BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7461
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9E|A Chain A, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
pdb|2I9E|B Chain B, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
pdb|2I9E|C Chain C, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
pdb|2I9E|D Chain D, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
Length = 259
Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/145 (71%), Positives = 122/145 (84%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
M+RKF VGGNWKMNG+KK+I I+ FLK GPL+ EVVVGVPAIYLE + +P+++
Sbjct: 1 MARKFVVGGNWKMNGDKKQINEIIGFLKSGPLNQDTEVVVGVPAIYLELVRTCVPASIGV 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQNCYKVPKGAFTGE+SPAM+ DVG DWVILGHSERR +FGE D LIAEKV HALE+GL
Sbjct: 61 AAQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGL 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQ 145
V+ACIGE LEEREAG+TE VV++Q
Sbjct: 121 KVIACIGETLEEREAGKTEEVVFRQ 145
>pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
pdb|1MO0|B Chain B, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
Length = 275
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 116/149 (77%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
++RKF+VGGNWKMNG+ ++GIV FL + V+VVV PA YL YAK L + V
Sbjct: 21 LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 80
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQNCYKVPKGAFTGE+SPAM+ D+G++WVILGHSERR+VFGE D+LIAEK HALE G+
Sbjct: 81 AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 140
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
VV CIGEKLEEREAG T+ V ++Q+ +
Sbjct: 141 KVVFCIGEKLEEREAGHTKDVNFRQLQAI 169
>pdb|3TH6|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Rhipicephalus (Boophilus) Microplus.
pdb|3TH6|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Rhipicephalus (Boophilus) Microplus
Length = 249
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/145 (64%), Positives = 113/145 (77%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
+R+F VGGNWKM+G+K I I + LK LDP VEV+V PA YL+Y + LLP +VA A
Sbjct: 3 ARRFCVGGNWKMHGSKNSIRDICNTLKGASLDPNVEVIVACPAPYLDYCRSLLPPSVALA 62
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQNCYKV +GAFTGE+SP M+ D G WVILGHSERR+VF E D LI EK+ HALE+GLN
Sbjct: 63 AQNCYKVEQGAFTGEISPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGLN 122
Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
V+ACIGE LE+REAG+TE V ++QI
Sbjct: 123 VIACIGELLEDREAGRTEEVCFRQI 147
>pdb|1TPB|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble
pdb|1TPB|2 Chain 2, Offset Of A Catalytic Lesion By A Bound Water Soluble
Length = 247
Score = 192 bits (489), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1SW7|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant K174n, T175s, A176s
pdb|1SW7|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant K174n, T175s, A176s
Length = 248
Score = 192 bits (489), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 4 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 63
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 64 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 123
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 124 IACIGEKLDEREAGITEKVVFEQTKAI 150
>pdb|1TPH|1 Chain 1, 1.8 Angstroms Crystal Structure Of Wild Type Chicken
Triosephosphate Isomerase-Phosphoglycolohydroxamate
Complex
pdb|1TPH|2 Chain 2, 1.8 Angstroms Crystal Structure Of Wild Type Chicken
Triosephosphate Isomerase-Phosphoglycolohydroxamate
Complex
pdb|8TIM|A Chain A, Triose Phosphate Isomerase
pdb|8TIM|B Chain B, Triose Phosphate Isomerase
Length = 247
Score = 192 bits (489), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1SPQ|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SPQ|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 192 bits (489), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1SW3|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant T175v
pdb|1SW3|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant T175v
Length = 248
Score = 192 bits (489), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 4 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 63
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 64 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 123
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 124 IACIGEKLDEREAGITEKVVFEQTKAI 150
>pdb|1SSD|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSD|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 192 bits (488), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1SW0|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Hinge
Mutant K174l, T175w
pdb|1SW0|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Hinge
Mutant K174l, T175w
Length = 248
Score = 192 bits (488), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 4 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 63
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 64 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 123
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 124 IACIGEKLDEREAGITEKVVFEQTKAI 150
>pdb|1SQ7|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SQ7|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 192 bits (487), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1SU5|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SU5|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 192 bits (487), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1TPW|A Chain A, Triosephosphate Isomerase Drinks Water To Keep Healthy
pdb|1TPW|B Chain B, Triosephosphate Isomerase Drinks Water To Keep Healthy
Length = 247
Score = 190 bits (482), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 111/147 (75%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGH ERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHPERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1TPC|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble
pdb|1TPC|2 Chain 2, Offset Of A Catalytic Lesion By A Bound Water Soluble
Length = 247
Score = 190 bits (482), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 111/147 (75%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGH ERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHPERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1TPU|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
pdb|1TPU|B Chain B, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
Length = 247
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 112/147 (76%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILG+SERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGNSERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1TIM|A Chain A, Structure Of Triose Phosphate Isomerase From Chicken
Muscle
pdb|1TIM|B Chain B, Structure Of Triose Phosphate Isomerase From Chicken
Muscle
Length = 247
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 111/147 (75%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG +K + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGKRKSLGELIHTLDGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILGHSERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV+++ +
Sbjct: 123 IACIGEKLDEREAGITEKVVFQETKAI 149
>pdb|1TPV|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
pdb|1TPV|B Chain B, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
Length = 247
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 111/147 (75%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
RKF+VGGNWKMNG+KK + ++ L L EVV G P+IYL++A+ L + + AA
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QNCYKVPKGAFTGE+SPAM+ D+G WVILG+ ERR+VFGE D LI +KVAHAL GL V
Sbjct: 63 QNCYKVPKGAFTGEISPAMIKDIGAAWVILGNPERRHVFGESDELIGQKVAHALAEGLGV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGEKL+EREAG TE VV++Q +
Sbjct: 123 IACIGEKLDEREAGITEKVVFEQTKAI 149
>pdb|1R2R|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2R|B Chain B, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2R|C Chain C, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2R|D Chain D, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2S|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2S|B Chain B, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2S|C Chain C, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2S|D Chain D, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2T|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2T|B Chain B, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
Length = 248
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 104/144 (72%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
SRKF+VGGNWKMNG KK + ++ L + EVV P Y+++A+ L +A A
Sbjct: 3 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVA 62
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQNCYKV GAFTGE+SP M+ D G WV+LGHSERR+VFGE D LI +KVAHAL GL
Sbjct: 63 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 122
Query: 122 VVACIGEKLEEREAGQTEAVVYKQ 145
V+ACIGEKL+EREAG TE VV++Q
Sbjct: 123 VIACIGEKLDEREAGITEKVVFEQ 146
>pdb|1HTI|A Chain A, Crystal Structure Of Recombinant Human Triosephosphate
Isomerase At 2.8 Angstroms Resolution. Triosephosphate
Isomerase Related Human Genetic Disorders And Comparison
With The Trypanosomal Enzyme
pdb|1HTI|B Chain B, Crystal Structure Of Recombinant Human Triosephosphate
Isomerase At 2.8 Angstroms Resolution. Triosephosphate
Isomerase Related Human Genetic Disorders And Comparison
With The Trypanosomal Enzyme
Length = 248
Score = 175 bits (443), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 104/144 (72%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
SRKF+VGGNWKMNG K+ + ++ L + EVV P Y+++A+ L +A A
Sbjct: 3 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVA 62
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQNCYKV GAFTGE+SP M+ D G WV+LGHSERR+VFGE D LI +KVAHAL GL
Sbjct: 63 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLG 122
Query: 122 VVACIGEKLEEREAGQTEAVVYKQ 145
V+ACIGEKL+EREAG TE VV++Q
Sbjct: 123 VIACIGEKLDEREAGITEKVVFEQ 146
>pdb|1WYI|A Chain A, Human Triosephosphate Isomerase Of New Crystal Form
pdb|1WYI|B Chain B, Human Triosephosphate Isomerase Of New Crystal Form
pdb|2JK2|A Chain A, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Crystal Structure Of The Wild Type Enzyme.
