Query psy7461
Match_columns 149
No_of_seqs 125 out of 1023
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 18:56:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02561 triosephosphate isome 100.0 1.3E-58 2.8E-63 377.8 16.9 148 1-148 1-150 (253)
2 PTZ00333 triosephosphate isome 100.0 3.7E-58 8E-63 375.6 16.7 148 1-148 2-151 (255)
3 PRK14567 triosephosphate isome 100.0 8E-58 1.7E-62 373.0 16.7 145 4-148 2-147 (253)
4 PRK15492 triosephosphate isome 100.0 6.9E-58 1.5E-62 374.9 16.4 147 2-148 1-156 (260)
5 PRK00042 tpiA triosephosphate 100.0 3.3E-57 7.1E-62 369.1 16.7 146 3-148 1-148 (250)
6 PRK14566 triosephosphate isome 100.0 4.1E-57 8.8E-62 370.0 17.0 147 2-148 3-157 (260)
7 COG0149 TpiA Triosephosphate i 100.0 3.9E-57 8.4E-62 367.6 16.3 147 2-148 1-150 (251)
8 PLN02429 triosephosphate isome 100.0 1.4E-56 3.1E-61 374.5 17.1 147 2-148 63-209 (315)
9 cd00311 TIM Triosephosphate is 100.0 1.7E-56 3.8E-61 363.3 16.7 144 5-148 1-146 (242)
10 PRK14565 triosephosphate isome 100.0 2E-56 4.4E-61 361.9 16.8 144 4-148 2-147 (237)
11 PF00121 TIM: Triosephosphate 100.0 3.3E-57 7.3E-62 367.9 12.0 144 5-148 1-146 (244)
12 KOG1643|consensus 100.0 3.2E-56 6.9E-61 351.5 14.1 148 1-148 1-148 (247)
13 PRK14905 triosephosphate isome 100.0 1.1E-55 2.5E-60 375.0 16.3 148 1-148 1-157 (355)
14 PRK13962 bifunctional phosphog 100.0 1.9E-53 4.1E-58 382.6 16.9 147 2-148 396-543 (645)
15 TIGR00419 tim triosephosphate 100.0 4.6E-46 9.9E-51 296.0 14.4 117 6-128 1-119 (205)
16 PRK04302 triosephosphate isome 100.0 1.6E-35 3.4E-40 236.6 13.2 124 2-131 1-126 (223)
17 cd04729 NanE N-acetylmannosami 94.1 1.7 3.6E-05 34.2 12.0 99 18-127 27-131 (219)
18 PLN02591 tryptophan synthase 87.9 0.97 2.1E-05 37.1 4.6 47 79-133 99-146 (250)
19 PRK13111 trpA tryptophan synth 87.4 0.94 2E-05 37.3 4.3 51 76-134 107-158 (258)
20 PRK08057 cobalt-precorrin-6x r 86.9 1.3 2.8E-05 36.3 4.8 53 69-130 173-225 (248)
21 cd06525 GH25_Lyc-like Lyc mura 79.1 5.4 0.00012 30.6 5.3 48 72-122 7-54 (184)
22 TIGR00715 precor6x_red precorr 76.7 3.7 8E-05 33.8 3.9 54 69-130 180-233 (256)
23 TIGR00433 bioB biotin syntheta 73.1 18 0.00038 29.4 7.1 63 71-134 119-190 (296)
24 PRK13125 trpA tryptophan synth 71.4 15 0.00033 29.5 6.2 46 79-129 94-139 (244)
25 PRK08508 biotin synthase; Prov 70.6 15 0.00033 30.2 6.1 62 74-135 97-170 (279)
26 COG0502 BioB Biotin synthase a 69.2 10 0.00022 32.7 5.0 59 76-134 144-211 (335)
27 PF02571 CbiJ: Precorrin-6x re 67.8 12 0.00025 30.7 4.9 107 9-130 110-229 (249)
28 PF02579 Nitro_FeMo-Co: Dinitr 66.5 11 0.00025 24.9 3.9 51 69-131 36-86 (94)
29 cd00851 MTH1175 This uncharact 64.7 19 0.00041 24.3 4.8 46 74-131 51-96 (103)
30 cd06413 GH25_muramidase_1 Unch 64.1 18 0.00039 27.9 5.1 47 72-121 10-56 (191)
31 cd00331 IGPS Indole-3-glycerol 60.5 33 0.00071 26.7 6.1 72 43-129 60-131 (217)
32 PLN02389 biotin synthase 59.8 37 0.00081 29.5 6.8 113 15-135 116-246 (379)
33 cd06412 GH25_CH-type CH-type ( 59.6 23 0.0005 27.5 5.0 48 72-122 8-55 (199)
34 PF01183 Glyco_hydro_25: Glyco 59.0 12 0.00025 28.4 3.2 53 72-127 5-58 (181)
35 PRK00230 orotidine 5'-phosphat 58.8 80 0.0017 25.2 8.2 76 34-116 147-227 (230)
36 cd06523 GH25_PlyB-like PlyB is 58.2 26 0.00057 26.7 5.1 48 72-122 7-55 (177)
37 cd00377 ICL_PEPM Members of th 57.9 44 0.00095 27.0 6.5 71 16-98 158-231 (243)
38 cd06524 GH25_YegX-like YegX is 57.9 26 0.00055 27.0 5.0 48 72-122 7-58 (194)
39 cd06522 GH25_AtlA-like AtlA is 55.4 29 0.00063 26.8 4.9 48 72-122 8-58 (192)
40 PF14488 DUF4434: Domain of un 55.3 36 0.00077 26.1 5.3 51 79-129 26-88 (166)
41 TIGR00262 trpA tryptophan synt 54.4 50 0.0011 27.0 6.4 47 79-133 108-155 (256)
42 cd00599 GH25_muramidase Endo-N 54.1 36 0.00078 25.6 5.2 47 72-121 7-53 (186)
43 cd06415 GH25_Cpl1-like Cpl-1 l 53.9 25 0.00054 27.2 4.3 47 72-122 8-54 (196)
44 PF01301 Glyco_hydro_35: Glyco 52.7 32 0.00069 29.0 5.1 50 79-128 30-85 (319)
45 PRK13813 orotidine 5'-phosphat 51.7 1.1E+02 0.0024 23.6 8.5 32 79-114 178-210 (215)
46 PRK08445 hypothetical protein; 51.4 33 0.00073 29.3 5.1 60 76-135 144-215 (348)
47 TIGR01689 EcbF-BcbF capsule bi 51.2 42 0.0009 24.7 4.9 48 86-134 7-55 (126)
48 cd06414 GH25_LytC-like The Lyt 50.8 45 0.00098 25.6 5.3 51 72-122 8-58 (191)
49 PRK00278 trpC indole-3-glycero 50.1 64 0.0014 26.3 6.4 75 43-132 99-173 (260)
50 KOG3076|consensus 49.8 42 0.00091 27.0 5.0 78 35-116 87-181 (206)
51 PRK11320 prpB 2-methylisocitra 48.2 28 0.00062 29.3 4.1 79 35-121 179-258 (292)
52 cd06416 GH25_Lys1-like Lys-1 i 48.2 30 0.00064 26.6 3.9 48 72-122 8-55 (196)
53 KOG4131|consensus 48.1 95 0.0021 25.9 6.9 43 73-119 211-257 (272)
54 cd06419 GH25_muramidase_2 Unch 47.9 49 0.0011 25.8 5.2 48 72-122 15-62 (190)
55 PF03129 HGTP_anticodon: Antic 47.8 12 0.00027 24.9 1.5 43 79-131 22-64 (94)
56 PRK07360 FO synthase subunit 2 47.5 45 0.00097 28.6 5.3 60 76-135 163-234 (371)
57 PRK14072 6-phosphofructokinase 46.9 36 0.00078 30.0 4.6 50 82-134 67-118 (416)
58 TIGR03551 F420_cofH 7,8-dideme 46.8 38 0.00082 28.6 4.7 63 79-143 144-218 (343)
59 cd00861 ProRS_anticodon_short 46.7 17 0.00037 24.0 2.1 43 79-131 24-66 (94)
60 COG1217 TypA Predicted membran 45.5 21 0.00045 32.7 2.9 70 68-146 76-145 (603)
61 PRK11840 bifunctional sulfur c 45.4 23 0.0005 30.4 3.1 67 64-134 138-213 (326)
62 cd04724 Tryptophan_synthase_al 44.8 90 0.0019 25.1 6.4 46 79-132 97-143 (242)
63 PF10137 TIR-like: Predicted n 44.8 33 0.00072 25.3 3.5 46 90-147 2-49 (125)
64 cd08205 RuBisCO_IV_RLP Ribulos 44.7 1.8E+02 0.0039 25.1 8.6 104 3-116 197-309 (367)
65 PF02449 Glyco_hydro_42: Beta- 44.0 26 0.00057 29.7 3.3 46 78-127 15-68 (374)
66 COG2099 CobK Precorrin-6x redu 43.7 1.9E+02 0.0042 24.1 8.5 109 3-125 101-228 (257)
67 PTZ00413 lipoate synthase; Pro 43.5 2E+02 0.0044 25.5 8.7 118 5-130 196-333 (398)
68 TIGR02317 prpB methylisocitrat 43.4 33 0.00071 28.8 3.7 78 35-120 174-252 (285)
69 PRK00955 hypothetical protein; 41.7 1.5E+02 0.0033 27.7 8.0 101 17-123 386-511 (620)
70 TIGR03699 mena_SCO4550 menaqui 41.5 69 0.0015 26.8 5.4 60 76-135 143-214 (340)
71 TIGR01618 phage_P_loop phage n 41.1 42 0.0009 27.0 3.9 105 16-125 64-178 (220)
72 PF12083 DUF3560: Domain of un 40.9 8.9 0.00019 28.5 -0.0 10 90-99 45-55 (126)
73 COG3370 Uncharacterized protei 40.8 12 0.00027 27.3 0.7 40 86-127 36-75 (113)
74 TIGR03471 HpnJ hopanoid biosyn 40.7 1.1E+02 0.0025 26.8 6.9 63 79-143 290-363 (472)
75 TIGR03700 mena_SCO4494 putativ 40.2 63 0.0014 27.4 5.0 57 79-135 153-221 (351)
76 TIGR03572 WbuZ glycosyl amidat 39.9 57 0.0012 25.6 4.5 47 80-129 160-206 (232)
77 cd00841 MPP_YfcE Escherichia c 39.7 30 0.00065 25.0 2.6 23 79-101 95-117 (155)
78 cd01985 ETF The electron trans 38.4 1.4E+02 0.0031 22.3 6.4 38 77-121 82-119 (181)
79 PRK07094 biotin synthase; Prov 38.1 1E+02 0.0022 25.4 5.9 64 71-135 125-199 (323)
80 PF07745 Glyco_hydro_53: Glyco 38.0 77 0.0017 27.2 5.2 44 78-127 29-79 (332)
81 PRK10343 RNA-binding protein Y 37.2 52 0.0011 23.3 3.4 28 110-143 8-35 (97)
82 PF14871 GHL6: Hypothetical gl 37.2 1.1E+02 0.0023 22.6 5.3 45 79-124 6-62 (132)
83 COG0614 FepB ABC-type Fe3+-hyd 36.5 43 0.00093 26.8 3.3 40 60-99 221-260 (319)
84 cd01674 Homoaconitase_Swivel H 35.7 26 0.00055 26.3 1.7 55 57-127 47-101 (129)
85 TIGR00253 RNA_bind_YhbY putati 35.6 63 0.0014 22.7 3.6 28 110-143 6-33 (95)
86 CHL00130 rbcS ribulose-1,5-bis 35.1 53 0.0012 24.9 3.3 25 103-127 14-38 (138)
87 TIGR00423 radical SAM domain p 34.2 65 0.0014 26.7 4.1 64 78-143 109-184 (309)
88 PF01497 Peripla_BP_2: Peripla 34.0 49 0.0011 25.2 3.2 50 40-95 154-203 (238)
89 PRK06256 biotin synthase; Vali 33.7 1E+02 0.0022 25.6 5.3 62 79-142 155-225 (336)
90 PRK09248 putative hydrolase; V 33.6 44 0.00095 26.6 2.9 80 35-121 72-155 (246)
91 TIGR00238 KamA family protein. 32.7 1E+02 0.0023 26.0 5.2 44 74-121 209-252 (331)
92 COG3454 Metal-dependent hydrol 32.3 73 0.0016 27.8 4.1 55 36-92 245-299 (377)
93 PRK01254 hypothetical protein; 32.0 2.4E+02 0.0052 26.9 7.7 100 17-122 467-589 (707)
94 PF08799 PRP4: pre-mRNA proces 31.0 56 0.0012 18.3 2.2 17 99-115 13-29 (30)
95 COG3981 Predicted acetyltransf 30.9 50 0.0011 26.0 2.7 39 94-134 107-147 (174)
96 TIGR02482 PFKA_ATP 6-phosphofr 30.5 90 0.0019 26.3 4.4 41 89-131 63-103 (301)
97 PRK13307 bifunctional formalde 30.5 1.7E+02 0.0036 25.7 6.2 48 67-125 235-282 (391)
98 PRK14126 cell division protein 30.5 25 0.00054 24.1 0.8 34 85-119 14-47 (85)
99 COG2179 Predicted hydrolase of 30.2 2E+02 0.0043 22.7 5.9 59 76-135 17-77 (175)
100 cd01988 Na_H_Antiporter_C The 30.2 79 0.0017 21.5 3.5 34 74-107 82-119 (132)
101 PF08410 DUF1737: Domain of un 29.7 71 0.0015 20.3 2.8 26 98-123 7-32 (54)
102 smart00852 MoCF_biosynth Proba 29.4 1.3E+02 0.0029 21.4 4.7 64 73-144 18-81 (135)
103 cd07381 MPP_CapA CapA and rela 29.2 2.8E+02 0.0061 21.7 8.2 52 75-132 66-119 (239)
104 PRK10513 sugar phosphate phosp 29.2 93 0.002 24.6 4.1 40 86-131 9-48 (270)
105 cd01579 AcnA_Bact_Swivel Bacte 29.1 64 0.0014 23.6 2.9 57 58-130 51-107 (121)
106 COG0084 TatD Mg-dependent DNas 28.6 57 0.0012 26.9 2.8 33 99-134 13-45 (256)
107 PLN02289 ribulose-bisphosphate 28.4 73 0.0016 25.1 3.2 24 103-126 76-99 (176)
108 cd00840 MPP_Mre11_N Mre11 nucl 28.4 63 0.0014 24.4 2.9 45 57-101 159-204 (223)
109 COG0327 Uncharacterized conser 28.3 41 0.0009 27.4 2.0 29 73-101 194-225 (250)
110 COG0856 Orotate phosphoribosyl 28.0 3.2E+02 0.0069 21.9 9.5 114 7-126 54-175 (203)
111 PF00994 MoCF_biosynth: Probab 28.0 1.2E+02 0.0027 21.9 4.3 62 75-144 19-80 (144)
112 PRK09936 hypothetical protein; 27.9 1.8E+02 0.0039 24.8 5.7 65 60-131 26-95 (296)
113 cd00562 NifX_NifB This CD repr 27.6 1.6E+02 0.0036 19.4 4.6 43 73-127 48-90 (102)
114 TIGR03662 Chlor_Arch_YYY Chlor 27.4 33 0.00071 32.5 1.3 45 76-127 671-715 (723)
115 TIGR01482 SPP-subfamily Sucros 27.3 1.1E+02 0.0025 23.2 4.2 41 86-132 4-44 (225)
116 COG2513 PrpB PEP phosphonomuta 27.2 60 0.0013 27.5 2.7 63 35-101 179-242 (289)
117 PF04343 DUF488: Protein of un 26.8 1.5E+02 0.0033 20.9 4.6 59 71-130 29-110 (122)
118 PRK05926 hypothetical protein; 26.6 1.2E+02 0.0026 26.2 4.5 56 79-134 172-239 (370)
119 PRK05799 coproporphyrinogen II 26.3 2E+02 0.0043 24.3 5.8 57 78-134 101-169 (374)
120 PRK09240 thiH thiamine biosynt 25.8 1.3E+02 0.0028 25.8 4.6 55 80-134 167-235 (371)
121 PRK10411 DNA-binding transcrip 25.6 3.5E+02 0.0076 21.6 8.1 60 68-129 147-210 (240)
122 PLN02965 Probable pheophorbida 25.6 56 0.0012 25.4 2.2 18 80-97 63-82 (255)
123 cd03527 RuBisCO_small Ribulose 25.4 1.1E+02 0.0023 21.9 3.4 22 103-124 12-33 (99)
124 PF13911 AhpC-TSA_2: AhpC/TSA 25.2 56 0.0012 22.6 2.0 19 79-97 6-24 (115)
125 PRK15014 6-phospho-beta-glucos 25.0 1E+02 0.0022 27.6 4.0 48 79-126 75-130 (477)
126 cd01917 ACS_2 Acetyl-CoA synth 24.8 2.3E+02 0.0049 24.1 5.7 55 71-133 104-167 (287)
127 PRK14340 (dimethylallyl)adenos 24.8 4.8E+02 0.01 22.9 9.1 9 58-66 261-269 (445)
128 COG2247 LytB Putative cell wal 24.8 99 0.0022 26.8 3.6 48 79-131 93-144 (337)
129 COG0809 QueA S-adenosylmethion 24.7 81 0.0018 27.4 3.1 27 102-129 232-258 (348)
130 PF00365 PFK: Phosphofructokin 24.7 1E+02 0.0022 25.5 3.7 58 69-132 168-226 (282)
131 COG0041 PurE Phosphoribosylcar 24.2 2.6E+02 0.0057 21.7 5.5 43 78-125 21-63 (162)
132 cd00363 PFK Phosphofructokinas 24.1 1.8E+02 0.004 24.7 5.2 46 89-136 64-109 (338)
133 cd00860 ThrRS_anticodon ThrRS 24.1 1.3E+02 0.0027 19.3 3.4 25 106-130 38-62 (91)
134 PRK01130 N-acetylmannosamine-6 24.0 1.4E+02 0.0031 23.2 4.2 48 79-129 132-182 (221)
135 PRK13660 hypothetical protein; 24.0 1.7E+02 0.0037 23.0 4.6 41 89-129 4-52 (182)
136 PRK05692 hydroxymethylglutaryl 24.0 3.1E+02 0.0066 22.7 6.4 34 112-145 85-121 (287)
137 TIGR03356 BGL beta-galactosida 23.9 2E+02 0.0044 25.1 5.6 48 79-126 60-114 (427)
138 cd07943 DRE_TIM_HOA 4-hydroxy- 23.8 2.1E+02 0.0045 23.0 5.3 15 80-94 29-43 (263)
139 PRK09856 fructoselysine 3-epim 23.6 2.1E+02 0.0046 22.6 5.3 50 76-125 16-66 (275)
140 PRK09852 cryptic 6-phospho-bet 23.5 1E+02 0.0022 27.6 3.7 47 80-126 78-132 (474)
141 KOG0174|consensus 23.4 60 0.0013 26.3 2.0 20 8-27 159-178 (224)
142 PF02548 Pantoate_transf: Keto 23.4 54 0.0012 27.3 1.8 20 77-96 27-46 (261)
143 PF06568 DUF1127: Domain of un 23.1 58 0.0013 18.9 1.4 13 76-88 22-34 (40)
144 COG1534 Predicted RNA-binding 23.1 1.3E+02 0.0029 21.4 3.5 27 111-143 8-34 (97)
145 COG1433 Uncharacterized conser 22.9 1.8E+02 0.0038 21.4 4.3 55 63-129 40-96 (121)
146 PF03982 DAGAT: Diacylglycerol 22.7 65 0.0014 27.1 2.2 19 112-130 172-192 (297)
147 PTZ00170 D-ribulose-5-phosphat 22.6 1.3E+02 0.0029 23.9 3.9 44 74-121 179-226 (228)
148 PRK10530 pyridoxal phosphate ( 22.5 1.7E+02 0.0038 22.8 4.6 41 85-131 8-48 (272)
149 TIGR00282 metallophosphoestera 22.5 1.6E+02 0.0034 24.4 4.4 46 46-93 21-66 (266)
150 cd02930 DCR_FMN 2,4-dienoyl-Co 22.5 2.2E+02 0.0048 24.0 5.4 77 47-129 194-285 (353)
151 PRK00147 queA S-adenosylmethio 22.4 82 0.0018 27.3 2.7 26 103-129 231-256 (342)
152 TIGR02320 PEP_mutase phosphoen 22.3 66 0.0014 26.9 2.1 43 74-120 221-263 (285)
153 COG0859 RfaF ADP-heptose:LPS h 22.1 3.8E+02 0.0082 22.3 6.7 41 88-128 176-217 (334)
154 PLN02417 dihydrodipicolinate s 22.0 2.7E+02 0.0059 22.7 5.7 50 80-129 29-80 (280)
155 PF00070 Pyr_redox: Pyridine n 21.9 2.3E+02 0.0049 18.1 4.7 52 71-124 7-59 (80)
156 KOG3859|consensus 21.8 82 0.0018 27.3 2.6 18 112-129 33-51 (406)
157 TIGR01675 plant-AP plant acid 21.5 1.6E+02 0.0036 23.8 4.2 23 112-134 129-151 (229)
158 PF02750 Synapsin_C: Synapsin, 21.4 15 0.00033 29.5 -1.7 27 2-29 114-149 (203)
159 PF02662 FlpD: Methyl-viologen 21.4 2.9E+02 0.0063 20.0 5.2 48 73-121 36-92 (124)
160 PF00694 Aconitase_C: Aconitas 21.4 92 0.002 23.2 2.5 55 56-126 74-129 (131)
161 PRK01424 S-adenosylmethionine: 21.3 88 0.0019 27.4 2.7 26 103-129 253-278 (366)
162 TIGR00674 dapA dihydrodipicoli 21.2 1.9E+02 0.0042 23.5 4.7 50 80-129 26-77 (285)
163 cd04890 ACT_AK-like_1 ACT doma 21.2 1.5E+02 0.0032 17.9 3.1 54 59-115 4-57 (62)
164 PRK07695 transcriptional regul 21.1 1.8E+02 0.0039 22.3 4.3 16 79-94 108-123 (201)
165 PRK03202 6-phosphofructokinase 21.1 1.6E+02 0.0034 25.0 4.2 39 90-130 66-104 (320)
166 cd04735 OYE_like_4_FMN Old yel 21.1 2.5E+02 0.0054 23.8 5.4 50 79-129 241-293 (353)
167 TIGR02319 CPEP_Pphonmut carbox 21.0 1.6E+02 0.0035 24.8 4.2 77 35-121 178-257 (294)
168 PRK11126 2-succinyl-6-hydroxy- 21.0 77 0.0017 24.0 2.1 18 79-96 57-75 (242)
169 TIGR01163 rpe ribulose-phospha 21.0 2.9E+02 0.0062 20.8 5.4 40 79-126 72-111 (210)
170 PLN02334 ribulose-phosphate 3- 20.7 1.4E+02 0.0031 23.5 3.7 13 81-93 190-202 (229)
171 PRK09802 DNA-binding transcrip 20.7 4.7E+02 0.01 21.3 8.8 58 68-125 161-221 (269)
172 TIGR02351 thiH thiazole biosyn 20.7 2E+02 0.0044 24.5 4.9 55 80-134 166-234 (366)
173 cd00363 PFK Phosphofructokinas 20.6 4.2E+02 0.0092 22.5 6.8 76 69-147 173-250 (338)
174 PF03437 BtpA: BtpA family; I 20.6 4.9E+02 0.011 21.5 7.6 88 44-147 127-219 (254)
175 PRK14072 6-phosphofructokinase 20.6 3.3E+02 0.0071 24.0 6.2 55 70-130 188-247 (416)
176 KOG1637|consensus 20.5 96 0.0021 28.4 2.8 33 102-134 492-524 (560)
177 cd04732 HisA HisA. Phosphorib 20.5 2E+02 0.0044 22.2 4.5 47 79-128 152-198 (234)
178 KOG4382|consensus 20.1 75 0.0016 26.4 1.9 35 84-127 44-79 (276)
179 cd04734 OYE_like_3_FMN Old yel 20.1 2.1E+02 0.0046 24.2 4.8 48 79-129 234-294 (343)
No 1
>PLN02561 triosephosphate isomerase
Probab=100.00 E-value=1.3e-58 Score=377.80 Aligned_cols=148 Identities=51% Similarity=0.851 Sum_probs=138.8
Q ss_pred CCCccEEEEecccCCCHHHHHHHHHHhhcC-CC-CCCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccC
Q psy7461 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKG-PL-DPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELS 78 (149)
Q Consensus 1 m~rk~~i~~NwKmn~~~~~~~~~~~~~~~~-~~-~~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS 78 (149)
|.|||+|+||||||++.+++.+|++.+... .. ..+++|++||||++|..+.+.++++|.+|||||++.++||||||||
T Consensus 1 ~~rk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS 80 (253)
T PLN02561 1 MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQVAAQNCWVKKGGAFTGEIS 80 (253)
T ss_pred CCCccEEEEECCcCCCHHHHHHHHHHHHhcccCccCCeeEEEeCCHHHHHHHHHHhccCCeEEeccccCcCCCCccCcCC
Confidence 789999999999999999999999998653 22 2469999999999999998876557999999999999999999999
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
++||+|+||+||||||||||++|+|||+.|++|+++|+++||+|||||||++++|++|+|.+++.+|++.
