSPYDLGHAVLLVGYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GN 942
+K C HAV +VGYG N YW+VRNSWGP DEG+FK++ G
Sbjct: 187 --KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGP 244
Query: 943 NACGIEQIAGYATIDV 958
C I +V
Sbjct: 245 THCHFNFIHSVVIFNV 260
Score = 184 bits (468), Expect = 2e-52
Identities = 54/255 (21%), Positives = 90/255 (35%), Gaps = 41/255 (16%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
D DQ C + W F+ LE +K + + S + C K
Sbjct: 10 CNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKG- 68
Query: 436 SGCGGCDGLEQPIEYT----HQAGLESEKDYPYR---------------NGNGEKFKCAY 476
CD P+E+ L +E +YPY + K +
Sbjct: 69 EHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILH 128
Query: 477 DKSKVKLFTGKDFLYFNGS----------ETMKKILYKYGPLSVGLN-SHLI-HFYNGTP 524
+K++ GK + + + +K + G + + +++ + ++G
Sbjct: 129 NKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-- 186
Query: 525 IRKNDETCSPYDLGHAVLLVGYGKQDDI-----PYWLARNSWGPIGPDEGFFKIER-GNN 578
+K C HAV +VGYG + YW+ RNSWGP DEG+FK++ G
Sbjct: 187 -KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPT 245
Query: 579 ACGIEQIAGYATIDV 593
C I +V
Sbjct: 246 HCHFNFIHSVVIFNV 260
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 185 bits (471), Expect = 2e-53
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 16/222 (7%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+PD+ DWR+ P +Q CGSCWAFS +EG I TG L+ S+ QLV+C
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 71 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNG 128
GC G + P+ ++ G+ SE+ YPY+ +G C + + + + +
Sbjct: 63 HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG---ICNSTVNAPVVSIDSYENVPSHN 119
Query: 129 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
++++K + P+SV +++ Y +C+ HA+ +VGYG +++
Sbjct: 120 EQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIF---TGSCNI-SANHALTVVGYGTENDK 174
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
+W+V+NSWG + G+ + ER CGI + A Y
Sbjct: 175 DFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
Score = 184 bits (470), Expect = 3e-53
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 16/222 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+PD+ DWR+ P +Q CGSCWAFS +EG I TG L+ S+ QLV+C
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNG 859
GC G + P+ ++ G+ SE+ YPY+ +G C + + + + +
Sbjct: 63 HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG---ICNSTVNAPVVSIDSYENVPSHN 119
Query: 860 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
++++K + P+SV +++ Y +C+ HA+ +VGYG +++
Sbjct: 120 EQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIF---TGSCNI-SANHALTVVGYGTENDK 174
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
+W+V+NSWG + G+ + ER CGI + A Y
Sbjct: 175 DFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
Score = 182 bits (464), Expect = 2e-52
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 33/231 (14%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD+ DWR+ P +Q CGSCWAFS +EG I TG L+ S+ QLV+C
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 436 SGCGGCDGL-EQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
GC G G ++ G+ SE+ YPYR +G C + Y N
Sbjct: 63 HGCRG--GWMNPAFQFIVNNGGINSEETYPYRGQDG---ICNSTVNAPV---VSIDSYEN 114
Query: 494 ---GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLL 543
+E + P+SV +++ F + G +C+ HA+ +
Sbjct: 115 VPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG--------SCNI-SANHALTV 165
Query: 544 VGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
VGYG ++D +W+ +NSWG + G+ + ER CGI + A Y
Sbjct: 166 VGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
Score = 75.3 bits (186), Expect = 2e-15
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
+C+ HA+ +VGYG ++D +W+V+NSWG + G+ + ER CGI +
Sbjct: 152 TGSCNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITR 210
Query: 1018 IAGYAT 1023
A Y
Sbjct: 211 FASYPV 216
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 184 bits (469), Expect = 3e-53
Identities = 69/221 (31%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P + DWR K P +Q CGSCWAFS +EG I TG L+E S+ +LV+C K
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 72 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGS 129
GC G + S++Y G+ + K YPY+ KC + + N
Sbjct: 62 GCKGGYQTTSLQYVANNGVHTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCE 118
Query: 130 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
+ L PLSVL+ + Y D C L HAV VGYG D
Sbjct: 119 TSFLGALAN-QPLSVLVEAGGKPFQLYKSGVF---DGPCGT-KLDHAVTAVGYGTSDGKN 173
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
Y +++NSWGP ++G+ +++R + CG+ + + Y
Sbjct: 174 YIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
Score = 184 bits (469), Expect = 3e-53
Identities = 70/221 (31%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P + DWR K P +Q ACGSCWAFS +EG I TG L+E S+ +LV+C K
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGS 860
GC G + S++Y G+ + K YPY+ KC + + N
Sbjct: 62 GCKGGYQTTSLQYVANNGVHTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCE 118
Query: 861 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
+ L PLSVL+ + Y D C L HAV VGYG D
Sbjct: 119 TSFLGALAN-QPLSVLVEAGGKPFQLYKSGVF---DGPCGT-KLDHAVTAVGYGTSDGKN 173
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
Y +++NSWGP ++G+ +++R + CG+ + + Y
Sbjct: 174 YIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
Score = 182 bits (464), Expect = 1e-52
Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 29/228 (12%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P + DWR K P +Q ACGSCWAFS +EG I TG L+E S+ +LV+C K
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 437 GCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-G 494
GC G G ++Y G+ + K YPY+ +++KC +
Sbjct: 62 GCKG--GYQTTSLQYVANNGVHTSKVYPYQ---AKQYKCRATDKPGPKVKITGYKRVPSN 116
Query: 495 SET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 546
ET L PLSV + + F ++G C L HAV VGY
Sbjct: 117 CETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDG--------PCGT-KLDHAVTAVGY 166
Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
G D Y + +NSWGP ++G+ +++R + CG+ + + Y
Sbjct: 167 GTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
Score = 73.7 bits (182), Expect = 7e-15
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
D C L HAV VGYG D Y +++NSWGP ++G+ +++R + CG+ +
Sbjct: 150 DGPCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYK 208
Query: 1018 IAGYAT 1023
+ Y
Sbjct: 209 SSYYPF 214
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 183 bits (468), Expect = 4e-53
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 20/224 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWR+K P +Q CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 71 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 128
GC+G + +++ Q G+ YPY+ C + +
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
+ + P+SV+L + Y G C + HAV VGYG
Sbjct: 118 EGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIF---VGPCGN-KVDHAVAAVGYGP---- 168
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
Y L++NSWG + G+ +I+RG CG+ + Y +
Sbjct: 169 NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
Score = 183 bits (468), Expect = 4e-53
Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 20/224 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWR+K P +Q +CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 859
GC+G + +++ Q G+ YPY+ C + +
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
+ + P+SV+L + Y G C + HAV VGYG
Sbjct: 118 EGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIF---VGPCGN-KVDHAVAAVGYGP---- 168
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
Y L++NSWG + G+ +I+RG CG+ + Y +
Sbjct: 169 NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
Score = 181 bits (462), Expect = 3e-52
Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWR+K P +Q +CGSCWAFS +EG I+TG L ++S+ +L++C ++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 436 SGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN- 493
GC G G ++ Q G+ YPY G + C +
Sbjct: 61 YGCNG--GYPWSALQLVAQYGIHYRNTYPYE---GVQRYCRSREKGPYAAKTDGVRQVQP 115
Query: 494 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 545
+E + + P+SV L + F + G C + HAV VG
Sbjct: 116 YNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVG--------PCGN-KVDHAVAAVG 165
Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
YG Y L +NSWG + G+ +I+RG CG+ + Y +
Sbjct: 166 YGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
Score = 69.4 bits (171), Expect = 2e-13
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
C + HAV VGYG Y L++NSWG + G+ +I+RG CG+
Sbjct: 150 VGPCGN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYT 204
Query: 1018 IAGYATID 1025
+ Y +
Sbjct: 205 SSFYPVKN 212
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 182 bits (464), Expect = 1e-52
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P++ DWR+K P +Q CGSCWAFS +EG I TG+L+ S+ +L++C ++
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 72 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGS 129
GCDG + S++Y G+ +E++YPY+ G +C K + + N
Sbjct: 62 GCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDE 118
Query: 130 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
++ + + P+SV+ +S Y G + C + HAV VGYGK
Sbjct: 119 ISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIY---EGPCGT-NTDHAVTAVGYGK----T 169