pdb|2JK2|B Chain B, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Crystal Structure Of The Wild Type Enzyme
Length = 250
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 104/144 (72%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
SRKF+VGGNWKMNG K+ + ++ L + EVV P Y+++A+ L +A A
Sbjct: 5 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVA 64
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQNCYKV GAFTGE+SP M+ D G WV+LGHSERR+VFGE D LI +KVAHAL GL
Sbjct: 65 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLG 124
Query: 122 VVACIGEKLEEREAGQTEAVVYKQ 145
V+ACIGEKL+EREAG TE VV++Q
Sbjct: 125 VIACIGEKLDEREAGITEKVVFEQ 148
>pdb|2VOM|A Chain A, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Mutation E104d And Correlation To Solvent
Perturbation.
pdb|2VOM|B Chain B, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Mutation E104d And Correlation To Solvent
Perturbation.
pdb|2VOM|C Chain C, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Mutation E104d And Correlation To Solvent
Perturbation.
pdb|2VOM|D Chain D, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Mutation E104d And Correlation To Solvent
Perturbation
Length = 250
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/144 (57%), Positives = 104/144 (72%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
SRKF+VGGNWKMNG K+ + ++ L + EVV P Y+++A+ L +A A
Sbjct: 5 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVA 64
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQNCYKV GAFTGE+SP M+ D G WV+LGHSERR+VFG+ D LI +KVAHAL GL
Sbjct: 65 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGDSDELIGQKVAHALAEGLG 124
Query: 122 VVACIGEKLEEREAGQTEAVVYKQ 145
V+ACIGEKL+EREAG TE VV++Q
Sbjct: 125 VIACIGEKLDEREAGITEKVVFEQ 148
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant)
pdb|1I45|B Chain B, Yeast Triosephosphate Isomerase (Mutant)
Length = 248
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVA 59
M+R F+VGGN+K+NG+K+ I+ IV+ L + VEVV+ PA YL+Y+ L+ V
Sbjct: 1 MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVT 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
AQN Y GAFTGE S + DVG +VILGHSERR+ F E D IA+K AL G
Sbjct: 61 VGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQICCV 149
+ V+ CIGE LEE++AG+T VV +Q+ V
Sbjct: 121 VGVILCIGETLEEKKAGKTLDVVERQLNAV 150
>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|7TIM|A Chain A, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
pdb|7TIM|B Chain B, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
Length = 247
Score = 137 bits (344), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R F+VGGN+K+NG+K+ I+ IV+ L + VEVV+ PA YL+Y+ L+ V
Sbjct: 1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTV 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN Y GAFTGE S + DVG WVILGHSERR+ F E D IA+K AL G+
Sbjct: 61 GAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGV 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
V+ CIGE LEE++AG+T VV +Q+ V
Sbjct: 121 GVILCIGETLEEKKAGKTLDVVERQLNAV 149
>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
pdb|4FF7|B Chain B, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
Length = 248
Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVA 59
M+R F+VGGN+K+NG+K+ I+ IV+ L + VEVV+ PA YL+Y+ L+ V
Sbjct: 1 MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVT 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
AQN Y GAFTGE S + DVG WVILGHSERR+ F E D IA+K AL G
Sbjct: 61 VGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQG 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQICCV 149
+ V+ IGE LEE++AG+T VV +Q+ V
Sbjct: 121 VGVILSIGETLEEKKAGKTLDVVERQLNAV 150
>pdb|1NF0|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NF0|B Chain B, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|B Chain B, Triosephosphate Isomerase In Complex With Dhap
Length = 247
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R F+VGGN+K+NG+K+ I+ IV+ L + VEVV+ PA YL+Y+ L+ V
Sbjct: 1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTV 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN Y GAFTGE S + DVG +VILGHSERR+ F E D IA+K AL G+
Sbjct: 61 GAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGV 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
V+ CIGE LEE++AG+T VV +Q+ V
Sbjct: 121 GVILCIGETLEEKKAGKTLDVVERQLNAV 149
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
Length = 247
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 95/149 (63%), Gaps = 1/149 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R F+VGGN+K+NG+K+ I+ IV+ L + VEVV+ PA YL+Y+ L+ V
Sbjct: 1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTV 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN Y GAFTGE S + DVG WVILG SERR+ F E D IA+K AL G+
Sbjct: 61 GAQNAYLKASGAFTGENSVDQIKDVGAKWVILGQSERRSYFHEDDKFIADKTKFALGQGV 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
V+ CIGE LEE++AG+T VV +Q+ V
Sbjct: 121 GVILCIGETLEEKKAGKTLDVVERQLNAV 149
>pdb|3QST|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate
Isomerase Tvag_096350 Gene (Val-45 Variant)
Length = 255
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 3 RKFWVGGNWKMNGNK-KEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
R F+VGGNWK N +E E +V+ L ++ VEVVV P ++L + L + +
Sbjct: 5 RTFFVGGNWKANPKTVQEAEKLVEMLNGAKVEGNVEVVVAAPFVFLPTLQQKLRKDWKVS 64
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
A+N + P GAFTGE++ M+ GI+W ILGHSERR++ E D +A K ALE G+
Sbjct: 65 AENVFTKPNGAFTGEVTVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENGMK 124
Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
++ C GE L EREAG+ V QI
Sbjct: 125 IIYCCGEHLSEREAGKASEFVSAQI 149
>pdb|3QSR|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate
Isomerase Tvag_497370 Gene (Ile-45 Variant)
Length = 255
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 3 RKFWVGGNWKMNGNK-KEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
R F+VGGNWK N +E E +++ L ++ VEVVV P I+L + L + +
Sbjct: 5 RTFFVGGNWKANPKTVEEAEKLIEMLNGAKVEGNVEVVVAAPFIFLPTLQQKLRKDWKVS 64
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
A+N + P GAFTGE++ M+ GI+W ILGHSERR++ E D +A K ALE G+
Sbjct: 65 AENVFTKPNGAFTGEVTVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENGMK 124
Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
++ C GE L EREAG+ V QI
Sbjct: 125 IIYCCGEHLSEREAGKASEFVSAQI 149
>pdb|2VFD|A Chain A, Crystal Structure Of The F96s Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFD|B Chain B, Crystal Structure Of The F96s Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFE|A Chain A, Crystal Structure Of F96s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase With 3-Phosphoglycerate Bound
At The Dimer Interface
pdb|2VFE|B Chain B, Crystal Structure Of F96s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase With 3-Phosphoglycerate Bound
At The Dimer Interface
Length = 248
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GHSERR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHSERRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V C GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVCFGESLEQREQNKTIEVITKQV 147
>pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Entamoeba Histolytica
pdb|1M6J|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Entamoeba Histolytica
Length = 261
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 92/154 (59%), Gaps = 9/154 (5%)
Query: 4 KFWVGGNWKMNGNKKEIEGIVDFLK---KGPLDPKVEVVVGVPAIYLEYAKCLLP----- 55
KF VGGNWK NG IE + + L KVEV+VGVP IY+ + +L
Sbjct: 5 KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANG 64
Query: 56 SNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHA 115
+N+ +A+N + GA+TGE+ MLVD + +VILGHSERR +F E + +AEKV A
Sbjct: 65 ANILVSAENAW-TKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVA 123
Query: 116 LETGLNVVACIGEKLEEREAGQTEAVVYKQICCV 149
++ GL V+ACIGE +R A QTE VV Q+ +
Sbjct: 124 IDAGLKVIACIGETEAQRIANQTEEVVAAQLKAI 157
>pdb|1B9B|A Chain A, Triosephosphate Isomerase Of Thermotoga Maritima
pdb|1B9B|B Chain B, Triosephosphate Isomerase Of Thermotoga Maritima
Length = 255
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPK-VEVVVGVPAIYL-EYAKCLLPSNV 58
++RK + GNWKM+ E + V L D K E+VV P L E + L N+
Sbjct: 1 ITRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNI 60
Query: 59 APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AQN + +GAFTGE+SP ML ++G+++VI+GHSERR +F E D I KV LE
Sbjct: 61 KLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEK 120
Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
G+ + C+GE LEERE G T VV KQ+
Sbjct: 121 GMTPILCVGETLEEREKGLTFCVVEKQV 148
>pdb|2VFF|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFF|B Chain B, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFG|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|B Chain B, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|C Chain C, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|D Chain D, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
Length = 248
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH ERR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHHERRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V C GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVCFGESLEQREQNKTIEVITKQV 147
>pdb|1VGA|A Chain A, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|B Chain B, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|C Chain C, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|D Chain D, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1WOA|A Chain A, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|B Chain B, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|C Chain C, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|D Chain D, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOB|A Chain A, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase, W168f, Complexed To Sulfate
pdb|1WOB|B Chain B, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase, W168f, Complexed To Sulfate
pdb|1WOB|C Chain C, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase, W168f, Complexed To Sulfate
pdb|1WOB|D Chain D, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase, W168f, Complexed To Sulfate
Length = 248
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH ERR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V C GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVCFGESLEQREQNKTIEVITKQV 147
>pdb|1YDV|A Chain A, Triosephosphate Isomerase (Tim)
pdb|1YDV|B Chain B, Triosephosphate Isomerase (Tim)
pdb|1M7O|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog 3-Phosphoglycerate (3pg)
pdb|1M7O|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog 3-Phosphoglycerate (3pg)
pdb|1M7P|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog Glycerol-3-Phosphate (G3p).