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~ 150 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKA 150 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PTZ00333 triosephosphate isomerase; Provisional
Probab=100.00 E-value=3.7e-58 Score=375.59 Aligned_cols=148 Identities=50% Similarity=0.802 Sum_probs=139.2
Q ss_pred CCCccEEEEecccCCCHHHHHHHHHHhhcCCCC-CCeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCcccccC
Q psy7461 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELS 78 (149)
Q Consensus 1 m~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~-~~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS 78 (149)
|||||+|++|||||++.+++.+|++.+.....+ .++++++||||++|..+.+.++ +++.+|||||++.+.||||||||
T Consensus 2 ~~~k~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~v~v~i~P~~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS 81 (255)
T PTZ00333 2 MKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKNFKISSQNVSLTGSGAFTGEIS 81 (255)
T ss_pred CCCCeEEEEEcccccCHHHHHHHHHHHHhhccccCCeeEEEECCHHHHHHHHHHhcCCCeeEEccccccccCCCccCcCC
Confidence 478899999999999999999999998765444 5699999999999999988775 48999999999999999999999
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
|+||+|+||+||||||||||++|+|||++|++|+++|+++||+|||||||++++|++|++.++|.+|++.
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~ 151 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEA 151 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864
No 3
>PRK14567 triosephosphate isomerase; Provisional
Probab=100.00 E-value=8e-58 Score=372.97 Aligned_cols=145 Identities=34% Similarity=0.613 Sum_probs=135.9
Q ss_pred ccEEEEecccCCCHHHHHHHHHHhhcCCCC-CCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHHH
Q psy7461 4 KFWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAML 82 (149)
Q Consensus 4 k~~i~~NwKmn~~~~~~~~~~~~~~~~~~~-~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mL 82 (149)
||+|+||||||++.+++.+|++.+...... .+++|++||||++|..+.+.+.+++.+|||||++.+.||||||||++||
T Consensus 2 ~~~v~gNWKMn~~~~~~~~~~~~~~~~~~~~~~~~v~vaP~~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGEvS~~mL 81 (253)
T PRK14567 2 QKLIMGNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARML 81 (253)
T ss_pred CeEEEEECCcCCCHHHHHHHHHHHHhhccCCCCcEEEEeCCHHHHHHHHHHhcCCCEEEccccccccCCCccCcCCHHHH
Confidence 778999999999999999999998654333 4689999999999999887765679999999999999999999999999
Q ss_pred HhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 83 VDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 83 kd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.+++.+||+.
T Consensus 82 kd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~ 147 (253)
T PRK14567 82 EDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSL 147 (253)
T ss_pred HHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999964
No 4
>PRK15492 triosephosphate isomerase; Provisional
Probab=100.00 E-value=6.9e-58 Score=374.86 Aligned_cols=147 Identities=30% Similarity=0.453 Sum_probs=136.3
Q ss_pred CCccEEEEecccCCCHHHHHHHHHHhhcCC---C-CCCeEEEEecchhhHHHHhhhCC-----CCeeeeecccccCCCCC
Q psy7461 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGP---L-DPKVEVVVGVPAIYLEYAKCLLP-----SNVAPAAQNCYKVPKGA 72 (149)
Q Consensus 2 ~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~---~-~~~~~v~i~P~~~~L~~~~~~~~-----~~i~igAQnv~~~~~Ga 72 (149)
||||+|+||||||++.+++.+|++.+.... . ..++++++||||++|..+.+.+. +++.+|||||++.++||
T Consensus 1 Mrk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~P~~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga 80 (260)
T PRK15492 1 MKKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIPHDHPIIIGAQNMNPNDNGQ 80 (260)
T ss_pred CCCCEEEEECCcCCCHHHHHHHHHHHHhhhhhcccCCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCC
Confidence 499999999999999999999999985531 1 24689999999999999887652 47999999999999999
Q ss_pred cccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 73 FTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 73 ~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
|||||||+||+|+||+||||||||||++|+|||+.|++|+++|+++||+|||||||++++|++|++.+++.+||+.
T Consensus 81 ~TGevSa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~ 156 (260)
T PRK15492 81 FTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKI 156 (260)
T ss_pred ccCcCCHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999854
No 5
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=100.00 E-value=3.3e-57 Score=369.10 Aligned_cols=146 Identities=49% Similarity=0.706 Sum_probs=137.0
Q ss_pred CccEEEEecccCCCHHHHHHHHHHhhcCCCC-CCeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCcccccCHH
Q psy7461 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELSPA 80 (149)
Q Consensus 3 rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~-~~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS~~ 80 (149)
|||+|++|||||++..++.+|++.+.+.... .++++++||||++|..+.+.+. +++.+|||||++.+.||||||||++
T Consensus 1 ~~~~v~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~v~v~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~~ 80 (250)
T PRK00042 1 RKPIIAGNWKMNKTLAEAKALVEELKAALPDADGVEVAVAPPFTALASVKEALKGSNIKLGAQNVHPEDSGAFTGEISAE 80 (250)
T ss_pred CCcEEEEEcccCcCHHHHHHHHHHHHhhccccCCeeEEEECCHHHHHHHHHHhcCCCeEEEecccccccCCCccCccCHH
Confidence 6789999999999999999999998764333 4699999999999999988775 4899999999999999999999999
Q ss_pred HHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 81 MLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 81 mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
||+|+||+||||||||||++|+|||+.|++|+++|+++||+|||||||++++|++|+|.++|.+||..
T Consensus 81 mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~ 148 (250)
T PRK00042 81 MLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEA 148 (250)
T ss_pred HHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 6
>PRK14566 triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.1e-57 Score=369.97 Aligned_cols=147 Identities=39% Similarity=0.592 Sum_probs=136.8
Q ss_pred CCccEEEEecccCCCHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhhhCC-CC-------eeeeecccccCCCCCc
Q psy7461 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SN-------VAPAAQNCYKVPKGAF 73 (149)
Q Consensus 2 ~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~~~~-~~-------i~igAQnv~~~~~Ga~ 73 (149)
.|||+|+||||||++.+++.+|++.+.......+++|++||||++|..+.+.++ ++ +.+|||||++.++|||
T Consensus 3 ~rk~~i~gNWKmn~~~~~~~~~~~~l~~~~~~~~v~v~v~Pp~~~L~~~~~~~~~~~~~~~g~~i~v~AQnv~~~~~Ga~ 82 (260)
T PRK14566 3 LRRPMVAGNWKMNGSAALAQELFKKFAGKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNVSQHDFGAY 82 (260)
T ss_pred CCCeEEEEECCcCcCHHHHHHHHHHHHhhcCCCCeeEEEECCHHHHHHHHHHhccCcccccCceEEEEecccccccCCCc
Confidence 488999999999999999999999986643335699999999999999987663 24 9999999999999999
Q ss_pred ccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 74 TGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 74 TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
|||||++||+|+||+||||||||||.+|+|+|+.|++|+++|+++||+|||||||++++|++|+|.++|.+||+.
T Consensus 83 TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~ 157 (260)
T PRK14566 83 TGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDI 157 (260)
T ss_pred cCccCHHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854
No 7
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-57 Score=367.62 Aligned_cols=147 Identities=45% Similarity=0.663 Sum_probs=137.1
Q ss_pred CCccEEEEecccCCCHHHHHHHHHHhhcCCCCC--CeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCcccccC
Q psy7461 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP--KVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELS 78 (149)
Q Consensus 2 ~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~--~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS 78 (149)
||+|+|++|||||++..++.+|++.+....... +++++||||+++|..+.+.+. +++.+||||||+.++||||||||
T Consensus 1 ~~~~~v~gNwKmn~t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS 80 (251)
T COG0149 1 MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKVGAQNVDPEDSGAFTGEIS 80 (251)
T ss_pred CCCcEEEEEcccCcChHHHHHHHHHHhhcccccccceeEEEeCCHHHHHHHHHHhccCCceEEeccCCcccCCCccCcCC
Confidence 588899999999999999999999987654332 344999999999999998886 38999999999999999999999
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
++||+|+|++||||||||||.+|+|+|+.|++|+++|+++||+||+||||++++||+|+|.+||.+|+..
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~ 150 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAA 150 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864
No 8
>PLN02429 triosephosphate isomerase
Probab=100.00 E-value=1.4e-56 Score=374.52 Aligned_cols=147 Identities=50% Similarity=0.809 Sum_probs=137.8
Q ss_pred CCccEEEEecccCCCHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHH
Q psy7461 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAM 81 (149)
Q Consensus 2 ~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~m 81 (149)
.|||+|+||||||++.+++.+|++.+.......+++|+|||||++|..+.+.+.+++.+|||||++.+.||||||||++|
T Consensus 63 ~~k~~i~gNWKmn~t~~~~~~~~~~l~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~GayTGEVSa~m 142 (315)
T PLN02429 63 SGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQ 142 (315)
T ss_pred cCCEEEEEECCcCCCHHHHHHHHHHHHhcccCCCceEEEeCCHHHHHHHHHHhcCCCeEEecccCCCCCCCccCcCCHHH
Confidence 48899999999999999999999998663223469999999999999998877667999999999999999999999999
Q ss_pred HHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 82 LVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 82 Lkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
|+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|++.+++.+||+.
T Consensus 143 Lkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~ 209 (315)
T PLN02429 143 LKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKA 209 (315)
T ss_pred HHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 9
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=1.7e-56 Score=363.32 Aligned_cols=144 Identities=48% Similarity=0.680 Sum_probs=135.9
Q ss_pred cEEEEecccCCCHHHHHHHHHHhhcCCC-CCCeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCcccccCHHHH
Q psy7461 5 FWVGGNWKMNGNKKEIEGIVDFLKKGPL-DPKVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELSPAML 82 (149)
Q Consensus 5 ~~i~~NwKmn~~~~~~~~~~~~~~~~~~-~~~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS~~mL 82 (149)
|+|++|||||++.+++.+|++.+..... ..++++++||||++|..+.+.++ +++.+|||||++.+.||||||||++||
T Consensus 1 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~mL 80 (242)
T cd00311 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEML 80 (242)
T ss_pred CEEEEECCcccCHHHHHHHHHHHHhhccccCCceEEEECCHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHHH
Confidence 5899999999999999999999977654 35799999999999999988775 479999999999999999999999999
Q ss_pred HhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 83 VDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 83 kd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.+++.+|+..
T Consensus 81 ~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~ 146 (242)
T cd00311 81 KDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAA 146 (242)
T ss_pred HHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999853
No 10
>PRK14565 triosephosphate isomerase; Provisional
Probab=100.00 E-value=2e-56 Score=361.87 Aligned_cols=144 Identities=37% Similarity=0.574 Sum_probs=135.1
Q ss_pred ccEEEEecccCCCHHHHHHHHHHhhcCCC--CCCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHH
Q psy7461 4 KFWVGGNWKMNGNKKEIEGIVDFLKKGPL--DPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAM 81 (149)
Q Consensus 4 k~~i~~NwKmn~~~~~~~~~~~~~~~~~~--~~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~m 81 (149)
||+|++|||||++.+++.+|++.+..... ..++++++||||++|..+.+.. +++.+|||||++.++||||||||++|
T Consensus 2 ~~~v~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~v~v~iaP~~~~l~~~~~~~-~~i~vgAQnv~~~~~Ga~TGevS~~m 80 (237)
T PRK14565 2 SFLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECN-PNIKLGAQNCFYGSSGGYTGEISAKM 80 (237)
T ss_pred CcEEEEECccccCHHHHHHHHHHHHhhccccCCCceEEEECCHHHHHHHHHhc-CCceEEecccccccCCCccCccCHHH
Confidence 78999999999999999999999876443 2569999999999999988753 57999999999999999999999999
Q ss_pred HHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 82 LVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 82 Lkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
|+|+||+||||||||||++|+|||+.|++|+++|+++||+|||||||++++|+.|++.+++.+||+.
T Consensus 81 Lkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~ 147 (237)
T PRK14565 81 LKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSN 147 (237)
T ss_pred HHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 11
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=100.00 E-value=3.3e-57 Score=367.87 Aligned_cols=144 Identities=46% Similarity=0.703 Sum_probs=131.9
Q ss_pred cEEEEecccCCCHHHHHHHHHHhhcCCCC-CCeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCcccccCHHHH
Q psy7461 5 FWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELSPAML 82 (149)
Q Consensus 5 ~~i~~NwKmn~~~~~~~~~~~~~~~~~~~-~~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS~~mL 82 (149)
|+|++|||||++.+++.+|++.+.+...+ .+++++|||||++|..+.+.++ +++.+||||||+.+.||||||||++||
T Consensus 1 kii~~NwKmn~~~~~~~~~~~~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~mL 80 (244)
T PF00121_consen 1 KIIIGNWKMNGTGEEALEFLKELLNAKLPNKDVEVVIAPPFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEML 80 (244)
T ss_dssp SEEEEEETBSGSHHHHHHHHHHHHHHHCHTTTEEEEEEESGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHHH
T ss_pred CEEEEehhhCcCHHHHHHHHHHHHhcccccCCeeEEEEecchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHHH
Confidence 68999999999999999999997654333 4799999999999999988874 689999999999999999999999999
Q ss_pred HhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 83 VDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 83 kd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
+|+||+||||||||||++|+|||++|++|+++|+++||+|||||||++++|++|++.++|.+||+.
T Consensus 81 ~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~ 146 (244)
T PF00121_consen 81 KDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKS 146 (244)
T ss_dssp HHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999964
No 12
>KOG1643|consensus
Probab=100.00 E-value=3.2e-56 Score=351.54 Aligned_cols=148 Identities=61% Similarity=1.018 Sum_probs=143.6
Q ss_pred CCCccEEEEecccCCCHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHH
Q psy7461 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPA 80 (149)
Q Consensus 1 m~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~ 80 (149)
|.||++|.||||||++.++..++++.|+....+.+++++|+||++||..+.+.+++.|.++||||+...+||||||||++
T Consensus 1 MarkffvgGNwKmngs~~s~~eii~~ln~a~~~~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS~~ 80 (247)
T KOG1643|consen 1 MARKFFVGGNWKMNGSKQSIKEIIKTLNAAKLPANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEISAE 80 (247)
T ss_pred CCcceEecccccccCcHHHHHHHHHHhhhccCCCCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccCHH
Confidence 78999999999999999999999999998777778999999999999999999988999999999999999999999999
Q ss_pred HHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 81 MLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 81 mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
||+|+|++|||+||||||++|+|+|+.|.+|++.||+.||.+|.||||+++|||+|+|.+|+.+||++
T Consensus 81 mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~a 148 (247)
T KOG1643|consen 81 MLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKA 148 (247)
T ss_pred HHHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 13
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=100.00 E-value=1.1e-55 Score=375.03 Aligned_cols=148 Identities=36% Similarity=0.476 Sum_probs=136.7
Q ss_pred CCCccEEEEecccCCCHHHHHHHHHHhhcCC---C-CCCeEEEEecchhhHHHHhhhCC-----CCeeeeecccccCCCC
Q psy7461 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGP---L-DPKVEVVVGVPAIYLEYAKCLLP-----SNVAPAAQNCYKVPKG 71 (149)
Q Consensus 1 m~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~---~-~~~~~v~i~P~~~~L~~~~~~~~-----~~i~igAQnv~~~~~G 71 (149)
|.|||+|+||||||++.+++.+|++.|.... . ..++++++||||++|..+.+.+. +++.+|||||++.+.|
T Consensus 1 ~~r~~~v~gNWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~G 80 (355)
T PRK14905 1 MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAASETGHPKIKIGAQNMNAKDKG 80 (355)
T ss_pred CCCceEEEEECCcCCCHHHHHHHHHHHHHhhhhccccCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCC
Confidence 6688999999999999999999999985432 1 24589999999999999887653 3799999999999999
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
||||||||+||+|+||+||||||||||++|+|+|+.|++|+++|+++||+|||||||++++|++|++.+++.+||+.
T Consensus 81 a~TGEVS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~ 157 (355)
T PRK14905 81 QFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKI 157 (355)
T ss_pred CccCcCCHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999964
No 14
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.9e-53 Score=382.64 Aligned_cols=147 Identities=46% Similarity=0.672 Sum_probs=137.8
Q ss_pred CCccEEEEecccCCCHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCcccccCHH
Q psy7461 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELSPA 80 (149)
Q Consensus 2 ~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS~~ 80 (149)
||+|+|++|||||++.+++.+|++.+.....+.+.+++|||||++|..+.+.+. +++.+|||||++.++||||||||++
T Consensus 396 Mrk~~i~gNWKMn~~~~~~~~~~~~l~~~~~~~~~~v~v~Pp~~~L~~~~~~l~~~~i~vgAQnv~~~~~GA~TGEVSa~ 475 (645)
T PRK13962 396 PRKPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQAEVVVCPPFTALPSVKEAVDGSNIKLGAQNVFYEEKGAYTGEISGP 475 (645)
T ss_pred CCCcEEEEECCcCcCHHHHHHHHHHHHhhccCCCCeEEEECCHHHHHHHHHHhcCCCeEEEcccccccccCCccCcCCHH
Confidence 589999999999999999999999987654334569999999999999988774 4899999999999999999999999
Q ss_pred HHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461 81 MLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148 (149)
Q Consensus 81 mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~ 148 (149)
||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.+++.+||+.
T Consensus 476 mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~ 543 (645)
T PRK13962 476 MLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKA 543 (645)
T ss_pred HHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=100.00 E-value=4.6e-46 Score=295.96 Aligned_cols=117 Identities=34% Similarity=0.435 Sum_probs=107.2
Q ss_pred EEEEecc-cCCCHHHHHHHHHHhhcCCCC-CCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHHHH
Q psy7461 6 WVGGNWK-MNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLV 83 (149)
Q Consensus 6 ~i~~NwK-mn~~~~~~~~~~~~~~~~~~~-~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLk 83 (149)
+|++||| ||++..+...|+..+...... .++++++||||++|..+.+.++ +.+|||||++.++||||||||++||+
T Consensus 1 ~i~~NwK~mn~~~~~~~~~~~~~~~~~~~~~~~~v~v~Pp~~~L~~~~~~~~--i~vgAQn~~~~~~Ga~TGevS~~mLk 78 (205)
T TIGR00419 1 LVIGNWKTYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKREVE--IPVYAQHVDAVLSGAHTGEISAEMLK 78 (205)
T ss_pred CEEEEhhhcCCCHHHHHHHHHHHHhhccccCCcEEEEECCHHHHHHHHHhcC--ceEEecccccccCCCccCcCCHHHHH
Confidence 5789999 999999999999888654333 5689999999999999988663 99999999999999999999999999
Q ss_pred hcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCC
Q psy7461 84 DVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128 (149)
Q Consensus 84 d~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE 128 (149)
|+||+|||||||||| |+||| |++|+++|+++||+|||||..