Query: 188 YWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 222
Y L++NSWGP ++G+ +I+R CG+ + +
Sbjct: 170 YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208
Score = 182 bits (464), Expect = 1e-52
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P++ DWR+K P +Q CGSCWAFS +EG I TG+L+ S+ +L++C ++
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGS 860
GCDG + S++Y G+ +E++YPY+ G +C K + + N
Sbjct: 62 GCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDE 118
Query: 861 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
++ + + P+SV+ +S Y G + C + HAV VGYGK
Sbjct: 119 ISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIY---EGPCGT-NTDHAVTAVGYGK----T 169
Query: 919 YWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 953
Y L++NSWGP ++G+ +I+R CG+ + +
Sbjct: 170 YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208
Score = 179 bits (458), Expect = 9e-52
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P++ DWR+K P +Q CGSCWAFS +EG I TG+L+ S+ +L++C ++
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 437 GCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-G 494
GC G G ++Y G+ +E++YPY ++ +C K + Y
Sbjct: 62 GCDG--GYQTTSLQYVVDNGVHTEREYPYE---KKQGRCRAKDKKGPKVYITGYKYVPAN 116
Query: 495 SET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 546
E + + + P+SV +S F Y G C + HAV VGY
Sbjct: 117 DEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEG--------PCGT-NTDHAVTAVGY 166
Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 588
GK Y L +NSWGP ++G+ +I+R CG+ + +
Sbjct: 167 GK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208
Score = 71.0 bits (175), Expect = 6e-14
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQ 1017
+ C + HAV VGYGK Y L++NSWGP ++G+ +I+R CG+
Sbjct: 150 EGPCGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYT 204
Query: 1018 IAGY 1021
+ +
Sbjct: 205 SSFF 208
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 181 bits (462), Expect = 4e-52
Identities = 74/238 (31%), Positives = 108/238 (45%), Gaps = 33/238 (13%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
VP + DWRKK DQ CGSCWAFS +EG IKT KLV S+ +LV+C
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 802 S-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHF 857
+ GC+G + + E+ + G+ +E +YPY+ +G C K + +
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPE 118
Query: 858 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 908
N + K + P+SV +++ + G +C +L H V +
Sbjct: 119 NDENALLKAVAN-QPVSVAIDAG--GSDFQFYSEGVFTG--------SCGT-ELDHGVAI 166
Query: 909 VGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYATIDVVKN 961
VGYG D YW V+NSWGP ++G+ ++ERG CGI A Y N
Sbjct: 167 VGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNN 224
Score = 180 bits (459), Expect = 1e-51
Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 33/232 (14%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
VP + DWRKK DQ CGSCWAFS +EG IKT KLV S+ +LV+C
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 71 S-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHF 126
+ GC+G + + E+ + G+ +E +YPY+ +G C K + +
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPE 118
Query: 127 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 177
N + K + P+SV +++ + G +C +L H V +
Sbjct: 119 NDENALLKAVAN-QPVSVAIDAG--GSDFQFYSEGVFTG--------SCGT-ELDHGVAI 166
Query: 178 VGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 224
VGYG D YW V+NSWGP ++G+ ++ERG CGI A Y
Sbjct: 167 VGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
Score = 180 bits (459), Expect = 1e-51
Identities = 74/231 (32%), Positives = 102/231 (44%), Gaps = 30/231 (12%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
VP + DWRKK DQ CGSCWAFS +EG IKT KLV S+ +LV+C
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 436 S-GCGGCDGL-EQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
+ GC G GL + E+ + G+ +E +YPY +G C K +
Sbjct: 62 NQGCNG--GLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENV 116
Query: 493 -NGSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLV 544
E P+SV +++ F + G +C +L H V +V
Sbjct: 117 PENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG--------SCGT-ELDHGVAIV 167
Query: 545 GYGKQDD-IPYWLARNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 590
GYG D YW +NSWGP ++G+ ++ERG CGI A Y
Sbjct: 168 GYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
Score = 72.2 bits (178), Expect = 3e-14
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIERG----NNACGIE 1016
+C +L H V +VGYG D YW V+NSWGP ++G+ ++ERG CGI
Sbjct: 153 TGSCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIA 211
Query: 1017 QIAGYAT 1023
A Y
Sbjct: 212 MEASYPI 218
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 178 bits (454), Expect = 4e-51
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 18/224 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+PD DWR DQ CGS WAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSAWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 70 -CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 125
GCDG F ++ + G+ +E +YPY G +C D + K + + +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEG---QCNLDLQQEKYVSIDTYENVP 117
Query: 126 FNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 183
+N ++ + P+SV L + Y+ C + HAV +VGYG +
Sbjct: 118 YNNEWALQTAVAY-QPVSVALEAAGYNFQHYSSGIF---TGPCGT-AVDHAVTIVGYGTE 172
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYAT 224
I YW+V+NSWG +EG+ +I+R CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
Score = 178 bits (454), Expect = 4e-51
Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 19/225 (8%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+PD DWR DQ CGS WAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSAWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
GCDG + ++ + G+ +E +YPY E+ +C D + K + +
Sbjct: 61 -NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENV 116
Query: 493 N-GSET-MKKILYKYGPLSVGLN-SHLI-HFYNGTPIRKNDETCSPYDLGHAVLLVGYGK 548
+E ++ + P+SV L + Y+ C + HAV +VGYG
Sbjct: 117 PYNNEWALQTAVAY-QPVSVALEAAGYNFQHYSSGIF---TGPCGT-AVDHAVTIVGYGT 171
Query: 549 QDDIPYWLARNSWGPIGPDEGFFKIERG---NNACGIEQIAGYAT 590
+ I YW+ +NSWG +EG+ +I+R CGI + A Y
Sbjct: 172 EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
Score = 178 bits (453), Expect = 5e-51
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 18/224 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+PD DWR DQ CGS WAFS +EG I TG L+ S+ +LV+C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSAWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 801 -CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
GCDG F ++ + G+ +E +YPY G +C D + K + + +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEG---QCNLDLQQEKYVSIDTYENVP 117
Query: 857 FNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 914
+N ++ + P+SV L + Y+ C + HAV +VGYG +
Sbjct: 118 YNNEWALQTAVAY-QPVSVALEAAGYNFQHYSSGIF---TGPCGT-AVDHAVTIVGYGTE 172
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYAT 955
I YW+V+NSWG +EG+ +I+R CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
Score = 74.5 bits (184), Expect = 4e-15
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQI 1018
C + HAV +VGYG + I YW+V+NSWG +EG+ +I+R CGI +
Sbjct: 153 TGPCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKK 211
Query: 1019 AGYAT 1023
A Y
Sbjct: 212 ASYPV 216
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 180 bits (458), Expect = 5e-51
Identities = 60/254 (23%), Positives = 92/254 (36%), Gaps = 41/254 (16%)
Query: 4 EVEKDGPVPDAWDWRKK---NVTGPAGDQAD---CGSCWAFSIAGMLEGQYAIKTG---K 54
E +P +WDWR N +Q CGSCWA + + + IK
Sbjct: 29 EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 88
Query: 55 LVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE---------- 104
S +++C C+G +Y HQ G+ E Y+ + E
Sbjct: 89 STLLSVQNVIDCGN-AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTC 147
Query: 105 -KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNG---TP 158
+FK + L+ D+ +G E M +Y GP+S + L + Y G
Sbjct: 148 NEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLAN-YTGGIYA- 205
Query: 159 IRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACG--- 215
E + H V + G+G D YW+VRNSWG + G+ +I G
Sbjct: 206 -----EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGA 260
Query: 216 -----IEQIAGYAT 224
IE+ +
Sbjct: 261 RYNLAIEEHCTFGD 274
Score = 180 bits (458), Expect = 6e-51
Identities = 60/256 (23%), Positives = 93/256 (36%), Gaps = 44/256 (17%)
Query: 369 EVEKDGPVPDAWDWRKK---NVTGPAGDQAA---CGSCWAFSIAGMLEGQYAIKTG---K 419
E +P +WDWR N +Q CGSCWA + + + IK
Sbjct: 29 EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 88
Query: 420 LVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNGNGE------- 470
S +++C G C+G +Y HQ G+ E Y+ + E
Sbjct: 89 STLLSVQNVIDC----GNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQC 144
Query: 471 ----KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-SHLIHFYNG--- 522
+FK + L+ D+ +G E M +Y GP+S G+ + + Y G
Sbjct: 145 GTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIY 204
Query: 523 TPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACG- 581
E + H V + G+G D YW+ RNSWG + G+ +I G
Sbjct: 205 A------EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGK 258
Query: 582 -------IEQIAGYAT 590
IE+ +
Sbjct: 259 GARYNLAIEEHCTFGD 274
Score = 179 bits (456), Expect = 1e-50