pdb|1M7P|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog Glycerol-3-Phosphate (G3p).
pdb|1LYX|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)-
Phosphoglycolate Complex
pdb|1LZO|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|C Chain C, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|D Chain D, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1O5X|A Chain A, Plasmodium Falciparum Tim Complexed To 2-Phosphoglycerate
pdb|1O5X|B Chain B, Plasmodium Falciparum Tim Complexed To 2-Phosphoglycerate
pdb|2VFI|A Chain A, Crystal Structure Of The Plasmodium Falciparum
Triosephosphate Isomerase In The Loop Closed State With
3- Phosphoglycerate Bound At The Active Site And
Interface
pdb|2VFI|B Chain B, Crystal Structure Of The Plasmodium Falciparum
Triosephosphate Isomerase In The Loop Closed State With
3- Phosphoglycerate Bound At The Active Site And
Interface
Length = 248
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH ERR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V C GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVCFGESLEQREQNKTIEVITKQV 147
>pdb|2BTM|A Chain A, Does The His12-Lys13 Pair Play A Role In The Adaptation Of
Thermophilic Tims To High Temperatures?
pdb|2BTM|B Chain B, Does The His12-Lys13 Pair Play A Role In The Adaptation Of
Thermophilic Tims To High Temperatures?
Length = 252
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 89/147 (60%), Gaps = 4/147 (2%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEV--VVGVPAIYLE-YAKCLLPSNVA 59
RK + GNWKMNG E V+ +K G + P EV VV P ++L+ + +++
Sbjct: 1 RKPIIAGNWKMNGTLAEAVQFVEDVK-GHVPPADEVISVVCAPFLFLDRLVQAADGTDLK 59
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
AQ + +GA+TGE+SP ML D+G+ +VILGHSERR +F E D + +KV A G
Sbjct: 60 IGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRG 119
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L + C GE LEEREAGQT AVV Q+
Sbjct: 120 LIPIICCGESLEEREAGQTNAVVASQV 146
>pdb|2OMA|A Chain A, Crystallographic Analysis Of A Chemically Modified
Triosephosphate Isomerase From Trypanosoma Cruzi With
Dithiobenzylamine (dtba)
pdb|2OMA|B Chain B, Crystallographic Analysis Of A Chemically Modified
Triosephosphate Isomerase From Trypanosoma Cruzi With
Dithiobenzylamine (dtba)
Length = 250
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK NG++ + +++ L D V+ VV +++ K L + AAQN
Sbjct: 9 AANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAI 68
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
GAFTGE+S +L D GI WV+LGHSERR +GE + ++AEKVA A G +V+ C+
Sbjct: 69 -TRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQAXAAGFHVIVCV 127
Query: 127 GEKLEEREAGQTEAVVYKQICCV 149
GE EEREAG+T AVV Q+ V
Sbjct: 128 GETNEEREAGRTAAVVLTQLAAV 150
>pdb|2VFH|A Chain A, Crystal Structure Of The F96w Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase Complexed With 3-
Phosphoglycerate
pdb|2VFH|B Chain B, Crystal Structure Of The F96w Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase Complexed With 3-
Phosphoglycerate
Length = 248
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH ERR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHWERRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V C GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVCFGESLEQREQNKTIEVITKQV 147
>pdb|3PSW|A Chain A, Structure Of E97q Mutant Of Tim From Plasmodium Falciparum
pdb|3PSW|B Chain B, Structure Of E97q Mutant Of Tim From Plasmodium Falciparum
Length = 248
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH +RR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFQRRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V C GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVCFGESLEQREQNKTIEVITKQV 147
>pdb|3PSV|A Chain A, Structure Of E97d Mutant Of Tim From Plasmodium Falciparum
pdb|3PSV|B Chain B, Structure Of E97d Mutant Of Tim From Plasmodium Falciparum
Length = 248
Score = 112 bits (281), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH +RR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFDRRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V C GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVCFGESLEQREQNKTIEVITKQV 147
>pdb|1CI1|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Trypanosoma Cruzi In Hexane
pdb|1CI1|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Trypanosoma Cruzi In Hexane
pdb|1SUX|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase From Trypanosoma Cruzi And
3-(2- Benzothiazolylthio)-1-propanesulfonic Acid
pdb|1SUX|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase From Trypanosoma Cruzi And
3-(2- Benzothiazolylthio)-1-propanesulfonic Acid
Length = 251
Score = 112 bits (281), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK NG++ + +++ L D V+ VV +++ K L + AAQN
Sbjct: 10 AANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAI 69
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
GAFTGE+S +L D GI WV+LGHSERR +GE + ++AEKVA A G +V+ C+
Sbjct: 70 -TRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCV 128
Query: 127 GEKLEEREAGQTEAVVYKQICCV 149
GE EEREAG+T AVV Q+ V
Sbjct: 129 GETNEEREAGRTAAVVLTQLAAV 151
>pdb|1TCD|A Chain A, Trypanosoma Cruzi Triosephosphate Isomerase
pdb|1TCD|B Chain B, Trypanosoma Cruzi Triosephosphate Isomerase
Length = 249
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK NG++ + +++ L D V+ VV +++ K L + AAQN
Sbjct: 8 AANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAI 67
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
GAFTGE+S +L D GI WV+LGHSERR +GE + ++AEKVA A G +V+ C+
Sbjct: 68 -TRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCV 126
Query: 127 GEKLEEREAGQTEAVVYKQICCV 149
GE EEREAG+T AVV Q+ V
Sbjct: 127 GETNEEREAGRTAAVVLTQLAAV 149
>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
pdb|3KRS|B Chain B, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
Length = 271
Score = 112 bits (280), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLL----PS 56
MSRK++VGGN+K NG K+ ++ ++D K+ EV V ++++ K P
Sbjct: 22 MSRKYFVGGNFKCNGTKESLKTLIDSFKQVE-SSNSEVYVFPTSLHISLVKEFFGNDHPG 80
Query: 57 NVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHAL 116
+QN GAFTGE+S ML D+ +D ++GHSERR + E D ++ KV L
Sbjct: 81 VFKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGL 140
Query: 117 ETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
E GL +V CIGE L ERE G+T V+ KQ+
Sbjct: 141 ENGLKIVLCIGESLSERETGKTNDVIQKQL 170