T Consensus 79 d~G~~~viiGHSERR--f~Etd--i~~Kv~~a~~~gl~~IvCi~~ 119 (205)
T TIGR00419 79 DIGAKGTLINHSERR--MKLAD--IEKKIARLKELGLTSVVCTNN 119 (205)
T ss_pred HcCCCEEEECcccCC--CCccH--HHHHHHHHHHCCCEEEEEEHH
Confidence 999999999999999 99999 999999999999999999933
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.6e-35 Score=236.58 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=111.7
Q ss_pred CCccEEEEecccCC--CHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCH
Q psy7461 2 SRKFWVGGNWKMNG--NKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSP 79 (149)
Q Consensus 2 ~rk~~i~~NwKmn~--~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~ 79 (149)
||||+|++|||||+ +.+++.+|++.+.+.....++++++|||+++|..+.+.. +++++|||+++.+.|+||||+|+
T Consensus 1 m~~~~~~~n~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~v~~~~--~i~v~aq~~~~~~~G~~tg~~~~ 78 (223)
T PRK04302 1 MKYPIILVNFKTYPEATGKDALEIAKAAEKVSKETGVRIAVAPQALDIRRVAEEV--DIPVYAQHVDPVEPGSHTGHILP 78 (223)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHhccccCCCEEEEECCHHHHHHHHHhc--CCeEEeccCCCCCCCCchhhhHH
Confidence 48899999999999 689999999988774333568999999999999988764 68999999999999999999999
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 80 AMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 80 ~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
+||+++|+++||+||||||.+|+| +++|++.|+++||.||+|+||..+
T Consensus 79 ~~l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~~~~ 126 (223)
T PRK04302 79 EAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNNPET 126 (223)
T ss_pred HHHHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCCHHH
Confidence 999999999999999999999875 788899999999999999999543
No 17
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.15 E-value=1.7 Score=34.24 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhhhCCCCeee---eecccccCC--CCCcccccCHHHHHhcCCCEEEe
Q psy7461 18 KEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP---AAQNCYKVP--KGAFTGELSPAMLVDVGIDWVIL 92 (149)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~~~~~~i~i---gAQnv~~~~--~Ga~TGeiS~~mLkd~G~~~vii 92 (149)
....++++.+.+ .++..+...++.++..+.+.. .+++ ..++....+ -|+|+.++ +++++.|++++++
T Consensus 27 ~~i~~~a~~~~~----~G~~~~~~~~~~~~~~i~~~~--~iPil~~~~~~~~~~~~~ig~~~~~~--~~a~~aGad~I~~ 98 (219)
T cd04729 27 EIMAAMALAAVQ----GGAVGIRANGVEDIRAIRARV--DLPIIGLIKRDYPDSEVYITPTIEEV--DALAAAGADIIAL 98 (219)
T ss_pred HHHHHHHHHHHH----CCCeEEEcCCHHHHHHHHHhC--CCCEEEEEecCCCCCCceeCCCHHHH--HHHHHcCCCEEEE
Confidence 345555555443 234444457888888877653 3443 357764222 36666544 8999999999999
Q ss_pred cccccccccCCChHHHHHHHHHHHHCC-CeEEEEeC
Q psy7461 93 GHSERRNVFGEPDSLIAEKVAHALETG-LNVVACIG 127 (149)
Q Consensus 93 GHSERR~~~~Etd~~i~~Kv~~al~~g-l~pIlCiG 127 (149)
.+++++..-+|..+.+ ++.+.+.+ +..++++-
T Consensus 99 ~~~~~~~p~~~~~~~~---i~~~~~~g~~~iiv~v~ 131 (219)
T cd04729 99 DATDRPRPDGETLAEL---IKRIHEEYNCLLMADIS 131 (219)
T ss_pred eCCCCCCCCCcCHHHH---HHHHHHHhCCeEEEECC
Confidence 9999875433344433 56666666 76666654
No 18
>PLN02591 tryptophan synthase
Probab=87.86 E-value=0.97 Score=37.15 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=37.1
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEe-CCCHHHH
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI-GEKLEER 133 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCi-GE~~e~r 133 (149)
.+.+++.|++++||= ...+.|.++. ...|.++||.+|.|| -.+.++|
T Consensus 99 ~~~~~~aGv~Gviip----DLP~ee~~~~----~~~~~~~gl~~I~lv~Ptt~~~r 146 (250)
T PLN02591 99 MATIKEAGVHGLVVP----DLPLEETEAL----RAEAAKNGIELVLLTTPTTPTER 146 (250)
T ss_pred HHHHHHcCCCEEEeC----CCCHHHHHHH----HHHHHHcCCeEEEEeCCCCCHHH
Confidence 688999999999997 4566555555 689999999999999 4444555
No 19
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=87.39 E-value=0.94 Score=37.30 Aligned_cols=51 Identities=25% Similarity=0.258 Sum_probs=39.3
Q ss_pred ccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEE-EeCCCHHHHh
Q psy7461 76 ELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVA-CIGEKLEERE 134 (149)
Q Consensus 76 eiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIl-CiGE~~e~r~ 134 (149)
|--.++++++|++++||- +..+.|..+. ++.|.++||.+|. |.-.+.++|-
T Consensus 107 e~f~~~~~~aGvdGviip----DLp~ee~~~~----~~~~~~~gl~~I~lvap~t~~eri 158 (258)
T PRK13111 107 ERFAADAAEAGVDGLIIP----DLPPEEAEEL----RAAAKKHGLDLIFLVAPTTTDERL 158 (258)
T ss_pred HHHHHHHHHcCCcEEEEC----CCCHHHHHHH----HHHHHHcCCcEEEEeCCCCCHHHH
Confidence 334899999999999995 5556444444 6899999999998 8888766553
No 20
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=86.93 E-value=1.3 Score=36.33 Aligned_cols=53 Identities=34% Similarity=0.394 Sum_probs=43.8
Q ss_pred CCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCH
Q psy7461 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKL 130 (149)
Q Consensus 69 ~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 130 (149)
-.|+|+.|.-.+|+++.|+++++-=-| |.+ -...|+.+|.+.|+..|+ |.-+.
T Consensus 173 m~gPfs~e~n~aL~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv-I~RP~ 225 (248)
T PRK08057 173 LRGPFSLELERALLRQHRIDVVVTKNS------GGA--GTEAKLEAARELGIPVVM-IARPA 225 (248)
T ss_pred eeCCCCHHHHHHHHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE-EeCCC
Confidence 459999999999999999999997555 544 678899999999998666 55543
No 21
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=79.08 E-value=5.4 Score=30.56 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=41.5
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|.|.|....||+.|+++|+|-=+|...+. |.....-++.|.++||..
T Consensus 7 ~~q~~id~~~~k~~gi~fviiKateG~~y~---D~~~~~~~~~a~~aGl~~ 54 (184)
T cd06525 7 NWQGNINFNAVKDSGVEVVYIKATEGTTFV---DSYFNENYNGAKAAGLKV 54 (184)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEecCCCccc---CHhHHHHHHHHHHCCCce
Confidence 678899999999999999999998876554 678888899999999863
No 22
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.69 E-value=3.7 Score=33.77 Aligned_cols=54 Identities=37% Similarity=0.444 Sum_probs=41.7
Q ss_pred CCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCH
Q psy7461 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKL 130 (149)
Q Consensus 69 ~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 130 (149)
..|+|+.|.--+|+++.|+++++.=-| |++ --...|+.+|++.|+.+|+ |.-+.
T Consensus 180 ~~gPfs~e~n~al~~~~~i~~lVtK~S------G~~-Gg~~eKi~AA~~lgi~viv-I~RP~ 233 (256)
T TIGR00715 180 MRGPFSEELEKALLREYRIDAVVTKAS------GEQ-GGELEKVKAAEALGINVIR-IARPQ 233 (256)
T ss_pred EeCCCCHHHHHHHHHHcCCCEEEEcCC------CCc-cchHHHHHHHHHcCCcEEE-EeCCC
Confidence 569999999999999999999996333 221 1356789999999998766 55553
No 23
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=73.13 E-value=18 Score=29.41 Aligned_cols=63 Identities=25% Similarity=0.379 Sum_probs=41.0
Q ss_pred CCcccccCHHHHHhcCCCEEEec---cccc-cccc-CCChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHh
Q psy7461 71 GAFTGELSPAMLVDVGIDWVILG---HSER-RNVF-GEPDSLIAEKVAHALETGLNV----VACIGEKLEERE 134 (149)
Q Consensus 71 Ga~TGeiS~~mLkd~G~~~viiG---HSER-R~~~-~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~ 134 (149)
|.-|-| ..+.|+++|++.+.+| +.|- +... +.+-+...+-++.+.++|+.+ |+..||+.++..
T Consensus 119 g~~~~e-~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~ 190 (296)
T TIGR00433 119 GLLDPE-QAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRI 190 (296)
T ss_pred CCCCHH-HHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHH
Confidence 544433 3566789999998776 2221 1122 235566667788999999985 566788877765
No 24
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.38 E-value=15 Score=29.55 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=35.2
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
...+++.|++++++ | .+.-|+.+....=++.+.++|+.+++|+.-+
T Consensus 94 i~~~~~~Gadgvii-~----dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 94 LNMARDVGADGVLF-P----DLLIDYPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred HHHHHHcCCCEEEE-C----CCCCCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 67899999999999 3 1112444455566799999999999999874
No 25
>PRK08508 biotin synthase; Provisional
Probab=70.57 E-value=15 Score=30.20 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=43.6
Q ss_pred ccccCHHHH---HhcCCCEEEecccccccccC-----CChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhc
Q psy7461 74 TGELSPAML---VDVGIDWVILGHSERRNVFG-----EPDSLIAEKVAHALETGLNV----VACIGEKLEEREA 135 (149)
Q Consensus 74 TGeiS~~mL---kd~G~~~viiGHSERR~~~~-----Etd~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~~ 135 (149)
.|..+.+.| +++|++.+-+|.-=++.+|. .+-+.+-+-++.|.+.|+.+ |+=.||+.++|..
T Consensus 97 ~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~ 170 (279)
T PRK08508 97 NGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRIS 170 (279)
T ss_pred CCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHH
Confidence 466666655 55699888877544554443 33455555667799999987 8889999999874
No 26
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=69.17 E-value=10 Score=32.69 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=46.8
Q ss_pred ccCHHHHHhcCCCEEEecccccccccC-----CChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHh
Q psy7461 76 ELSPAMLVDVGIDWVILGHSERRNVFG-----EPDSLIAEKVAHALETGLNV----VACIGEKLEERE 134 (149)
Q Consensus 76 eiS~~mLkd~G~~~viiGHSERR~~~~-----Etd~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~ 134 (149)
+=.++.|+|+|+++.-.++==.|.+|. .|-+.--.-++.+.++||.+ |+=.||+.++|-
T Consensus 144 ~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri 211 (335)
T COG0502 144 EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRA 211 (335)
T ss_pred HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHH
Confidence 335677899999998877766666664 57777778889999999975 788899999875
No 27
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=67.82 E-value=12 Score=30.72 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=66.7
Q ss_pred EecccCCCHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhh-h----------CCC-Ceeeeeccccc-CCCCCccc
Q psy7461 9 GNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKC-L----------LPS-NVAPAAQNCYK-VPKGAFTG 75 (149)
Q Consensus 9 ~NwKmn~~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~-~----------~~~-~i~igAQnv~~-~~~Ga~TG 75 (149)
-||..-.+.+++.+++..+.. -.|++.--.-.|..+.. . ++. ....|=+.-+. ...|+|+=
T Consensus 110 ~~~~~v~~~~eA~~~l~~~~~------~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~ 183 (249)
T PF02571_consen 110 DNWHYVDSYEEAAELLKELGG------GRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSK 183 (249)
T ss_pred CeEEEeCCHHHHHHHHhhcCC------CCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCH
Confidence 378877888888887755431 13445444444444422 1 110 11112111111 24799999
Q ss_pred ccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCH
Q psy7461 76 ELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKL 130 (149)
Q Consensus 76 eiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 130 (149)
|.--+|+++.|+++++-=-| |.+ -...|+.+|++.|+.+|+ |.-+.
T Consensus 184 e~n~al~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv-I~RP~ 229 (249)
T PF02571_consen 184 ELNRALFRQYGIDVLVTKES------GGS--GFDEKIEAARELGIPVIV-IKRPP 229 (249)
T ss_pred HHHHHHHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE-EeCCC
Confidence 99999999999999997333 333 567899999999998766 44443
No 28
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=66.50 E-value=11 Score=24.93 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=38.4
Q ss_pred CCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 69 ~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
..+...|.-.+..|.+.||+.+|.|+=-.+ . .....+.|+.++.+.+.+.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~iG~~--------~----~~~L~~~gI~v~~~~~~~i~ 86 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGIGEG--------A----FRALKEAGIKVYQGAGGDIE 86 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCSCHH--------H----HHHHHHTTSEEEESTSSBHH
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCCCHH--------H----HHHHHHCCCEEEEcCCCCHH
Confidence 344577888899999999999999985433 2 36677899999988555543
No 29
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=64.72 E-value=19 Score=24.28 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=34.1
Q ss_pred ccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 74 TGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 74 TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
.|.--+.+|++.||+.+|.|+--.+. .....+.|+.++...+++.+
T Consensus 51 ~~~~~~~~l~~~~v~~vi~~~iG~~~------------~~~l~~~gI~v~~~~~~~i~ 96 (103)
T cd00851 51 AGGKAAEFLADEGVDVVIVGGIGPRA------------LNKLRNAGIKVYKGAEGTVE 96 (103)
T ss_pred CchHHHHHHHHcCCCEEEeCCCCcCH------------HHHHHHCCCEEEEcCCCCHH
Confidence 36788899999999999998744332 24566789999977764433
No 30
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=64.14 E-value=18 Score=27.86 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=39.6
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCe
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~ 121 (149)
.|.|.|....||+.|+++|+|==+|...+ .|+....-++.|.++||.
T Consensus 10 ~~q~~id~~~vk~~gi~fviiKateG~~~---~D~~~~~~~~~a~~~Gl~ 56 (191)
T cd06413 10 HHQGDIDWARVRAQGVSFAYIKATEGGDH---VDKRFAENWRGARAAGLP 56 (191)
T ss_pred CCCCCcCHHHHHhCCCcEEEEEEcCCCCc---cCHHHHHHHHHHHHcCCc
Confidence 47789999999999999999988877654 567777788999999986
No 31
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=60.52 E-value=33 Score=26.69 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=45.6
Q ss_pred chhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 43 PAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 43 ~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.+-.+..+.+.. +++|-.++ + .+=...++.+.++|++++++|.+-... +.+..=++.+...|+.+
T Consensus 60 ~~~~~~~i~~~v--~iPi~~~~------~-i~~~~~v~~~~~~Gad~v~l~~~~~~~------~~~~~~~~~~~~~g~~~ 124 (217)
T cd00331 60 SLEDLRAVREAV--SLPVLRKD------F-IIDPYQIYEARAAGADAVLLIVAALDD------EQLKELYELARELGMEV 124 (217)
T ss_pred CHHHHHHHHHhc--CCCEEECC------e-ecCHHHHHHHHHcCCCEEEEeeccCCH------HHHHHHHHHHHHcCCeE
Confidence 445666666553 34444343 1 111125788999999999999985432 34444467778889999
Q ss_pred EEEeCCC
Q psy7461 123 VACIGEK 129 (149)
Q Consensus 123 IlCiGE~ 129 (149)
++++-..
T Consensus 125 ~v~v~~~ 131 (217)
T cd00331 125 LVEVHDE 131 (217)
T ss_pred EEEECCH
Confidence 8888643
No 32
>PLN02389 biotin synthase
Probab=59.78 E-value=37 Score=29.45 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCCeEEEE-----ec-c--hhhHHHHhhhCC-CCeeeeecccccCCCCCcccccCHHHHHhc
Q psy7461 15 GNKKEIEGIVDFLKKGPLDPKVEVVV-----GV-P--AIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELSPAMLVDV 85 (149)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~v~i-----~P-~--~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~ 85 (149)
.+.+++.+.++.+.+.. -..+-++. .. | +.++..+.+.++ ..+.+. ...|- .-+=....||++
T Consensus 116 Ls~EeIl~~a~~~~~~G-~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~------~s~G~-l~~E~l~~LkeA 187 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAG-STRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVC------CTLGM-LEKEQAAQLKEA 187 (379)
T ss_pred CCHHHHHHHHHHHHHcC-CCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEE------ECCCC-CCHHHHHHHHHc
Confidence 35677777766654321 12222321 22 2 344444444432 234333 23453 333346678889
Q ss_pred CCCEEEeccc--c--ccccc-CCChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhc
Q psy7461 86 GIDWVILGHS--E--RRNVF-GEPDSLIAEKVAHALETGLNV----VACIGEKLEEREA 135 (149)
Q Consensus 86 G~~~viiGHS--E--RR~~~-~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~~ 135 (149)
|++.+-++.- + -|++. ..+-+..-+-++.|.+.|+.+ |+=.||+.++|-.
T Consensus 188 Gld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~ 246 (379)
T PLN02389 188 GLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVG 246 (379)
T ss_pred CCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHH
Confidence 9999877764 2 12221 346677777889999999965 5566899988764
No 33
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=59.55 E-value=23 Score=27.46 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=39.8
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|.|.|....+|..|+++|||==+|--.+ .|.....-++.|.++||.+
T Consensus 8 ~~qg~idw~~vk~~g~~fviiKateG~~~---~D~~~~~n~~~A~~aGl~~ 55 (199)
T cd06412 8 GHQGSVDWSGAAANGARFAYVKATEGTSY---TNPRFSSQYNGAYNAGLIR 55 (199)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEEecCCCc---cChhHHHHHHHHHHcCCce
Confidence 47789999999999999999988876544 4677788889999999854
No 34
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=59.00 E-value=12 Score=28.43 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=40.7
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE-EEEeC
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV-VACIG 127 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p-IlCiG 127 (149)
.|.|++....||+.|+++|+|-=+|-..+ .|+....-++.|.++||.. ++-..
T Consensus 5 ~~qg~~dw~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~G~Yhf~ 58 (181)
T PF01183_consen 5 HYQGDIDWQKVKAAGIDFVIIKATEGTSY---VDPYFESNIKNAKAAGLPVGAYHFA 58 (181)
T ss_dssp GGGSS-SHHHHHHTTEEEEEEEEEETTTE---E-TTHHHHHHHHHHTTSEEEEEEE-
T ss_pred CCCCccCHHHHHHCCCCEEEEEeeeCCCe---ecchHHHHHHHHHHcCCeEEEEEEe
Confidence 47899999999999999999988887655 4556666789999999986 34333
No 35
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=58.78 E-value=80 Score=25.17 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=42.6
Q ss_pred CCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccc----cCHHHHHhcCCCEEEeccccccccc-CCChHHH
Q psy7461 34 PKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGE----LSPAMLVDVGIDWVILGHSERRNVF-GEPDSLI 108 (149)
Q Consensus 34 ~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGe----iS~~mLkd~G~~~viiGHSERR~~~-~Etd~~i 108 (149)
.+.+.++|++.. +..+.+.....+..-+-.+.+ .|.-.|+ .++....+.|++++++| |..+ +++-...
T Consensus 147 ~g~dgvv~~~~~-~~~ir~~~~~~~~~v~pGI~~--~g~~~~dq~~~~~~~~ai~~Gad~iVvG----R~I~~a~dP~~~ 219 (230)
T PRK00230 147 AGLDGVVCSAQE-AAAIREATGPDFLLVTPGIRP--AGSDAGDQKRVMTPAQAIAAGSDYIVVG----RPITQAADPAAA 219 (230)
T ss_pred cCCeEEEeChHH-HHHHHhhcCCceEEEcCCcCC--CCCCcchHHHHhCHHHHHHcCCCEEEEC----CcccCCCCHHHH
Confidence 356778887654 455555543444444444542 2222233 25777778999999999 3333 3444555
Q ss_pred HHHHHHHH
Q psy7461 109 AEKVAHAL 116 (149)
Q Consensus 109 ~~Kv~~al 116 (149)
.+++...+
T Consensus 220 a~~i~~~i 227 (230)
T PRK00230 220 YEAILAEI 227 (230)
T ss_pred HHHHHHHh
Confidence 55555443
No 36
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=58.17 E-value=26 Score=26.69 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=39.8
Q ss_pred CcccccCH-HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGELSP-AMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGeiS~-~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|.|.|.. ..+++.|+++|+|-=+|-..+ .|.....-++.|.++||..
T Consensus 7 ~~qg~id~~~~~~~~g~~fviikateG~~~---~D~~f~~n~~~a~~aGl~v 55 (177)
T cd06523 7 EWQGPINWDYDTLSKQLDLVIIRVQYGSNY---VDLKYKNNIKEFKKRGIPF 55 (177)
T ss_pred ccCCCCCHHHHHHhCCCCEEEEEEeCCCcc---cCHHHHHHHHHHHHcCCCe
Confidence 46788888 467789999999998886654 7788888999999999864
No 37
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=57.92 E-value=44 Score=27.02 Aligned_cols=71 Identities=15% Similarity=0.033 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHH---HhhhCCCCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEe
Q psy7461 16 NKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEY---AKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVIL 92 (149)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~---~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~vii 92 (149)
+.+++.+-++.+.+. +.+.+..|+...... +.+....++.+. ..+.+. .+|++.|+++|++.++.
T Consensus 158 ~~~eai~Ra~ay~~A----GAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~-----~~~~~~---~~~~~~l~~lG~~~v~~ 225 (243)
T cd00377 158 GLDEAIERAKAYAEA----GADGIFVEGLKDPEEIRAFAEAPDVPLNVN-----MTPGGN---LLTVAELAELGVRRVSY 225 (243)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEeCCCCCHHHHHHHHhcCCCCEEEE-----ecCCCC---CCCHHHHHHCCCeEEEE
Confidence 456666666665542 356666665534444 444332233322 112222 79999999999999999
Q ss_pred cccccc
Q psy7461 93 GHSERR 98 (149)
Q Consensus 93 GHSERR 98 (149)
|.+=-|
T Consensus 226 ~~~~~~ 231 (243)
T cd00377 226 GLALLR 231 (243)
T ss_pred ChHHHH
Confidence 986444
No 38
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=57.92 E-value=26 Score=26.97 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=39.7
Q ss_pred CcccccCHHH----HHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGELSPAM----LVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGeiS~~m----Lkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|.|.|.... +|+.|+++|+|-=+|--.+ .|.....-++.|.++||..
T Consensus 7 ~~qg~i~~~~~~~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~ 58 (194)
T cd06524 7 HYQGKIDWQKVKAKVKDSPVAFVFIKATEGVDI---VDPDFPTNWEGAKEAGIIR 58 (194)
T ss_pred CcCCCCChhhhhhhhhhcCccEEEEEecCCCCc---cChHHHHHHHHHHHcCCce
Confidence 5788888887 8999999999998887443 4677888899999999853
No 39
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=55.38 E-value=29 Score=26.80 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=37.6
Q ss_pred Cccccc---CHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGEL---SPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGei---S~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|.|.| ....+|..|+++|||-=+|-..+ .|.....-++.|.++||..
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikateG~~~---~D~~~~~n~~~A~~aGl~v 58 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLTEGTTY---RNPYAASQIANAKAAGLKV 58 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEcCCCCc---cChHHHHHHHHHHHCCCee
Confidence 467888 56789999999999987776433 4677778889999999853
No 40
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=55.34 E-value=36 Score=26.06 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=37.5
Q ss_pred HHHHHhcCCCEEEecccccc-cccCC-----------ChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 79 PAMLVDVGIDWVILGHSERR-NVFGE-----------PDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR-~~~~E-----------td~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
..+|+++|++++|+.=+=-+ ..+.- ....|..-+..|-+.||...+-++-+
T Consensus 26 ~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 26 FRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 46899999999998632211 12222 33588999999999999999888855
No 41
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.39 E-value=50 Score=26.95 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=35.6
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEE-EEeCCCHHHH
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVV-ACIGEKLEER 133 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pI-lCiGE~~e~r 133 (149)
.+.++++|++++|+= .+..+....-+..+.++|+.+| +|--.+..+|
T Consensus 108 ~~~~~~aGvdgviip--------Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~er 155 (256)
T TIGR00262 108 YAKCKEVGVDGVLVA--------DLPLEESGDLVEAAKKHGVKPIFLVAPNADDER 155 (256)
T ss_pred HHHHHHcCCCEEEEC--------CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHH
Confidence 778999999999984 3344555566789999999988 7777675554
No 42
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=54.13 E-value=36 Score=25.65 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=39.7
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCe
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~ 121 (149)
.|.|.+...-|++-|+++|+|-=+|--.+ .|.....-+..|.++||.
T Consensus 7 ~~q~~~~~~~~~~~g~~fviik~t~G~~~---~D~~~~~~~~~a~~aGl~ 53 (186)
T cd00599 7 SWQGSIDWNAVKAAGIDFVFIKATEGTTY---VDPKFATNRARARAAGLL 53 (186)
T ss_pred CCCCCCCHHHHHhCCCcEEEEEEeCCCCc---cChHHHHHHHHHHHCCCc
Confidence 57888999999999999999998887654 467777778999999975
No 43
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=53.88 E-value=25 Score=27.23 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=37.9
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|-|.|... ++..|+++|+|-=+|...+ .|.....-++.|.++||..