Identities = 60/254 (23%), Positives = 92/254 (36%), Gaps = 41/254 (16%)
Query: 735 EVEKDGPVPDAWDWRKK---NVTGPAGDQAA---CGSCWAFSIAGMLEGQYAIKTG---K 785
E +P +WDWR N +Q CGSCWA + + + IK
Sbjct: 29 EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 88
Query: 786 LVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE---------- 835
S +++C C+G +Y HQ G+ E Y+ + E
Sbjct: 89 STLLSVQNVIDCGN-AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTC 147
Query: 836 -KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNG---TP 889
+FK + L+ D+ +G E M +Y GP+S + L + Y G
Sbjct: 148 NEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLAN-YTGGIYA- 205
Query: 890 IRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACG--- 946
E + H V + G+G D YW+VRNSWG + G+ +I G
Sbjct: 206 -----EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGA 260
Query: 947 -----IEQIAGYAT 955
IE+ +
Sbjct: 261 RYNLAIEEHCTFGD 274
Score = 85.4 bits (212), Expect = 2e-18
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG------- 1014
E + H V + G+G D YW+VRNSWG + G+ +I G
Sbjct: 205 AEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNL 264
Query: 1015 -IEQIAGYAT 1023
IE+ +
Sbjct: 265 AIEEHCTFGD 274
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 176 bits (449), Expect = 1e-50
Identities = 68/219 (31%), Positives = 103/219 (47%), Gaps = 18/219 (8%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P+ DWRKK P +Q CGSCWAFS +E I+TG L+ S+ +LV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 71 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
GC G F + +Y G++++ +YPYK G C V + G + + F +
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAASKVVSI-DGYNGVPFC-N 115
Query: 130 ETMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
E K P +V +++ Y+ L H V +VGY
Sbjct: 116 EXALKQAVAVQPSTVAIDASSAQFQQYSSGIF----SGPCGTKLNHGVTIVGYQA----N 167
Query: 188 YWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 224
YW+VRNSWG ++G+ ++ R G CGI ++ Y T
Sbjct: 168 YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
Score = 176 bits (448), Expect = 1e-50
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P+ DWRKK P +Q +CGSCWAFS +E I+TG L+ S+ +LV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 802 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
GC G F + +Y G++++ +YPYK G C V + G + + F +
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAASKVVSI-DGYNGVPFC-N 115
Query: 861 ETMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
E K P +V +++ Y+ L H V +VGY
Sbjct: 116 EXALKQAVAVQPSTVAIDASSAQFQQYSSGIF----SGPCGTKLNHGVTIVGYQA----N 167
Query: 919 YWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
YW+VRNSWG ++G+ ++ R G CGI ++ Y T
Sbjct: 168 YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
Score = 172 bits (438), Expect = 3e-49
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 23/222 (10%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P+ DWRKK P +Q +CGSCWAFS +E I+TG L+ S+ +LV+C K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 436 SGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
GC G G +Y G++++ +YPY+ G C V + G Y
Sbjct: 61 HGCLG--GAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAASKVVSI-DG----YNG 110
Query: 494 ---GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
+E K P +V +++ F + + + L H V +VGY
Sbjct: 111 VPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT--KLNHGVTIVGYQA-- 166
Query: 551 DIPYWLARNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 590
YW+ RNSWG ++G+ ++ R G CGI ++ Y T
Sbjct: 167 --NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
Score = 59.6 bits (145), Expect = 4e-10
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 965 CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYA 1022
L H V +VGY YW+VRNSWG ++G+ ++ R G CGI ++ Y
Sbjct: 150 PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205
Query: 1023 T 1023
T
Sbjct: 206 T 206
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 175 bits (446), Expect = 2e-49
Identities = 69/270 (25%), Positives = 105/270 (38%), Gaps = 52/270 (19%)
Query: 738 KDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL--VEFSK 791
+D +P ++D R++ DQ +CGS WAF + + I T VE S
Sbjct: 3 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62
Query: 792 SQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEK 836
L+ C C GC+G + + + + GL S Y PY + NG +
Sbjct: 63 EDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGAR 122
Query: 837 FKCAYDK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN- 878
C + + K + + N + + +YK GP+ +
Sbjct: 123 PPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV 182
Query: 879 -SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDE 933
SD + Y K+ GHA+ ++G+G ++ PYWLV NSW G D
Sbjct: 183 YSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DN 234
Query: 934 GFFKIERGNNACGIEQIAGYATIDVVKNDE 963
GFFKI RG + CGIE + E
Sbjct: 235 GFFKILRGQDHCGIESEVVAGIPRTDQYWE 264
Score = 175 bits (446), Expect = 2e-49
Identities = 68/265 (25%), Positives = 102/265 (38%), Gaps = 52/265 (19%)
Query: 7 KDGPVPDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKL--VEFSK 60
+D +P ++D R++ DQ CGS WAF + + I T VE S
Sbjct: 3 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62
Query: 61 SQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEK 105
L+ C C GC+G + + + + GL S Y PY + NG +
Sbjct: 63 EDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGAR 122
Query: 106 FKCAYDK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN- 147
C + + K + + N + + +YK GP+ +
Sbjct: 123 PPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV 182
Query: 148 -SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDE 202
SD + Y K+ GHA+ ++G+G ++ PYWLV NSW G D
Sbjct: 183 YSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DN 234
Query: 203 GFFKIERGNNACGIEQIAGYATIDV 227
GFFKI RG + CGIE
Sbjct: 235 GFFKILRGQDHCGIESEVVAGIPRT 259
Score = 173 bits (441), Expect = 8e-49
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 51/265 (19%)
Query: 372 KDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL--VEFSK 425
+D +P ++D R++ DQ +CGS WAF + + I T VE S
Sbjct: 3 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62
Query: 426 SQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNG-------------NGE 470
L+ C G GC+G + + + GL S Y G NG
Sbjct: 63 EDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGA 121
Query: 471 KFKCAYDK-----------------SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN 513
+ C + + K + + N + + +YK GP+ +
Sbjct: 122 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 181
Query: 514 SHL-IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPI-GPDE 568
+ Y K+ GHA+ ++G+G ++ PYWL NSW G D
Sbjct: 182 VYSDFLLY------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DN 234
Query: 569 GFFKIERGNNACGIEQIAGYATIDV 593
GFFKI RG + CGIE
Sbjct: 235 GFFKILRGQDHCGIESEVVAGIPRT 259
Score = 93.9 bits (234), Expect = 3e-21
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAG 1020
GHA+ ++G+G ++ PYWLV NSW G D GFFKI RG + CGIE
Sbjct: 195 QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVV 253
Query: 1021 YATIDV 1026
Sbjct: 254 AGIPRT 259
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 175 bits (445), Expect = 2e-49
Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 36/244 (14%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
+P + DWR+K DQ CGSCWAFS +EG AI+TG LV S+ +L++C
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 802 S-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKL-----FTGKDF 854
+ GC G + + EY + GL +E YPY+ A G C ++ G
Sbjct: 64 NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGHQD 120
Query: 855 LHFNGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHA 905
+ N E + + + P+SV + + + G C +L H
Sbjct: 121 VPANSEEDLARAVAN-QPVSVAVEAS--GKAFMFYSEGVFTG--------ECGT-ELDHG 168
Query: 906 VLLVGYGK-QDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATIDVVK 960
V +VGYG +D YW V+NSWGP ++G+ ++E+ + A CGI A Y K
Sbjct: 169 VAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYSK 228
Query: 961 NDET 964
T
Sbjct: 229 PKPT 232
Score = 175 bits (445), Expect = 2e-49
Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 36/235 (15%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
+P + DWR+K DQ CGSCWAFS +EG AI+TG LV S+ +L++C
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 71 S-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKL-----FTGKDF 123
+ GC G + + EY + GL +E YPY+ A G C ++ G
Sbjct: 64 NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGHQD 120
Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHA 174
+ N E + + + P+SV + + + G C +L H
Sbjct: 121 VPANSEEDLARAVAN-QPVSVAVEAS--GKAFMFYSEGVFTG--------ECGT-ELDHG 168
Query: 175 VLLVGYGK-QDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
V +VGYG +D YW V+NSWGP ++G+ ++E+ + A CGI A Y
Sbjct: 169 VAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
Score = 174 bits (444), Expect = 2e-49
Identities = 71/234 (30%), Positives = 104/234 (44%), Gaps = 33/234 (14%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P + DWR+K DQ CGSCWAFS +EG AI+TG LV S+ +L++C
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDT-- 61
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG-KDFLY 491
+ GC G ++ EY + GL +E YPYR G C ++ +
Sbjct: 62 ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGH 118
Query: 492 FN---GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAV 541