>pdb|1QDS|A Chain A, Superstable E65q Mutant Of Leishmania Mexicana
Triosephosphate Isomerase (Tim)
pdb|1IF2|A Chain A, X-Ray Structure Of Leishmania Mexicana Triosephosphate
Isomerase Complexed With Ipp
pdb|1N55|A Chain A, 0.83a Resolution Structure Of The E65q Mutant Of
Leishmania Mexicana Triosephosphate Isomerase Complexed
With 2-Phosphoglycolate
pdb|2VXN|A Chain A, E65q-Tim Complexed With Phosphoglycolohydroxamate At 0.82
A Resolution
pdb|2Y61|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
S-Glycidol Phosphate
pdb|2Y62|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
R-Glycidol Phosphate
pdb|2Y63|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
Bromohydroxyacetone Phosphate
Length = 251
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIY--LEYAKCLLPSNVAPAAQNC 65
NWK NG IE +V + + V+ VV ++ L AK P V +AQN
Sbjct: 10 AANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVI-SAQNA 68
Query: 66 YKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVAC 125
GAFTGE+S +L D+G+ WVILGHSERR +GE D ++A+KV+ A + G V+AC
Sbjct: 69 I-AKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIAC 127
Query: 126 IGEKLEEREAGQTEAVVYKQICCV 149
IGE L++REA QT VV Q +
Sbjct: 128 IGETLQQREANQTAKVVLSQTSAI 151
>pdb|1AMK|A Chain A, Leishmania Mexicana Triose Phosphate Isomerase
Length = 251
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIY--LEYAKCLLPSNVAPAAQNC 65
NWK NG IE +V + + V+ VV ++ L AK P V A
Sbjct: 10 AANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAENAI 69
Query: 66 YKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVAC 125
K GAFTGE+S +L D+G+ WVILGHSERR +GE D ++A+KV+ A + G V+AC
Sbjct: 70 AK--SGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIAC 127
Query: 126 IGEKLEEREAGQTEAVVYKQICCV 149
IGE L++REA QT VV Q +
Sbjct: 128 IGETLQQREANQTAKVVLSQTSAI 151
>pdb|3PVF|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase Complexed With Pga
pdb|3PY2|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
pdb|3PY2|B Chain B, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
Length = 248
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH ERR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVSFGESLEQREQNKTIEVITKQV 147
>pdb|3PWA|A Chain A, Structure Of C126a Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
pdb|3PWA|B Chain B, Structure Of C126a Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
Length = 248
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH ERR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVAFGESLEQREQNKTIEVITKQV 147
>pdb|1BTM|A Chain A, Triosephosphate Isomerase (Tim) Complexed With 2-
Phosphoglycolic Acid
pdb|1BTM|B Chain B, Triosephosphate Isomerase (Tim) Complexed With 2-
Phosphoglycolic Acid
Length = 252
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 90/149 (60%), Gaps = 8/149 (5%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLK--KGPLDPKVEV--VVGVPAIYLE-YAKCLLPSN 57
RK + GNWKM+ K + V F++ KG + P EV VV P ++L+ + ++
Sbjct: 1 RKPIIAGNWKMH---KTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTD 57
Query: 58 VAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALE 117
+ AQ + +GA+TGE+SP ML D+G+ +VILGHSERR +F E D + +KV A
Sbjct: 58 LKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFT 117
Query: 118 TGLNVVACIGEKLEEREAGQTEAVVYKQI 146
GL + C GE LEEREAGQT AVV Q+
Sbjct: 118 RGLIPIICCGESLEEREAGQTNAVVASQV 146
>pdb|3UWU|A Chain A, Crystal Structure Of Staphylococcus Aureus Triosephosphate
Isomerase Complexed With Glycerol-3-Phosphate
pdb|3UWU|B Chain B, Crystal Structure Of Staphylococcus Aureus Triosephosphate
Isomerase Complexed With Glycerol-3-Phosphate
pdb|3UWV|A Chain A, Crystal Structure Of Staphylococcus Aureus Triosephosphate
Isomerase Complexed With 2-Phosphoglyceric Acid
pdb|3UWV|B Chain B, Crystal Structure Of Staphylococcus Aureus Triosephosphate
Isomerase Complexed With 2-Phosphoglyceric Acid
pdb|3UWW|A Chain A, Crystal Structure Of Staphylococcus Aureus Triosephosphate
Isomerase Complexed With 3-Phosphoglyceric Acid
pdb|3UWW|B Chain B, Crystal Structure Of Staphylococcus Aureus Triosephosphate
Isomerase Complexed With 3-Phosphoglyceric Acid
pdb|3UWY|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Methicillin Resistant Staphylococcus Aureus At 2.4
Angstrom Resolution
pdb|3UWY|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Methicillin Resistant Staphylococcus Aureus At 2.4
Angstrom Resolution
pdb|3UWZ|A Chain A, Crystal Structure Of Staphylococcus Aureus Triosephosphate
Isomerase Complexed With Glycerol-2-Phosphate
pdb|3UWZ|B Chain B, Crystal Structure Of Staphylococcus Aureus Triosephosphate
Isomerase Complexed With Glycerol-2-Phosphate
Length = 261
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA- 61
R + GNWKMN +E + V+ L P +VE V+ PAI L+ + A
Sbjct: 10 RTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGL 69
Query: 62 ---AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AQN Y GAFTGE SP L D+G+ +V++GHSERR +F E D I +K +
Sbjct: 70 EIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKH 129
Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
G+ + C+GE EERE+G+ VV +Q+
Sbjct: 130 GMTPIICVGETDEERESGKANDVVGEQV 157
>pdb|3M9Y|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Methicillin Resistant Staphylococcus Aureus At 1.9
Angstrom Resolution
pdb|3M9Y|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Methicillin Resistant Staphylococcus Aureus At 1.9
Angstrom Resolution
Length = 254
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA- 61
R + GNWKMN +E + V+ L P +VE V+ PAI L+ + A
Sbjct: 3 RTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGL 62
Query: 62 ---AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AQN Y GAFTGE SP L D+G+ +V++GHSERR +F E D I +K +
Sbjct: 63 EIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKH 122
Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
G+ + C+GE EERE+G+ VV +Q+
Sbjct: 123 GMTPIICVGETDEERESGKANDVVGEQV 150
>pdb|3Q37|A Chain A, Identification Of Amino Acids That Account For Long-Range
Interactions In Proteins Using Two Triosephosphate
Isomerases From Pathogenic Trypanosomes.
pdb|3Q37|B Chain B, Identification Of Amino Acids That Account For Long-Range
Interactions In Proteins Using Two Triosephosphate
Isomerases From Pathogenic Trypanosomes.
pdb|3Q37|C Chain C, Identification Of Amino Acids That Account For Long-Range
Interactions In Proteins Using Two Triosephosphate
Isomerases From Pathogenic Trypanosomes.
