RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7461
         (149 letters)



>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
          Length = 255

 Score =  195 bits (498), Expect = 7e-64
 Identities = 75/148 (50%), Positives = 98/148 (66%), Gaps = 2/148 (1%)

Query: 1   MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAK-CLLPSNV 58
           M RK +VGGNWK NG K  I+ ++D   K   DP  V+VVV  P++++   +  L   N 
Sbjct: 2   MKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKNF 61

Query: 59  APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
             ++QN      GAFTGE+S  ML D+GI+W ILGHSERR  FGE + ++A+KV +ALE 
Sbjct: 62  KISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALEN 121

Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
           GL V+ CIGE LEEREAGQT  V+ KQ+
Sbjct: 122 GLKVILCIGETLEEREAGQTSDVLSKQL 149


>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
           enzyme that catalyzes the interconversion of
           dihydroxyacetone phosphate and
           D-glyceraldehyde-3-phosphate. The reaction is very
           efficient and requires neither cofactors nor metal ions.
           TIM, usually homodimeric, but in some organisms
           tetrameric, is ubiqitous and conserved in function
           across eukaryotes, bacteria and archaea.
          Length = 242

 Score =  193 bits (494), Expect = 2e-63
 Identities = 71/144 (49%), Positives = 83/144 (57%), Gaps = 2/144 (1%)

Query: 5   FWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEY-AKCLLPSNVAPAA 62
             V GNWKMNG   E   +   L     D   VEVVV  P  YL   A+ L  S +   A
Sbjct: 1   PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGA 60

Query: 63  QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
           QN      GAFTGE+S  ML D G  +VI+GHSERR  FGE D  +A+KV  ALE GL  
Sbjct: 61  QNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTP 120

Query: 123 VACIGEKLEEREAGQTEAVVYKQI 146
           + C+GE LEEREAG+TE VV  Q+
Sbjct: 121 ILCVGETLEEREAGKTEEVVAAQL 144


>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional.
          Length = 250

 Score =  189 bits (484), Expect = 9e-62
 Identities = 70/146 (47%), Positives = 90/146 (61%), Gaps = 2/146 (1%)

Query: 3   RKFWVGGNWKMNGNKKEIEGIVDFLKKG-PLDPKVEVVVGVPAIYL-EYAKCLLPSNVAP 60
           RK  + GNWKMN    E + +V+ LK   P    VEV V  P   L    + L  SN+  
Sbjct: 1   RKPIIAGNWKMNKTLAEAKALVEELKAALPDADGVEVAVAPPFTALASVKEALKGSNIKL 60

Query: 61  AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
            AQN +    GAFTGE+S  ML D+G+ +VI+GHSERR  FGE D L+ +KV  AL+ GL
Sbjct: 61  GAQNVHPEDSGAFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGL 120

Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
             + C+GE LEEREAG+TE VV +Q+
Sbjct: 121 TPILCVGETLEEREAGKTEEVVARQL 146


>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase. 
          Length = 242

 Score =  179 bits (457), Expect = 6e-58
 Identities = 67/145 (46%), Positives = 85/145 (58%), Gaps = 2/145 (1%)

Query: 5   FWVGGNWKMNGNKKEIEGIVD-FLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNVAPAA 62
             + GNWKMN    E   +    L     +  VEVVV  P  YL   K  L  SN+   A
Sbjct: 1   PIIIGNWKMNKTLAEALELAKALLAAALKNDGVEVVVAPPFTYLSPVKQALKGSNIKVGA 60

Query: 63  QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
           QN      GAFTGE+S  ML D+G+ +VI+GHSERR  FGE D ++A+KV  AL+ GL  
Sbjct: 61  QNVSAEDSGAFTGEVSAEMLKDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKNGLTP 120

Query: 123 VACIGEKLEEREAGQTEAVVYKQIC 147
           V C+GE LEEREAG+T  V+ +Q+ 
Sbjct: 121 VLCVGETLEEREAGKTLEVLKRQLK 145


>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase.
          Length = 253