+ SE P+SV + + F + G C +L H V
Sbjct: 119 QDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTG--------ECGT-ELDHGV 169
Query: 542 LLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
+VGYG +D YW +NSWGP ++G+ ++E+ + A CGI A Y
Sbjct: 170 AVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
Score = 70.0 bits (172), Expect = 3e-13
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIE 1016
C +L H V +VGYG +D YW V+NSWGP ++G+ ++E+ + A CGI
Sbjct: 158 TGECGT-ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIA 216
Query: 1017 QIAGYAT 1023
A Y
Sbjct: 217 MEASYPV 223
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 177 bits (450), Expect = 2e-49
Identities = 75/333 (22%), Positives = 118/333 (35%), Gaps = 70/333 (21%)
Query: 676 KERFEYFKQDGHKKHERYGTS-----EFSDRSPEEILCKTGFKWSERTYERIVADREKVE 730
+ F + + T+ F + + G + V
Sbjct: 4 RPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMF----- 58
Query: 731 KMLMEVEKDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL 786
+D +P ++D R++ DQ +CGSCWAF + + I T
Sbjct: 59 ------TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAH 112
Query: 787 --VEFSKSQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK------------ 830
VE S L+ C C GC+G + + + + GL S Y
Sbjct: 113 VSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCE 172
Query: 831 -NANGEKFKCAYDK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGP 872
+ NG + C + + K + + N + + +YK GP
Sbjct: 173 HHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGP 232
Query: 873 LSVLLN--SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWG 927
+ + SD + Y K+ GHA+ ++G+G ++ PYWLV NSW
Sbjct: 233 VEGAFSVYSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWN 285
Query: 928 PI-GPDEGFFKIERGNNACGIEQ--IAGYATID 957
G D GFFKI RG + CGIE +AG D
Sbjct: 286 TDWG-DNGFFKILRGQDHCGIESEVVAGIPRTD 317
Score = 175 bits (446), Expect = 6e-49
Identities = 70/267 (26%), Positives = 105/267 (39%), Gaps = 54/267 (20%)
Query: 6 EKDGPVPDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKL--VEFS 59
+D +P ++D R++ DQ CGSCWAF + + I T VE S
Sbjct: 59 TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVS 118
Query: 60 KSQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK-------------NANGE 104
L+ C C GC+G + + + + GL S Y + NG
Sbjct: 119 AEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS 178
Query: 105 KFKCAYDK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 147
+ C + + K + + N + + +YK GP+ +
Sbjct: 179 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 238
Query: 148 --SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPD 201
SD + Y K+ GHA+ ++G+G ++ PYWLV NSW G D
Sbjct: 239 VYSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-D 290
Query: 202 EGFFKIERGNNACGIEQ--IAGYATID 226
GFFKI RG + CGIE +AG D
Sbjct: 291 NGFFKILRGQDHCGIESEVVAGIPRTD 317
Score = 174 bits (442), Expect = 2e-48
Identities = 73/333 (21%), Positives = 114/333 (34%), Gaps = 69/333 (20%)
Query: 310 KERFEYFKQDGHKKHERYGTS-----EFSDRSPEEILCKTGFKWSERTYERIVADREKVE 364
+ F + + T+ F + + G + V
Sbjct: 4 RPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMF----- 58
Query: 365 KMLMEVEKDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL 420
+D +P ++D R++ DQ +CGSCWAF + + I T
Sbjct: 59 ------TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAH 112
Query: 421 --VEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNG--------- 467
VE S L+ C G GC+G + + + GL S Y G
Sbjct: 113 VSVEVSAEDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPC 171
Query: 468 ----NGEKFKCAYDK-----------------SKVKLFTGKDFLYFNGSETMKKILYKYG 506
NG + C + + K + + N + + +YK G
Sbjct: 172 EHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNG 231
Query: 507 PLSVGLNSHL-IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWG 562
P+ + + Y K+ GHA+ ++G+G ++ PYWL NSW
Sbjct: 232 PVEGAFSVYSDFLLY------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWN 285
Query: 563 PI-GPDEGFFKIERGNNACGIEQ--IAGYATID 592
G D GFFKI RG + CGIE +AG D
Sbjct: 286 TDWG-DNGFFKILRGQDHCGIESEVVAGIPRTD 317
Score = 92.8 bits (231), Expect = 2e-20
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQ--I 1018
GHA+ ++G+G ++ PYWLV NSW G D GFFKI RG + CGIE +
Sbjct: 252 QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVV 310
Query: 1019 AGYATID 1025
AG D
Sbjct: 311 AGIPRTD 317
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 174 bits (444), Expect = 2e-49
Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 52/260 (20%)
Query: 11 VPDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 64
+P ++D RKK DQ+ CGSCWAF + + I++G + VE S L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 65 ECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK-------------NANGEKFKCAY 110
C + C GC+G P+ +Y + G+ + + G+ C
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 111 DK------------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDL 150
++ K + N + ++K + KYGP+ D
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDF 182
Query: 151 IHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFK 206
++ Y K+ GHA+ ++G+G ++ PYWL+ NSW G + G+F+
Sbjct: 183 LN-Y------KSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYFR 234
Query: 207 IERGNNACGIEQIAGYATID 226
I RG + C IE I+
Sbjct: 235 IVRGRDECSIESEVTAGRIN 254
Score = 174 bits (443), Expect = 3e-49
Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 52/260 (20%)
Query: 742 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 795
+P ++D RKK DQ+ CGSCWAF + + I++G + VE S L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 796 ECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK-------------NANGEKFKCAY 841
C + C GC+G P+ +Y + G+ + + G+ C
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 842 DK------------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDL 881
++ K + N + ++K + KYGP+ D
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDF 182
Query: 882 IHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFK 937
++ Y K+ GHA+ ++G+G ++ PYWL+ NSW G + G+F+
Sbjct: 183 LN-Y------KSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYFR 234
Query: 938 IERGNNACGIEQIAGYATID 957
I RG + C IE I+
Sbjct: 235 IVRGRDECSIESEVTAGRIN 254
Score = 173 bits (442), Expect = 4e-49
Identities = 63/261 (24%), Positives = 101/261 (38%), Gaps = 53/261 (20%)
Query: 376 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 429
+P ++D RKK DQ+ CGSCWAF + + I++G + VE S L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 430 ECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNG-------------NGEKFKC 474
C + C GC+G L +Y + G+ + G G+ C
Sbjct: 63 SCCESCGL--GCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPC 120
Query: 475 AYDK------------------SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHL 516
++ K + N + ++K + KYGP+ G +
Sbjct: 121 GSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE 180
Query: 517 -IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPI-GPDEGFF 571
Y K+ GHA+ ++G+G ++ PYWL NSW G + G+F
Sbjct: 181 DFLNY------KSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYF 233
Query: 572 KIERGNNACGIEQIAGYATID 592
+I RG + C IE I+
Sbjct: 234 RIVRGRDECSIESEVTAGRIN 254
Score = 95.4 bits (238), Expect = 5e-22
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAG 1020
GHA+ ++G+G ++ PYWL+ NSW G + G+F+I RG + C IE
Sbjct: 191 KHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYFRIVRGRDECSIESEVT 249
Query: 1021 YATID 1025
I+
Sbjct: 250 AGRIN 254
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 173 bits (441), Expect = 3e-49
Identities = 68/233 (29%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 11 VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
+P DWR + P DQ DCGSCWAFS G LEG + KTGKLV S+ +L++C++
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 70 -CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHF 126
C G + +Y G+ SE YPY + +C + + G +
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE---ECRAQSCEKVVKILGFKDVPR 123
Query: 127 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 177
MK L K P+S+ + +D ++ +C DL H VLL
Sbjct: 124 RSEAAMKAALAK-SPVSIAIEAD--QMPFQFYHEGVFDA--------SCGT-DLDHGVLL 171
Query: 178 VGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI 225
VGYG K+ +W+++NSWG +G+ + CG+ A + +
Sbjct: 172 VGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224
Score = 172 bits (439), Expect = 4e-49
Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 33/233 (14%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
+P DWR + P DQ CGSCWAFS G LEG + KTGKLV S+ +L++C++
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 801 -CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHF 857
C G + +Y G+ SE YPY + +C + + G +
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE---ECRAQSCEKVVKILGFKDVPR 123
Query: 858 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 908
MK L K P+S+ + +D ++ +C DL H VLL
Sbjct: 124 RSEAAMKAALAK-SPVSIAIEAD--QMPFQFYHEGVFDA--------SCGT-DLDHGVLL 171
Query: 909 VGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI 956
VGYG K+ +W+++NSWG +G+ + CG+ A + +
Sbjct: 172 VGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224
Score = 172 bits (439), Expect = 5e-49
Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 34/234 (14%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
+P DWR + P DQ CGSCWAFS G LEG + KTGKLV S+ +L++C++
