RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7461
(149 letters)
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Length = 259
Score = 252 bits (645), Expect = 2e-86
Identities = 104/146 (71%), Positives = 122/146 (83%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
M+RKF VGGNWKMNG+KK+I I+ FLK GPL+ EVVVGVPAIYLE + +P+++
Sbjct: 1 MARKFVVGGNWKMNGDKKQINEIIGFLKSGPLNQDTEVVVGVPAIYLELVRTCVPASIGV 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQNCYKVPKGAFTGE+SPAM+ DVG DWVILGHSERR +FGE D LIAEKV HALE+GL
Sbjct: 61 AAQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGL 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V+ACIGE LEEREAG+TE VV++Q
Sbjct: 121 KVIACIGETLEEREAGKTEEVVFRQT 146
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Caenorhabditis elegans}
SCOP: c.1.1.1
Length = 275
Score = 249 bits (639), Expect = 3e-85
Identities = 94/146 (64%), Positives = 115/146 (78%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
++RKF+VGGNWKMNG+ ++GIV FL + V+VVV PA YL YAK L + V
Sbjct: 21 LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 80
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQNCYKVPKGAFTGE+SPAM+ D+G++WVILGHSERR+VFGE D+LIAEK HALE G+
Sbjct: 81 AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 140
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
VV CIGEKLEEREAG T+ V ++Q+
Sbjct: 141 KVVFCIGEKLEEREAGHTKDVNFRQL 166
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the
ligand-free state, conformational heterogeneity,
TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1
PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1*
8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A*
1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Length = 248
Score = 246 bits (631), Expect = 2e-84
Identities = 85/145 (58%), Positives = 104/145 (71%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
SRKF+VGGNWKMNG KK + ++ L + EVV P Y+++A+ L +A A
Sbjct: 3 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVA 62
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQNCYKV GAFTGE+SP M+ D G WV+LGHSERR+VFGE D LI +KVAHAL GL
Sbjct: 63 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 122
Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
V+ACIGEKL+EREAG TE VV++Q
Sbjct: 123 VIACIGEKLDEREAGITEKVVFEQT 147
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis,
glycolysis; 2.40A {Rhipicephalus microplus}
Length = 249
Score = 246 bits (631), Expect = 2e-84
Identities = 93/145 (64%), Positives = 113/145 (77%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
+R+F VGGNWKM+G+K I I + LK LDP VEV+V PA YL+Y + LLP +VA A
Sbjct: 3 ARRFCVGGNWKMHGSKNSIRDICNTLKGASLDPNVEVIVACPAPYLDYCRSLLPPSVALA 62
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQNCYKV +GAFTGE+SP M+ D G WVILGHSERR+VF E D LI EK+ HALE+GLN
Sbjct: 63 AQNCYKVEQGAFTGEISPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGLN 122
Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
V+ACIGE LE+REAG+TE V ++QI
Sbjct: 123 VIACIGELLEDREAGRTEEVCFRQI 147
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate,
META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A
{Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A
1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A
3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A
3pvf_A 3py2_A 2vfd_A 2vfe_A*
Length = 248
Score = 241 bits (618), Expect = 2e-82
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVA 59
M+RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFS 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
QN K G++TGE+S + D+ I++VI+GH ERR F E D + EK+ +L+
Sbjct: 61 TGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNN 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
L V C GE LE+RE +T V+ KQ+
Sbjct: 121 LKAVVCFGESLEQREQNKTIEVITKQV 147
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone
phosphate, michaelis complex; HET: FTR 13P; 1.20A
{Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A*
1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Length = 247
Score = 240 bits (615), Expect = 5e-82
Identities = 71/146 (48%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNVAP 60
+R F+VGGN+K+NG+K+ I+ IV+ L + VEVV+ PA YL+Y+ L+ V
Sbjct: 1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTV 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN Y GAFTGE S + DVG +VILGHSERR+ F E D IA+K AL G+
Sbjct: 61 GAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGV 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V+ CIGE LEE++AG+T VV +Q+