T Consensus 8 ~~qg~i~~~-~~~~g~~fviiKateG~~~---~d~~~~~n~~~A~~aGl~v 54 (196)
T cd06415 8 SYQGTDLTA-YGQAGAKFAIVKISEGTNY---VNPKASAQVSSAIANGKMT 54 (196)
T ss_pred hcCCcccHH-HHhCCCcEEEEEEcCCCcc---CCccHHHHHHHHHHCCCee
Confidence 567888776 9999999999998888754 4567777789999999853
No 44
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=52.71 E-value=32 Score=29.03 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHHHHhcCCCEEEe-----cccccccccCCC-hHHHHHHHHHHHHCCCeEEEEeCC
Q psy7461 79 PAMLVDVGIDWVIL-----GHSERRNVFGEP-DSLIAEKVAHALETGLNVVACIGE 128 (149)
Q Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~~~Et-d~~i~~Kv~~al~~gl~pIlCiGE 128 (149)
...+|++|++.|.+ -|.+++-.|+-+ +..+.+=++.|.++||-+|+..|-
T Consensus 30 l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 30 LQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 46789999988876 577777777655 467888899999999999998884
No 45
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=51.74 E-value=1.1e+02 Score=23.64 Aligned_cols=32 Identities=28% Similarity=0.567 Sum_probs=22.2
Q ss_pred HHHHHhcCCCEEEecccccccccCCCh-HHHHHHHHH
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPD-SLIAEKVAH 114 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd-~~i~~Kv~~ 114 (149)
+..+.+.|++++++| |-.|...| ....++++.
T Consensus 178 ~~~~~~aGad~iV~G----r~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 178 AADAIKAGADYVIVG----RSIYNAADPREAAKAINE 210 (215)
T ss_pred HHHHHHcCCCEEEEC----cccCCCCCHHHHHHHHHH
Confidence 778889999999999 67775433 343344443
No 46
>PRK08445 hypothetical protein; Provisional
Probab=51.41 E-value=33 Score=29.25 Aligned_cols=60 Identities=15% Similarity=0.002 Sum_probs=44.5
Q ss_pred ccCHHHHHhcCCCE-----EEeccccccccc---CCChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhc
Q psy7461 76 ELSPAMLVDVGIDW-----VILGHSERRNVF---GEPDSLIAEKVAHALETGLNV----VACIGEKLEEREA 135 (149)
Q Consensus 76 eiS~~mLkd~G~~~-----viiGHSERR~~~---~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~~ 135 (149)
+=....||++|++. ..+++.|-|+.+ .-|.+.--+-++.|.++|+.. |+=.||+.++|-.
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~ 215 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIE 215 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHH
Confidence 33578899999984 456666676644 456666567889999999975 6778999888764
No 47
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=51.20 E-value=42 Score=24.70 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=33.0
Q ss_pred CCCEEEecccccccc-cCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHh
Q psy7461 86 GIDWVILGHSERRNV-FGEPDSLIAEKVAHALETGLNVVACIGEKLEERE 134 (149)
Q Consensus 86 G~~~viiGHSERR~~-~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~ 134 (149)
.++++|+.+. +..| ..+-.+.+-+.++.+.+.|...|+|-|.+...++
T Consensus 7 DiDGTL~~~~-~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 7 DLDNTITLTE-NGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred eCCCCcccCC-CCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 4567776543 2222 2444556666677777999999999999987776
No 48
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=50.76 E-value=45 Score=25.59 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=40.6
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|.|.|....+|+.|+++|+|==+|...-=.-.|+....-++.|.++||..
T Consensus 8 ~~q~~id~~~~k~~g~~fviiKateG~~g~~~~D~~~~~~~~~A~~aGl~~ 58 (191)
T cd06414 8 EWQGDIDWKKVKASGVDFAIIRAGYGGYGELQEDKYFEENIKGAKAAGIPV 58 (191)
T ss_pred ccCCccCHHHHHhCCCCEEEEEEecCCCcccccCHHHHHHHHHHHHCCCce
Confidence 467789999999999999999877766400036788888999999999863
No 49
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=50.14 E-value=64 Score=26.31 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=53.2
Q ss_pred chhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 43 PAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 43 ~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
++-+|..+.+.. +++|-..|.- |=+.-....+++|++.+++.-+=.+ ++.+..=++.|.+.|+.+
T Consensus 99 ~~~~l~~v~~~v--~iPvl~kdfi-------~~~~qi~~a~~~GAD~VlLi~~~l~------~~~l~~li~~a~~lGl~~ 163 (260)
T PRK00278 99 SLEYLRAARAAV--SLPVLRKDFI-------IDPYQIYEARAAGADAILLIVAALD------DEQLKELLDYAHSLGLDV 163 (260)
T ss_pred CHHHHHHHHHhc--CCCEEeeeec-------CCHHHHHHHHHcCCCEEEEEeccCC------HHHHHHHHHHHHHcCCeE
Confidence 456677776654 3444545522 2223467788999999999988743 357777789999999999
Q ss_pred EEEeCCCHHH
Q psy7461 123 VACIGEKLEE 132 (149)
Q Consensus 123 IlCiGE~~e~ 132 (149)
++|+-+..|-
T Consensus 164 lvevh~~~E~ 173 (260)
T PRK00278 164 LVEVHDEEEL 173 (260)
T ss_pred EEEeCCHHHH
Confidence 9999876543
No 50
>KOG3076|consensus
Probab=49.77 E-value=42 Score=26.99 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=57.0
Q ss_pred CeEEEEecchhhHH--HHhhhCCCCeeeeecccccCCCCCcccccCHHHHHhcCCCEE---------------Eeccccc
Q psy7461 35 KVEVVVGVPAIYLE--YAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWV---------------ILGHSER 97 (149)
Q Consensus 35 ~~~v~i~P~~~~L~--~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~v---------------iiGHSER 97 (149)
++|++++.-|..|- .+.+.+++++ =|+|+.-.|+|-|--.-+|--|.|++++ ||=-++-
T Consensus 87 ~~d~v~lAG~M~iLs~~fl~~~~~~i----iNIHPaLlpaFkG~~a~k~Aleagv~~~GctvHfV~EevD~G~iI~q~~v 162 (206)
T KOG3076|consen 87 GTDLVCLAGYMRILSGEFLSQLPKRI----INIHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIEEVDTGPIIAQMAV 162 (206)
T ss_pred CCCEEEehhhHHHcCHHHHhhcccce----EecccccccccCCchHHHHHHHhccccccceEEEehhhccCCCceEEEee
Confidence 56888887765542 2333444453 5899999999999999999999987653 4555666
Q ss_pred ccccCCChHHHHHHHHHHH
Q psy7461 98 RNVFGEPDSLIAEKVAHAL 116 (149)
Q Consensus 98 R~~~~Etd~~i~~Kv~~al 116 (149)
|-..++|-+.+.+|+..+-
T Consensus 163 ~V~~~Dt~esl~qrv~~aE 181 (206)
T KOG3076|consen 163 PVIPGDTLESLEQRVHDAE 181 (206)
T ss_pred eecCCCCHHHHHHHHHHHH
Confidence 7788888889888887653
No 51
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=48.24 E-value=28 Score=29.26 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=48.1
Q ss_pred CeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHH
Q psy7461 35 KVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA 113 (149)
Q Consensus 35 ~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~ 113 (149)
+.|.++.|....+..+.+... -+.++-+ |+. .|.-|+.+|.+.|+++|++.++.|.+=-|.... .+.+-..
T Consensus 179 GAD~ifi~~~~~~~~i~~~~~~~~~Pl~~-n~~---~~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa~~----a~~~~~~ 250 (292)
T PRK11320 179 GADMIFPEAMTELEMYRRFADAVKVPILA-NIT---EFGATPLFTTEELASAGVAMVLYPLSAFRAMNK----AAENVYE 250 (292)
T ss_pred CCCEEEecCCCCHHHHHHHHHhcCCCEEE-Eec---cCCCCCCCCHHHHHHcCCcEEEEChHHHHHHHH----HHHHHHH
Confidence 456777776666665543321 1222222 222 244588899999999999999999987665542 3334445
Q ss_pred HHHHCCCe
Q psy7461 114 HALETGLN 121 (149)
Q Consensus 114 ~al~~gl~ 121 (149)
..++.|-.
T Consensus 251 ~l~~~g~~ 258 (292)
T PRK11320 251 AIRRDGTQ 258 (292)
T ss_pred HHHHcCCc
Confidence 55556653
No 52
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=48.20 E-value=30 Score=26.65 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=38.3
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|.|.|-..-||+.|+++|+|==.|-..+ .|.....-++.|.++||..
T Consensus 8 ~~q~~i~w~~vk~~g~~fv~ikateg~~~---~D~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 8 QPTSVSTFQCLKNNGYSFAIIRAYRSNGS---FDPNSVTNIKNARAAGLST 55 (196)
T ss_pred cccChhhhhHHHhCCceEEEEEEEccCCc---cChHHHHHHHHHHHcCCcc
Confidence 46789999999999999999955554332 5788888889999999874
No 53
>KOG4131|consensus
Probab=48.14 E-value=95 Score=25.94 Aligned_cols=43 Identities=28% Similarity=0.436 Sum_probs=31.0
Q ss_pred cccccCHHHHH---hcCCCEEEeccccccc-ccCCChHHHHHHHHHHHHCC
Q psy7461 73 FTGELSPAMLV---DVGIDWVILGHSERRN-VFGEPDSLIAEKVAHALETG 119 (149)
Q Consensus 73 ~TGeiS~~mLk---d~G~~~viiGHSERR~-~~~Etd~~i~~Kv~~al~~g 119 (149)
||||-|--.+- ..|++..+.+||--.+ +++ ++..|+..-++..
T Consensus 211 ~TGEmSHH~vL~~~~~g~sVilc~HSNtERgfL~----d~~~kl~~~l~~~ 257 (272)
T KOG4131|consen 211 ITGEMSHHDVLDAAANGISVILCEHSNTERGFLS----DLCDKLASSLEEE 257 (272)
T ss_pred EeccccHHHHHHHHHcCCeEEEecCCCccchhHH----HHHHHHHhhCCcc
Confidence 89999977664 5688999999997644 444 3666776666555
No 54
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=47.92 E-value=49 Score=25.79 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=40.1
Q ss_pred CcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 72 AFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 72 a~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.|-|.|-..-+++-|+++|+|-=+|-..+. |.....-.+.|.++||..
T Consensus 15 ~~qg~IDw~~v~~~gi~Fv~iKATEG~~~~---D~~f~~n~~~A~~~Gl~v 62 (190)
T cd06419 15 QDDGYIDFNSLQSNGISFVYLRATQGASYF---DDNFLSNFSRAQGTGLSV 62 (190)
T ss_pred CCCCccCHHHHHhCCCeEEEEEeecCCCcc---ChhHHHHHHHHHHCCCCE
Confidence 456999999999999999999988877654 567777788888888874
No 55
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=47.79 E-value=12 Score=24.90 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=32.2
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
+.-|++.|+ |..+..++..+.+|++.|...|..-++.||+...
T Consensus 22 ~~~L~~~gi----------~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 22 ANKLRKAGI----------RVELDDSDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp HHHHHHTTS----------EEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred HHHHHHCCC----------EEEEECCCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 345666663 2334446668899999999999999999997643
No 56
>PRK07360 FO synthase subunit 2; Reviewed
Probab=47.52 E-value=45 Score=28.61 Aligned_cols=60 Identities=25% Similarity=0.109 Sum_probs=41.6
Q ss_pred ccCHHHHHhcCCCEEEeccccc-----c-cccC--CChHHHHHHHHHHHHCCCe----EEEEeCCCHHHHhc
Q psy7461 76 ELSPAMLVDVGIDWVILGHSER-----R-NVFG--EPDSLIAEKVAHALETGLN----VVACIGEKLEEREA 135 (149)
Q Consensus 76 eiS~~mLkd~G~~~viiGHSER-----R-~~~~--Etd~~i~~Kv~~al~~gl~----pIlCiGE~~e~r~~ 135 (149)
+=....|+|+|++...-+..|. | .++. .+.+.--+-++.|.+.|+. -|+=.||+.++|-.
T Consensus 163 ~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~ 234 (371)
T PRK07360 163 EEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRID 234 (371)
T ss_pred HHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHH
Confidence 3357899999999886444442 3 2333 2555666778999999995 36668899988763
No 57
>PRK14072 6-phosphofructokinase; Provisional
Probab=46.86 E-value=36 Score=30.01 Aligned_cols=50 Identities=12% Similarity=0.025 Sum_probs=37.1
Q ss_pred HHhcCCCEEEecccccccc--cCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHh
Q psy7461 82 LVDVGIDWVILGHSERRNV--FGEPDSLIAEKVAHALETGLNVVACIGEKLEERE 134 (149)
Q Consensus 82 Lkd~G~~~viiGHSERR~~--~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~ 134 (149)
|...| ++++|-| |... |.++++...+=++...++++.-+++||=+-.-+-
T Consensus 67 i~~~g--Gt~Lgss-R~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~ 118 (416)
T PRK14072 67 LAHTP--SGALGSC-RYKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDT 118 (416)
T ss_pred HhcCC--CeEeccC-CCCCcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHH
Confidence 44444 5599999 6555 5556777777789999999999999997644333
No 58
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=46.79 E-value=38 Score=28.57 Aligned_cols=63 Identities=17% Similarity=0.069 Sum_probs=41.9
Q ss_pred HHHHHhcCCCEEEecc-----cccccccC---CChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHH
Q psy7461 79 PAMLVDVGIDWVILGH-----SERRNVFG---EPDSLIAEKVAHALETGLNV----VACIGEKLEEREAGQTEAVVY 143 (149)
Q Consensus 79 ~~mLkd~G~~~viiGH-----SERR~~~~---Etd~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~~g~~~~v~~ 143 (149)
...||++|++.+..+. .|.|+... -+-+..-+-++.|.+.|+.+ |+=.||+.++|.. +...++
T Consensus 144 l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~--~l~~lr 218 (343)
T TIGR03551 144 LKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVD--HLLILR 218 (343)
T ss_pred HHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHH--HHHHHH
Confidence 4568999999876432 23333222 25566677889999999975 6667899888763 444443
No 59
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=46.75 E-value=17 Score=24.00 Aligned_cols=43 Identities=23% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
+..|++.|.+..+- . .+..+.++++.|...|..-++.||+..-
T Consensus 24 a~~Lr~~g~~v~~d-~---------~~~~l~k~i~~a~~~g~~~~iiiG~~e~ 66 (94)
T cd00861 24 YAELQAAGVDVLLD-D---------RNERPGVKFADADLIGIPYRIVVGKKSA 66 (94)
T ss_pred HHHHHHCCCEEEEE-C---------CCCCcccchhHHHhcCCCEEEEECCchh
Confidence 45666777655431 1 1235678899999999999999997743
No 60
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=45.46 E-value=21 Score=32.74 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhh
Q psy7461 68 VPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQI 146 (149)
Q Consensus 68 ~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql 146 (149)
.+.--|-|||-- .|+=...-..++--+|-=.. .| ..+ +++|++.||.|||+|--. +|......+|+.+-+
T Consensus 76 PGHADFGGEVER-vl~MVDgvlLlVDA~EGpMP--QT-rFV---lkKAl~~gL~PIVVvNKi--Drp~Arp~~Vvd~vf 145 (603)
T COG1217 76 PGHADFGGEVER-VLSMVDGVLLLVDASEGPMP--QT-RFV---LKKALALGLKPIVVINKI--DRPDARPDEVVDEVF 145 (603)
T ss_pred CCcCCccchhhh-hhhhcceEEEEEEcccCCCC--ch-hhh---HHHHHHcCCCcEEEEeCC--CCCCCCHHHHHHHHH
Confidence 344567788742 23333333445555554321 11 122 689999999999999876 788888888876543
No 61
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=45.38 E-value=23 Score=30.43 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=48.9
Q ss_pred ccccCCCCCcccc---cCHHHHHhc-CCCEEEe-cccccccccCCChHHHHHHHHHHHHC---CCeE-EEEeCCCHHHHh
Q psy7461 64 NCYKVPKGAFTGE---LSPAMLVDV-GIDWVIL-GHSERRNVFGEPDSLIAEKVAHALET---GLNV-VACIGEKLEERE 134 (149)
Q Consensus 64 nv~~~~~Ga~TGe---iS~~mLkd~-G~~~vii-GHSERR~~~~Etd~~i~~Kv~~al~~---gl~p-IlCiGE~~e~r~ 134 (149)
.+=+...|+||-+ -.+.|-+|+ |.+|+=+ =|.|+|..+.+..++ +++|.++ ||.+ +||..+...-|.
T Consensus 138 ~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~----v~aa~~L~~~Gf~v~~yc~~d~~~a~~ 213 (326)
T PRK11840 138 TYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVET----LKATEILVKEGFQVMVYCSDDPIAAKR 213 (326)
T ss_pred EECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHH----HHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 3346678999987 457788887 5577633 377899999866666 4666666 9999 999988765543
No 62
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=44.78 E-value=90 Score=25.06 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEE-EeCCCHHH
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVA-CIGEKLEE 132 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIl-CiGE~~e~ 132 (149)
.+.++++|++++++-- ..+ +.+..=++.+.++|+.+++ |--.+..+
T Consensus 97 i~~~~~aG~~giiipD----l~~----ee~~~~~~~~~~~g~~~i~~i~P~T~~~ 143 (242)
T cd04724 97 LRDAKEAGVDGLIIPD----LPP----EEAEEFREAAKEYGLDLIFLVAPTTPDE 143 (242)
T ss_pred HHHHHHCCCcEEEECC----CCH----HHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 6789999999999941 112 2334446888999998887 55555444
No 63
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=44.76 E-value=33 Score=25.25 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=28.8
Q ss_pred EEecccccccccCCChHHHHHHHHHHHH-CCCeEEEEeCCCHHHHhcC-ChHHHHHHhhh
Q psy7461 90 VILGHSERRNVFGEPDSLIAEKVAHALE-TGLNVVACIGEKLEEREAG-QTEAVVYKQIC 147 (149)
Q Consensus 90 viiGHSERR~~~~Etd~~i~~Kv~~al~-~gl~pIlCiGE~~e~r~~g-~~~~v~~~Ql~ 147 (149)
|.|||||- ..+...++..|+ .|+.|++=--.. ..| -+.+.+.+++.
T Consensus 2 VFIvhg~~--------~~~~~~v~~~L~~~~~ep~i~~~~~----~~g~tiie~le~~~~ 49 (125)
T PF10137_consen 2 VFIVHGRD--------LAAAEAVERFLEKLGLEPIIWHEQP----NLGQTIIEKLEEAAD 49 (125)
T ss_pred EEEEeCCC--------HHHHHHHHHHHHhCCCceEEeecCC----CCCCchHHHHHHHhc
Confidence 68999932 367777888888 799998643332 233 34555555443
No 64
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=44.69 E-value=1.8e+02 Score=25.08 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=62.3
Q ss_pred CccEEEEecccCCCHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCccccc----
Q psy7461 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGEL---- 77 (149)
Q Consensus 3 rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGei---- 77 (149)
+++++++|= -.+.+++.+.++...+.- . --+.+.||+..+........ .++.| ..|....|+||..-
T Consensus 197 ~~~~y~~ni--t~~~~e~i~~a~~a~~~G--a-d~vmv~~~~~g~~~~~~l~~~~~lpi---~~H~a~~ga~~~~~~~g~ 268 (367)
T cd08205 197 RKTLYAPNI--TGDPDELRRRADRAVEAG--A-NALLINPNLVGLDALRALAEDPDLPI---MAHPAFAGALSRSPDYGS 268 (367)
T ss_pred CcceEEEEc--CCCHHHHHHHHHHHHHcC--C-CEEEEecccccccHHHHHHhcCCCeE---EEccCcccccccCCCCcC
Confidence 456667773 344577777777665431 1 24777887766543322211 13333 33677788988421
Q ss_pred ----CHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHH
Q psy7461 78 ----SPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHAL 116 (149)
Q Consensus 78 ----S~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al 116 (149)
=....+-+|++.++.|..-- -|..+++.+.+=.+.++
T Consensus 269 ~~~~~~kl~RlaGad~~~~~~~~g--k~~~~~~~~~~la~~~~ 309 (367)
T cd08205 269 HFLLLGKLMRLAGADAVIFPGPGG--RFPFSREECLAIARACR 309 (367)
T ss_pred CHHHHHHHHHHcCCCccccCCCcc--CcCCCHHHHHHHHHHHh
Confidence 12367779999999999866 36777777654334333
No 65
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=44.01 E-value=26 Score=29.75 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=30.8
Q ss_pred CHHHHHhcCCCEEEeccc-----ccc---cccCCChHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 78 SPAMLVDVGIDWVILGHS-----ERR---NVFGEPDSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 78 S~~mLkd~G~~~viiGHS-----ERR---~~~~Etd~~i~~Kv~~al~~gl~pIlCiG 127 (149)
..++++++|++.|-||.. |.+ =-|. .+-+-+..|.++||.+|||+.
T Consensus 15 d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~----~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS----WLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H----HHHHHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHcCCCEEEEEEechhhccCCCCeeecH----HHHHHHHHHHhccCeEEEEec
Confidence 467899999999999862 332 2343 455557999999999999997
No 66
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=43.65 E-value=1.9e+02 Score=24.10 Aligned_cols=109 Identities=26% Similarity=0.242 Sum_probs=69.1
Q ss_pred CccEEE--EecccCCCHHHHHHHHHHhhcCC---------------CC-CCeEEEEecchhhHHHHhhhC-CCCeeeeec
Q psy7461 3 RKFWVG--GNWKMNGNKKEIEGIVDFLKKGP---------------LD-PKVEVVVGVPAIYLEYAKCLL-PSNVAPAAQ 63 (149)
Q Consensus 3 rk~~i~--~NwKmn~~~~~~~~~~~~~~~~~---------------~~-~~~~v~i~P~~~~L~~~~~~~-~~~i~igAQ 63 (149)
|.++.. -||..-.+.+++.+.+..+.+.. .. ..+-+=+.||...+....+.. ...--|+
T Consensus 101 RP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia-- 178 (257)
T COG2099 101 RPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIA-- 178 (257)
T ss_pred CCccccCCCceEEecCHHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEE--
Confidence 444544 68888889999888887663210 00 112233455555544433321 1111133
Q ss_pred ccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEE
Q psy7461 64 NCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVAC 125 (149)
Q Consensus 64 nv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlC 125 (149)
..|+|+=|--..||.+.+|++++-=-|=-- - --..|+..|.+.|+.+|+-
T Consensus 179 -----~~GPfs~~~n~all~q~~id~vItK~SG~~------G-g~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 179 -----MRGPFSEEDNKALLEQYRIDVVVTKNSGGA------G-GTYEKIEAARELGIPVIMI 228 (257)
T ss_pred -----ecCCcChHHHHHHHHHhCCCEEEEccCCcc------c-CcHHHHHHHHHcCCcEEEE
Confidence 569999999999999999999997555332 1 2346899999999987653
No 67
>PTZ00413 lipoate synthase; Provisional
Probab=43.47 E-value=2e+02 Score=25.46 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=64.9
Q ss_pred cEEEEecc-cCCCHHHHHHHHHHhhcCCCC-CCeEEEEecchh--hHHHHhhhCCCCeeeeecccccCC-------CCCc
Q psy7461 5 FWVGGNWK-MNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAI--YLEYAKCLLPSNVAPAAQNCYKVP-------KGAF 73 (149)
Q Consensus 5 ~~i~~NwK-mn~~~~~~~~~~~~~~~~~~~-~~~~v~i~P~~~--~L~~~~~~~~~~i~igAQnv~~~~-------~Ga~ 73 (149)
..|+.-+. -...-..+..|++.+..+... .++.|-+..|.. ....+.......+.+..-|+-... .+.+
T Consensus 196 ~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~a 275 (398)
T PTZ00413 196 YIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRA 275 (398)
T ss_pred EEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcC
Confidence 45566654 234446677777777665432 345555554422 222222222224555555643321 1223
Q ss_pred ccccCHHHHH---hc---C---CCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCH
Q psy7461 74 TGELSPAMLV---DV---G---IDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKL 130 (149)
Q Consensus 74 TGeiS~~mLk---d~---G---~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 130 (149)
|=+-|.+.|+ ++ | |.+.|+| +|||++++..-+..+.+.|.. ++=||..|
T Consensus 276 tYe~sLe~Lr~AKe~f~~gi~tcSGiIVG-------LGET~eEvie~m~dLrelGVD-ivtIGQYL 333 (398)
T PTZ00413 276 SYRQSLKVLEHVKEFTNGAMLTKSSIMLG-------LGETEEEVRQTLRDLRTAGVS-AVTLGQYL 333 (398)
T ss_pred CHHHHHHHHHHHHHHhcCCceEeeeeEec-------CCCCHHHHHHHHHHHHHcCCc-EEeecccc
Confidence 3344555554 44 4 5678888 788888888888888888887 44466543
No 68
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=43.39 E-value=33 Score=28.77 Aligned_cols=78 Identities=14% Similarity=0.040 Sum_probs=45.4
Q ss_pred CeEEEEecchhhHHHHhhhCCC-CeeeeecccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHH
Q psy7461 35 KVEVVVGVPAIYLEYAKCLLPS-NVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA 113 (149)
Q Consensus 35 ~~~v~i~P~~~~L~~~~~~~~~-~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~ 113 (149)
+.+.++.|....+..+...... +.++- +.... |.-|+..|++.|.++|++.++.|.+=-|.... .+.+-..