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA- 65
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
G C G + +Y G+ SE YPY + +C + K +
Sbjct: 66 EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE---ECRAQSCEK---VVKILGFK 119
Query: 493 N---GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVL 542
+ SE K P+S+ + + + F ++ +C DL H VL
Sbjct: 120 DVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDA--------SCGT-DLDHGVL 170
Query: 543 LVGYGKQDD--IPYWLARNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI 591
LVGYG + +W+ +NSWG +G+ + CG+ A + +
Sbjct: 171 LVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224
Score = 70.3 bits (173), Expect = 1e-13
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 962 DETCSPYDLGHAVLLVGYGKQDD--IPYWLVRNSWGPIGPDEGFFKIERG---NNACGIE 1016
D +C DL H VLLVGYG + +W+++NSWG +G+ + CG+
Sbjct: 158 DASCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLL 216
Query: 1017 QIAGYATI 1024
A + +
Sbjct: 217 LDASFPVM 224
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 170 bits (432), Expect = 3e-48
Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 14/222 (6%)
Query: 12 PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
P + DWRKK DQ CG CWAF G +EG AI TG+L+ S+ Q+V+C
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 72 GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
G + + + G+ S+ +YPY +G C +K G + + S
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDG--YTNVPNSS 116
Query: 131 TMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDE-TCSPYDLGHAVLLVGYGKQ-DNI 186
+ P+SV + + Y G I + P + H VL+VGYG N
Sbjct: 117 SALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNA 176
Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
YW+V+NSWG +G+ I R N C I+ Y T
Sbjct: 177 DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
Score = 170 bits (431), Expect = 3e-48
Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 14/222 (6%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
P + DWRKK DQ ACG CWAF G +EG AI TG+L+ S+ Q+V+C
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 803 GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
G + + + G+ S+ +YPY +G C +K G + + S
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDG--YTNVPNSS 116
Query: 862 TMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDE-TCSPYDLGHAVLLVGYGKQ-DNI 917
+ P+SV + + Y G I + P + H VL+VGYG N
Sbjct: 117 SALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNA 176
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
YW+V+NSWG +G+ I R N C I+ Y T
Sbjct: 177 DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
Score = 166 bits (422), Expect = 6e-47
Identities = 67/223 (30%), Positives = 94/223 (42%), Gaps = 15/223 (6%)
Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
P + DWRKK DQ ACG CWAF G +EG AI TG+L+ S+ Q+V+C
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 437 GCGGCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
G D + + G+ S+ +YPY +G C +K G + S
Sbjct: 62 XXXGGD-ADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDG--YTNVPNS 115
Query: 496 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDE-TCSPYDLGHAVLLVGYGKQDD- 551
+ P+SV + + Y G I + P + H VL+VGYG
Sbjct: 116 SSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTN 175
Query: 552 IPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
YW+ +NSWG +G+ I R N C I+ Y T
Sbjct: 176 ADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
Score = 61.0 bits (148), Expect = 2e-10
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 964 TCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQI 1018
+ P + H VL+VGYG YW+V+NSWG +G+ I R N C I+
Sbjct: 154 SDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAW 213
Query: 1019 AGYAT 1023
Y T
Sbjct: 214 GSYPT 218
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 167 bits (424), Expect = 2e-46
Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 28/236 (11%)
Query: 369 EVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQL 428
E +P D DQ GSC A ++A ++ + I + EF S+L
Sbjct: 50 EKSVIAALPPKVDLTPP---FQVYDQGRIGSCTANALAAAIQFER-IHDKQSPEFIPSRL 105
Query: 429 VEC--AKQCSGCGGCDG---LEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKL 483
++ G D + I+ H+ G+ EK++PY + + +
Sbjct: 106 FIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPAS 165
Query: 484 FTGKDFLYFNGS--------------ETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRK 527
D Y + + +K L P G + + + +
Sbjct: 166 KKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP 225
Query: 528 NDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGI 582
+ GHAVL VGY D+I ++ RNSWG ++G+F + + +
Sbjct: 226 LPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279
Score = 164 bits (416), Expect = 3e-45
Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 29/236 (12%)
Query: 4 EVEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQL 63
E +P D DQ GSC A ++A ++ + I + EF S+L
Sbjct: 50 EKSVIAALPPKVDLTPP---FQVYDQGRIGSCTANALAAAIQFER-IHDKQSPEFIPSRL 105
Query: 64 VECAKQ-----CSGCD-GCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS---- 113
+ D G I+ H+ G+ EK++PY + + +
Sbjct: 106 FIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPAS 165
Query: 114 ---------KVKLFTGKDFLHFNGSET-MKKILYKYGPLSV--LLNSDLIHDYNGTPIRK 161
+ + ++ +K L P + + + + +
Sbjct: 166 KKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP 225
Query: 162 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 216
+ GHAVL VGY D I ++ +RNSWG ++G+F + + +
Sbjct: 226 LPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279
Score = 163 bits (413), Expect = 6e-45
Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 29/236 (12%)
Query: 735 EVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQL 794
E +P D DQ GSC A ++A ++ + I + EF S+L
Sbjct: 50 EKSVIAALPPKVDLTPP---FQVYDQGRIGSCTANALAAAIQFER-IHDKQSPEFIPSRL 105
Query: 795 VECAKQ-----CSGCD-GCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS---- 844
+ D G I+ H+ G+ EK++PY + + +
Sbjct: 106 FIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPAS 165
Query: 845 ---------KVKLFTGKDFLHFNGSET-MKKILYKYGPLSV--LLNSDLIHDYNGTPIRK 892
+ + ++ +K L P + + + + +
Sbjct: 166 KKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP 225
Query: 893 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 947
+ GHAVL VGY D I ++ +RNSWG ++G+F + + +
Sbjct: 226 LPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279
Score = 67.6 bits (165), Expect = 3e-12
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 959 VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 1015
+ + GHAVL VGY D+I ++ +RNSWG ++G+F + + +
Sbjct: 224 IPLPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 6e-11
Identities = 123/777 (15%), Positives = 217/777 (27%), Gaps = 309/777 (39%)
Query: 274 TLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERF--------EYFKQDGHKKHE 325
TL+ GSL +V + +++E+F E F D
Sbjct: 10 TLS-HGSLEH----------VLLVPTA-SFFIASQLQEQFNKILPEPTEGFAAD------ 51
Query: 326 RYGTSEFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKD---GPVPDAWD 381
E + +P E++ K G+ S ++ + + L E E G
Sbjct: 52 ----DEPT--TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG------- 98
Query: 382 WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC---AKQCSGC 438
++ ++A L + K +L++ A+ +
Sbjct: 99 ---NDI---------------HALAAKLLQENDTTLVK-----TKELIKNYITARIMAK- 134
Query: 439 GGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFT-----GKDFLYFN 493
+P + + L F+ + +L G YF
Sbjct: 135 -------RPFDKKSNSAL---------------FRAV-GEGNAQLVAIFGGQGNTDDYF- 170
Query: 494 GSETMKKILYK-YGPLSVGLNSHLIHFYNGT--PIRKNDETCSPYDLGHAVLLVGYGKQD 550
E ++ LY+ Y L VG LI F T + + + +
Sbjct: 171 -EE-LRD-LYQTYHVL-VG---DLIKFSAETLSELIRTTLDAEKV----------FTQGL 213
Query: 551 DIPYWLARNSWGPIG-PDEGFFK--------IERGNNACGIEQIAGYATIDVVIQRLVLE 601
+I WL P PD+ + I G+ Q+A Y V + L
Sbjct: 214 NILEWLE----NPSNTPDKDYLLSIPISCPLI-------GVIQLAHYV---VTAKLLGFT 259
Query: 602 KKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDN--ENILETFK 659
+ L G V A +AI + ++++ ++ +
Sbjct: 260 PGELRSY-----LKGATGH---------SQGLVTA----VAIAETDSWESFFVSVRKAIT 301
Query: 660 A--FIVKRGRQYANDEEIKERF-EYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSE 716
FI R + + + E ++ G SP +L +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNE------GVP-----SP--MLSISN----- 343
Query: 717 RTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLE 776
+E+V+ + K N PAG Q I+
Sbjct: 344 -------LTQEQVQDYV---------------NKTNSHLPAGKQV--------EIS---- 369
Query: 777 GQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEK 836
LV LV SG P Y GL N K
Sbjct: 370 ---------LVN-GAKNLV-----VSG------PPQSLY----GL---------NLTLRK 395
Query: 837 FKCA--YDKSKV-----KLFTGKDFL------HFNGSETMK----KILYKYGPLSVLLN- 878
K D+S++ KL FL H S + I +V N
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH---SHLLVPASDLINKDLVKNNVSFNA 452
Query: 879 SDL---IHD-YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW--LVRNS------W 926
D+ ++D ++G+ +R + S + ++ + + W + +
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISE-RIVDCII------RLPV-KWETTTQFKATHILDF 504
Query: 927 GPIGPDEGFFK-IERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQ 982
GP G G R + G+ I T+D+ +D+ G+ KQ
Sbjct: 505 GP-GGASGLGVLTHRNKDGTGVRVIVA-GTLDINPDDD-------------YGF-KQ 545
Score = 48.1 bits (114), Expect = 2e-05
Identities = 93/576 (16%), Positives = 152/576 (26%), Gaps = 216/576 (37%)