Sbjct: 121 GVILCIGETLEEKKAGKTLDVVERQL 146
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia
intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Length = 257
Score = 239 bits (612), Expect = 2e-81
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLL-PSNVAP 60
+R+ ++GGN+K NG+ I+ V + + V+VV+ A++L A +
Sbjct: 3 ARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI 62
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQN Y GA+TGE S ML D+G+ VI+GHSERR + GE D A+K ALE G+
Sbjct: 63 AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V+ C+GE L+ER+A +T V Q+
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQL 148
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas
vaginalis} PDB: 3qsr_A
Length = 255
Score = 237 bits (606), Expect = 2e-80
Identities = 62/147 (42%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Query: 1 MSRKFWVGGNWKMNGNKK-EIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVA 59
R F+VGGNWK N E E +V+ L ++ VEVVV P ++L + L +
Sbjct: 3 HMRTFFVGGNWKANPKTVQEAEKLVEMLNGAKVEGNVEVVVAAPFVFLPTLQQKLRKDWK 62
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
+A+N + P GAFTGE++ M+ GI+W ILGHSERR++ E D +A K ALE G
Sbjct: 63 VSAENVFTKPNGAFTGEVTVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENG 122
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
+ ++ C GE L EREAG+ V QI
Sbjct: 123 MKIIYCCGEHLSEREAGKASEFVSAQI 149
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition
state analogue, glycolysis, pentose shunt,
gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A
{Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A
2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A
1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Length = 251
Score = 236 bits (605), Expect = 2e-80
Identities = 58/147 (39%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNVA 59
+ NWK NG IE +V + + V+ VV +++ + L
Sbjct: 3 AKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYV 62
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
+AQN GAFTGE+S +L D+G+ WVILGHSERR +GE D ++A+KV+ A + G
Sbjct: 63 ISAQNAI-AKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQG 121
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
V+ACIGE L++REA QT VV Q
Sbjct: 122 FMVIACIGETLQQREANQTAKVVLSQT 148
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washingto niaid, I structural genomics;
1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 235 bits (601), Expect = 2e-79
Identities = 60/150 (40%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLL----PS 56
MSRK++VGGN+K NG K+ ++ ++D K+ EV V ++++ K P
Sbjct: 22 MSRKYFVGGNFKCNGTKESLKTLIDSFKQVE-SSNSEVYVFPTSLHISLVKEFFGNDHPG 80
Query: 57 NVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHAL 116
+QN GAFTGE+S ML D+ +D ++GHSERR + E D ++ KV L
Sbjct: 81 VFKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGL 140
Query: 117 ETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
E GL +V CIGE L ERE G+T V+ KQ+
Sbjct: 141 ENGLKIVLCIGESLSERETGKTNDVIQKQL 170
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome,
TIM-barrel, gluconeogenesis, lipid synthesis, atomic
resolution; 1.15A {Trypanosoma brucei brucei} PDB:
2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A
1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A
2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Length = 250
Score = 232 bits (594), Expect = 1e-78
Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 3/148 (2%)
Query: 1 MS-RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNV 58
MS + NWK NG+++ + ++D ++ V+ VV ++L K L
Sbjct: 1 MSKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKF 60
Query: 59 APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AAQN GAFTGE+S +L D G++W++LGHSERR +GE + ++A+KVA A+ +
Sbjct: 61 VIAAQNAI-AKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVAS 119
Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
G V+ACIGE L+ERE+G+T VV QI
Sbjct: 120 GFMVIACIGETLQERESGRTAVVVLTQI 147
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability;
1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Length = 261
Score = 225 bits (576), Expect = 8e-76
Identities = 68/153 (44%), Positives = 92/153 (60%), Gaps = 9/153 (5%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLK---KGPLDPKVEVVVGVPAIYLEYAKCLLP--- 55
+ KF VGGNWK NG IE + + L KVEV+VGVP IY+ + +L
Sbjct: 3 AGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEA 62
Query: 56 --SNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA 113
+N+ +A+N + GA+TGE+ MLVD + +VILGHSERR +F E + +AEKV