T Consensus 174 GAD~vfi~g~~~~e~i~~~~~~i~~Pl~---~n~~~-~~~~p~~s~~eL~~lGv~~v~~~~~~~~aa~~----a~~~~~~ 245 (285)
T TIGR02317 174 GADMIFPEALTSLEEFRQFAKAVKVPLL---ANMTE-FGKTPLFTADELREAGYKMVIYPVTAFRAMNK----AAEAVYN 245 (285)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCCEE---EEecc-CCCCCCCCHHHHHHcCCcEEEEchHHHHHHHH----HHHHHHH
Confidence 4677777765556555432211 22221 12222 33488899999999999999999776665432 3333344
Q ss_pred HHHHCCC
Q psy7461 114 HALETGL 120 (149)
Q Consensus 114 ~al~~gl 120 (149)
..++.|-
T Consensus 246 ~l~~~g~ 252 (285)
T TIGR02317 246 EIKEHGT 252 (285)
T ss_pred HHHHcCC
Confidence 4444553
No 69
>PRK00955 hypothetical protein; Provisional
Probab=41.72 E-value=1.5e+02 Score=27.72 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhcCCCCCC------eEE--EEecch-hhHHHHhhh-CCCCeeeeecccccCC---CCCcccccC-----
Q psy7461 17 KKEIEGIVDFLKKGPLDPK------VEV--VVGVPA-IYLEYAKCL-LPSNVAPAAQNCYKVP---KGAFTGELS----- 78 (149)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~------~~v--~i~P~~-~~L~~~~~~-~~~~i~igAQnv~~~~---~Ga~TGeiS----- 78 (149)
.....+|++.+.++..-.. +++ +..++. .++..+.+. +...+.|+-|+.+..- -+-.+.+.-
T Consensus 386 ~~~l~~LLr~l~~l~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~ 465 (620)
T PRK00955 386 HKEYLELLRKVRKLPGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVK 465 (620)
T ss_pred hHHHHHHHHHHhccCCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHH
Confidence 4567788887766422111 111 223332 366666553 3457889999988632 122232221
Q ss_pred --HHHHHhcCCC-----EEEecccccccccCCChHHHHHHHHHHHHCCCeEE
Q psy7461 79 --PAMLVDVGID-----WVILGHSERRNVFGEPDSLIAEKVAHALETGLNVV 123 (149)
Q Consensus 79 --~~mLkd~G~~-----~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pI 123 (149)
-+.++++|.+ |.|+||. +||+++...-++.+.+.++.++
T Consensus 466 ~~~~i~~~~G~~~~I~~yfIvGfP------GETeEDf~et~eflkel~~~~~ 511 (620)
T PRK00955 466 KFDRINKKLGKKQYLVPYLMSSHP------GSTLEDAIELAEYTKDLGYQPE 511 (620)
T ss_pred HHHHhhhhcCCCccEEEEEEEECC------CCCHHHHHHHHHHHHHcCCCcc
Confidence 1466787776 7889986 6788888888888888887654
No 70
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=41.52 E-value=69 Score=26.79 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=40.6
Q ss_pred ccCHHHHHhcCCCEEEe-----ccccccc-ccCC--ChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhc
Q psy7461 76 ELSPAMLVDVGIDWVIL-----GHSERRN-VFGE--PDSLIAEKVAHALETGLNV----VACIGEKLEEREA 135 (149)
Q Consensus 76 eiS~~mLkd~G~~~vii-----GHSERR~-~~~E--td~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~~ 135 (149)
+=..+.|+++|++.+-- .+.|-|+ ++.. |-+..-+-++.|.+.|+.. |+-.||+.++|..
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~ 214 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIE 214 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHH
Confidence 44568899999987653 2345444 3332 5666677788998998753 4455799988864
No 71
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=41.12 E-value=42 Score=27.02 Aligned_cols=105 Identities=14% Similarity=-0.025 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHh-hhCCCCeeeeecccccCCCCCcccccC--HHHHHhcCCCEEEe
Q psy7461 16 NKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAK-CLLPSNVAPAAQNCYKVPKGAFTGELS--PAMLVDVGIDWVIL 92 (149)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~-~~~~~~i~igAQnv~~~~~Ga~TGeiS--~~mLkd~G~~~vii 92 (149)
+.++..+++..+... ..+.+.+|.=+...|.... ......-.-+ ++ ...+.|..+-+.. ...|++.|.+-+++
T Consensus 64 ~~~~~~d~l~~~~~~--~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~-~~-~~~~yg~~~~~fl~~l~~L~~~g~nII~t 139 (220)
T TIGR01618 64 PIQAMVEFYVMQNIQ--AVKYDNIVIDNISALQNLWLENIGRAAKNG-QP-ELQHYQKLDLWFLDLLTVLKESNKNIYAT 139 (220)
T ss_pred CHHHHHHHHHHHHhc--cccCCEEEEecHHHHHHHHHHHHhhhcCCC-Cc-ccccHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 334555555544322 2345666666666665532 1100000000 00 2223444444443 24577899999999
Q ss_pred cccccccccCCChH-------HHHHHHHHHHHCCCeEEEE
Q psy7461 93 GHSERRNVFGEPDS-------LIAEKVAHALETGLNVVAC 125 (149)
Q Consensus 93 GHSERR~~~~Etd~-------~i~~Kv~~al~~gl~pIlC 125 (149)
+|..-|....|+.+ .|+.|+...+ .|+.-+|+
T Consensus 140 Ahe~~~~~~de~G~~~~r~~P~i~~K~~n~l-~G~~DvV~ 178 (220)
T TIGR01618 140 AWELTNQSSGESGQIYNRYQPDIREKVLNAF-LGLTDVVG 178 (220)
T ss_pred EeeccccccCCCCCCcceechhhhhhHHHhh-cccccEEE
Confidence 99977665555544 6788888877 55555544
No 72
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=40.87 E-value=8.9 Score=28.53 Aligned_cols=10 Identities=50% Similarity=1.155 Sum_probs=7.1
Q ss_pred EEec-cccccc
Q psy7461 90 VILG-HSERRN 99 (149)
Q Consensus 90 viiG-HSERR~ 99 (149)
+||| |||+|.
T Consensus 45 IlVGHHSE~R~ 55 (126)
T PF12083_consen 45 ILVGHHSEKRH 55 (126)
T ss_pred eeccccchHHH
Confidence 5777 489874
No 73
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.83 E-value=12 Score=27.31 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 86 GIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 86 G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiG 127 (149)
.++..+.|-||++..=++. ..-+-+..+...|.+|..|..
T Consensus 36 dVelifFGpse~~la~~~~--~~l~~l~~~~s~g~~p~AC~~ 75 (113)
T COG3370 36 DVELIFFGPSEKLLAKNDG--DSLKMLQELRSLGIKPLACKV 75 (113)
T ss_pred ceEEEEECchHHHHHhcch--HHHHHHHHHHHcCCcchHHHH
Confidence 4778899999998655444 445667889999999999986
No 74
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=40.70 E-value=1.1e+02 Score=26.77 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHHHHhcCCCEEEecc---ccc-cccc--CCChHHHHHHHHHHHHCCCeEEEEe-----CCCHHHHhcCChHHHHH
Q psy7461 79 PAMLVDVGIDWVILGH---SER-RNVF--GEPDSLIAEKVAHALETGLNVVACI-----GEKLEEREAGQTEAVVY 143 (149)
Q Consensus 79 ~~mLkd~G~~~viiGH---SER-R~~~--~Etd~~i~~Kv~~al~~gl~pIlCi-----GE~~e~r~~g~~~~v~~ 143 (149)
.+.|+++||+.+.+|- |++ .+.+ +-+-+.+.+-++.+.++|+.+...+ ||+.++.+ .|.+++.
T Consensus 290 l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~--~ti~~~~ 363 (472)
T TIGR03471 290 LKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIR--KTIDFAK 363 (472)
T ss_pred HHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHH--HHHHHHH
Confidence 4568889999999995 222 1111 2355677788899999999987664 67776655 3555443
No 75
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=40.17 E-value=63 Score=27.38 Aligned_cols=57 Identities=23% Similarity=0.106 Sum_probs=38.8
Q ss_pred HHHHHhcCCCEEE-ec----cccccccc---CCChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhc
Q psy7461 79 PAMLVDVGIDWVI-LG----HSERRNVF---GEPDSLIAEKVAHALETGLNV----VACIGEKLEEREA 135 (149)
Q Consensus 79 ~~mLkd~G~~~vi-iG----HSERR~~~---~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~~ 135 (149)
...|+++|++.+. .| +.+-|... +-+.+..-+-++.|.+.|+.. ++=.||+.++|-.
T Consensus 153 l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~ 221 (351)
T TIGR03700 153 LDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVD 221 (351)
T ss_pred HHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHH
Confidence 6679999998665 23 33334322 234556567789999999864 6778899988764
No 76
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=39.90 E-value=57 Score=25.61 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=32.5
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 80 AMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 80 ~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
..+.+.|++++++-+-++......-+-.+.++++... =.||++.|--
T Consensus 160 ~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~---~ipvia~GGi 206 (232)
T TIGR03572 160 REAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV---SIPVIALGGA 206 (232)
T ss_pred HHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC---CCCEEEECCC
Confidence 6678899999999997775544444555555555432 3689999954
No 77
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=39.69 E-value=30 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=19.5
Q ss_pred HHHHHhcCCCEEEeccccccccc
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVF 101 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~ 101 (149)
..++++.++++++.||+=++...
T Consensus 95 ~~~~~~~~~d~vi~GHtH~~~~~ 117 (155)
T cd00841 95 LYLAKEGGADVVLYGHTHIPVIE 117 (155)
T ss_pred hhhhhhcCCCEEEECcccCCccE
Confidence 56788899999999999988654
No 78
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=38.41 E-value=1.4e+02 Score=22.32 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=25.6
Q ss_pred cCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCe
Q psy7461 77 LSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121 (149)
Q Consensus 77 iS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~ 121 (149)
+-++.+++.+.+++|+||+-+- ..+.-.+...+..++.
T Consensus 82 ~l~~~i~~~~p~~Vl~g~t~~g-------~~la~rlA~~L~~~~v 119 (181)
T cd01985 82 ALAALIKKEKPDLILAGATSIG-------KQLAPRVAALLGVPQI 119 (181)
T ss_pred HHHHHHHHhCCCEEEECCcccc-------cCHHHHHHHHhCCCcc
Confidence 3455566679999999999883 2445555666666554
No 79
>PRK07094 biotin synthase; Provisional
Probab=38.07 E-value=1e+02 Score=25.38 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=42.0
Q ss_pred CCcccccCHHHHHhcCCCEEEeccc----cccccc--CCChHHHHHHHHHHHHCCCeE----EEEe-CCCHHHHhc
Q psy7461 71 GAFTGELSPAMLVDVGIDWVILGHS----ERRNVF--GEPDSLIAEKVAHALETGLNV----VACI-GEKLEEREA 135 (149)
Q Consensus 71 Ga~TGeiS~~mLkd~G~~~viiGHS----ERR~~~--~Etd~~i~~Kv~~al~~gl~p----IlCi-GE~~e~r~~ 135 (149)
|..|-| -...|+++|++.+.+|.- +-+..+ +-+-+.+-+-++.+.+.|+.+ |+-. ||+.+++..
T Consensus 125 g~~~~e-~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~ 199 (323)
T PRK07094 125 GERSYE-EYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLAD 199 (323)
T ss_pred CCCCHH-HHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHH
Confidence 433433 367889999999988762 222211 345677777889999999853 2333 888877663
No 80
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=38.03 E-value=77 Score=27.17 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=30.3
Q ss_pred CHHHHHhcCCCEEEecccccccccCC-------ChHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 78 SPAMLVDVGIDWVILGHSERRNVFGE-------PDSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 78 S~~mLkd~G~~~viiGHSERR~~~~E-------td~~i~~Kv~~al~~gl~pIlCiG 127 (149)
-.++||+.|+++|=+ +++.+ +-+.+-+..++|.++||...|+.-
T Consensus 29 ~~~ilk~~G~N~vRl------Rvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfH 79 (332)
T PF07745_consen 29 LFQILKDHGVNAVRL------RVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFH 79 (332)
T ss_dssp HHHHHHHTT--EEEE------EE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHhcCCCeEEE------EeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeec
Confidence 457899999999943 33433 236778889999999999999874
No 81
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=37.25 E-value=52 Score=23.29 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=23.1
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHH
Q psy7461 110 EKVAHALETGLNVVACIGEKLEEREAGQTEAVVY 143 (149)
Q Consensus 110 ~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~ 143 (149)
+|..+++.+.|.|++=||.. |-|..|+.
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~------Glt~~vi~ 35 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSN------GLTEGVLA 35 (97)
T ss_pred HHHHHHhcCCCCCeEEECCC------CCCHHHHH
Confidence 67788999999999999964 77777764
No 82
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=37.23 E-value=1.1e+02 Score=22.56 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=31.6
Q ss_pred HHHHHhcCCCEEEe--c-ccc---------cccccCCChHHHHHHHHHHHHCCCeEEE
Q psy7461 79 PAMLVDVGIDWVIL--G-HSE---------RRNVFGEPDSLIAEKVAHALETGLNVVA 124 (149)
Q Consensus 79 ~~mLkd~G~~~vii--G-HSE---------RR~~~~Etd~~i~~Kv~~al~~gl~pIl 124 (149)
+++||++|++.+++ | |.- +|.. +-..+.+..-|++|.+.||.++.
T Consensus 6 ~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp-~L~~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 6 VDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHP-GLKRDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred HHHHHHhCCCEEEEEcccccEEEEccCCCCcCCC-CCCcCHHHHHHHHHHHCCCEEEE
Confidence 57889999999988 3 321 1111 11256778889999999999885
No 83
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=36.50 E-value=43 Score=26.81 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=34.9
Q ss_pred eeecccccCCCCCcccccCHHHHHhcCCCEEEeccccccc
Q psy7461 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRN 99 (149)
Q Consensus 60 igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~ 99 (149)
.|.+|+.....+.+...+|++.+.+...+++++..+..+.
T Consensus 221 aG~~n~~~~~~~~~~~~vs~E~v~~~~pDvIi~~~~~~~~ 260 (319)
T COG0614 221 AGGKNIAADEEGPGGAQVSPEQILAADPDVIILTGSGGSD 260 (319)
T ss_pred hCCCCccccccCCCCCccCHHHHHhcCCCEEEEecCCCCc
Confidence 6889988766666669999999999999999999999864
No 84
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=35.67 E-value=26 Score=26.29 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=37.2
Q ss_pred CeeeeecccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 57 NVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 57 ~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiG 127 (149)
+|.|+..|.- .|+ .=|-.+-.|+++|++.| |..|=-|.++ .++.++||-+|.|=+
T Consensus 47 dilVaG~nFG---~GS-SRE~A~~al~~~Gi~~V-IA~SFa~If~-----------rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 47 DILVSGFNFG---TGS-SREQAATALLAKGIPLV-VSGSFGNIFS-----------RNSINNALLSIELPF 101 (129)
T ss_pred CEEEeCCccC---CCC-cHHHHHHHHHHcCccEE-EechHHHHHH-----------HhhHhcCCCeEechH
Confidence 5666666642 222 12567778999999955 4555555543 789999999888754
No 85
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=35.64 E-value=63 Score=22.74 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.0
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHH
Q psy7461 110 EKVAHALETGLNVVACIGEKLEEREAGQTEAVVY 143 (149)
Q Consensus 110 ~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~ 143 (149)
+|..+++.++|.|++=||.. |-|..|+.
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~------Glt~~vi~ 33 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKN------GLTEGVIK 33 (95)
T ss_pred HHHHHHHhCCCCCeEEECCC------CCCHHHHH
Confidence 56788999999999999974 77777754
No 86
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=35.06 E-value=53 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 103 EPDSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 103 Etd~~i~~Kv~~al~~gl~pIlCiG 127 (149)
=||+.|.+.|..++++|..|-|=--
T Consensus 14 LTdeqI~kQI~Y~i~~GW~p~iEft 38 (138)
T CHL00130 14 LTDQQIEKQIQYAISKGWALNVEWT 38 (138)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEec
Confidence 4899999999999999999865433
No 87
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=34.22 E-value=65 Score=26.67 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=42.1
Q ss_pred CHHHHHhcCCCEEE-ecc----cccc-cccC--CChHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHH
Q psy7461 78 SPAMLVDVGIDWVI-LGH----SERR-NVFG--EPDSLIAEKVAHALETGLNV----VACIGEKLEEREAGQTEAVVY 143 (149)
Q Consensus 78 S~~mLkd~G~~~vi-iGH----SERR-~~~~--Etd~~i~~Kv~~al~~gl~p----IlCiGE~~e~r~~g~~~~v~~ 143 (149)
..+.||++|++.+. +|. .+-| .++. -+.+..-+-++.|.+.|+.+ |+=.||+.++|.. +...++
T Consensus 109 ~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~--~l~~lr 184 (309)
T TIGR00423 109 VLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVE--HLLRIR 184 (309)
T ss_pred HHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHH--HHHHHH
Confidence 47789999999775 342 2323 3333 25566667789999999876 4445799998874 444443
No 88
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=34.01 E-value=49 Score=25.23 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=35.9
Q ss_pred EecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEeccc
Q psy7461 40 VGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHS 95 (149)
Q Consensus 40 i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHS 95 (149)
+.++......+.+. +|+.|+.....+...+++|++.|.+.+.+++++.+.
T Consensus 154 ~~~~~~~~~~~~~~------~G~~n~~~~~~~~~~~~vs~E~l~~~npD~I~v~~~ 203 (238)
T PF01497_consen 154 VAGSGSYFGDLLEL------AGGKNVAAEAGGGGYIPVSLEQLLALNPDVIFVSDR 203 (238)
T ss_dssp EECTTSHHHHHHHH------TTEEESHHHHHSSSEEEEEHHHHHHHS-SEEEEEEC
T ss_pred cccCCcchhhHHHh------hhccCcccccccccccccCHHHHHHhCCCEEEEECC
Confidence 34444455555544 477777433338999999999999999999999988
No 89
>PRK06256 biotin synthase; Validated
Probab=33.69 E-value=1e+02 Score=25.61 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=39.5
Q ss_pred HHHHHhcCCCEEEecc--ccc-cc-c-cCCChHHHHHHHHHHHHCCCeEE----EEeCCCHHHHhcCChHHHH
Q psy7461 79 PAMLVDVGIDWVILGH--SER-RN-V-FGEPDSLIAEKVAHALETGLNVV----ACIGEKLEEREAGQTEAVV 142 (149)
Q Consensus 79 ~~mLkd~G~~~viiGH--SER-R~-~-~~Etd~~i~~Kv~~al~~gl~pI----lCiGE~~e~r~~g~~~~v~ 142 (149)
...|+++|++.+.+|- |++ +. + -+.+-+..-+-++.+.+.|+.+. +-.||+.+++.. +...+
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~--~~~~l 225 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVE--HAFFL 225 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHH--HHHHH
Confidence 5667799999987752 221 11 1 12455666677889999998632 225899888774 44444
No 90
>PRK09248 putative hydrolase; Validated
Probab=33.62 E-value=44 Score=26.62 Aligned_cols=80 Identities=16% Similarity=0.062 Sum_probs=38.2
Q ss_pred CeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCC---CCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHH
Q psy7461 35 KVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPK---GAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAE 110 (149)
Q Consensus 35 ~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~---Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~ 110 (149)
++|+-+.|+.-.+......+. -++.+|+.+....+. ..|+-++ ..++ +.| ...+++|.+|..+.. . ...
T Consensus 72 GiE~~~~~~~~~~~~~~~~~~~~D~vi~svH~~~~~~~~~~~~~~~~-i~~l-~~g-~~~vLAHP~~~~~~~-~---~~~ 144 (246)
T PRK09248 72 GIEANIKNYDGEIDLPGDMLKKLDIVIAGFHEPVFAPGDKETNTQAL-INAI-KNG-RVDIIGHPGNPKYPI-D---IEA 144 (246)
T ss_pred EEEeccccCCCcccCCHhHhhhCCEEEEecccCccCCcCHHHHHHHH-HHHH-hcC-CCCEEECcCCCCCcc-c---HHH
Confidence 455555554332322222221 256678776321111 1122221 2344 556 579999999865322 2 223
Q ss_pred HHHHHHHCCCe
Q psy7461 111 KVAHALETGLN 121 (149)
Q Consensus 111 Kv~~al~~gl~ 121 (149)
-++.+.+.|.-
T Consensus 145 ~~~~~~~~g~~ 155 (246)
T PRK09248 145 VVKAAKEHNVA 155 (246)
T ss_pred HHHHHHHhCCE
Confidence 35666666663
No 91
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=32.71 E-value=1e+02 Score=26.00 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=33.2
Q ss_pred ccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCe
Q psy7461 74 TGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121 (149)
Q Consensus 74 TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~ 121 (149)
|-+. .+.|++.|...+++.|...- .|.++.+.+-++++.++|+.