pdb|3Q37|D Chain D, Identification Of Amino Acids That Account For Long-Range
Interactions In Proteins Using Two Triosephosphate
Isomerases From Pathogenic Trypanosomes
Length = 251
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK NG+++ + ++D ++ V+ VV +++ K L + AAQN
Sbjct: 10 AANWKCNGSQQSLSELIDLFNSTSINHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAI 69
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
GAFTGE+S +L D GI WV+LGHSERR +GE + ++A+KVA A+ +G +V+ C+
Sbjct: 70 -TRSGAFTGEVSLQILKDYGISWVVLGHSERRAYYGETNEIVADKVAAAVASGFHVIVCV 128
Query: 127 GEKLEEREAGQTEAVVYKQICCV 149
GE EEREAG+T AVV Q+ V
Sbjct: 129 GETNEEREAGRTAAVVLTQLAAV 151
>pdb|1TRE|A Chain A, The Structure Of Triosephosphate Isomerase From
Escherichia Coli Determined At 2.6 Angstrom Resolution
pdb|1TRE|B Chain B, The Structure Of Triosephosphate Isomerase From
Escherichia Coli Determined At 2.6 Angstrom Resolution
Length = 255
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLP-SNVAP 60
R V GNWK+NG++ + +V L+K V + P +Y++ AK S++
Sbjct: 2 RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN GAFTGE S AML D+G ++I+GHSERR E D LIA+K A E GL
Sbjct: 62 GAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGL 121
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
V CIGE E EAG+TE V +QI V
Sbjct: 122 TPVLCIGETEAENEAGKTEEVCARQIDAV 150
>pdb|1TMH|A Chain A, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|B Chain B, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|C Chain C, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|D Chain D, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
Length = 254
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLP-SNVAP 60
R V GNWK+NG++ + +V L+K V + P +Y++ AK S++
Sbjct: 2 RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN GAFTGE S AML D+G ++I+GHSERR E D LIA+K A E GL
Sbjct: 62 GAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGL 121
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
V CIGE E EAG+TE V +QI V
Sbjct: 122 TPVLCIGETEAENEAGKTEEVCARQIDAV 150
>pdb|4IOT|A Chain A, High-resolution Structure Of Triosephosphate Isomerase
From E. Coli
pdb|4IOT|B Chain B, High-resolution Structure Of Triosephosphate Isomerase
From E. Coli
Length = 255
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLP-SNVAP 60
R V GNWK+NG++ + +V L+K V + P +Y++ AK S++
Sbjct: 2 RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN GAFTGE S AML D+G ++I+GHSERR E D LIA+K A E GL
Sbjct: 62 GAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGL 121
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
V CIGE E EAG+TE V +QI V
Sbjct: 122 TPVLCIGETEAENEAGKTEEVCARQIDAV 150
>pdb|3PF3|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate
Isomerase From Giardia Lamblia Derivatized With Mmts
Length = 257
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R+ ++GGN+K NG+ I+ V + + V+VV+ A++L A S +
Sbjct: 3 ARRPFIGGNFKXNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI 62
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQN Y GA+TGE S ML D+G+ VI+GHSERR + GE D A+K ALE G+
Sbjct: 63 AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V+ C+GE L+ER+A +T V Q+
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQL 148
>pdb|2J24|A Chain A, The Functional Role Of The Conserved Active Site Proline
Of Triosephosphate Isomerase
pdb|2J24|B Chain B, The Functional Role Of The Conserved Active Site Proline
Of Triosephosphate Isomerase
pdb|2J27|A Chain A, The Functional Role Of The Conserved Active Site Proline
Of Triosephosphate Isomerase
pdb|2J27|B Chain B, The Functional Role Of The Conserved Active Site Proline
Of Triosephosphate Isomerase
Length = 250
Score = 102 bits (254), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-A 69
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
GAFTGE+S +L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 70 KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 129
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 130 TLQERESGRTAVVVLTQ 146
>pdb|2YC6|A Chain A, Crystal Structure Of A Triple Mutant (A198v, C202a And
C222n) Of Triosephosphate Isomerase From Giardia Lamblia
Complexed With 2-Phosphoglycolic Acid
Length = 257
Score = 102 bits (253), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R+ ++GGN+K NG+ I+ V + + V+VV+ A++L A S +
Sbjct: 3 ARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI 62
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQN Y GA+TGE S ML D+G+ VI+GHSERR + GE D A+K ALE G+
Sbjct: 63 AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V+ C+GE L+ER+A +T V Q+
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQL 148
>pdb|2DP3|A Chain A, Crystal Structure Of A Double Mutant (C202aA198V) OF
TRIOSEPHOSPHATE Isomerase From Giardia Lamblia
Length = 257
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R+ ++GGN+K NG+ I+ V + + V+VV+ A++L A S +
Sbjct: 3 ARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI 62
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQN Y GA+TGE S ML D+G+ VI+GHSERR + GE D A+K ALE G+
Sbjct: 63 AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V+ C+GE L+ER+A +T V Q+
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQL 148
>pdb|2YC7|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate
Isomerase From Giardia Lamblia Complexed With
2-Phosphoglycolic Acid
Length = 257
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R+ ++GGN+K NG+ I+ V + + V+VV+ A++L A S +
Sbjct: 3 ARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI 62
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQN Y GA+TGE S ML D+G+ VI+GHSERR + GE D A+K ALE G+
Sbjct: 63 AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V+ C+GE L+ER+A +T V Q+
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQL 148
>pdb|4TIM|A Chain A, Crystallographic And Molecular Modeling Studies On
Trypanosomal Triosephosphate Isomerase: A Critical
Assessment Of The Predicted And Observed Structures Of
The Complex With 2-Phosphoglycerate
pdb|4TIM|B Chain B, Crystallographic And Molecular Modeling Studies On
Trypanosomal Triosephosphate Isomerase: A Critical
Assessment Of The Predicted And Observed Structures Of
The Complex With 2-Phosphoglycerate
pdb|5TIM|A Chain A, Refined 1.83 Angstroms Structure Of Trypanosomal
Triosephosphate Isomerase, Crystallized In The Presence
Of 2.4 M-Ammonium Sulphate. A Comparison With The
Structure Of The Trypanosomal Triosephosphate
Isomerase-Glycerol-3- Phosphate Complex
pdb|5TIM|B Chain B, Refined 1.83 Angstroms Structure Of Trypanosomal
Triosephosphate Isomerase, Crystallized In The Presence
Of 2.4 M-Ammonium Sulphate. A Comparison With The
Structure Of The Trypanosomal Triosephosphate
Isomerase-Glycerol-3- Phosphate Complex
pdb|6TIM|A Chain A, The Adaptability Of The Active Site Of Trypanosomal
Triosephosphate Isomerase As Observed In The Crystal
Structures Of Three Different Complexes
pdb|6TIM|B Chain B, The Adaptability Of The Active Site Of Trypanosomal
Triosephosphate Isomerase As Observed In The Crystal
Structures Of Three Different Complexes
pdb|1TRD|A Chain A, The Influence Of Crystal Packing On Crystallographic
Binding Studies: A New Crystal Form Of Trypanosomal Tim
pdb|1TRD|B Chain B, The Influence Of Crystal Packing On Crystallographic
Binding Studies: A New Crystal Form Of Trypanosomal Tim
pdb|1TPD|A Chain A, Structures Of The "open" And "closed" State Of
Trypanosomal Triosephosphate Isomerase, As Observed In A
New Crystal Form: Implications For The Reaction
Mechanism
pdb|1TPD|B Chain B, Structures Of The "open" And "closed" State Of
Trypanosomal Triosephosphate Isomerase, As Observed In A
New Crystal Form: Implications For The Reaction
Mechanism
pdb|1TPF|A Chain A, Comparison Of The Structures And The Crystal Contacts Of
Trypanosomal Triosephosphate Isomerase In Four Different
Crystal Forms
pdb|1TPF|B Chain B, Comparison Of The Structures And The Crystal Contacts Of
Trypanosomal Triosephosphate Isomerase In Four Different
Crystal Forms
pdb|1AG1|O Chain O, Monohydrogen Phosphate Binding To Trypanosomal