Sbjct: 63 NGANILVSAENAW-TKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVK 121
Query: 114 HALETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
A++ GL V+ACIGE +R A QTE VV Q+
Sbjct: 122 VAIDAGLKVIACIGETEAQRIANQTEEVVAAQL 154
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A
{Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Length = 255
Score = 217 bits (556), Expect = 7e-73
Identities = 63/146 (43%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLL-PSNVAP 60
R V GNWK+NG++ + +V L+K V + P +Y++ AK S++
Sbjct: 2 RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN GAFTGE S AML D+G ++I+GHSERR E D LIA+K A E GL
Sbjct: 62 GAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGL 121
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
V CIGE E EAG+TE V +QI
Sbjct: 122 TPVLCIGETEAENEAGKTEEVCARQI 147
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A
{Thermotoga maritima} SCOP: c.1.1.1
Length = 255
Score = 216 bits (554), Expect = 1e-72
Identities = 62/148 (41%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKG-PLDPKVEVVVGVPAIYLEYAKCLL-PSNV 58
++RK + GNWKM+ E + V L + E+VV P L +L N+
Sbjct: 1 ITRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNI 60
Query: 59 APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AQN + +GAFTGE+SP ML ++G+++VI+GHSERR +F E D I KV LE
Sbjct: 61 KLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEK 120
Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
G+ + C+GE LEERE G T VV KQ+
Sbjct: 121 GMTPILCVGETLEEREKGLTFCVVEKQV 148
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome,
gluconeogenesis, lipid synthesis, monomeric mutant,
glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Length = 244
Score = 214 bits (548), Expect = 8e-72
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNVA 59
+ NWK NG++ + +++ L D V+ VV +++ K L
Sbjct: 3 SKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQ 62
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
AAQN + A L D GI WV+LGHSERR +GE + ++AEKVA A G
Sbjct: 63 IAAQNAG--------NADALASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAG 114
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQI 146
+V+ C+GE EEREAG+T AVV Q+
Sbjct: 115 FHVIVCVGETNEEREAGRTAAVVLTQL 141
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis,
pentose; HET: CIT; 1.90A {Staphylococcus aureus}
Length = 254
Score = 212 bits (542), Expect = 1e-70
Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLL----PSNV 58
R + GNWKMN +E + V+ L P +VE V+ PAI L+ + +
Sbjct: 3 RTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGL 62
Query: 59 APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AQN Y GAFTGE SP L D+G+ +V++GHSERR +F E D I +K +
Sbjct: 63 EIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKH 122
Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
G+ + C+GE EERE+G+ VV +Q+
Sbjct: 123 GMTPIICVGETDEERESGKANDVVGEQV 150
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A
{Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Length = 256
Score = 204 bits (522), Expect = 9e-68
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKG-PLDPKVEVVVGVPAIYLEYAKCLLP---SNV 58
R V GNWK+NG+K+ + +++ L V+V V PA++++ A+ L S +
Sbjct: 2 RHPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAI 61
Query: 59 APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AQN GAFTG++SPAML + G +I+GHSERR E D +A+K A E
Sbjct: 62 ILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKEN 121
Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
GL V CIGE + EAG+T AV +Q+
Sbjct: 122 GLTPVLCIGESDAQNEAGETMAVCARQL 149
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW,
gluconeogenesis, glycolysis, pentose shunt; 1.60A
{Bartonella henselae}
Length = 275
Score = 200 bits (511), Expect = 7e-66
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLK--KGPLDPKVEVVVGVPAIYLEYAKCLLP-SN 57
+ + ++ GNWKMNG + + + L E ++ VPA L A +L N
Sbjct: 24 PNIRPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGGEN 83
Query: 58 VAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALE 117
+ QNC+ G +TG++S ML + G VI+GHSERR V+ E D+++ KV A
Sbjct: 84 ILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWR 143
Query: 118 TGLNVVACIGEKLEEREAGQTEAVVYKQI 146
GL + C+GE LEER++ + V+ +Q+
Sbjct: 144 AGLVALICVGETLEERKSNKVLDVLTRQL 172
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom
initiative, RSGI, structural genomics; 1.60A {Thermus
thermophilus}
Length = 250
Score = 195 bits (499), Expect = 3e-64
