RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7461
(149 letters)
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 246
Score = 124 bits (313), Expect = 5e-37
Identities = 85/148 (57%), Positives = 105/148 (70%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
SRKF+VGGNWKMNG KK + ++ L + EVV P Y+++A+ L +A A
Sbjct: 1 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVA 60
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
AQNCYKV GAFTGE+SP M+ D G WV+LGHSERR+VFGE D LI +KVAHAL GL
Sbjct: 61 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 120
Query: 122 VVACIGEKLEEREAGQTEAVVYKQICCV 149
V+ACIGEKL+EREAG TE VV++Q +
Sbjct: 121 VIACIGEKLDEREAGITEKVVFEQTKVI 148
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 257
Score = 119 bits (298), Expect = 1e-34
Identities = 94/148 (63%), Positives = 115/148 (77%)
Query: 1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
++RKF+VGGNWKMNG+ ++GIV FL + V+VVV PA YL YAK L + V
Sbjct: 9 LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 68
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AAQNCYKVPKGAFTGE+SPAM+ D+G++WVILGHSERR+VFGE D+LIAEK HALE G+
Sbjct: 69 AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 128
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICC 148
VV CIGEKLEEREAG T+ V ++Q+
Sbjct: 129 KVVFCIGEKLEEREAGHTKDVNFRQLQA 156
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima
[TaxId: 2336]}
Length = 252
Score = 116 bits (290), Expect = 2e-33
Identities = 64/148 (43%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPK-VEVVVGVPAIYLEY-AKCLLPSNVA 59
+RK + GNWKM+ E + V L D K E+VV P L + L N+
Sbjct: 1 TRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIK 60
Query: 60 PAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETG 119
AQN + +GAFTGE+SP ML ++G+++VI+GHSERR +F E D I KV LE G
Sbjct: 61 LGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKG 120
Query: 120 LNVVACIGEKLEEREAGQTEAVVYKQIC 147
+ + C+GE LEERE G T VV KQ+
Sbjct: 121 MTPILCVGETLEEREKGLTFCVVEKQVR 148
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 247
Score = 109 bits (272), Expect = 6e-31
Identities = 71/148 (47%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPS-NVAP 60
+R F+VGGN+K+NG+K+ I+ IV+ L + VEVV+ PA YL+Y+ L+ V
Sbjct: 1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTV 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN Y GAFTGE S + DVG +VILGHSERR+ F E D IA+K AL G+
Sbjct: 61 GAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGV 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICC 148
V+ CIGE LEE++AG+T VV +Q+
Sbjct: 121 GVILCIGETLEEKKAGKTLDVVERQLNA 148
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
histolytica [TaxId: 5759]}
Length = 260
Score = 102 bits (255), Expect = 3e-28
Identities = 68/155 (43%), Positives = 91/155 (58%), Gaps = 9/155 (5%)
Query: 2 SRKFWVGGNWKMNGNKKEIEGIVD---FLKKGPLDPKVEVVVGVPAIYLEYAKCLLP--- 55
+ KF VGGNWK NG IE + L KVEV+VGVP IY+ + +L
Sbjct: 2 AGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEA 61
Query: 56 --SNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVA 113
+N+ +A+N + GA+TGE+ MLVD + +VILGHSERR +F E + +AEKV
Sbjct: 62 NGANILVSAENAW-TKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVK 120
Query: 114 HALETGLNVVACIGEKLEEREAGQTEAVVYKQICC 148
A++ GL V+ACIGE +R A QTE VV Q+
Sbjct: 121 VAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKA 155
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 102 bits (254), Expect = 3e-28
Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKG-PLDPKVEVVVGVPAIYLEYAKCL-LPSNVAP 60
R V GNWK+NG++ + +V L+K V + P +Y++ AK S++
Sbjct: 2 RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQN GAFTGE S AML D+G ++I+GHSERR E D LIA+K A E GL
Sbjct: 62 GAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGL 121
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
V CIGE E EAG+TE V +QI V
Sbjct: 122 TPVLCIGETEAENEAGKTEEVCARQIDAV 150
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 101 bits (253), Expect = 4e-28
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAKCLLPSNVAPA 61
RK++V NWK NG + I+ + + DP K++VVV +++ ++ + LL S +
Sbjct: 1 RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFSTG 60
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
QN K G++TGE+S + D+ I++VI+GH ERR F E D + EK+ +L+ L
Sbjct: 61 IQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLK 120
Query: 122 VVACIGE 128
V C GE
Sbjct: 121 AVVCFGE 127
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana
[TaxId: 5665]}
Length = 249
Score = 100 bits (250), Expect = 1e-27
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
+ NWK NG IE +V + + V+ VV +++ + L + +
Sbjct: 3 PQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVIS 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