Query: 106 FKCAYDKSKVKLFTGKDFLHFNG---SET----MKKILYK-YGPLSVLLNSDLIHDYNGT 157
F+ + +L F G ++ ++ LY+ Y L DLI T
Sbjct: 146 FRAV-GEGNAQLVA-----IFGGQGNTDDYFEELRD-LYQTYHVLV----GDLIKFSAET 194
Query: 158 --PIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIG-PDEGFFK-------- 206
+ + + + NI WL P PD+ +
Sbjct: 195 LSELIRTTLDAEKV----------FTQGLNILEWLE----NPSNTPDKDYLLSIPISCPL 240
Query: 207 IERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITD 266
I G+ Q+A Y V + L + L G
Sbjct: 241 I-------GVIQLAHYV---VTAKLLGFTPGELRSY-----LKGATGH---------SQG 276
Query: 267 QVVARVDTLAIEGSLTFDN--ENILETFKA--FIVKRGRQYANDEEIKERF-EYFKQDGH 321
V A +AI + ++++ ++ + FI R + + + E ++
Sbjct: 277 LVTA----VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 322 KKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWD 381
G SP +L + +E+V+ +
Sbjct: 333 ------GVP-----SP--MLSISN------------LTQEQVQDYV-------------- 353
Query: 382 WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGC 441
K N PAG Q I+ LV LV SG
Sbjct: 354 -NKTNSHLPAGKQV--------EIS-------------LVN-GAKNLV-----VSG---- 381
Query: 442 DGLEQPIE--YTHQAGLESEKDYPYRNGNGEKFKCA--YDKSKVKLFTGKDFLYFNGSET 497
P + Y GL K K D+S++ SE
Sbjct: 382 -----PPQSLY----GLNLTL---------RKAKAPSGLDQSRIPF-----------SER 412
Query: 498 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLA 557
K ++ P++ P+ H+ LLV D I L
Sbjct: 413 KLKFSNRFLPVAS-----------------------PF---HSHLLVPA--SDLINKDLV 444
Query: 558 RNSWGPIGPDEGF--FKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLC 615
+N+ D + G++ + +D +I+ V + L
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 616 GVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDN 651
G L LT R D RV I T D
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRV----IVAG-TLDI 535
Score = 41.2 bits (96), Expect = 0.002
Identities = 39/244 (15%), Positives = 70/244 (28%), Gaps = 78/244 (31%)
Query: 633 QVVARVDTLAIEGSLTFD-----NENILETFKAFIVKRGRQYANDEEIKERFEYFK---- 683
V R D + + F N + F ++G++ I+E +
Sbjct: 1644 DVWNRADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKR------IRENYSAMIFETI 1696
Query: 684 QDGHKKHER------YGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEV- 736
DG K E+ ++ ++ RS + +L T F T + +EK E
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-----TQPALTL----MEKAAFEDL 1747
Query: 737 EKDGPVPDAWDWRKKNVTGPAGDQAACG-SCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV 795
+ G +P D G S L G+Y + L
Sbjct: 1748 KSKGLIPA--------------DATFAGHS---------L-GEY------------AALA 1771
Query: 796 ECAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFK-CAYDKSKVKLFTGKD 853
A E +E G+ + P + A + +V ++
Sbjct: 1772 SLA-------DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 854 FLHF 857
L +
Sbjct: 1825 ALQY 1828
Score = 39.6 bits (92), Expect = 0.007
Identities = 49/297 (16%), Positives = 93/297 (31%), Gaps = 92/297 (30%)
Query: 267 QVVARVDTLAIEGSLTFD-----NENILETFKAFIVKRGRQYANDEEIKERFEYFK---- 317
V R D + + F N + F ++G++ I+E +
Sbjct: 1644 DVWNRADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKR------IRENYSAMIFETI 1696
Query: 318 QDGHKKHER------YGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEV- 370
DG K E+ ++ ++ RS + +L T F T + +EK E
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-----TQPALTL----MEKAAFEDL 1747
Query: 371 EKDGPVPDAWDWRKKNVTGPAGDQAACG------SCWAF-SIAGMLEGQYAIKT----GK 419
+ G +P D G + A S+A ++ + ++ G
Sbjct: 1748 KSKGLIPA--------------DATFAGHSLGEYA--ALASLADVMSIESLVEVVFYRGM 1791
Query: 420 LV-------EFSKSQLVECA---KQCSGCGGCDGLEQPIEYTHQAGLESEKD-----YPY 464
+ E +S A + + + L+ +E + G + Y
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE---RVGKRTGWLVEIVNY-- 1846
Query: 465 RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-----SHL 516
N +++ A D + T + L F ++KI L L+ HL
Sbjct: 1847 -NVENQQYVAAGDLRALDTVT--NVLNFIK---LQKI--DIIELQKSLSLEEVEGHL 1895
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 54.1 bits (129), Expect = 1e-07
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 12/103 (11%)
Query: 747 DWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK------- 799
K+N +Q G+CW +S LE + + S+ V
Sbjct: 15 TTVKENPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAA 74
Query: 800 -----QCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKF 837
S G F ++ GL E++ +
Sbjct: 75 VRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMRPGMMYADTL 117
Score = 53.3 bits (127), Expect = 2e-07
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 12/103 (11%)
Query: 16 DWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK------- 68
K+N +Q G+CW +S LE + + S+ V
Sbjct: 15 TTVKENPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAA 74
Query: 69 -----QCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKF 106
S G F ++ GL E++ +
Sbjct: 75 VRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMRPGMMYADTL 117
Score = 49.5 bits (117), Expect = 4e-06
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 381 DWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 434
K+N +Q G+CW +S LE + + S+ V
Sbjct: 15 TTVKENPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYL 68
Score = 39.8 bits (92), Expect = 0.004
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 972 HAVLLVGYGK-QDDIPYWLVRNSWGPIGPDEGFFKI 1006
H + + G K Q+ Y++V+NSWG G +
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353
Score = 39.4 bits (91), Expect = 0.004
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 173 HAVLLVGYGKQDN-IPYWLVRNSWGPIGPDEGFFKI 207
H + + G K Y++V+NSWG G +
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353
Score = 39.4 bits (91), Expect = 0.004
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 904 HAVLLVGYGKQDN-IPYWLVRNSWGPIGPDEGFFKI 938
H + + G K Y++V+NSWG G +
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353
Score = 38.3 bits (88), Expect = 0.012
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 539 HAVLLVGYGK-QDDIPYWLARNSWGPIGPDEGFFKI 573
H + + G K Q+ Y++ +NSWG G +
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 106
Score = 44.0 bits (104), Expect = 1e-05
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 280 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSE 331
+ + + F +F + YA +EE + R+ FK H ++ Y +
Sbjct: 13 IWEWKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNH 72
Query: 332 FSDRSPEEILCK-TGFKWSER 351
F D S +E K GFK S
Sbjct: 73 FGDLSRDEFRRKYLGFKKSRN 93
Score = 44.0 bits (104), Expect = 1e-05
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 646 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSE 697
+ + + F +F + YA +EE + R+ FK H ++ Y +
Sbjct: 13 IWEWKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNH 72
Query: 698 FSDRSPEEILCK-TGFKWSER 717
F D S +E K GFK S
Sbjct: 73 FGDLSRDEFRRKYLGFKKSRN 93
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic
disorder P like protein, hydrolase; NMR {Drosophila
melanogaster}
Length = 80
Score = 36.2 bits (84), Expect = 0.004
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 280 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHE------RY 327
SL D E + + K + Y +E+ R + + + H +K E +
Sbjct: 3 SLVSDEE-----WVEYKSKFDKNYEAEED-LMRRRIYAESKARIEEHNRKFEKGEVTWKM 56
Query: 328 GTSEFSDRSPEEILCKTGFK 347
G + +D +PEE ++G K
Sbjct: 57 GINHLADLTPEEFAQRSGKK 76
Score = 36.2 bits (84), Expect = 0.004
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 646 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHE------RY 693
SL D E + + K + Y +E+ R + + + H +K E +
Sbjct: 3 SLVSDEE-----WVEYKSKFDKNYEAEED-LMRRRIYAESKARIEEHNRKFEKGEVTWKM 56
Query: 694 GTSEFSDRSPEEILCKTGFK 713
G + +D +PEE ++G K
Sbjct: 57 GINHLADLTPEEFAQRSGKK 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.028
Identities = 65/440 (14%), Positives = 121/440 (27%), Gaps = 170/440 (38%)
Query: 84 YTHQAGLE-SEKDYPYKN---ANGEKFKCAYDKSKVK-----LFTGKDFLH-FNGSETMK 133
+ H E E Y YK+ + F +D V+ + + ++ H + +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 134 KILYKYGPL--------SVLLNSDLIHDYN--GTPIRK--------------------ND 163
L + L + L +Y +PI+ ND
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 164 -ETCSPYD----------------LGHAVLLV-----GYGKQ-----------------D 184
+ + Y+ L A ++ G GK
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 185 NIPYWLVRNSWGPIGPDEGFFKI-------------ERGNNACGIEQIAGYATIDVVIQR 231
I +WL + E ++ R +++ I+ +I ++R
Sbjct: 183 KI-FWL---NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRR 236
Query: 232 LVLEKKA----IML--------IQAVFLLCGVASCLCLPSLTDR---ITDQVVA--RVDT 274
L+ K ++L A F L SC L LT R +TD + A
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNA-FNL----SCKIL--LTTRFKQVTDFLSAATTTHI 289
Query: 275 LAIEGSLTFDNENILETFKAFIVKRGRQYAND-----------------EEIKE---RFE 314
S+T + + ++ R D E I++ ++
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCR----PQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 315 YFKQDGHKKH-----------------ERYGT-SEFSDRS--PEEILCKTGFKWSERTYE 354
+K K + + S F + P +L W +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKS 402
Query: 355 RIVADREKVEKMLMEVEKDG 374
++ K+ K + VEK
Sbjct: 403 DVMVVVNKLHKYSL-VEKQP 421
Score = 37.5 bits (86), Expect = 0.028
Identities = 76/544 (13%), Positives = 143/544 (26%), Gaps = 178/544 (32%)
Query: 474 CAYDKSKVKLFTGKDFLYFNGSETMKKILYKY-GP--LSVGLNSHLIHFYNGTPIRKNDE 530
+ + V+ F + L N M I + P ++ YN +
Sbjct: 72 LSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 531 TCSP----------YDLGHAVLLV-----GYGKQDDIPYWLA----RNS----------- 560