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 1/145 (0%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLP-SNVAPA 61
R+ V GNWKM+ E LK+ + E V L AK +L + V
Sbjct: 2 RRVLVAGNWKMHKTPSEARVWFAELKRLLPPLQSEAAVLPAFPILPVAKEVLAETQVGYG 61
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQ+ +GA+TGE+S ML D+G + I+GHSERR GE D+L+AEK LE G+
Sbjct: 62 AQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGIT 121
Query: 122 VVACIGEKLEEREAGQTEAVVYKQI 146
+ C+GE LE RE G+ +Q+
Sbjct: 122 PILCVGEPLEVREKGEAVPYTLRQL 146
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt,
gluconeogenesis, lipid synthesis, fatty acid
biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Length = 233
Score = 195 bits (497), Expect = 3e-64
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 6/143 (4%)
Query: 7 VGGNWKMNGNKKEIEGIVDFLKKGPLDPK-VEVVVGVPAIYLEYAKCLLPSNVAPAAQNC 65
N+K + + L+K V V L + QN
Sbjct: 4 AMANFKSAMPIFKSHAYLKELEKTLKPQHFDRVFVFPDFFGLLPNS---FLHFTLGVQNA 60
Query: 66 YKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVAC 125
Y GAFTGE++ L ++ I +++GHSERR + E S + EK +V C
Sbjct: 61 YPRDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFKIVYC 120
Query: 126 IGEKLEEREAG--QTEAVVYKQI 146
IGE+L RE G + + +Q+
Sbjct: 121 IGEELTTREKGFKAVKEFLSEQL 143
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium
tuberculosis} PDB: 3tao_A* 3gvg_A
Length = 267
Score = 195 bits (497), Expect = 1e-63
Identities = 59/153 (38%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 1 MSRKFWVGGNWKMNGNKKE----IEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLL-- 54
MSRK + GNWKMN N E ++ I L D +V+V V P L + L+
Sbjct: 1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYD-RVDVAVIPPFTDLRSVQTLVDG 59
Query: 55 -PSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA 113
+ AQ+ GA+TG++S A L +G +V++GHSERR E D+L+A K A
Sbjct: 60 DKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAA 119
Query: 114 HALETGLNVVACIGEKLEEREAGQTEAVVYKQI 146
AL+ GL + CIGE L+ REAG A +Q+
Sbjct: 120 TALKHGLTPIVCIGEHLDVREAGNHVAHNIEQL 152
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic
triose-phosphate, glycolysis; 2.40A {Geobacillus
stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Length = 252
Score = 193 bits (494), Expect = 1e-63
Identities = 64/146 (43%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKG-PLDPKVEVVVGVPAIYLEYAKCLL-PSNVAP 60
RK + GNWKMNG E V+ +K P +V VV P ++L+ +++
Sbjct: 1 RKPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKI 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQ + +GA+TGE+SP ML D+G+ +VILGHSERR +F E D + +KV A GL
Sbjct: 61 GAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGL 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
+ C GE LEEREAGQT AVV Q+
Sbjct: 121 IPIICCGESLEEREAGQTNAVVASQV 146
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel, TPIA; 2.35A {Burkholderia thailandensis}
Length = 272
Score = 192 bits (489), Expect = 1e-62
Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKG--PLDPKVEVVVGVPAIYLEYAKCLLP-SN 57
R V GNWKM+G + ++ + +G + V + V VP YL A+ L
Sbjct: 24 KQRIKRVIGNWKMHGRLSGNQALLTEVAQGAQAVHDNVAIGVCVPFPYLAQAQAQLQGGR 83
Query: 58 VAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALE 117
V+ +Q+ +GA+TGE++ M+ + G + I+GHSERR GE + +A K AL
Sbjct: 84 VSWGSQDVSAHEQGAYTGEVAAGMVAEFGAAYAIVGHSERRAYHGESNETVAAKARRALA 143
Query: 118 TGLNVVACIGEKLEEREAGQTEAVVYKQI 146
GL + C+GE L EREAG TE VV Q+
Sbjct: 144 AGLTPIVCVGETLAEREAGTTEQVVGAQL 172
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics
center for infectious disease, S pathogenic fungus,
eukaryote; 2.20A {Coccidioides immitis RS}
Length = 310
Score = 180 bits (458), Expect = 2e-57
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 27/171 (15%)
Query: 3 RKFWVGGNWKMNGNKKE----IEGIVDFLKKGPLD---PKVEVVVGVPAIYLEYAKCLL- 54
K + + KM I+G+++ ++ + + + + +
Sbjct: 35 PKTLLIISLKMYFTPSRTIDYIQGLLEPRNDIIRQENRSRLLLALIPDFLTIYPCSEAIK 94
Query: 55 --------------PSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNV 100
P + AQ+C+ G +TGE+SP L D+ + V LGH+ERR +
Sbjct: 95 EFESNLAAPQDADTPPPLLLGAQDCFWDSLGPYTGEISPVCLRDMNVSIVELGHAERRAI 154
Query: 101 FGEPDSLIAEKVAHALETGLNVVACIGE-----KLEEREAGQTEAVVYKQI 146
FGE D +A K A A + GL + CIGE + G+ QI
Sbjct: 155 FGETDQQVARKAAAAADQGLIPLVCIGEVSTLGPIVSEAIGRAVGECEAQI 205
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 162 bits (413), Expect = 1e-51
Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 1 MSRKFWVGGNWKMNGNK--KEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNV 58
M + N+K G K + ++ + V +VV + L ++
Sbjct: 1 MRLPI-LIINFKAYGEAAGKRAVELAKAAERAARELGVNIVVAPNHLELGLVS--QSVDI 57