T Consensus 209 t~el-~~~L~~~~~~~~~vsh~nh~---~Ei~~~~~~ai~~L~~aGi~ 252 (331)
T TIGR00238 209 TDEL-CELLASFELQLMLVTHINHC---NEITEEFAEAMKKLRTVNVT 252 (331)
T ss_pred CHHH-HHHHHhcCCcEEEEccCCCh---HhCCHHHHHHHHHHHHcCCE
Confidence 4443 34788999999999887653 36667788888999999985
No 92
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=32.34 E-value=73 Score=27.82 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=42.2
Q ss_pred eEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEe
Q psy7461 36 VEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVIL 92 (149)
Q Consensus 36 ~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~vii 92 (149)
+.+.=||........+..+.-.+.-||-|+= --|+|.|.+|+..|.+.|+=-+|-
T Consensus 245 v~iAEFPtT~eAA~asr~~Gm~VlMGAPNiv--rGgSHsGNvsA~ela~~glLDiLs 299 (377)
T COG3454 245 VAIAEFPTTVEAAKASRELGMQVLMGAPNIV--RGGSHSGNVSARELAQHGLLDILS 299 (377)
T ss_pred eeEEeCccHHHHHHHHHHhCchhhcCCCcee--ccCCcccchhHHHHHhCCceeeec
Confidence 4566778776666665555446778888875 789999999999999999876663
No 93
>PRK01254 hypothetical protein; Provisional
Probab=31.97 E-value=2.4e+02 Score=26.94 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecchh-------hHHHHhh-hCCCCeeeeecccccC------CCCCcccccCHHH-
Q psy7461 17 KKEIEGIVDFLKKGPLDPKVEVVVGVPAI-------YLEYAKC-LLPSNVAPAAQNCYKV------PKGAFTGELSPAM- 81 (149)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~v~i~P~~~-------~L~~~~~-~~~~~i~igAQnv~~~------~~Ga~TGeiS~~m- 81 (149)
.....+|++.+.++..-..+.|...-|+- +|..+.+ .+.+.+.|+-|+++.. ..|-+|-+-=.++
T Consensus 467 h~~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f 546 (707)
T PRK01254 467 HEPTINLYRRARDLKGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELF 546 (707)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHH
Confidence 35677777777754221223333321222 3555543 2234688899998863 2344554333333
Q ss_pred ---HHhcC-----CCEEEecccccccccCCChHHHHHHHHHHHHCCCeE
Q psy7461 82 ---LVDVG-----IDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122 (149)
Q Consensus 82 ---Lkd~G-----~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~p 122 (149)
.+.+| +.|.|+||. +||+++...-+..+.+.++.|
T Consensus 547 ~rirk~~gk~q~LipyfIvGhP------GeTeeDf~eLaefLkel~f~~ 589 (707)
T PRK01254 547 DKYSKEAGKEQYLIPYFISAHP------GTTDEDMVNLALWLKKNRFRL 589 (707)
T ss_pred HHHHHHCCCCeEEEEeEEEECC------CCCHHHHHHHHHHHHHhCCCc
Confidence 23333 446677775 566666666666666666543
No 94
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=31.01 E-value=56 Score=18.30 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=10.9
Q ss_pred cccCCChHHHHHHHHHH
Q psy7461 99 NVFGEPDSLIAEKVAHA 115 (149)
Q Consensus 99 ~~~~Etd~~i~~Kv~~a 115 (149)
.+|||++..-.+.++..
T Consensus 13 ~lFGE~~~~R~~RLr~l 29 (30)
T PF08799_consen 13 TLFGETDADRRERLRRL 29 (30)
T ss_dssp CETT--HHHHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHh
Confidence 58999998877666554
No 95
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=30.94 E-value=50 Score=25.96 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=30.0
Q ss_pred ccccccccCCChHHHHHHHHHHHHCCCeEEE--EeCCCHHHHh
Q psy7461 94 HSERRNVFGEPDSLIAEKVAHALETGLNVVA--CIGEKLEERE 134 (149)
Q Consensus 94 HSERR~~~~Etd~~i~~Kv~~al~~gl~pIl--CiGE~~e~r~ 134 (149)
-||||+=++ .+++..=+..|.+.||++|+ |=.++...|.
T Consensus 107 PseR~KGYA--~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrk 147 (174)
T COG3981 107 PSERRKGYA--KEMLKLALEKARELGIKKVLVTCDKDNIASRK 147 (174)
T ss_pred hhhhccCHH--HHHHHHHHHHHHHcCCCeEEEEeCCCCchhhH
Confidence 499998664 57888889999999999875 6566655443
No 96
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=30.55 E-value=90 Score=26.30 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=30.0
Q ss_pred EEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 89 WVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 89 ~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
++++|-| |...|. +++...+=++...++++..+++||=+-.
T Consensus 63 Gt~Lgts-R~~~~~-~~~~~~~~~~~l~~~~Id~Li~IGGdgs 103 (301)
T TIGR02482 63 GTILGTA-RCPEFK-TEEGRQKAVENLKKLGIEGLVVIGGDGS 103 (301)
T ss_pred CceeccC-CCCccC-CHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 3578887 555454 4555666678888999999999997643
No 97
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=30.48 E-value=1.7e+02 Score=25.75 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=36.8
Q ss_pred cCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEE
Q psy7461 67 KVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVAC 125 (149)
Q Consensus 67 ~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlC 125 (149)
..+.|.|. .+++.+.|++++.+= .| -+.+.+.+-++.+.+.|+.+++|
T Consensus 235 ~~Di~~~v----v~~~a~aGAD~vTVH-~e------a~~~ti~~ai~~akk~GikvgVD 282 (391)
T PRK13307 235 TLDTGNLE----ARMAADATADAVVIS-GL------APISTIEKAIHEAQKTGIYSILD 282 (391)
T ss_pred ccChhhHH----HHHHHhcCCCEEEEe-cc------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 34566655 889999999999872 22 13347888889999999999997
No 98
>PRK14126 cell division protein ZapA; Provisional
Probab=30.47 E-value=25 Score=24.14 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=28.3
Q ss_pred cCCCEEEecccccccccCCChHHHHHHHHHHHHCC
Q psy7461 85 VGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119 (149)
Q Consensus 85 ~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~g 119 (149)
+|-.|.|.| .|.+.++.+....++.|+....+.+
T Consensus 14 ~G~~Y~i~~-~e~ee~l~~vA~~vd~km~ei~~~~ 47 (85)
T PRK14126 14 YGQQYTIVG-DESTSHIRMVAAIVDDKMRELNEKN 47 (85)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 577899998 6677888888899999999887765
No 99
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.25 E-value=2e+02 Score=22.70 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=41.2
Q ss_pred ccCHHHHHhcCCCEEEecccccccccC--CChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhc
Q psy7461 76 ELSPAMLVDVGIDWVILGHSERRNVFG--EPDSLIAEKVAHALETGLNVVACIGEKLEEREA 135 (149)
Q Consensus 76 eiS~~mLkd~G~~~viiGHSERR~~~~--Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~ 135 (149)
+|+++.|+..|++++++-=-+-=..+. +-.+.+...+..+.++|+..++- -.+.+.|=+
T Consensus 17 ~i~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vv-SNn~e~RV~ 77 (175)
T COG2179 17 DITPDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVV-SNNKESRVA 77 (175)
T ss_pred hCCHHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEE-eCCCHHHHH
Confidence 789999999999999876544322222 34477888899999999996654 444455443
No 100
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=30.21 E-value=79 Score=21.48 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=23.7
Q ss_pred ccccCHHHHHhcCCCEEEecccccccc----cCCChHH
Q psy7461 74 TGELSPAMLVDVGIDWVILGHSERRNV----FGEPDSL 107 (149)
Q Consensus 74 TGeiS~~mLkd~G~~~viiGHSERR~~----~~Etd~~ 107 (149)
..+.-.++..+.+++.+++|+..++.. +|.+...
T Consensus 82 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~ 119 (132)
T cd01988 82 IASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQ 119 (132)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHH
Confidence 334445678899999999999988643 5544443
No 101
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=29.71 E-value=71 Score=20.32 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.6
Q ss_pred ccccCCChHHHHHHHHHHHHCCCeEE
Q psy7461 98 RNVFGEPDSLIAEKVAHALETGLNVV 123 (149)
Q Consensus 98 R~~~~Etd~~i~~Kv~~al~~gl~pI 123 (149)
|-+.+.+|.....||..+|+.|..+.
T Consensus 7 r~lt~~d~~~fc~rVt~aL~~GW~l~ 32 (54)
T PF08410_consen 7 RVLTGPDDSAFCHRVTEALNEGWQLY 32 (54)
T ss_pred EEEECCChHHHHHHHHHHHHcCCEec
Confidence 55678899999999999999999863
No 102
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=29.43 E-value=1.3e+02 Score=21.41 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=43.5
Q ss_pred cccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHH
Q psy7461 73 FTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYK 144 (149)
Q Consensus 73 ~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~ 144 (149)
-+|..-.+.|++.|++.+-.++- .+..+.|.+.+..+++ .-..|+..|-+-- -....|.+++.+
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v------~Dd~~~I~~~l~~~~~-~~dliittGG~g~-g~~D~t~~~l~~ 81 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIV------PDDKEAIKEALREALE-RADLVITTGGTGP-GPDDVTPEAVAE 81 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEe------CCCHHHHHHHHHHHHh-CCCEEEEcCCCCC-CCCcCcHHHHHH
Confidence 35566678899999987766654 2666788888888886 4677888887642 222356665554
No 103
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=29.24 E-value=2.8e+02 Score=21.69 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=36.8
Q ss_pred cccCHHHHHhcCCCEEEec--ccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHH
Q psy7461 75 GELSPAMLVDVGIDWVILG--HSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEE 132 (149)
Q Consensus 75 GeiS~~mLkd~G~~~viiG--HSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~ 132 (149)
..-.++.|+++|.+.+-+| |. |.-..+-+.+.++...++|+. .++.|.+.++
T Consensus 66 ~~~~~~~L~~~G~d~~tlaNNH~-----fD~G~~gl~~t~~~l~~~~i~-~~g~~~~~~~ 119 (239)
T cd07381 66 PPEVADALKAAGFDVVSLANNHT-----LDYGEEGLLDTLDALDEAGIA-HAGAGRNLEE 119 (239)
T ss_pred CHHHHHHHHHhCCCEEEcccccc-----cccchHHHHHHHHHHHHcCCc-eeECCCCHHH
Confidence 3456789999999998764 74 444445666777777788877 5677876543
No 104
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=29.18 E-value=93 Score=24.56 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=27.8
Q ss_pred CCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 86 GIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 86 G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
..+++|+++. . . . ++...+.++++.+.|+..++|-|.+..
T Consensus 9 DlDGTLl~~~-~-~-i---~~~~~~ai~~l~~~G~~~~iaTGR~~~ 48 (270)
T PRK10513 9 DMDGTLLLPD-H-T-I---SPAVKQAIAAARAKGVNVVLTTGRPYA 48 (270)
T ss_pred ecCCcCcCCC-C-c-c---CHHHHHHHHHHHHCCCEEEEecCCChH
Confidence 4677888653 2 1 2 233345588899999999999998765
No 105
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=29.09 E-value=64 Score=23.63 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=38.2
Q ss_pred eeeeecccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCH
Q psy7461 58 VAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKL 130 (149)
Q Consensus 58 i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 130 (149)
+.|+..|. +.|+- =|..+..|+.+|++.||--=-.| . | -.++.++||-||.|-.+..
T Consensus 51 iiVaG~nF---G~GSS-RE~A~~al~~~Gi~aVIA~SFa~-I-f----------~rN~in~Gll~i~~~~~~~ 107 (121)
T cd01579 51 FIVGGENY---GQGSS-REHAALAPMYLGVRAVLAKSFAR-I-H----------RANLINFGILPLTFADEDD 107 (121)
T ss_pred EEEcCCcC---CCCcc-HHHHHHHHHHHCCCEEEEccHHH-H-H----------HhHHhhcCcceEEecChhh
Confidence 66666663 23321 26678889999998877533333 2 2 3789999999998875544
No 106
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=28.61 E-value=57 Score=26.89 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=26.8
Q ss_pred cccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHh
Q psy7461 99 NVFGEPDSLIAEKVAHALETGLNVVACIGEKLEERE 134 (149)
Q Consensus 99 ~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~ 134 (149)
..|.++.+.| +.+|.+.|...++++|-+++...
T Consensus 13 ~~~~~d~~~v---i~~a~~~gv~~~~~~g~~~~~~~ 45 (256)
T COG0084 13 EEFDEDRDEV---IARAREAGVKKMVVVGTDLEDFK 45 (256)
T ss_pred hhhcCCHHHH---HHHHHHcCCcEEEEeecCHHHHH
Confidence 4566666665 78899999999999999987765
No 107
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=28.40 E-value=73 Score=25.07 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEe
Q psy7461 103 EPDSLIAEKVAHALETGLNVVACI 126 (149)
Q Consensus 103 Etd~~i~~Kv~~al~~gl~pIlCi 126 (149)
=||+.|.+.|..++++|..|.|=-
T Consensus 76 LtdeqI~kQVeYli~~GW~pclEf 99 (176)
T PLN02289 76 LTDEELAKEVDYLLRNKWVPCLEF 99 (176)
T ss_pred CCHHHHHHHHHHHHhCCCeeeeee
Confidence 489999999999999999886533
No 108
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=28.38 E-value=63 Score=24.38 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=30.0
Q ss_pred CeeeeecccccCCC-CCcccccCHHHHHhcCCCEEEeccccccccc
Q psy7461 57 NVAPAAQNCYKVPK-GAFTGELSPAMLVDVGIDWVILGHSERRNVF 101 (149)
Q Consensus 57 ~i~igAQnv~~~~~-Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~ 101 (149)
.|.+.=|.+..... .....+.....+.+.|++|++.||.-+++..
T Consensus 159 ~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 159 NILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred EEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCeee
Confidence 34455555543322 1112357888899999999999999988653
No 109
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=41 Score=27.44 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=22.1
Q ss_pred cccccC---HHHHHhcCCCEEEeccccccccc
Q psy7461 73 FTGELS---PAMLVDVGIDWVILGHSERRNVF 101 (149)
Q Consensus 73 ~TGeiS---~~mLkd~G~~~viiGHSERR~~~ 101 (149)
.|||+| +.-.++.|+..+..||..--+++
T Consensus 194 iTGd~~~~~~~~a~e~gi~~i~~gH~~tE~~g 225 (250)
T COG0327 194 ITGDLSHHTAHDARELGLSVIDAGHYATERPG 225 (250)
T ss_pred EECCCcHHHHHHHHHCCCeEEecCchHHHHHH
Confidence 589998 45567899999999998554443
No 110
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=28.02 E-value=3.2e+02 Score=21.91 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=67.8
Q ss_pred EEEecccCCC-HHH----HHHHHH-HhhcCCCCCCeEEEEecchhhHHH-HhhhCCCCeeeeecccccCCCCCc-ccccC
Q psy7461 7 VGGNWKMNGN-KKE----IEGIVD-FLKKGPLDPKVEVVVGVPAIYLEY-AKCLLPSNVAPAAQNCYKVPKGAF-TGELS 78 (149)
Q Consensus 7 i~~NwKmn~~-~~~----~~~~~~-~~~~~~~~~~~~v~i~P~~~~L~~-~~~~~~~~i~igAQnv~~~~~Ga~-TGeiS 78 (149)
|-.||+.-+. ... +..+++ .+.....+-++-++|+-+=+-|.. ++..+...+.++--.=+..+.|+- +|-+|
T Consensus 54 i~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS 133 (203)
T COG0856 54 IKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSIS 133 (203)
T ss_pred eEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcCceee
Confidence 5689998764 333 223333 233322222344566665544444 344555677776545455555543 67788
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEe
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCi 126 (149)
-..-.=.|=+.+|+-.- --|-.++..-++...+.|=+|++|+
T Consensus 134 ~NFa~V~gK~cvIVDDv------ittG~Ti~E~Ie~lke~g~kpv~v~ 175 (203)
T COG0856 134 SNFASVEGKRCVIVDDV------ITTGSTIKETIEQLKEEGGKPVLVV 175 (203)
T ss_pred cccccccCceEEEEecc------cccChhHHHHHHHHHHcCCCcEEEE
Confidence 77666666666666321 1244567777899999999999996
No 111
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=27.97 E-value=1.2e+02 Score=21.86 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=41.7
Q ss_pred cccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHH
Q psy7461 75 GELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYK 144 (149)
Q Consensus 75 GeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~ 144 (149)
|..-.++|++.|++.+-.+ ...++.+.|...+..+++.. ..|++.|-+-- -....|.+++.+
T Consensus 19 ~~~l~~~l~~~G~~v~~~~------~v~Dd~~~i~~~l~~~~~~~-D~VittGG~g~-~~~D~t~~a~~~ 80 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYG------IVPDDPDAIKEALRRALDRA-DLVITTGGTGP-GPDDVTPEALAE 80 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEE------EEESSHHHHHHHHHHHHHTT-SEEEEESSSSS-STTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCeeeEEE------EECCCHHHHHHHHHhhhccC-CEEEEcCCcCc-ccCCcccHHHHH
Confidence 4555788999988665443 44577789999999998887 88888885521 112345555543
No 112
>PRK09936 hypothetical protein; Provisional
Probab=27.85 E-value=1.8e+02 Score=24.80 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=47.2
Q ss_pred eeecccccCCCCCcccccCHHHHHhcCCCEEEe-----cccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVIL-----GHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 60 igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~vii-----GHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
+-.||-+ .+-.+.+=+-....+++.||+-+|| |-| .|+..+-.+.+-+..|.+.||..+ ||=..+
T Consensus 26 ~Qp~n~d-~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~--vGL~~D 95 (296)
T PRK09936 26 YQPQNRD-SQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLV--VGLYAD 95 (296)
T ss_pred ecccccc-CCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCC----CcccchHHHHHHHHHHHHcCCEEE--EcccCC
Confidence 4455533 2333444445567899999998887 444 799999999999999999999988 554443
No 113
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.59 E-value=1.6e+02 Score=19.38 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=32.2
Q ss_pred cccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 73 FTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 73 ~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiG 127 (149)
..|..-+..|.+.||+.+|.|+ +++.. .....+.|+.++.-.+
T Consensus 48 ~~~~~~~~~l~~~~v~~vi~~~------iG~~a------~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 48 GEGKLAARLLALEGCDAVLVGG------IGGPA------AAKLEAAGIKPIKAAE 90 (102)
T ss_pred ccchHHHHHHHHCCCcEEEEcc------cCccH------HHHHHHcCCEEEEcCC
Confidence 4677888999999999999997 33322 2456778999986554
No 114
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=27.40 E-value=33 Score=32.54 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=29.8
Q ss_pred ccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 76 ELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 76 eiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiG 127 (149)
+-..+.|++.|++||.+|=.||.+| +.+. .|++.. .++.+++=-|
T Consensus 671 ~~~~~Ll~kY~V~YVyVG~~ER~~Y-~~~~----~~l~~~--~~le~Vy~~g 715 (723)
T TIGR03662 671 TEARELLERYGVDYVYVGPLERQRY-GLST----DALEDL--GDLEPVFEQG 715 (723)
T ss_pred HHHHHHHHHcCCeEEEECchhhhhc-cccH----Hhhccc--CCceEEEEcC
Confidence 3446789999999999999999776 3321 233332 3466665433
No 115
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=27.34 E-value=1.1e+02 Score=23.15 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=27.1
Q ss_pred CCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHH
Q psy7461 86 GIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEE 132 (149)
Q Consensus 86 G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~ 132 (149)
..+++|+.+.. .+- +...+.++.+.+.|+..++|-|.+...
T Consensus 4 DlDGTLl~~~~--~i~----~~~~~al~~l~~~Gi~~~~aTGR~~~~ 44 (225)
T TIGR01482 4 DIDGTLTDPNR--AIN----ESALEAIRKAESVGIPVVLVTGNSVQF 44 (225)
T ss_pred eccCccCCCCc--ccC----HHHHHHHHHHHHCCCEEEEEcCCchHH
Confidence 35777886432 221 233345788888999999999987654
No 116
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=27.19 E-value=60 Score=27.52 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=40.5
Q ss_pred CeEEEEecchhhHHHHhhhCC-CCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEeccccccccc
Q psy7461 35 KVEVVVGVPAIYLEYAKCLLP-SNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVF 101 (149)
Q Consensus 35 ~~~v~i~P~~~~L~~~~~~~~-~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~ 101 (149)
+.+.++.|.......+..... -++++- =|+- .+.-|+..|.+.|.++|++.|+.|++=-|...
T Consensus 179 GAD~if~~al~~~e~i~~f~~av~~pl~-~N~t---~~g~tp~~~~~~L~~~Gv~~V~~~~~~~raa~ 242 (289)
T COG2513 179 GADAIFPEALTDLEEIRAFAEAVPVPLP-ANIT---EFGKTPLLTVAELAELGVKRVSYGLTAFRAAL 242 (289)
T ss_pred CCcEEccccCCCHHHHHHHHHhcCCCee-eEee---ccCCCCCcCHHHHHhcCceEEEECcHHHHHHH
Confidence 457777666666555543321 122122 1332 34446889999999999999999999877644
No 117
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=26.77 E-value=1.5e+02 Score=20.90 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=42.4
Q ss_pred CCcccccCHHHHHhcCCCEE----EecccccccccCCC-------------------hHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 71 GAFTGELSPAMLVDVGIDWV----ILGHSERRNVFGEP-------------------DSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 71 Ga~TGeiS~~mLkd~G~~~v----iiGHSERR~~~~Et-------------------d~~i~~Kv~~al~~gl~pIlCiG 127 (149)
.-|+.+.-...|.+.|+.|+ |-|-.+-|..|++. ....-+++...+..+ ..++|..
T Consensus 29 ~~~~k~~l~~~l~~~gi~Y~~~~~Lg~~~~~r~~~~~~~~~~~f~~~Y~~~l~~~~~~~~~l~~L~~~~~~~-v~LlC~e 107 (122)
T PF04343_consen 29 PGFNKEDLASFLEEAGIEYVWLPELGPSRELRKWYHEDPDWDEFFERYRAELESNPEFQEGLERLAELAREG-VALLCAE 107 (122)
T ss_pred CCCCHHHHHHHHHHCCceEeechhhcCcccchhhhcccccHHHHHHHHHHHHcccHhHHHHHHHHHHHHcCC-eEEEEEe
Confidence 35888888888999999988 44556667666622 235557788888888 8888876
Q ss_pred CCH
Q psy7461 128 EKL 130 (149)
Q Consensus 128 E~~ 130 (149)
...