+L A ++ G GK W+A +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-----WVALDVCLSYKVQCKMDFKIF 185
Query: 561 WGPIG----PDEGFFKIERGNNAC------GIEQIAGYATIDVVIQRLVLEKKAIMLIQ- 609
W + P+ +E + + I + I + E + ++ +
Sbjct: 186 WLNLKNCNSPET---VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 610 ---AVFLLCGVAS----------CLCLPSLTDR---ITDQVVA--RVDTLAIEGSLTFDN 651
+ +L V + C L LT R +TD + A S+T
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 652 ENILETFKAFIVKRGRQYAND-----------------EEIKE---RFEYFKQDGHKKH- 690
+ + ++ R D E I++ ++ +K K
Sbjct: 301 DEVKSLLLKYLDCR----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 691 ----------------ERYGT-SEFSDRS--PEEILCKTGFKWSERTYERIVADREKVEK 731
+ + S F + P +L W + ++ K+ K
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHK 413
Query: 732 MLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSK 791
+ VEK K++ + LE +YA+ +V+
Sbjct: 414 YSL-VEK---------QPKESTISIPSIY--------LELKVKLENEYALHR-SIVDHYN 454
Query: 792 SQLVECAKQCS--GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF 849
+ D F+ I + H +E + E+ LF
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYS-HIGH-HLKNIE----------HPERM---------TLF 493
Query: 850 TGKDFLHFNGSETMKKILYK----YGPLSVLLNSDLIHD---YNGTPIRKNDETCSPY-- 900
FL F E +KI + S+L + + Y I ND
Sbjct: 494 R-MVFLDFRFLE--QKIRHDSTAWNASGSIL---NTLQQLKFYKPY-ICDNDPKYERLVN 546
Query: 901 DLGH 904
+
Sbjct: 547 AILD 550
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR
{Streptomyces lividans} SCOP: a.181.1.1
Length = 143
Score = 35.3 bits (81), Expect = 0.032
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 310 KERFEYFKQDGHKKH-----ERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVE 364
+E+FE F ++ ER+G ++ +S E+ +++ ++RI + +++
Sbjct: 7 EEKFEVFGDFDPDQYEEEVRERWGNTDAYRQSKEKTA-----SYTKEDWQRIQDEADELT 61
Query: 365 KMLMEVEKDGPVPDA 379
+ + + G D+
Sbjct: 62 RRFVALMDAGEPADS 76
Score = 35.3 bits (81), Expect = 0.032
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 676 KERFEYFKQDGHKKH-----ERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVE 730
+E+FE F ++ ER+G ++ +S E+ +++ ++RI + +++
Sbjct: 7 EEKFEVFGDFDPDQYEEEVRERWGNTDAYRQSKEKTA-----SYTKEDWQRIQDEADELT 61
Query: 731 KMLMEVEKDGPVPDA 745
+ + + G D+
Sbjct: 62 RRFVALMDAGEPADS 76
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 34.3 bits (78), Expect = 0.23
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 173 HAVLLVGYGKQDN---IPYWLVRNSWGPIGPDEGFF 205
A+L+ G + + V NSWG +G +
Sbjct: 373 AAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 408
Score = 34.3 bits (78), Expect = 0.23
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 904 HAVLLVGYGKQDN---IPYWLVRNSWGPIGPDEGFF 936
A+L+ G + + V NSWG +G +
Sbjct: 373 AAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 408
Score = 33.9 bits (77), Expect = 0.26
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 972 HAVLLVGYGKQDD---IPYWLVRNSWGPIGPDEGFF 1004
A+L+ G + + V NSWG +G +
Sbjct: 373 AAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 408
Score = 32.8 bits (74), Expect = 0.67
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 539 HAVLLVGYGKQDD---IPYWLARNSWGPIGPDEGFF 571
A+L+ G + + NSWG +G +
Sbjct: 373 AAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 408
Score = 32.4 bits (73), Expect = 0.89
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 388 TGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ 427
+ P +Q + G CW F+ L + L EF SQ
Sbjct: 65 STPVTNQKSSGRCWLFAATNQLR-LNVLSELNLKEFELSQ 103
Score = 32.4 bits (73), Expect = 0.89
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 754 TGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ 793
+ P +Q + G CW F+ L + L EF SQ
Sbjct: 65 STPVTNQKSSGRCWLFAATNQLR-LNVLSELNLKEFELSQ 103
Score = 31.6 bits (71), Expect = 1.3
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 23 TGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ 62
+ P +Q G CW F+ L + L EF SQ
Sbjct: 65 STPVTNQKSSGRCWLFAATNQLR-LNVLSELNLKEFELSQ 103
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.27
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 337 PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK 385
PE I KW E +R+ + + K++ + ++ D +W ++
Sbjct: 84 PESIR-----KWREEQRKRL-QELDAASKVMEQEWREKAKKDLEEWNQR 126
Score = 33.2 bits (75), Expect = 0.27
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 703 PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK 751
PE I KW E +R+ + + K++ + ++ D +W ++
Sbjct: 84 PESIR-----KWREEQRKRL-QELDAASKVMEQEWREKAKKDLEEWNQR 126
Score = 30.1 bits (67), Expect = 2.5
Identities = 11/76 (14%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 269 VARVDTLAIEGSLTFDNENIL---ETFKAFIVKRGRQ-YANDEEIKERFEYFKQDGHKKH 324
+A+ D L E E+I E + + + ++E +E+ + ++ +++
Sbjct: 74 IAQADRLTQEP------ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 325 -ERYGTSEFSDRSPEE 339
E+ ++ ++R ++
Sbjct: 128 SEQVEKNKINNRIADK 143
Score = 30.1 bits (67), Expect = 2.5
Identities = 11/76 (14%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 635 VARVDTLAIEGSLTFDNENIL---ETFKAFIVKRGRQ-YANDEEIKERFEYFKQDGHKKH 690
+A+ D L E E+I E + + + ++E +E+ + ++ +++
Sbjct: 74 IAQADRLTQEP------ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 691 -ERYGTSEFSDRSPEE 705
E+ ++ ++R ++
Sbjct: 128 SEQVEKNKINNRIADK 143
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 32.4 bits (73), Expect = 0.84
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 173 HAVLLVGYGKQDNIP----YWLVRNSWGPIGPDEGFF 205
HA+ ++D+ W V NSWG +G+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
Score = 32.4 bits (73), Expect = 0.84
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 904 HAVLLVGYGKQDNIP----YWLVRNSWGPIGPDEGFF 936
HA+ ++D+ W V NSWG +G+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
Score = 32.4 bits (73), Expect = 0.90
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 972 HAVLLVGYGKQDDIP----YWLVRNSWGPIGPDEGFF 1004
HA+ ++DD W V NSWG +G+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
Score = 32.0 bits (72), Expect = 1.00
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 363 VEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL-V 421
+ + ++ + P +Q + G W FS ++ + K
Sbjct: 35 LLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEF 94
Query: 422 EFSKS 426
EFS+S
Sbjct: 95 EFSQS 99
Score = 32.0 bits (72), Expect = 1.00
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 729 VEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL-V 787
+ + ++ + P +Q + G W FS ++ + K
Sbjct: 35 LLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEF 94
Query: 788 EFSKS 792
EFS+S
Sbjct: 95 EFSQS 99
Score = 31.7 bits (71), Expect = 1.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 23 TGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKL-VEFSKS 61
P +Q G W FS ++ + K EFS+S
Sbjct: 60 GKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQS 99
Score = 30.5 bits (68), Expect = 3.4
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 539 HAVLLVGYGKQDDIP----YWLARNSWGPIGPDEGFF 571
HA+ ++DD W NSWG +G+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 30.2 bits (69), Expect = 1.0
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 259 SLTDRITDQ-VVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 317
+ D + + +D + EG +F+ K F G + + ++K+ F+
Sbjct: 2 AAKDLLKADDIKKALDAVKAEG--SFN-------HKKFFALVGLKAMSANDVKKVFKAID 52
Query: 318 QDG 320
D
Sbjct: 53 ADA 55
Score = 30.2 bits (69), Expect = 1.0
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 625 SLTDRITDQ-VVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 683
+ D + + +D + EG +F+ K F G + + ++K+ F+
Sbjct: 2 AAKDLLKADDIKKALDAVKAEG--SFN-------HKKFFALVGLKAMSANDVKKVFKAID 52
Query: 684 QDG 686
D
Sbjct: 53 ADA 55
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 29.8 bits (68), Expect = 1.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 292 FKAFIVKRGRQYANDEEIKERFEYFKQDG 320
+K F G + D ++KE FE +D
Sbjct: 26 YKRFFHLVGLKGKTDAQVKEVFEILDKDQ 54
Score = 29.8 bits (68), Expect = 1.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 658 FKAFIVKRGRQYANDEEIKERFEYFKQDG 686
+K F G + D ++KE FE +D
Sbjct: 26 YKRFFHLVGLKGKTDAQVKEVFEILDKDQ 54
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 29.9 bits (68), Expect = 1.4
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 259 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 317
SLTD ++ + A + + +F K F G + ++KE F
Sbjct: 1 SLTDILSPSDIAAALR--DCQAPDSFS-------PKKFFQISGMSKKSSSQLKEIFRILD 51
Query: 318 QDG 320
D
Sbjct: 52 NDQ 54
Score = 29.9 bits (68), Expect = 1.4
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 625 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 683
SLTD ++ + A + + +F K F G + ++KE F
Sbjct: 1 SLTDILSPSDIAAALR--DCQAPDSFS-------PKKFFQISGMSKKSSSQLKEIFRILD 51
Query: 684 QDG 686
D
Sbjct: 52 NDQ 54
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 292 FKAFIVKRGRQYANDEEIKERFEYFKQDG 320
K F K G + +++K+ F QD
Sbjct: 26 HKEFFAKVGLASKSLDDVKKAFYVIDQDK 54
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 658 FKAFIVKRGRQYANDEEIKERFEYFKQDG 686
K F K G + +++K+ F QD
Sbjct: 26 HKEFFAKVGLASKSLDDVKKAFYVIDQDK 54
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 29.2 bits (66), Expect = 2.2
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 259 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 317