Query: 59 APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AQ GA T +S + + G VIL HSE + +A VA A
Sbjct: 58 PVYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLND----LARLVAKAKSL 113
Query: 119 GLNVVACIGEKLEEREAGQTEAVV 142
GL+VV C + A
Sbjct: 114 GLDVVVCAPDPRTSLAAAALGPHA 137
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 146 bits (371), Expect = 2e-45
Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 8/138 (5%)
Query: 7 VGGNWKMNGNKKEIEG--IVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQN 64
+ N+K G I +K + + + V + L + N+ AQ+
Sbjct: 3 IVINYKTYNESIGNRGLEIAKIAEKVSEESGITIGVAPQFVDLRMI--VENVNIPVYAQH 60
Query: 65 CYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVA 124
+ G+ TG + + D G ++ HSE+R + + I + GL +
Sbjct: 61 IDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLAD----IEAVINKCKNLGLETIV 116
Query: 125 CIGEKLEEREAGQTEAVV 142
C +
Sbjct: 117 CTNNINTSKAVAALSPDC 134
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 145 bits (367), Expect = 1e-44
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 3 RKFWVGGNWKMNGNK--KEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
++ + N+K K I +K + V +VV + L + +
Sbjct: 5 KEPIIAINFKTYIEATGKRALEIAKAAEKVYKETGVTIVVAPQLVDLRMIAESV--EIPV 62
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQ+ + G+ TG + P + + G +L HSE R + + + + A E GL
Sbjct: 63 FAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILAD----LEAAIRRAEEVGL 118
Query: 121 NVVACIGEKLEEREAGQTEAVV 142
+ C
Sbjct: 119 MTMVCSNNPAVSAAVAALNPDY 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 6e-05
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 11 WKMNGNKKEIEGIVDFLKKGPL---DPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQ--NC 65
W + K ++ +V+ L K L PK E + +P+IYLE K L + A +
Sbjct: 396 WF-DVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYLEL-KVKLENEYALHRSIVDH 452
Query: 66 YKVPKGAFTGELSPAMLVDVGIDWVI------LGHSERRNVFGEP--D-SLIAEKVAHAL 116
Y +PK + +L P L D I + H ER +F D + +K+ H
Sbjct: 453 YNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD- 510
Query: 117 ETGLNVVACIGEKLEEREAGQTEAVVYKQ-IC 147
T N I L++ + YK IC
Sbjct: 511 STAWNASGSILNTLQQLK-------FYKPYIC 535
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 29.3 bits (65), Expect = 0.48
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 58 VAPAAQ-NCYKV--PKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAH 114
VAP A+ YK +G FT +L AM V ++ S + I+
Sbjct: 132 VAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASFG 191
Query: 115 ALETGLNVVACIG 127
A+ G+ V A G
Sbjct: 192 AMMKGVLVSASAG 204
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain,
pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP
KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Length = 367
Score = 27.8 bits (63), Expect = 1.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 109 AEKVAHALETGLNV--VACIGEKLEEREAG 136
A VA A++ ++ V+ I E +E R+AG
Sbjct: 48 AVAVAKAIQDDVDGFCVSNIDEAIELRQAG 77
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure
for C-terminal domain, internal/external aldimine forms,
isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas
aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Length = 357
Score = 27.8 bits (63), Expect = 1.5
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 109 AEKVAHALETGLNV--VACIGEKLEEREAG 136
A + A AL + VACI E LE REAG
Sbjct: 41 AVRCAEALAAEADGFAVACIEEGLELREAG 70
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center
for infect disease, iodide SOAK, LLP, CAT-scratch DI
isomerase; HET: LLP; 2.04A {Bartonella henselae}
Length = 376
Score = 25.5 bits (57), Expect = 7.4
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 109 AEKVAHALE----TGLNVVACIGEKLEEREAGQTEAVVY 143
A K+A AL VA I E L+ + ++
Sbjct: 59 AHKIAPALYQAGCRTF-FVAQIEEALQLKAVLPENVMIA 96
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 25.7 bits (55), Expect = 9.0
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 14/90 (15%)
Query: 18 KEIEGIVDFLKKGPLDPKVEVVVGVP--AIYLEYAKCLLPSNVAPA-------AQNCYKV 68
+E + P + + + VP AI + +L + Q+ KV
Sbjct: 1022 AAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKV 1081
Query: 69 PKGAF-----TGELSPAMLVDVGIDWVILG 93
P + + + + V D I+
Sbjct: 1082 PLHSKGTVVGYTSIGKNVSIQVLFDNEIIA 1111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.422
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,393,222
Number of extensions: 138574
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 41
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)