Triosephosphate Isomerase
pdb|1AG1|T Chain T, Monohydrogen Phosphate Binding To Trypanosomal
Triosephosphate Isomerase
pdb|1IIG|A Chain A, Structure Of Trypanosoma Brucei Brucei Triosephosphate
Isomerase Complexed With 3-Phosphonopropionate
pdb|1IIG|B Chain B, Structure Of Trypanosoma Brucei Brucei Triosephosphate
Isomerase Complexed With 3-Phosphonopropionate
pdb|1IIH|A Chain A, Structure Of Trypanosoma Brucei Brucei Triosephosphate
Isomerase Complexed With 3-Phosphoglycerate
pdb|1IIH|B Chain B, Structure Of Trypanosoma Brucei Brucei Triosephosphate
Isomerase Complexed With 3-Phosphoglycerate
pdb|2V5L|A Chain A, Structures Of The Open And Closed State Of Trypanosomal
Triosephosphate Isomerase: As Observed In A New Crystal
Form: Implications For The Reaction Mechanism
pdb|2V5L|B Chain B, Structures Of The Open And Closed State Of Trypanosomal
Triosephosphate Isomerase: As Observed In A New Crystal
Form: Implications For The Reaction Mechanism
Length = 250
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-A 69
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
GAFTGE+S +L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 70 KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 129
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 130 TLQERESGRTAVVVLTQ 146
>pdb|2V0T|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V0T|B Chain B, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V0T|C Chain C, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V0T|D Chain D, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V0T|E Chain E, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V0T|F Chain F, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V0T|G Chain G, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V0T|H Chain H, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V2C|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
Length = 250
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-A 69
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
GAFTGE+S +L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 70 KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 129
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 130 TLQERESGRTAVVVLTQ 146
>pdb|2YC8|A Chain A, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|B Chain B, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|C Chain C, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|D Chain D, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|E Chain E, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|F Chain F, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|G Chain G, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|H Chain H, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|I Chain I, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|J Chain J, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|K Chain K, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|L Chain L, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|M Chain M, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|N Chain N, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|O Chain O, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|P Chain P, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|Q Chain Q, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|R Chain R, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|S Chain S, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|T Chain T, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia
Length = 255
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R+ ++GGN+K NG+ I+ V + + V+VV+ A++L A S +
Sbjct: 3 ARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI 62
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQN Y GA+TGE S ML D+G+ VI+GHSERR + GE D A+K ALE G+
Sbjct: 63 AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V+ C+GE L+ER+A +T V Q+
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQL 148
>pdb|1KV5|A Chain A, Structure Of Trypanosoma Brucei Brucei Tim With The
Salt-Bridge- Forming Residue Arg191 Mutated To Ser
pdb|1KV5|B Chain B, Structure Of Trypanosoma Brucei Brucei Tim With The
Salt-Bridge- Forming Residue Arg191 Mutated To Ser
Length = 250
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-A 69
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
GAFTGE+S +L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 70 KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 129
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 130 TLQERESGRTAVVVLTQ 146
>pdb|3TIM|A Chain A, The Crystal Structure Of The "open" And The "closed"
Conformation Of The Flexible Loop Of Trypanosomal
Triosephosphate Isomerase
pdb|3TIM|B Chain B, The Crystal Structure Of The "open" And The "closed"
Conformation Of The Flexible Loop Of Trypanosomal
Triosephosphate Isomerase
pdb|1TSI|A Chain A, Structure Of The Complex Between Trypanosomal
Triosephosphate Isomerase And N-Hydroxy-4-Phosphono-
Butanamide: Binding At The Active Site Despite An "open"
Flexible Loop
pdb|1TSI|B Chain B, Structure Of The Complex Between Trypanosomal
Triosephosphate Isomerase And N-Hydroxy-4-Phosphono-
Butanamide: Binding At The Active Site Despite An "open"
Flexible Loop
pdb|1TPE| Chain , Triosephosphate Isomerase (E.C.5.3.1.1)
pdb|1TPE|A Chain A, Comparison Of The Structures And The Crystal Contacts Of
Trypanosomal Triosephosphate Isomerase In Four Different
Crystal Forms
Length = 250
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-A 69
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
GAFTGE+S +L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 70 KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 129
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 130 TLQERESGRTAVVVLTQ 146
>pdb|1AW1|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus Complexed With
2-Phosphoglycolate
pdb|1AW1|B Chain B, Triosephosphate Isomerase Of Vibrio Marinus Complexed With
2-Phosphoglycolate
pdb|1AW1|D Chain D, Triosephosphate Isomerase Of Vibrio Marinus Complexed With
2-Phosphoglycolate
pdb|1AW1|E Chain E, Triosephosphate Isomerase Of Vibrio Marinus Complexed With
2-Phosphoglycolate
pdb|1AW1|G Chain G, Triosephosphate Isomerase Of Vibrio Marinus Complexed With
2-Phosphoglycolate
pdb|1AW1|H Chain H, Triosephosphate Isomerase Of Vibrio Marinus Complexed With
2-Phosphoglycolate
pdb|1AW1|J Chain J, Triosephosphate Isomerase Of Vibrio Marinus Complexed With
2-Phosphoglycolate
pdb|1AW1|K Chain K, Triosephosphate Isomerase Of Vibrio Marinus Complexed With
2-Phosphoglycolate
pdb|1AW2|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|B Chain B, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|D Chain D, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|E Chain E, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|G Chain G, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|H Chain H, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|J Chain J, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|K Chain K, Triosephosphate Isomerase Of Vibrio Marinus
Length = 256
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 88/156 (56%), Gaps = 14/156 (8%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGV------PAIYLEYAKCLLP- 55
R V GNWK+NG+K E +VD L L+ ++E V GV PA++++ A+ L
Sbjct: 2 RHPVVMGNWKLNGSK---EMVVDLLNG--LNAELEGVTGVDVAVAPPALFVDLAERTLTE 56
Query: 56 --SNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA 113
S + AQN GAFTG++SPAML + G +I+GHSERR E D +A+K A
Sbjct: 57 AGSAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFA 116
Query: 114 HALETGLNVVACIGEKLEEREAGQTEAVVYKQICCV 149
E GL V CIGE + EAG+T AV +Q+ V
Sbjct: 117 FLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAV 152
>pdb|2V5B|A Chain A, The Monomerization Of Triosephosphate Isomerase From
Trypanosoma Cruzi
Length = 244
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK NG++ + +++ L D V+ VV +++ K L + AAQN
Sbjct: 10 AANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAG 69