T Consensus 108 ~dp 110 (122)
T PF04343_consen 108 KDP 110 (122)
T ss_pred cCh
Confidence 653
No 118
>PRK05926 hypothetical protein; Provisional
Probab=26.57 E-value=1.2e+02 Score=26.25 Aligned_cols=56 Identities=20% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHhcCCCEEEec-c----ccccc-ccC--CChHHHHHHHHHHHHCCCe----EEEEeCCCHHHHh
Q psy7461 79 PAMLVDVGIDWVILG-H----SERRN-VFG--EPDSLIAEKVAHALETGLN----VVACIGEKLEERE 134 (149)
Q Consensus 79 ~~mLkd~G~~~viiG-H----SERR~-~~~--Etd~~i~~Kv~~al~~gl~----pIlCiGE~~e~r~ 134 (149)
...||++|++.+-.| + .+-|. ++. -+.+.--+-++.|.+.||. -|+=.||+.++|-
T Consensus 172 l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv 239 (370)
T PRK05926 172 LQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIV 239 (370)
T ss_pred HHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHH
Confidence 567999999877764 4 44454 442 2444445667888888885 4666999999885
No 119
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=26.34 E-value=2e+02 Score=24.33 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=37.9
Q ss_pred CHHHHHhcCCCEEEecc----cccccccC--CChHHHHHHHHHHHHCCCeEE-----EEe-CCCHHHHh
Q psy7461 78 SPAMLVDVGIDWVILGH----SERRNVFG--EPDSLIAEKVAHALETGLNVV-----ACI-GEKLEERE 134 (149)
Q Consensus 78 S~~mLkd~G~~~viiGH----SERR~~~~--Etd~~i~~Kv~~al~~gl~pI-----lCi-GE~~e~r~ 134 (149)
....|+++|++.+-+|= .+-++..+ .+-+.+.+-++.+.+.|+..| +.+ ||+.++-+
T Consensus 101 ~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~ 169 (374)
T PRK05799 101 KLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWK 169 (374)
T ss_pred HHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHH
Confidence 46678889999988873 33333333 466777788888998887533 232 67766654
No 120
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.80 E-value=1.3e+02 Score=25.80 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=38.0
Q ss_pred HHHHhcCCCEEEecccc-ccccc--------CCChHHHHHHHHHHHHCCCe-----EEEEeCCCHHHHh
Q psy7461 80 AMLVDVGIDWVILGHSE-RRNVF--------GEPDSLIAEKVAHALETGLN-----VVACIGEKLEERE 134 (149)
Q Consensus 80 ~mLkd~G~~~viiGHSE-RR~~~--------~Etd~~i~~Kv~~al~~gl~-----pIlCiGE~~e~r~ 134 (149)
..||++|++.+-+|-== .|..| ..+-+..-.-++.|.++|+. .|+-+||+.++|-
T Consensus 167 ~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~ 235 (371)
T PRK09240 167 AELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDAL 235 (371)
T ss_pred HHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHH
Confidence 67999999988877422 22222 22456777778999999986 3566788877764
No 121
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=25.65 E-value=3.5e+02 Score=21.64 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=38.5
Q ss_pred CCCCCcccccCHHHHHhcCCCEEEec----ccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 68 VPKGAFTGELSPAMLVDVGIDWVILG----HSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 68 ~~~Ga~TGeiS~~mLkd~G~~~viiG----HSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
.+.++++|....++|+++.++++++| |.|..- ..+++.-..=-+.+++..-..|+-+..+
T Consensus 147 ~~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~--~~~~~~ea~~k~~~~~~a~~~ill~D~s 210 (240)
T PRK10411 147 RKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGAL--WDSNAINADYKSMLLKRAAQSLLLIDKS 210 (240)
T ss_pred CCCCceECHHHHHHHHhcCCCEEEEeceeECCCCCc--ccCCHHHHHHHHHHHHHhCcEEEEEecc
Confidence 35799999999999999999999998 445442 2223222222344455555555555443
No 122
>PLN02965 Probable pheophorbidase
Probab=25.56 E-value=56 Score=25.44 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=13.2
Q ss_pred HHHHhcCC--CEEEeccccc
Q psy7461 80 AMLVDVGI--DWVILGHSER 97 (149)
Q Consensus 80 ~mLkd~G~--~~viiGHSER 97 (149)
+.|.+++. +.+++|||-=
T Consensus 63 ~~l~~l~~~~~~~lvGhSmG 82 (255)
T PLN02965 63 ALLSDLPPDHKVILVGHSIG 82 (255)
T ss_pred HHHHhcCCCCCEEEEecCcc
Confidence 44566665 8999999953
No 123
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=25.36 E-value=1.1e+02 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHCCCeEEE
Q psy7461 103 EPDSLIAEKVAHALETGLNVVA 124 (149)
Q Consensus 103 Etd~~i~~Kv~~al~~gl~pIl 124 (149)
=||+.|.+.|..+++.|..|-+
T Consensus 12 lt~~~i~~QI~yll~qG~~~~l 33 (99)
T cd03527 12 LTDEQIAKQIDYIISNGWAPCL 33 (99)
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 3799999999999999998653
No 124
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=25.20 E-value=56 Score=22.60 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.7
Q ss_pred HHHHHhcCCCEEEeccccc
Q psy7461 79 PAMLVDVGIDWVILGHSER 97 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSER 97 (149)
...|.+.|++.|+|||...
T Consensus 6 ~~~l~~~gv~lv~I~~g~~ 24 (115)
T PF13911_consen 6 KPELEAAGVKLVVIGCGSP 24 (115)
T ss_pred HHHHHHcCCeEEEEEcCCH
Confidence 4578899999999999887
No 125
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=25.04 E-value=1e+02 Score=27.59 Aligned_cols=48 Identities=8% Similarity=0.103 Sum_probs=35.1
Q ss_pred HHHHHhcCCCEEEecccccccccCC-----Ch---HHHHHHHHHHHHCCCeEEEEe
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGE-----PD---SLIAEKVAHALETGLNVVACI 126 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~E-----td---~~i~~Kv~~al~~gl~pIlCi 126 (149)
.++++++|++.-=.+-|=.|.+-.- +. +-.++=+..++++||+|+||+
T Consensus 75 I~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL 130 (477)
T PRK15014 75 IKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL 130 (477)
T ss_pred HHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3689999998887777777764321 11 233445799999999999998
No 126
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=24.81 E-value=2.3e+02 Score=24.09 Aligned_cols=55 Identities=22% Similarity=0.377 Sum_probs=42.4
Q ss_pred CCcccccCHHHHHhcCCCEE---------EecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHH
Q psy7461 71 GAFTGELSPAMLVDVGIDWV---------ILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEER 133 (149)
Q Consensus 71 Ga~TGeiS~~mLkd~G~~~v---------iiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r 133 (149)
-+|+|.++-.-+++.|+..| |+|-+- +.+.+.+=++-.++.|+... ++|+--++.
T Consensus 104 ~~~~G~i~D~iiR~~GvplV~G~IPGva~ivG~a~-------~~e~~~~I~~e~q~r~~lv~-l~G~i~~q~ 167 (287)
T cd01917 104 PPWTGFIGDPIVRGLGIKMVDWTIPGEAVILGRAK-------DSKALKKIVDDLMGRGFMLF-LCDEIVEQL 167 (287)
T ss_pred ccccCCCccHHHHHcCCceecCCCCeEEEEEecCC-------ChHHHHHHHHHHHHCCcEEE-EecHHHHHH
Confidence 39999999999999999875 788654 55677777899999999854 556444443
No 127
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.77 E-value=4.8e+02 Score=22.93 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=4.5
Q ss_pred eeeeecccc
Q psy7461 58 VAPAAQNCY 66 (149)
Q Consensus 58 i~igAQnv~ 66 (149)
+.+|-|..|
T Consensus 261 l~iglQSgs 269 (445)
T PRK14340 261 IHLPVQSGS 269 (445)
T ss_pred EEECCCcCC
Confidence 445555544
No 128
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=24.75 E-value=99 Score=26.76 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=32.6
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHH----HHHHCCCeEEEEeCCCHH
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA----HALETGLNVVACIGEKLE 131 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~----~al~~gl~pIlCiGE~~e 131 (149)
..+|+|+|++++=+|-+.| -||.+-+.+-++ .+.++ .+.|||-|=...
T Consensus 93 E~~Lks~GitV~RigG~nR----~ETa~~v~~~~~~~yp~af~n-~kvvvv~GwDy~ 144 (337)
T COG2247 93 ENALKSLGITVKRIGGANR----YETAEKVAKFFREDYPNAFKN-VKVVVVYGWDYA 144 (337)
T ss_pred HHHHHhCCcEEEEecCcch----HHHHHHHHHHHHhhchhhhcC-eEEEEEeccccH
Confidence 4799999999999998887 344444433332 34444 678888886654
No 129
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=24.75 E-value=81 Score=27.41 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 102 GEPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 102 ~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
.|-.+....+++.+.+.|=. |+|||-|
T Consensus 232 ~~v~~eta~~i~~~k~~GgR-IiaVGTT 258 (348)
T COG0809 232 YEVPQETADAINAAKARGGR-IIAVGTT 258 (348)
T ss_pred eecCHHHHHHHHHHHHcCCe-EEEEcch
Confidence 45667777888999999876 8999987
No 130
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=24.71 E-value=1e+02 Score=25.55 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=44.4
Q ss_pred CCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCC-eEEEEeCCCHHH
Q psy7461 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL-NVVACIGEKLEE 132 (149)
Q Consensus 69 ~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl-~pIlCiGE~~e~ 132 (149)
--|.++|.+....=-..|+++++|. |+- .+.+.+..+++...+.+- ..|+.|.|-...
T Consensus 168 vmGr~~G~LAl~~ala~~a~~ilip--E~~----~~~~~~~~~i~~~~~~~k~~~iVvvsEG~~~ 226 (282)
T PF00365_consen 168 VMGRNAGWLALAAALATGADLILIP--EEP----FDLDELLDDIKKRYERGKRYGIVVVSEGAKD 226 (282)
T ss_dssp ESSTTSTHHHHHHHHHHTSSEEEBT--TSH----HHHHHHHHHHHHHHHTTSSEEEEEEETTSBS
T ss_pred eCCCCcCHHHHHHHhccCCCEEEEe--ccc----cchHHHHHHhhhhhcccCceEEEEecccccc
Confidence 4699999999888778899999997 554 345677788888887764 357777776544
No 131
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=24.21 E-value=2.6e+02 Score=21.71 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=32.9
Q ss_pred CHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEE
Q psy7461 78 SPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVAC 125 (149)
Q Consensus 78 S~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlC 125 (149)
.++.|.++|+.|-.-==|-.|. -+.+-.=++.|.+.|+.+|+-
T Consensus 21 Aa~~L~~fgi~ye~~VvSAHRT-----Pe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 21 AAEILEEFGVPYEVRVVSAHRT-----PEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred HHHHHHHcCCCeEEEEEeccCC-----HHHHHHHHHHHHHCCCeEEEe
Confidence 3688999999997766666664 455666678999999988764
No 132
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=24.11 E-value=1.8e+02 Score=24.72 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=33.2
Q ss_pred EEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcC
Q psy7461 89 WVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAG 136 (149)
Q Consensus 89 ~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g 136 (149)
++++|=| |...|. +++...+=++.+.++++.-+++||-+-.-+.+.
T Consensus 64 Gs~Lgts-R~~~~~-~~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~ 109 (338)
T cd00363 64 GTIIGSA-RCKEFR-TEEGRAKAAENLKKHGIDALVVIGGDGSYTGAD 109 (338)
T ss_pred CeecccC-CCCccC-CHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHH
Confidence 3477776 656554 456666778899999999999999875544443
No 133
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.09 E-value=1.3e+02 Score=19.34 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCH
Q psy7461 106 SLIAEKVAHALETGLNVVACIGEKL 130 (149)
Q Consensus 106 ~~i~~Kv~~al~~gl~pIlCiGE~~ 130 (149)
..+.++++.|.+.|..-++-||+..
T Consensus 38 ~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 38 EKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred CCHHHHHHHHHHcCCCEEEEECcch
Confidence 3678889999999999999999753
No 134
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=24.03 E-value=1.4e+02 Score=23.20 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=28.0
Q ss_pred HHHHHhcCCCEEEeccc---ccccccCCChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 79 PAMLVDVGIDWVILGHS---ERRNVFGEPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHS---ERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
+..+.+.|++|+.+++. ..+......+....++++... + .||++.|--
T Consensus 132 ~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~-iPvia~GGI 182 (221)
T PRK01130 132 GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--G-CPVIAEGRI 182 (221)
T ss_pred HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--C-CCEEEECCC
Confidence 46788999999987532 222222333344444454444 3 688888854
No 135
>PRK13660 hypothetical protein; Provisional
Probab=24.00 E-value=1.7e+02 Score=22.95 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=32.1
Q ss_pred EEEeccccccc-ccCCCh-------HHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 89 WVILGHSERRN-VFGEPD-------SLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 89 ~viiGHSERR~-~~~Etd-------~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
..+-||.--+. .|+|.| ..+.+++..+++.|+.-++|=|--
T Consensus 4 ~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~ggal 52 (182)
T PRK13660 4 LLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISGQL 52 (182)
T ss_pred EEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 46788887775 566666 467788999999999999998843
No 136
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=24.00 E-value=3.1e+02 Score=22.72 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHHHCCCeEEEEe---CCCHHHHhcCChHHHHHHh
Q psy7461 112 VAHALETGLNVVACI---GEKLEEREAGQTEAVVYKQ 145 (149)
Q Consensus 112 v~~al~~gl~pIlCi---GE~~e~r~~g~~~~v~~~Q 145 (149)
+++|++.|+..|-.. -|....+..|.+.+-..++
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~ 121 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLER 121 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHH
Confidence 478888888754333 4444455666665544333
No 137
>TIGR03356 BGL beta-galactosidase.
Probab=23.88 E-value=2e+02 Score=25.15 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=36.5
Q ss_pred HHHHHhcCCCEEEecccccccccC-C--Ch----HHHHHHHHHHHHCCCeEEEEe
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFG-E--PD----SLIAEKVAHALETGLNVVACI 126 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~-E--td----~~i~~Kv~~al~~gl~pIlCi 126 (149)
.++|+++|++.+=.+=|=.|..-. + -| +-...=+..++++||+||++.
T Consensus 60 i~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 60 VALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred HHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 468999999998888887776443 1 12 344555799999999999998
No 138
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=23.75 E-value=2.1e+02 Score=23.03 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=9.0
Q ss_pred HHHHhcCCCEEEecc
Q psy7461 80 AMLVDVGIDWVILGH 94 (149)
Q Consensus 80 ~mLkd~G~~~viiGH 94 (149)
+.|.++|++++.+||
T Consensus 29 ~~L~~~Gv~~iEvg~ 43 (263)
T cd07943 29 RALDAAGVPLIEVGH 43 (263)
T ss_pred HHHHHcCCCEEEeec
Confidence 455566666666664
No 139
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.63 E-value=2.1e+02 Score=22.56 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=30.3
Q ss_pred ccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHH-HHHHCCCeEEEE
Q psy7461 76 ELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA-HALETGLNVVAC 125 (149)
Q Consensus 76 eiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~-~al~~gl~pIlC 125 (149)
+=+.+.++++|.+++-+.....+.+..+.+..-.++++ .+.+.||.+.-+
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~ 66 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGY 66 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEe
Confidence 34567889999999999755444333222222234455 445899986543
No 140
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=23.52 E-value=1e+02 Score=27.59 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=35.1
Q ss_pred HHHHhcCCCEEEecccccccccCCC----h----HHHHHHHHHHHHCCCeEEEEe
Q psy7461 80 AMLVDVGIDWVILGHSERRNVFGEP----D----SLIAEKVAHALETGLNVVACI 126 (149)
Q Consensus 80 ~mLkd~G~~~viiGHSERR~~~~Et----d----~~i~~Kv~~al~~gl~pIlCi 126 (149)
++|+++|++..=.+-|=.|..-.-+ | +-.++=+..++++||.|+||+
T Consensus 78 ~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL 132 (474)
T PRK09852 78 ALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL 132 (474)
T ss_pred HHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 6899999998888888777643211 1 234455789999999999997
No 141
>KOG0174|consensus
Probab=23.41 E-value=60 Score=26.26 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.6
Q ss_pred EEecccCCCHHHHHHHHHHh
Q psy7461 8 GGNWKMNGNKKEIEGIVDFL 27 (149)
Q Consensus 8 ~~NwKmn~~~~~~~~~~~~~ 27 (149)
=.|||-|++.+++.+|+++.
T Consensus 159 D~~~r~nMt~EE~~~fvk~A 178 (224)
T KOG0174|consen 159 DANWRPNMTLEECVRFVKNA 178 (224)
T ss_pred hhhcCCCCCHHHHHHHHHHH
Confidence 35999999999999998864
No 142
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=23.40 E-value=54 Score=27.31 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=16.3
Q ss_pred cCHHHHHhcCCCEEEecccc
Q psy7461 77 LSPAMLVDVGIDWVILGHSE 96 (149)
Q Consensus 77 iS~~mLkd~G~~~viiGHSE 96 (149)
.+|..+.+.||+.+|||+|=
T Consensus 27 ~~A~~~d~agvD~iLVGDSl 46 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSL 46 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTH
T ss_pred HHHHHHHHcCCCEEEeCCcH
Confidence 68999999999999999984
No 143
>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
Probab=23.13 E-value=58 Score=18.94 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=10.7
Q ss_pred ccCHHHHHhcCCC
Q psy7461 76 ELSPAMLVDVGID 88 (149)
Q Consensus 76 eiS~~mLkd~G~~ 88 (149)
+-|..+|+|+|++
T Consensus 22 ~Lsd~~L~DIGl~ 34 (40)
T PF06568_consen 22 ELSDRQLADIGLT 34 (40)
T ss_pred cCCHHHHHHcCCC
Confidence 5688899999975
No 144
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=23.07 E-value=1.3e+02 Score=21.36 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred HHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHH
Q psy7461 111 KVAHALETGLNVVACIGEKLEEREAGQTEAVVY 143 (149)
Q Consensus 111 Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~ 143 (149)
+..+++.+.+.||+=||.+ |-|..++.
T Consensus 8 ~~Lrs~Ah~l~piv~IGk~------Glte~vi~ 34 (97)
T COG1534 8 RFLRSKAHHLKPIVQIGKN------GLTEGVIK 34 (97)
T ss_pred HHHHHhhccCCceEEecCC------ccCHHHHH
Confidence 4567788999999999974 77777754
No 145
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=22.86 E-value=1.8e+02 Score=21.38 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=36.4
Q ss_pred cccccCCCCCccc--ccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 63 QNCYKVPKGAFTG--ELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 63 Qnv~~~~~Ga~TG--eiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
+.+.....++.+| --.+++|++.|++.+|++.==+|. .....+.|+..+.--|.+
T Consensus 40 ev~~np~~~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a------------~~~l~~~GIkv~~~~~~~ 96 (121)
T COG1433 40 EVIENPAASAEKGAGIRIAELLVDEGVDVVIASNIGPNA------------YNALKAAGIKVYVAPGGT 96 (121)
T ss_pred EEeecccccccCcchHHHHHHHHHcCCCEEEECccCHHH------------HHHHHHcCcEEEecCCCC
Confidence 3333333344444 467999999999999998766654 245667788887555533
No 146
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=22.73 E-value=65 Score=27.06 Aligned_cols=19 Identities=42% Similarity=0.436 Sum_probs=16.0
Q ss_pred HHHHHHCC--CeEEEEeCCCH
Q psy7461 112 VAHALETG--LNVVACIGEKL 130 (149)
Q Consensus 112 v~~al~~g--l~pIlCiGE~~ 130 (149)
|+.|+++| |.|++|.||+.
T Consensus 172 vklAl~~Ga~LVPv~~FGE~d 192 (297)
T PF03982_consen 172 VKLALQHGAPLVPVYSFGEND 192 (297)
T ss_pred HHhHHHcCCcEEeEEEeCChh
Confidence 68888866 78999999984
No 147
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=22.61 E-value=1.3e+02 Score=23.87 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=0.0
Q ss_pred ccccCHHHHHhc---CCCEEEeccccccccc-CCChHHHHHHHHHHHHCCCe
Q psy7461 74 TGELSPAMLVDV---GIDWVILGHSERRNVF-GEPDSLIAEKVAHALETGLN 121 (149)
Q Consensus 74 TGeiS~~mLkd~---G~~~viiGHSERR~~~-~Etd~~i~~Kv~~al~~gl~ 121 (149)
+|-|+++.++++ |++++++| |-.| .++-+...++++..++..+.
T Consensus 179 dGGI~~~ti~~~~~aGad~iVvG----saI~~a~d~~~~~~~i~~~~~~~~~ 226 (228)
T PTZ00170 179 DGGINLETIDIAADAGANVIVAG----SSIFKAKDRKQAIELLRESVQKHLS 226 (228)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEc----hHHhCCCCHHHHHHHHHHHHHHHhh
No 148
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=22.50 E-value=1.7e+02 Score=22.83 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=28.6
Q ss_pred cCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHH
Q psy7461 85 VGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLE 131 (149)
Q Consensus 85 ~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e 131 (149)
+..+++|+.+. +.... ...+.++.+.+.|...++|-|.+..
T Consensus 8 ~DlDGTLl~~~--~~i~~----~~~~ai~~~~~~G~~~~iaTGR~~~ 48 (272)
T PRK10530 8 LDLDGTLLTPK--KTILP----ESLEALARAREAGYKVIIVTGRHHV 48 (272)
T ss_pred EeCCCceECCC--CccCH----HHHHHHHHHHHCCCEEEEEcCCChH
Confidence 35678888653 22222 2245578899999999999998764
No 149
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=22.50 E-value=1.6e+02 Score=24.45 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=28.3
Q ss_pred hHHHHhhhCCCCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEec
Q psy7461 46 YLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILG 93 (149)
Q Consensus 46 ~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiG 93 (149)
+|+.+.+..+.++.|+.++.... |-.-.+-.++.|+++|++.+-+|
T Consensus 21 ~L~~lk~~~~~D~vIaNgEn~~g--G~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 21 NLPQLKSKYQADLVIANGENTTH--GKGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred HHHHHHHhCCCCEEEEcCcccCC--CCCCCHHHHHHHHhcCCCEEEcc
Confidence 34444443334566666665432 32335778888999999988776
No 150
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.49 E-value=2.2e+02 Score=24.02 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHhhhCCCCee----eeecccccCCCCCcccc---cCHHHHHhcCCCEEEec---cccccc----ccCC-ChHHHHHH
Q psy7461 47 LEYAKCLLPSNVA----PAAQNCYKVPKGAFTGE---LSPAMLVDVGIDWVILG---HSERRN----VFGE-PDSLIAEK 111 (149)
Q Consensus 47 L~~~~~~~~~~i~----igAQnv~~~~~Ga~TGe---iS~~mLkd~G~~~viiG---HSERR~----~~~E-td~~i~~K 111 (149)
+..+.+.+..++. +++.|.. .|.+|=+ --+.+|.+.|++|+-+. |.++-. ++.+ ......++
T Consensus 194 v~aIR~~vG~d~~v~iRi~~~D~~---~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ 270 (353)
T cd02930 194 VRAVRAAVGEDFIIIYRLSMLDLV---EGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAK 270 (353)
T ss_pred HHHHHHHcCCCceEEEEecccccC---CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHH
Confidence 4445555544444 4455543 2223322 33467889999999883 544321 1111 12334455
Q ss_pred HHHHHHCCCeEEEEeCCC
Q psy7461 112 VAHALETGLNVVACIGEK 129 (149)
Q Consensus 112 v~~al~~gl~pIlCiGE~ 129 (149)
++.+.. .||+++|.-
T Consensus 271 ik~~v~---iPVi~~G~i 285 (353)
T cd02930 271 LKRAVD---IPVIASNRI 285 (353)
T ss_pred HHHhCC---CCEEEcCCC
Confidence 665542 578888764
No 151
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=22.40 E-value=82 Score=27.29 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 103 EPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 103 Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
|..+...++++.|.+.|=. |+|||-|
T Consensus 231 ~I~~~ta~~i~~ak~~G~r-IiAVGTT 256 (342)
T PRK00147 231 EVPQETADAINAAKARGGR-VIAVGTT 256 (342)
T ss_pred EECHHHHHHHHHHHHcCCe-EEEEccc
Confidence 3556677888999988864 9999987
No 152
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=22.30 E-value=66 Score=26.89 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=30.0
Q ss_pred ccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCC
Q psy7461 74 TGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120 (149)
Q Consensus 74 TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl 120 (149)
+|..|++.|.++|++.++.|++=-|..+. .+.+-....++.|-
T Consensus 221 ~~~~~~~eL~~lG~~~v~~~~~~~~aa~~----a~~~~~~~~~~~g~ 263 (285)
T TIGR02320 221 YYTTPTDEFRDAGISVVIYANHLLRAAYA----AMQQVAERILEHGR 263 (285)
T ss_pred CCCCCHHHHHHcCCCEEEEhHHHHHHHHH----HHHHHHHHHHHcCC
Confidence 46679999999999999998776665442 44444455555553
No 153
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.05 E-value=3.8e+02 Score=22.28 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=32.7
Q ss_pred CEEEeccc-ccccccCCChHHHHHHHHHHHHCCCeEEEEeCC
Q psy7461 88 DWVILGHS-ERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128 (149)
Q Consensus 88 ~~viiGHS-ERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE 128 (149)
.|++++|. ++-..-.=+.+...+-++...+.|+.+++|-|-
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~ 217 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGP 217 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecCh
Confidence 79999999 443444556677778889999999999999887
No 154
>PLN02417 dihydrodipicolinate synthase
Probab=21.96 E-value=2.7e+02 Score=22.70 Aligned_cols=50 Identities=12% Similarity=0.341 Sum_probs=22.7
Q ss_pred HHHHhcCCCEEEe-cccccccccC-CChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 80 AMLVDVGIDWVIL-GHSERRNVFG-EPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 80 ~mLkd~G~~~vii-GHSERR~~~~-Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
+.|.+.|++++++ |++=-=..+. |--..+.+.+..+....+..|.+||.+
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 4455667777655 4421101111 000122223333444567778888853
No 155
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.94 E-value=2.3e+02 Score=18.08 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=36.8
Q ss_pred CCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHH-HCCCeEEE
Q psy7461 71 GAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHAL-ETGLNVVA 124 (149)
Q Consensus 71 Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al-~~gl~pIl 124 (149)
|.|+|==-|.+|++.|.+-+++-.+++=. ..-|+.+.+.+...+ +.|+..+.