 Score =  166 bits (423), Expect = 1e-52
 Identities = 77/147 (52%), Positives = 100/147 (68%), Gaps = 2/147 (1%)

Query: 1   MSRKFWVGGNWKMNGNKKEIEGIVDFLKKG--PLDPKVEVVVGVPAIYLEYAKCLLPSNV 58
           M+RKF+VGGNWK NG  +E++ IV  L +   P +  VEVVV  P ++L   K LL  + 
Sbjct: 1   MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDF 60

Query: 59  APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
             AAQNC+    GAFTGE+S  MLV++GI WVILGHSERR + GE +  + +KVA+AL  
Sbjct: 61  QVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120

Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQ 145
           GL V+AC+GE LE+RE+G T  VV  Q
Sbjct: 121 GLKVIACVGETLEQRESGSTMDVVAAQ 147


>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
           and metabolism].
          Length = 251

 Score =  162 bits (413), Expect = 5e-51
 Identities = 65/148 (43%), Positives = 87/148 (58%), Gaps = 3/148 (2%)

Query: 2   SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGV--PAIYLEY-AKCLLPSNV 58
            RK  V GNWKMN    E + +V+ L    +  + +V V +  P   L   A+ +   N+
Sbjct: 1   MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNI 60

Query: 59  APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
              AQN      GAFTGE+S  ML D+G  +V++GHSERR  FGE D LIA+KV  A E 
Sbjct: 61  KVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEA 120

Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
           GL  + C+GE LEEREAG+T  V+ +Q+
Sbjct: 121 GLTPILCVGETLEEREAGKTLEVLKRQL 148


>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
           kinase/triosephosphate isomerase; Provisional.
          Length = 645

 Score =  146 bits (370), Expect = 7e-42
 Identities = 67/145 (46%), Positives = 90/145 (62%), Gaps = 1/145 (0%)

Query: 3   RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNVAPA 61
           RK  + GNWKMN    E +  V+ LKK   D + EVVV  P   L   K  +  SN+   
Sbjct: 397 RKPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQAEVVVCPPFTALPSVKEAVDGSNIKLG 456

Query: 62  AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
           AQN +   KGA+TGE+S  ML ++G+++VI+GHSERR  FGE D L+ +KV  AL+ GL 
Sbjct: 457 AQNVFYEEKGAYTGEISGPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLT 516

Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
            + C+GE L+ERE+G T  VV  Q+
Sbjct: 517 PILCVGETLDERESGITFDVVRLQL 541


>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
          Length = 315

 Score =  125 bits (315), Expect = 5e-36
 Identities = 73/145 (50%), Positives = 93/145 (64%)

Query: 2   SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
           S KF+VGGNWK NG K  I  ++  L    L+  V+VVV  P +Y++  K  L   +  +
Sbjct: 63  SGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDIS 122

Query: 62  AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
            QN +    GAFTGE+S   L D+G  WVILGHSERR+V GE D  I +K A+AL  GL 
Sbjct: 123 GQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLG 182

Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
           V+ACIGEKLEEREAG+T  V + Q+
Sbjct: 183 VIACIGEKLEEREAGKTFDVCFAQL 207


>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional.
          Length = 260

 Score =  115 bits (289), Expect = 2e-32
 Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 10/153 (6%)

Query: 3   RKFWVGGNWKMNGNKKEIEGIV-DFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSN---- 57
           R+  V GNWKMNG+    + +   F  K   +   EVV+  P+IYLE  + LL +N    
Sbjct: 4   RRPMVAGNWKMNGSAALAQELFKKFAGKL-QNDSAEVVLCPPSIYLESVRQLLEANKEAL 62

Query: 58  ----VAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA 113
               V   AQN  +   GA+TGE+S  ML D G  +VI+GHSERR ++GE  +++AEK A
Sbjct: 63  DGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFA 122

Query: 114 HALETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
            A + GL  + C+GE    REA +T  V+ +++
Sbjct: 123 AAQKHGLTPILCVGESGPAREARRTFEVIAEEL 155