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
+ A L D GI WV+LGHSERR +GE + ++AEKVA A G +V+ C+
Sbjct: 70 NAD--------ALASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQAXAAGFHVIVCV 121
Query: 127 GEKLEEREAGQTEAVVYKQICCV 149
GE EEREAG+T AVV Q+ V
Sbjct: 122 GETNEEREAGRTAAVVLTQLAAV 144
>pdb|1YYA|A Chain A, Crystal Structure Of Tt0473, Putative Triosephosphate
Isomerase From Thermus Thermophilus Hb8
pdb|1YYA|B Chain B, Crystal Structure Of Tt0473, Putative Triosephosphate
Isomerase From Thermus Thermophilus Hb8
Length = 250
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKK--GPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
R+ V GNWKM+ E LK+ PL + V+ P + + + L + V
Sbjct: 2 RRVLVAGNWKMHKTPSEARVWFAELKRLLPPLQSEAAVLPAFPILPVA-KEVLAETQVGY 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQ+ +GA+TGE+S ML D+G + I+GHSERR GE D+L+AEK LE G+
Sbjct: 61 GAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGI 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
+ C+GE LE RE G+ +Q+
Sbjct: 121 TPILCVGEPLEVREKGEAVPYTLRQL 146
>pdb|3KXQ|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Bartonella Henselae At 1.6a Resolution
pdb|3KXQ|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Bartonella Henselae At 1.6a Resolution
Length = 275
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 6 WVGGNWKMNGNKK---EIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPA 61
++ GNWKMNG + E+ I + L E ++ VPA L A +L N+
Sbjct: 29 FIAGNWKMNGTGESLGELRAIAAGISS-DLGRLFEALICVPATLLSRAFDILGGENILLG 87
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
QNC+ G +TG++S ML + G VI+GHSERR V+ E D+++ KV A GL
Sbjct: 88 GQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGLV 147
Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
+ C+GE LEER++ + V+ +Q+
Sbjct: 148 ALICVGETLEERKSNKVLDVLTRQL 172
>pdb|1TRI|A Chain A, The Crystal Structure Of An Engineered Monomeric
Triosephosphate Isomerase, Monotim: The Correct
Modelling Of An Eight-Residue Loop
Length = 243
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNA 70
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
+ A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 71 D--------ALASLKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 122
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 123 TLQERESGRTAVVVLTQ 139
>pdb|4G1K|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Burkholderia Thailandensis
pdb|4G1K|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Burkholderia Thailandensis
pdb|4G1K|C Chain C, Crystal Structure Of Triosephosphate Isomerase From
Burkholderia Thailandensis
pdb|4G1K|D Chain D, Crystal Structure Of Triosephosphate Isomerase From
Burkholderia Thailandensis
Length = 272
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 9 GNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGV--PAIYLEYAKCLLPSN-VAPAAQNC 65
GNWKM+G + ++ + +G V +GV P YL A+ L V+ +Q+
Sbjct: 32 GNWKMHGRLSGNQALLTEVAQGAQAVHDNVAIGVCVPFPYLAQAQAQLQGGRVSWGSQDV 91
Query: 66 YKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVAC 125
+GA+TGE++ M+ + G + I+GHSERR GE + +A K AL GL + C
Sbjct: 92 SAHEQGAYTGEVAAGMVAEFGAAYAIVGHSERRAYHGESNETVAAKARRALAAGLTPIVC 151
Query: 126 IGEKLEEREAGQTEAVVYKQICCV 149
+GE L EREAG TE VV Q+ V
Sbjct: 152 VGETLAEREAGTTEQVVGAQLDAV 175
>pdb|1MSS|A Chain A, Large Scale Structural Rearrangements Of The Front Loops
In Monomerised Triosephosphate Isomerase, As Deduced
From The Comparison Of The Structural Properties Of
Monotim And Its Point Mutation Variant Monoss
pdb|1MSS|B Chain B, Large Scale Structural Rearrangements Of The Front Loops
In Monomerised Triosephosphate Isomerase, As Deduced
From The Comparison Of The Structural Properties Of
Monotim And Its Point Mutation Variant Monoss
pdb|1TTJ|A Chain A, Three New Crystal Structures Of Point Mutation Variants Of
Monotim: Conformational Flexibility Of Loop-1,Loop-4 And
Loop-8
Length = 243
Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV + +L K L AAQN
Sbjct: 11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTSSHLAMTKERLSHPKFVIAAQNAGNA 70
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
+ A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 71 D--------ALASLKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 122
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 123 TLQERESGRTAVVVLTQ 139
>pdb|1TTI|A Chain A, Three New Crystal Structures Of Point Mutation Variants Of
Monotim: Conformational Flexibility Of Loop-1,Loop-4 And
Loop-8
Length = 243
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA--- 67
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
G G A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 68 --GNADG---LASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACIGE 122
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 123 TLQERESGRTAVVVLTQ 139
>pdb|2WSQ|A Chain A, Monotim Mutant Rmm0-1, Dimeric Form.
pdb|2WSQ|B Chain B, Monotim Mutant Rmm0-1, Dimeric Form.
pdb|2WSQ|C Chain C, Monotim Mutant Rmm0-1, Dimeric Form.
pdb|2WSQ|D Chain D, Monotim Mutant Rmm0-1, Dimeric Form
Length = 242
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 10 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVAPSFVHLAMTKERLSHPKFVIAAQNA--- 66
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
G G A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 67 --GNADG---LASLKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 121
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 122 TLQERESGRTAVVVLTQ 138
>pdb|2WSR|A Chain A, Monotim Mutant Rmm0-1, Monomeric Form
Length = 242
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK NG+++ + ++D ++ V+ VV + + K L AAQN
Sbjct: 10 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVAPRFVMIAMTKERLSHPKFVIAAQNA--- 66
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
G G A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 67 --GNADG---LASLKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 121
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 122 TLQERESGRTAVVVLTQ 138
>pdb|2Y6Z|A Chain A, Crystallographic Structure Of Gm23 An Example Of Catalytic
Migration From Tim To Thiamin Phosphate Synthase
Length = 256
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 15/145 (10%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP-----AAQN 64
NWK NG + + ++D ++ V+ VV P+ Y+ A+ + ++ AAQN
Sbjct: 22 NWKCNGGGQSLSELIDLFNSTSINHDVQCVV-APSWYMG-AQAMTKERLSHPKFVIAAQN 79
Query: 65 CYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVA 124
+ A L D GI W++LGHSERR +GE + ++A+KVA A+ +G V+A
Sbjct: 80 AGNAD--------ALASLKDFGISWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIA 131
Query: 125 CIGEKLEEREAGQTEAVVYKQICCV 149
CIGE L+ER +G+T VV QI +
Sbjct: 132 CIGETLQERSSGRTAVVVLTQITAI 156
>pdb|1ML1|A Chain A, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|C Chain C, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|E Chain E, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|G Chain G, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|I Chain I, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|K Chain K, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
Length = 243
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK +G+ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 9 AANWKCSGSPDSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 68
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
+ A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACI
Sbjct: 69 NAD--------ALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACI 120
Query: 127 GEKLEEREAGQTEAVVYKQ 145
GE L+ERE+G+T VV Q
Sbjct: 121 GETLQERESGRTAVVVLTQ 139
>pdb|2Y70|A Chain A, Crystallographic Structure Of Gm23, Mutant G89d, An
Example Of Catalytic Migration From Tim To Thiamin
Phosphate Synthase.
pdb|2Y70|B Chain B, Crystallographic Structure Of Gm23, Mutant G89d, An
Example Of Catalytic Migration From Tim To Thiamin
Phosphate Synthase.
pdb|2Y70|C Chain C, Crystallographic Structure Of Gm23, Mutant G89d, An
Example Of Catalytic Migration From Tim To Thiamin
Phosphate Synthase.