GAFTGE+S +L D+G+ WVILGHSERR +GE D ++A+KV+ A + G V
Sbjct: 63 AQNAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICC 148
+ACIGE L++REA QT VV Q
Sbjct: 123 IACIGETLQQREANQTAKVVLSQTSA 148
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus
[TaxId: 90736]}
Length = 255
Score = 97.7 bits (242), Expect = 2e-26
Identities = 60/151 (39%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKG-PLDPKVEVVVGVPAIYLEYAKCLL---PSNV 58
R V GNWK+NG+K+ + +++ L V+V V PA++++ A+ L S +
Sbjct: 1 RHPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAI 60
Query: 59 APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
AQN GAFTG++SPAML + G +I+GHSERR E D +A+K A E
Sbjct: 61 ILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKEN 120
Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQICCV 149
GL V CIGE + EAG+T AV +Q+ V
Sbjct: 121 GLTPVLCIGESDAQNEAGETMAVCARQLDAV 151
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei
[TaxId: 5691]}
Length = 249
Score = 97.3 bits (241), Expect = 3e-26
Identities = 55/147 (37%), Positives = 85/147 (57%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAA 62
+ NWK NG+++ + ++D ++ V+ VV ++L K L A
Sbjct: 3 PQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIA 62
Query: 63 QNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNV 122
GAFTGE+S +L D G++W++LGHSERR +GE + ++A+KVA A+ +G V
Sbjct: 63 AQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMV 122
Query: 123 VACIGEKLEEREAGQTEAVVYKQICCV 149
+ACIGE L+ERE+G+T VV QI +
Sbjct: 123 IACIGETLQERESGRTAVVVLTQIAAI 149
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 251
Score = 96.9 bits (240), Expect = 4e-26
Identities = 64/147 (43%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 3 RKFWVGGNWKMNGNKKEIEGIVDFLKKG-PLDPKVEVVVGVPAIYLEYA-KCLLPSNVAP 60
RK + GNWKMNG E V+ +K P +V VV P ++L+ + +++
Sbjct: 1 RKPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKI 60
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQ + +GA+TGE+SP ML D+G+ +VILGHSERR +F E D + +KV A GL
Sbjct: 61 GAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGL 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQIC 147
+ C GE LEEREAGQT AVV Q+
Sbjct: 121 IPIICCGESLEEREAGQTNAVVASQVE 147
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 70.7 bits (172), Expect = 3e-16
Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 8/142 (5%)
Query: 3 RKFWVGGNWKMNGNK--KEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
R + N+K G K + ++ + V +VV + L ++
Sbjct: 2 RLPILIINFKAYGEAAGKRAVELAKAAERAARELGVNIVVAPNHLELGLVS--QSVDIPV 59
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQ GA T +S + + G VIL HSE + +A VA A GL
Sbjct: 60 YAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLND----LARLVAKAKSLGL 115
Query: 121 NVVACIGEKLEEREAGQTEAVV 142
+VV C + A
Sbjct: 116 DVVVCAPDPRTSLAAAALGPHA 137
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 64.6 bits (156), Expect = 4e-14
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 8/143 (5%)
Query: 3 RKFWVGGNWKMNGNKKEIEG--IVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
++ + N+K I +K + V +VV + +
Sbjct: 4 KEPIIAINFKTYIEATGKRALEIAKAAEKVYKETGVTIVVAPQLVD--LRMIAESVEIPV 61
Query: 61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
AQ+ + G+ TG + P + + G +L HSE R + + + + A E GL
Sbjct: 62 FAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILAD----LEAAIRRAEEVGL 117
Query: 121 NVVACIGEKLEEREAGQTEAVVY 143
+ C
Sbjct: 118 MTMVCSNNPAVSAAVAALNPDYV 140
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Length = 310
Score = 25.8 bits (56), Expect = 2.0
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 64 NCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDS 106
+ + + EL L + GI++V++ + +
Sbjct: 117 KGVWLTERVWQPEL-VKSLREAGIEYVVVDDYHFMSAGLSKEE 158
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 25.0 bits (54), Expect = 3.6
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 1 MSRKFWVG-----GNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEY-AKCLL 54
+ RK G W + K+ + + VG+ +L+Y A +
Sbjct: 77 VRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGI---FLDYEAGMVS 133
Query: 55 PSNVAPAAQNCYKVPKGAFTGELSPA 80
N+ Y + AFTG L P
Sbjct: 134 FYNITDHGSLIYSFSECAFTGPLRPF 159
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 24.3 bits (52), Expect = 5.4
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 62 AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPD----SLIAEKVAHALE 117
+ + A E+ ++V I V+ S F + D + ++ L
Sbjct: 92 VFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 151
Query: 118 T 118
T
Sbjct: 152 T 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.422
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 584,108
Number of extensions: 25737
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 17
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)