>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional.
          Length = 237

 Score =  111 bits (278), Expect = 4e-31
 Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 15/152 (9%)

Query: 1   MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPK-------VEVVVGVPAIYLEYAKCL 53
           MS  F +  NWKMNG+         FLK+  L  K       +++V+  P   +  +   
Sbjct: 1   MS--FLIVANWKMNGDFSLF---SSFLKE--LSNKLANNEITLKLVICPPFTAMS-SFVE 52

Query: 54  LPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA 113
              N+   AQNC+    G +TGE+S  ML + G  +VILGHSERR+ F E DS I  K  
Sbjct: 53  CNPNIKLGAQNCFYGSSGGYTGEISAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAE 112

Query: 114 HALETGLNVVACIGEKLEEREAGQTEAVVYKQ 145
            A+E+GL  + C+GE LE+RE G T+ V+ +Q
Sbjct: 113 SAIESGLIPIICVGETLEDRENGMTKDVLLEQ 144


>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional.
          Length = 253

 Score =  103 bits (259), Expect = 3e-28
 Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 9   GNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYK 67
           GNWKMNGN   I+ +   + +   D  +V + V   ++Y++     LP  V    QN   
Sbjct: 7   GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITF 66

Query: 68  VPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIG 127
              GA+TGE+S  ML D+G D++++GHSERR++F E D  + +K+   ++T +  V CIG
Sbjct: 67  YDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIG 126

Query: 128 EKLEEREAGQTEAVVYKQICCV 149
           E L++R++G+ + V+  Q+  +
Sbjct: 127 ESLDDRQSGKLKQVLATQLSLI 148


>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase.  Triosephosphate
           isomerase (tim/TPIA) is the glycolytic enzyme that
           catalyzes the reversible interconversion of
           glyceraldehyde 3-phosphate and dihydroxyacetone
           phosphate. The active site of the enzyme is located
           between residues 240-258 of the model
           ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
           active site residue. There is a slight deviation from
           this sequence within the archeal members of this family
           [Energy metabolism, Glycolysis/gluconeogenesis].
          Length = 205

 Score = 78.3 bits (193), Expect = 1e-18
 Identities = 43/138 (31%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 7   VGGNWKM-NGNKKEIEGIVDFLKKGPLDPK-VEVVVGVPAIYLEYAKCLLPSNVAPAAQN 64
           V GNWK  N ++      V  + +       V V V  P + L   K  +   +   AQ+
Sbjct: 2   VIGNWKTYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKREV--EIPVYAQH 59

Query: 65  CYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVA 124
              V  GA TGE+S  ML D+G    ++ HSERR       + I +K+A   E GL  V 
Sbjct: 60  VDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMK----LADIEKKIARLKELGLTSVV 115

Query: 125 CIGEKLEEREAGQTEAVV 142
           C    L    A   E  V
Sbjct: 116 CTNNVLTTAAAAALEPDV 133


>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system
           glucose/sucrose-specific transporter subunit IIB;
           Provisional.
          Length = 355

 Score = 80.1 bits (197), Expect = 1e-18
 Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 9/155 (5%)

Query: 1   MSRKFWVGGNWKM-NGNKKEIE---GIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS 56
           M++K + G N KM  GN + ++    ++ F +K   D  +E+ V    I L+ A     S
Sbjct: 1   MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAAS 60

Query: 57  -----NVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEK 111
                 +   AQN     KG FTGE+SP ML ++GI+ V++GHSERR+V  E D    EK
Sbjct: 61  ETGHPKIKIGAQNMNAKDKGQFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEK 120

Query: 112 VAHALETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
           V  AL+ G   + CIGE LE++    ++ V+  Q+
Sbjct: 121 VLAALKHGFITLLCIGETLEQKNYNISDEVLRTQL 155


>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional.
          Length = 260

 Score = 78.9 bits (194), Expect = 1e-18
 Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 17/158 (10%)