pdb|2Y70|D Chain D, Crystallographic Structure Of Gm23, Mutant G89d, An
Example Of Catalytic Migration From Tim To Thiamin
Phosphate Synthase
Length = 245
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 15/147 (10%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP-----AA 62
NWK NG+++ + ++D ++ V+ VV P+ Y+ A+ + ++ AA
Sbjct: 9 AANWKCNGSQQSLSELIDLFNSTSINHDVQCVVA-PSWYMG-AQAMTKERLSHPKFVIAA 66
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
QN + A L D GI W++L HSERR +GE + ++A+KVA A+ +G V
Sbjct: 67 QNAGNAD--------ALASLKDFGISWIVLDHSERRAYYGETNEIVADKVAAAVASGFMV 118
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGE L+ER +G+T VV QI +
Sbjct: 119 IACIGETLQERSSGRTAVVVLTQITAI 145
>pdb|3TA6|A Chain A, Structure Of Mycobacterium Tuberculosis Triosephosphate
Isomerase
pdb|3TA6|B Chain B, Structure Of Mycobacterium Tuberculosis Triosephosphate
Isomerase
pdb|3TAO|A Chain A, Structure Of Mycobacterium Tuberculosis Triosephosphate
Isomerase Bound To Phosphoglycolohydroxamate
pdb|3TAO|B Chain B, Structure Of Mycobacterium Tuberculosis Triosephosphate
Isomerase Bound To Phosphoglycolohydroxamate
Length = 267
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD---PKVEVVVGVPAIYLEYAKCLLPSN 57
MSRK + GNWKMN N E +V + D +V+V V P L + L+ +
Sbjct: 1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGD 60
Query: 58 ---VAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAH 114
+ AQ+ GA+TG++S A L +G +V++GHSERR E D+L+A K A
Sbjct: 61 KLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAAT 120
Query: 115 ALETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
AL+ GL + CIGE L+ REAG A +Q+
Sbjct: 121 ALKHGLTPIVCIGEHLDVREAGNHVAHNIEQL 152
>pdb|1DKW|A Chain A, Crystal Structure Of Triose-Phosphate Isomerase With
Modified Substrate Binding Site
pdb|1DKW|B Chain B, Crystal Structure Of Triose-Phosphate Isomerase With
Modified Substrate Binding Site
Length = 238
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK +G+ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 8 AANWK-SGSPDSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA- 65
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
E S L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACI
Sbjct: 66 -------GNEDSLPSLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACI 118
Query: 127 GEKLEEREAGQTEAVVYKQ 145
GE L+ERE+G+T VV Q
Sbjct: 119 GETLQERESGRTAVVVLTQ 137
>pdb|2V2D|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V2H|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V2H|B Chain B, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V2H|C Chain C, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
Length = 242
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 10 NWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKV 68
NWK +G+ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 11 NWK-SGSPDSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNA 69
Query: 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128
+ A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACIGE
Sbjct: 70 D--------ALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACIGE 121
Query: 129 KLEEREAGQTEAVVYKQ 145
L+ERE+G+T VV Q
Sbjct: 122 TLQERESGRTAVVVLTQ 138
>pdb|2VEK|A Chain A, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEK|B Chain B, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEL|A Chain A, Structure-based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEL|B Chain B, Structure-based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEM|A Chain A, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEM|B Chain B, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEN|A Chain A, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEN|B Chain B, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2X16|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X16|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1R|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1R|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1S|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1S|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1T|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1T|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1U|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1U|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X2G|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X2G|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
Length = 238
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK +G+ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 8 AANWK-SGSPDSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 66
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
+ A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACI
Sbjct: 67 NAD--------ALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACI 118
Query: 127 GEKLEEREAGQTEAVVYKQ 145
GE L+ERE+G+T VV Q
Sbjct: 119 GETLQERESGRTAVVVLTQ 137
>pdb|2VEI|A Chain A, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEI|B Chain B, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEI|C Chain C, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
Length = 238
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 8 GGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCY 66
NWK +G+ + ++D ++ V+ VV ++L K L AAQN
Sbjct: 8 AANWK-SGSPDSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 66
Query: 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126
+ A L D G++W++LGHSERR +GE + ++A+KVA A+ +G V+ACI
Sbjct: 67 NAD--------ALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACI 118
Query: 127 GEKLEEREAGQTEAVVYKQ 145
GE L+ERE+G+T VV Q
Sbjct: 119 GETLQERESGRTAVVVLTQ 137
>pdb|3GVG|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Mycobacterium Tuberculosis
pdb|3GVG|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Mycobacterium Tuberculosis
Length = 283
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD---PKVEVVVGVPAIYLEYAKCLLPSN 57
+SRK + GNWKMN N E +V + D +V+V V P L + L+ +
Sbjct: 23 VSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGD 82
Query: 58 ---VAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAH 114
+ AQ+ GA+TG++S A L +G +V++GHSERR E D+L+A K A
Sbjct: 83 KLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAAT 142
Query: 115 ALETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
AL+ GL + CIGE L+ REAG A +Q+
Sbjct: 143 ALKHGLTPIVCIGEHLDVREAGNHVAHNIEQL 174
>pdb|3S6D|A Chain A, Crystal Structure Of A Putative Triosephosphate Isomerase
From Coccidioides Immitis
Length = 310
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 55 PSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAH 114
P + AQ+C+ G +TGE+SP L D+ + V LGH+ERR +FGE D +A K A
Sbjct: 109 PPPLLLGAQDCFWDSLGPYTGEISPVCLRDMNVSIVELGHAERRAIFGETDQQVARKAAA 168
Query: 115 ALETGLNVVACIGE 128
A + GL + CIGE
Sbjct: 169 AADQGLIPLVCIGE 182
>pdb|2JGQ|A Chain A, Kinetics And Structural Properties Of Triosephosphate
Isomerase From Helicobacter Pylori
pdb|2JGQ|B Chain B, Kinetics And Structural Properties Of Triosephosphate
Isomerase From Helicobacter Pylori
Length = 233
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 53 LLPS---NVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIA 109
LLP+ + QN Y GAFTGE++ L ++ I +++GHSERR + E S +
Sbjct: 45 LLPNSFLHFTLGVQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESPSFLK 104
Query: 110 EKVAHALETGLNVVACIGEKLEEREAG 136
EK +V CIGE+L RE G
Sbjct: 105 EKFDFFKSKNFKIVYCIGEELTTREKG 131
>pdb|2H6R|A Chain A, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|B Chain B, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|C Chain C, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|D Chain D, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|E Chain E, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|F Chain F, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|G Chain G, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|H Chain H, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
Length = 219
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%)
Query: 38 VVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSER 97
+ +GV +++ + N+ AQ+ + G+ TG + + D G ++ HSE+
Sbjct: 34 ITIGVAPQFVDLRMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEK 93
Query: 98 RNVFGEPDSLIAEKVAHALET 118
R + + +++I + LET
Sbjct: 94 RMLLADIEAVINKCKNLGLET 114
>pdb|1HG3|A Chain A, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|B Chain B, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|C Chain C, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|D Chain D, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|E Chain E, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|F Chain F, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|G Chain G, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|H Chain H, Crystal Structure Of Tetrameric Tim From Pyrococcus Woesei
Length = 225
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQ+ + G+ TG + P + + G +L HSE R + + ++ I A E GL
Sbjct: 64 AQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAI----RRAEEVGLM 119
Query: 122 VVAC 125
+ C
Sbjct: 120 TMVC 123
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 95 SERRNVFGEPDSLIAEKVAHALETGLNVVAC 125
++ + E ++LI EKV L TG NV+ C
Sbjct: 270 TQMQKFLDEEENLIKEKVDKILATGANVIIC 300
>pdb|1W0M|A Chain A, Triosephosphate Isomerase From Thermoproteus Tenax
pdb|1W0M|B Chain B, Triosephosphate Isomerase From Thermoproteus Tenax
pdb|1W0M|C Chain C, Triosephosphate Isomerase From Thermoproteus Tenax
pdb|1W0M|D Chain D, Triosephosphate Isomerase From Thermoproteus Tenax
pdb|1W0M|E Chain E, Triosephosphate Isomerase From Thermoproteus Tenax
pdb|1W0M|F Chain F, Triosephosphate Isomerase From Thermoproteus Tenax
pdb|1W0M|G Chain G, Triosephosphate Isomerase From Thermoproteus Tenax
pdb|1W0M|H Chain H, Triosephosphate Isomerase From Thermoproteus Tenax
Length = 226
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 71 GAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVAC 125
GA T +S + + G VIL HSE + +A VA A GL+VV C
Sbjct: 70 GAHTAHVSLENIKEAGGSGVILNHSEAPLKLND----LARLVAKAKSLGLDVVVC 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,802,920
Number of Sequences: 62578
Number of extensions: 200017
Number of successful extensions: 568
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 89
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)