T Consensus 7 gG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 7 GGFIGIELAEALAELGKEVTLIERSDRLL--PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp SSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred cCHHHHHHHHHHHHhCcEEEEEeccchhh--hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 45666667889999999999998887732 455666666665444 66777654
No 156
>KOG3859|consensus
Probab=21.81 E-value=82 Score=27.27 Aligned_cols=18 Identities=28% Similarity=0.708 Sum_probs=15.2
Q ss_pred HHHHHHCCCe-EEEEeCCC
Q psy7461 112 VAHALETGLN-VVACIGEK 129 (149)
Q Consensus 112 v~~al~~gl~-pIlCiGE~ 129 (149)
|.++..+|+. -|+||||+
T Consensus 33 V~ksv~~GF~FNilCvGET 51 (406)
T KOG3859|consen 33 VNKSVSQGFCFNILCVGET 51 (406)
T ss_pred HHHHHhcCceEEEEEeccC
Confidence 6778888987 59999997
No 157
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=21.54 E-value=1.6e+02 Score=23.84 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHHCCCeEEEEeCCCHHHHh
Q psy7461 112 VAHALETGLNVVACIGEKLEERE 134 (149)
Q Consensus 112 v~~al~~gl~pIlCiGE~~e~r~ 134 (149)
++.+.++|..+++|-|.+...|+
T Consensus 129 ~~~l~~~G~~Vf~lTGR~e~~r~ 151 (229)
T TIGR01675 129 YQKIIELGIKIFLLSGRWEELRN 151 (229)
T ss_pred HHHHHHCCCEEEEEcCCChHHHH
Confidence 46667777777777777655543
No 158
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=21.41 E-value=15 Score=29.48 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=16.3
Q ss_pred CCccEEEEecccCCCH---------HHHHHHHHHhhc
Q psy7461 2 SRKFWVGGNWKMNGNK---------KEIEGIVDFLKK 29 (149)
Q Consensus 2 ~rk~~i~~NwKmn~~~---------~~~~~~~~~~~~ 29 (149)
||+. |-+|||.|-.. ++-..|+++..+
T Consensus 114 ~R~s-is~nWK~N~gsa~lEqi~~~~ryk~Wvd~~s~ 149 (203)
T PF02750_consen 114 MRTS-ISGNWKANTGSAMLEQIAMTERYKLWVDECSE 149 (203)
T ss_dssp EEEE-SSSTSSTTSSSEEEEEE---HHHHHHHHHHGG
T ss_pred EEcc-ccccccccccchheeecCCChHHHHHHHHHHH
Confidence 3444 47999999422 455556666544
No 159
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.40 E-value=2.9e+02 Score=19.96 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=25.0
Q ss_pred cccccCHHHHHh---cCCCEEEe-c-ccccccccCCChHHHHHHHHH----HHHCCCe
Q psy7461 73 FTGELSPAMLVD---VGIDWVIL-G-HSERRNVFGEPDSLIAEKVAH----ALETGLN 121 (149)
Q Consensus 73 ~TGeiS~~mLkd---~G~~~vii-G-HSERR~~~~Etd~~i~~Kv~~----al~~gl~ 121 (149)
-||-|++..+.+ .|+++|+| | |.+--+ |.+-+....+++.. ..+.|+.
T Consensus 36 C~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch-~~~Gn~~a~~Rv~~~k~~L~~~Gi~ 92 (124)
T PF02662_consen 36 CSGRVDPEFILRAFEKGADGVLVAGCHPGDCH-YREGNYRAEKRVERLKKLLEELGIE 92 (124)
T ss_pred CCCccCHHHHHHHHHcCCCEEEEeCCCCCCCC-cchhhHHHHHHHHHHHHHHHHcCCC
Confidence 456666666553 47777777 3 322222 33455555555544 3345555
No 160
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=21.40 E-value=92 Score=23.21 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=36.4
Q ss_pred CCeeeee-cccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEe
Q psy7461 56 SNVAPAA-QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126 (149)
Q Consensus 56 ~~i~igA-Qnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCi 126 (149)
.++.|.+ .|.- .|+ .=|-.+..|+++|++.||..--+|.. -.++..+||-||.|-
T Consensus 74 ~~ilv~~g~nfG---~GS-SRE~A~~al~~~Gi~aVIA~SFa~If------------~~N~~n~Gllpl~~~ 129 (131)
T PF00694_consen 74 GDILVVGGENFG---CGS-SREHAAWALKDLGIRAVIAESFARIF------------RRNLINNGLLPLEFP 129 (131)
T ss_dssp TEEEEEE-SSBT---BSS---THHHHHHHHTTEEEEEESSB-HHH------------HHHHHHTT-EEEEES
T ss_pred CCEEEECCCccc---CCc-chHHHHHHHHHhCCeEEEechHHHHH------------HHHHHhCCceEEEec
Confidence 3555554 6643 232 12667888999999999987776432 278999999999874
No 161
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=21.27 E-value=88 Score=27.41 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 103 EPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 103 Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
+..+...+++..|.+.|= .|+|||-|
T Consensus 253 ~I~~eta~~In~ak~~G~-RIiAVGTT 278 (366)
T PRK01424 253 SITPETAEIINKAKQEGR-RIIAVGTT 278 (366)
T ss_pred EECHHHHHHHHHHHHcCC-eEEEEecc
Confidence 355677788999998885 59999976
No 162
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.24 E-value=1.9e+02 Score=23.50 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHhcCCCEEEeccc--ccccccCCChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 80 AMLVDVGIDWVILGHS--ERRNVFGEPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 80 ~mLkd~G~~~viiGHS--ERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
+.|.+.|+++++++.| |--.+=.|--..+-+.+..+.+..+..|++||.+
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~ 77 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSN 77 (285)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCc
Confidence 3456789999877433 2211111111222233333444568888888864
No 163
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=21.16 E-value=1.5e+02 Score=17.93 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=31.4
Q ss_pred eeeecccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHH
Q psy7461 59 APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHA 115 (149)
Q Consensus 59 ~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~a 115 (149)
.+..+++.. ..| |..++ .+.|.+.|++.-++-+||....|-=..+...++++.+
T Consensus 4 ~i~~~~m~~-~~~-~~~~i-f~~l~~~~i~v~~i~t~~~~is~~v~~~~~~~~~~~l 57 (62)
T cd04890 4 EIFDQLMNG-EVG-FLRKI-FEILEKHGISVDLIPTSENSVTLYLDDSLLPKKLKRL 57 (62)
T ss_pred EEeccccCc-ccC-HHHHH-HHHHHHcCCeEEEEecCCCEEEEEEehhhhhHHHHHH
Confidence 444555541 222 33333 4678899999999999997765543333333444433
No 164
>PRK07695 transcriptional regulator TenI; Provisional
Probab=21.14 E-value=1.8e+02 Score=22.28 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.6
Q ss_pred HHHHHhcCCCEEEecc
Q psy7461 79 PAMLVDVGIDWVILGH 94 (149)
Q Consensus 79 ~~mLkd~G~~~viiGH 94 (149)
+..+.+.|++|+.+||
T Consensus 108 a~~a~~~Gadyi~~g~ 123 (201)
T PRK07695 108 AIQAEKNGADYVVYGH 123 (201)
T ss_pred HHHHHHcCCCEEEECC
Confidence 4567789999999998
No 165
>PRK03202 6-phosphofructokinase; Provisional
Probab=21.10 E-value=1.6e+02 Score=25.04 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.2
Q ss_pred EEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCH
Q psy7461 90 VILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKL 130 (149)
Q Consensus 90 viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 130 (149)
+++|-| |...|. +++...+=++.+.++++.-++|||-+-
T Consensus 66 s~Lgts-R~~~~~-~~~~~~~~~~~l~~~~Id~Li~IGGd~ 104 (320)
T PRK03202 66 TILGSA-RFPEFK-DEEGRAKAIENLKKLGIDALVVIGGDG 104 (320)
T ss_pred cccccC-CCCCcC-CHHHHHHHHHHHHHcCCCEEEEeCChH
Confidence 568877 444443 567777888999999999999999763
No 166
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.05 E-value=2.5e+02 Score=23.81 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHhcCCCEEEecc--ccccc-ccCCChHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 79 PAMLVDVGIDWVILGH--SERRN-VFGEPDSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 79 ~~mLkd~G~~~viiGH--SERR~-~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
+.+|.+.|++|+-|.. .+.+. ............++.+.. +=.||+++|.-
T Consensus 241 ~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi 293 (353)
T cd04735 241 VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIA-GRLPLIAVGSI 293 (353)
T ss_pred HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhC-CCCCEEEECCC
Confidence 5788999999998742 12221 112223344455666554 23689999974
No 167
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=20.99 E-value=1.6e+02 Score=24.80 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=49.7
Q ss_pred CeEEEEecchhhHHHHhh---hCCCCeeeeecccccCCCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHH
Q psy7461 35 KVEVVVGVPAIYLEYAKC---LLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEK 111 (149)
Q Consensus 35 ~~~v~i~P~~~~L~~~~~---~~~~~i~igAQnv~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~K 111 (149)
+.+.++.|.......+.. .+..++ -+ |+- .|.-|...|.+.|+++|++.|+.|=+--|.... .+.+.
T Consensus 178 GAD~ifi~~~~~~~ei~~~~~~~~~P~--~~-nv~---~~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa~~----a~~~~ 247 (294)
T TIGR02319 178 GADCIFLEAMLDVEEMKRVRDEIDAPL--LA-NMV---EGGKTPWLTTKELESIGYNLAIYPLSGWMAAAS----VLRKL 247 (294)
T ss_pred CCCEEEecCCCCHHHHHHHHHhcCCCe--eE-EEE---ecCCCCCCCHHHHHHcCCcEEEEcHHHHHHHHH----HHHHH
Confidence 456666666555555433 322232 11 222 234577889999999999999999888887653 56666
Q ss_pred HHHHHHCCCe
Q psy7461 112 VAHALETGLN 121 (149)
Q Consensus 112 v~~al~~gl~ 121 (149)
+...++.|-+
T Consensus 248 ~~~l~~~G~~ 257 (294)
T TIGR02319 248 FTELREAGTT 257 (294)
T ss_pred HHHHHHcCCc
Confidence 6666777753
No 168
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=20.99 E-value=77 Score=23.96 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHhcCC-CEEEecccc
Q psy7461 79 PAMLVDVGI-DWVILGHSE 96 (149)
Q Consensus 79 ~~mLkd~G~-~~viiGHSE 96 (149)
.+.|++.|. +.+++|||-
T Consensus 57 ~~~l~~~~~~~~~lvG~S~ 75 (242)
T PRK11126 57 SQTLQSYNILPYWLVGYSL 75 (242)
T ss_pred HHHHHHcCCCCeEEEEECH
Confidence 355677775 689999994
No 169
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=20.98 E-value=2.9e+02 Score=20.83 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEe
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACI 126 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCi 126 (149)
+++++++|++++++ |.+-. +....-++.+.+.|+.+++=+
T Consensus 72 ~~~~~~~gadgv~v-h~~~~-------~~~~~~~~~~~~~g~~~~~~~ 111 (210)
T TIGR01163 72 IEDFAEAGADIITV-HPEAS-------EHIHRLLQLIKDLGAKAGIVL 111 (210)
T ss_pred HHHHHHcCCCEEEE-ccCCc-------hhHHHHHHHHHHcCCcEEEEE
Confidence 78888999999888 65421 122233455556666655543
No 170
>PLN02334 ribulose-phosphate 3-epimerase
Probab=20.73 E-value=1.4e+02 Score=23.51 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=7.9
Q ss_pred HHHhcCCCEEEec
Q psy7461 81 MLVDVGIDWVILG 93 (149)
Q Consensus 81 mLkd~G~~~viiG 93 (149)
.|.+.|++++.+|
T Consensus 190 ~l~~aGad~vvvg 202 (229)
T PLN02334 190 KAAEAGANVIVAG 202 (229)
T ss_pred HHHHcCCCEEEEC
Confidence 4455566666666
No 171
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=20.70 E-value=4.7e+02 Score=21.29 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=37.0
Q ss_pred CCCCCcccccCHHHHHhcCCCEEEeccc---ccccccCCChHHHHHHHHHHHHCCCeEEEE
Q psy7461 68 VPKGAFTGELSPAMLVDVGIDWVILGHS---ERRNVFGEPDSLIAEKVAHALETGLNVVAC 125 (149)
Q Consensus 68 ~~~Ga~TGeiS~~mLkd~G~~~viiGHS---ERR~~~~Etd~~i~~Kv~~al~~gl~pIlC 125 (149)
....+++|..+.++|..+.++.+++|=+ +.+-++.-+.+...-|-..+....-..++|
T Consensus 161 ~~~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~ 221 (269)
T PRK09802 161 RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVT 221 (269)
T ss_pred cCCCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEE
Confidence 3568999999999999999999999843 333333333344444444444444444443
No 172
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=20.66 E-value=2e+02 Score=24.50 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=36.6
Q ss_pred HHHHhcCCCEEEeccccc-ccccCC--------ChHHHHHHHHHHHHCCCeE-----EEEeCCCHHHHh
Q psy7461 80 AMLVDVGIDWVILGHSER-RNVFGE--------PDSLIAEKVAHALETGLNV-----VACIGEKLEERE 134 (149)
Q Consensus 80 ~mLkd~G~~~viiGHSER-R~~~~E--------td~~i~~Kv~~al~~gl~p-----IlCiGE~~e~r~ 134 (149)
..|+++|++.+-+|.-=- |..|.. +-+..-.-++.|.+.|+.. |+-+||+.+++-
T Consensus 166 ~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~ 234 (366)
T TIGR02351 166 KKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAF 234 (366)
T ss_pred HHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHH
Confidence 789999999998865331 333322 3455555678898988863 566677666653
No 173
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=20.65 E-value=4.2e+02 Score=22.50 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=48.8
Q ss_pred CCCCcccccCHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCC-CeEEEEeCCCHHHHhc-CChHHHHHHhh
Q psy7461 69 PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG-LNVVACIGEKLEEREA-GQTEAVVYKQI 146 (149)
Q Consensus 69 ~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~g-l~pIlCiGE~~e~r~~-g~~~~v~~~Ql 146 (149)
--|..+|.+.+..=-..|+++++|. |+... .+.-+.+.++++.-.+.| =..|+.|.|...+..- -.+.+.+.+++
T Consensus 173 vMGR~~G~Lal~~ala~~ad~iliP--E~~~~-~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~~~~~~~~~~l~~~i 249 (338)
T cd00363 173 VMGRHCGDIALEAGLATGADIIFIP--EEPAA-DEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFIPKPITEKLLAKLV 249 (338)
T ss_pred ECCcCHHHHHHHHHHHhCCCEEEeC--CCCCC-CCCHHHHHHHHHHHHHhcCCeEEEEEeCCCccccccCchHHHHHHHH
Confidence 3699999998888888899999997 55432 344566677777666642 2346667776532111 12345566665
Q ss_pred h
Q psy7461 147 C 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 250 ~ 250 (338)
T cd00363 250 E 250 (338)
T ss_pred H
Confidence 4
No 174
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=20.62 E-value=4.9e+02 Score=21.46 Aligned_cols=88 Identities=19% Similarity=0.104 Sum_probs=48.6
Q ss_pred hhhHHHHhhhCCCCeeeeecccccCCCCCcccccCH-----HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHC
Q psy7461 44 AIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSP-----AMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118 (149)
Q Consensus 44 ~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~-----~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~ 118 (149)
+..+-+..+.+..++.+.| |++.+- +++-++-+. ......+++.+++..+.-= .+++..--+.++.+..
T Consensus 127 a~e~~r~R~~l~a~v~ila-DV~~kh-~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG---~~~~~~~l~~vr~~~~- 200 (254)
T PF03437_consen 127 AGELLRYRKRLGADVKILA-DVHVKH-SSPLATRDLEEAAKDAVERGGADAVIVTGKATG---EPPDPEKLKRVREAVP- 200 (254)
T ss_pred HHHHHHHHHHcCCCeEEEe-eechhh-cccCCCCCHHHHHHHHHHhcCCCEEEECCcccC---CCCCHHHHHHHHhcCC-
Confidence 4444455555555688887 776432 333333222 2224558999999765321 2333333334444443
Q ss_pred CCeEEEEeCCCHHHHhcCChHHHHHHhhh
Q psy7461 119 GLNVVACIGEKLEEREAGQTEAVVYKQIC 147 (149)
Q Consensus 119 gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~ 147 (149)
.||+ || +|-|.+-+.++|.
T Consensus 201 --~PVl-vG-------SGvt~~Ni~~~l~ 219 (254)
T PF03437_consen 201 --VPVL-VG-------SGVTPENIAEYLS 219 (254)
T ss_pred --CCEE-Ee-------cCCCHHHHHHHHH
Confidence 7777 56 5777777777764
No 175
>PRK14072 6-phosphofructokinase; Provisional
Probab=20.58 E-value=3.3e+02 Score=24.03 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=41.3
Q ss_pred CCCcccccCHHHHHh-----cCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCH
Q psy7461 70 KGAFTGELSPAMLVD-----VGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKL 130 (149)
Q Consensus 70 ~Ga~TGeiS~~mLkd-----~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 130 (149)
-|.++|.+....=.. -|+++++|- |..- +-+.+.++++..++..=..|+.|.|-.
T Consensus 188 MGR~aG~LAl~a~lA~~~~~~gad~iliP--E~~~----~~~~~~~~i~~~~~~~~~~ivvVaEG~ 247 (416)
T PRK14072 188 MGRHAGWLAAAAALAKQNPDDAPHLIYLP--ERPF----DEEKFLADVRAIVKRYGYCVVVVSEGI 247 (416)
T ss_pred eCcchhHHHHHHhhccccCCCCccEEEcc--CCCC----CHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 499999997665555 899999997 6542 236777788887776666788888876
No 176
>KOG1637|consensus
Probab=20.48 E-value=96 Score=28.38 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.0
Q ss_pred CCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHh
Q psy7461 102 GEPDSLIAEKVAHALETGLNVVACIGEKLEERE 134 (149)
Q Consensus 102 ~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~ 134 (149)
..++.+|++|+..|+-..+.-|+-||+.+.++.
T Consensus 492 d~t~~tl~kkir~Aqla~yn~i~VVGdkE~~~~ 524 (560)
T KOG1637|consen 492 DPTDSTLRKKIRNAQLAHYNFIFVVGDKEVETG 524 (560)
T ss_pred CCccchHHHHHhhhhhcceeEEEEEchhhhhcC
Confidence 457789999999999999999999999877643
No 177
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=20.48 E-value=2e+02 Score=22.23 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=30.3
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCC
Q psy7461 79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGE 128 (149)
Q Consensus 79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE 128 (149)
+.++.+.|++++++.+-.|-......+-.+-+++.... + .||+.-|-
T Consensus 152 ~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~-ipvi~~GG 198 (234)
T cd04732 152 AKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--G-IPVIASGG 198 (234)
T ss_pred HHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--C-CCEEEecC
Confidence 56788899999999877665555555555544444332 3 56666663
No 178
>KOG4382|consensus
Probab=20.07 E-value=75 Score=26.37 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=23.4
Q ss_pred hcCCCEEEeccc-ccccccCCChHHHHHHHHHHHHCCCeEEEEeC
Q psy7461 84 DVGIDWVILGHS-ERRNVFGEPDSLIAEKVAHALETGLNVVACIG 127 (149)
Q Consensus 84 d~G~~~viiGHS-ERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiG 127 (149)
+..+..+|+-|+ |||+.++ .-..+..||.+++|.=
T Consensus 44 ~~~~~I~ILqHp~E~kh~Ln---------Tt~il~lgL~n~v~~V 79 (276)
T KOG4382|consen 44 DNQVSITILQHPLERKHALN---------TTRILRLGLKNVVFDV 79 (276)
T ss_pred CCcceEEEeeCchHhhhhcc---------hhhHHHhccccceeec
Confidence 445677888887 6666665 2345678888877753
No 179
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.06 E-value=2.1e+02 Score=24.20 Aligned_cols=48 Identities=21% Similarity=0.127 Sum_probs=28.8
Q ss_pred HHHHHhcC-CCEEEecc--ccc---------ccccCCC-hHHHHHHHHHHHHCCCeEEEEeCCC
Q psy7461 79 PAMLVDVG-IDWVILGH--SER---------RNVFGEP-DSLIAEKVAHALETGLNVVACIGEK 129 (149)
Q Consensus 79 ~~mLkd~G-~~~viiGH--SER---------R~~~~Et-d~~i~~Kv~~al~~gl~pIlCiGE~ 129 (149)
+.+|.+.| ++|+-|-| .+. ..++.+. +....++++.+. + .||+++|.-
T Consensus 234 ~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~-ipvi~~G~i 294 (343)
T cd04734 234 AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--D-LPVFHAGRI 294 (343)
T ss_pred HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--C-CCEEeeCCC
Confidence 46778888 89998832 111 1122222 245556677665 3 589999974
Done!