Query: 2   SRKFWVGGNWKMNGNKKEIEGIVDFLKKG-------PLDPKVEVVVGVP---AIYLEYAK 51
            +K + G N KM    K I    DFL K        P D  +E+ V +P   AI    A 
Sbjct: 1   MKKIYFGTNLKM---YKGIADATDFLAKLSELADDIPADKDIELFV-IPSFTAIQDAIAA 56

Query: 52  CLLPSNVAP---AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLI 108
            L   +  P    AQN      G FTG++SP ML ++G   V++GHSERR+ FGE D   
Sbjct: 57  TLAIPHDHPIIIGAQNMNPNDNGQFTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEE 116

Query: 109 AEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
             KV  AL+     + C+GE LE++  G ++ ++  Q+
Sbjct: 117 NAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQL 154


>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional.
          Length = 223

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 62  AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
           AQ+   V  G+ TG + P  + D G    ++ HSERR    +    I   V  A + GL 
Sbjct: 61  AQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLE 116

Query: 122 VVAC 125
            V C
Sbjct: 117 SVVC 120


>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
           metabolism].
          Length = 613

 Score = 29.6 bits (67), Expect = 0.58
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 91  ILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQ 145
           IL  SE + +F E   L  + V   LE    VV  I      REA + +A+V + 
Sbjct: 112 ILNESESKVIFVENQEL-LDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEV 165


>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
          Length = 434

 Score = 29.5 bits (66), Expect = 0.71
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 92  LGHSERRNVFGEP---DSLIAEKVAHALETGLNVVACIGEKLEE 132
           LG  +R  VF EP    S +   +A   ++ +NV+A IGE+  E
Sbjct: 154 LGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGRE 197


>gnl|CDD|132239 TIGR03195, 4hydrxCoA_B, 4-hydroxybenzoyl-CoA reductase, beta
           subunit.  This model represents the second largest
           chain, beta, of the enzyme 4-hydroxybenzoyl-CoA
           reductase. In species capable of degrading various
           aromatic compounds by way of benzoyl-CoA, this enzyme
           can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
          Length = 321

 Score = 27.9 bits (62), Expect = 2.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)

Query: 58  VAPAAQNCYKVPKGAFTGELSPAMLV-DVGIDWVILGHSERRNV 100
           VAP +  CY     AF+G+++PA+LV D   +  I+G +  R V
Sbjct: 146 VAPKSDRCY----AAFSGDVAPALLVLDAEAE--IVGPAGVRRV 183


>gnl|CDD|184135 PRK13551, PRK13551, agmatine deiminase; Provisional.
          Length = 362

 Score = 27.2 bits (61), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 38 VVVGVPAIYLEYAKCLLPSNV 58
          V +GV A     A+  LP NV
Sbjct: 57 VTMGVSAAQYANARARLPDNV 77


>gnl|CDD|179622 PRK03646, dadX, alanine racemase; Reviewed.
          Length = 355

 Score = 27.0 bits (60), Expect = 3.8
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)

Query: 109 AEKVAHALET--GLNVVACIGEKLEEREAG 136
            E++  AL    G   V  + E +  RE G
Sbjct: 42  IERIWSALGATDGF-AVLNLEEAITLRERG 70


>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein.  This family includes proteins
           related to Mpp10 (M phase phosphoprotein 10). The U3
           small nucleolar ribonucleoprotein (snoRNP) is required
           for three cleavage events that generate the mature 18S
           rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
           depletion of Mpp10, a U3 snoRNP-specific protein, halts
           18S rRNA production and impairs cleavage at the three U3
           snoRNP-dependent sites.
          Length = 613

 Score = 26.1 bits (57), Expect = 8.8
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 31  PLDPKVEVVVGVPAIYLEYAKCLLPSNVAP-AAQNCYKVPK 70
           P   +V++V   PAI +E       S+ A  A +  YK  K
Sbjct: 505 PAREEVKIVSNTPAIAMEEVAPTAVSDAALLAPEEIYKKMK 545


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,760,417
Number of extensions: 709034
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 30
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)