S+TD ++ + + S FD K F G + + +++K+ F
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAADS--FD-------HKKFFQMVGLKKKSADDVKKVFHILD 51
Query: 318 QDG 320
+D
Sbjct: 52 KDK 54
Score = 29.2 bits (66), Expect = 2.2
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 625 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 683
S+TD ++ + + S FD K F G + + +++K+ F
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAADS--FD-------HKKFFQMVGLKKKSADDVKKVFHILD 51
Query: 684 QDG 686
+D
Sbjct: 52 KDK 54
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid,
hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1
d.17.1.4
Length = 367
Score = 30.0 bits (66), Expect = 4.0
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 23/144 (15%)
Query: 62 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKD---YPYKNANGEKFK-CAYDKSKVKL 117
++ E S C G + T + D Y + + CA +++
Sbjct: 198 KIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIE 257
Query: 118 FT---GKDFLHFNGSET---MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDL 171
+ G+D + G + + ++ + +L S + + L
Sbjct: 258 YGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQS-------------VSQNPNDPHL 304
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSW 195
GHA+ +VG K ++ + N W
Sbjct: 305 GHALAVVGNAKINDQEKLIYWNPW 328
Score = 30.0 bits (66), Expect = 4.0
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 23/144 (15%)
Query: 793 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKD---YPYKNANGEKFK-CAYDKSKVKL 848
++ E S C G + T + D Y + + CA +++
Sbjct: 198 KIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIE 257
Query: 849 FT---GKDFLHFNGSET---MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
+ G+D + G + + ++ + +L S + + L
Sbjct: 258 YGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQS-------------VSQNPNDPHL 304
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSW 926
GHA+ +VG K ++ + N W
Sbjct: 305 GHALAVVGNAKINDQEKLIYWNPW 328
Score = 28.8 bits (63), Expect = 9.9
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 948 EQIAGYATI--DVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSW 994
+ I + + LGHA+ +VG K +D + N W
Sbjct: 280 QLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPW 328
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 28.4 bits (64), Expect = 4.6
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 259 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 317
+ + + D V A + A E + +F+ +KAF K G + ++IK+ F
Sbjct: 2 AFSGILADADVAAALK--ACEAADSFN-------YKAFFAKVGLTAKSADDIKKAFFVID 52
Query: 318 QDG 320
QD
Sbjct: 53 QDK 55
Score = 28.4 bits (64), Expect = 4.6
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 625 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 683
+ + + D V A + A E + +F+ +KAF K G + ++IK+ F
Sbjct: 2 AFSGILADADVAAALK--ACEAADSFN-------YKAFFAKVGLTAKSADDIKKAFFVID 52
Query: 684 QDG 686
QD
Sbjct: 53 QDK 55
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 30.0 bits (68), Expect = 5.1
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 20/111 (18%)
Query: 280 SLTFDN-------------ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHER 326
S TFDN + + + K + + + + DG +
Sbjct: 237 SKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKI 296
Query: 327 YGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEK-MLMEVEKDGPV 376
G + I G K T I KV EK P
Sbjct: 297 VG------QPATAIAEMAGVKVPADTKVLIGEGLGKVSYDDAFAHEKLSPT 341
Score = 30.0 bits (68), Expect = 5.1
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 20/111 (18%)
Query: 646 SLTFDN-------------ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHER 692
S TFDN + + + K + + + + DG +
Sbjct: 237 SKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKI 296
Query: 693 YGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEK-MLMEVEKDGPV 742
G + I G K T I KV EK P
Sbjct: 297 VG------QPATAIAEMAGVKVPADTKVLIGEGLGKVSYDDAFAHEKLSPT 341
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 28.0 bits (63), Expect = 5.4
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 259 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 317
S+TD ++ + A + + F+ + F G + ++K+ F +
Sbjct: 1 SITDILSAEDIAAALQECQDPDT--FE-------PQKFFQTSGLSKMSASQVKDIFRFID 51
Query: 318 QDG 320
D
Sbjct: 52 NDQ 54
Score = 28.0 bits (63), Expect = 5.4
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 625 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 683
S+TD ++ + A + + F+ + F G + ++K+ F +
Sbjct: 1 SITDILSAEDIAAALQECQDPDT--FE-------PQKFFQTSGLSKMSASQVKDIFRFID 51
Query: 684 QDG 686
D
Sbjct: 52 NDQ 54
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal
protein, nucleus, phosphoprotein, repressor, telomere;
HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Length = 168
Score = 29.0 bits (64), Expect = 5.7
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 224 TIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLA------- 276
+ VI +A L+Q + G+ LT D +V L
Sbjct: 49 KLHEVISGDYEPSQAEKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVN 108
Query: 277 ----IEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQD 319
+ G T D++ L++ +++ + ++ R +F++D
Sbjct: 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKD 155
Score = 29.0 bits (64), Expect = 5.7
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 590 TIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLA------- 642
+ VI +A L+Q + G+ LT D +V L
Sbjct: 49 KLHEVISGDYEPSQAEKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVN 108
Query: 643 ----IEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQD 685
+ G T D++ L++ +++ + ++ R +F++D
Sbjct: 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKD 155
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 29.8 bits (68), Expect = 5.9
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 229 IQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAI 277
+ R + ++ +F++ V L P+L RI D+ +AR D +
Sbjct: 14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLV 62
Score = 29.8 bits (68), Expect = 5.9
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 595 IQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAI 643
+ R + ++ +F++ V L P+L RI D+ +AR D +
Sbjct: 14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLV 62
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 28.0 bits (63), Expect = 6.2
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 292 FKAFIVKRGRQYANDEEIKERFEYFKQDG 320
+K+F G ++IK+ F QD
Sbjct: 27 YKSFFSTVGLSSKTPDQIKKVFGILDQDK 55
Score = 28.0 bits (63), Expect = 6.2
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 658 FKAFIVKRGRQYANDEEIKERFEYFKQDG 686
+K+F G ++IK+ F QD
Sbjct: 27 YKSFFSTVGLSSKTPDQIKKVFGILDQDK 55
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 29.1 bits (65), Expect = 6.5
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 19/129 (14%)
Query: 247 LLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENI-LETFKAFIVKRGRQYAN 305
+ G L L T R+ D D GS + + F F + +
Sbjct: 70 VYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLML-CYIYD 128
Query: 306 DEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEK 365
E+ F+ G+ + EF + + K A E
Sbjct: 129 FFELTVMFDEIDASGNMLVDE---EEF-----KRAVPKLEAW---------GAKVEDPAA 171
Query: 366 MLMEVEKDG 374
+ E++K+G
Sbjct: 172 LFKELDKNG 180
Score = 29.1 bits (65), Expect = 6.5
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 19/129 (14%)
Query: 613 LLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENI-LETFKAFIVKRGRQYAN 671
+ G L L T R+ D D GS + + F F + +
Sbjct: 70 VYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLML-CYIYD 128
Query: 672 DEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEK 731
E+ F+ G+ + EF + + K A E
Sbjct: 129 FFELTVMFDEIDASGNMLVDE---EEF-----KRAVPKLEAW---------GAKVEDPAA 171
Query: 732 MLMEVEKDG 740
+ E++K+G
Sbjct: 172 LFKELDKNG 180
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking,
activity, smase D, hydrolase; HET: EPE; 1.75A
{Loxosceles laeta} PDB: 2f9r_A*
Length = 285
Score = 29.3 bits (65), Expect = 6.5
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 276 AIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDR 335
A+E +TF T+ GR E + ++ + G +++ D
Sbjct: 30 ALEADVTFKGSVPTYTYHGTPCDFGRDCIRWEYFNVFLKTLRE-----YTTPGNAKYRDG 84
Query: 336 SPEEILC-KTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPD 378
+L KTG +++ A +++L +G
Sbjct: 85 FILFVLDLKTGSLSNDQVRP---AGENVAKELLQNYWNNGNNGG 125
Score = 29.3 bits (65), Expect = 6.5
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 642 AIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDR 701
A+E +TF T+ GR E + ++ + G +++ D
Sbjct: 30 ALEADVTFKGSVPTYTYHGTPCDFGRDCIRWEYFNVFLKTLRE-----YTTPGNAKYRDG 84
Query: 702 SPEEILC-KTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPD 744
+L KTG +++ A +++L +G
Sbjct: 85 FILFVLDLKTGSLSNDQVRP---AGENVAKELLQNYWNNGNNGG 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.433
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,371,992
Number of extensions: 1031931
Number of successful extensions: 3008
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2486
Number of HSP's successfully gapped: 233
Length of query: 1026
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 923
Effective length of database: 3,825,930
Effective search space: 3531333390
Effective search space used: 3531333390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.4 bits)