RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7463
(319 letters)
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 69.1 bits (170), Expect = 3e-15
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFKYQCH 210
+ C C + FS +L H+ H E+ + C++C +K++R + K H ++ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHRDIQHILPILED 62
Query: 211 ICLKCTSRKNYLKRHIIMMHT 231
+ S+ +L+ + +
Sbjct: 63 KVEELLSKNYHLENEVARLKK 83
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 65.6 bits (161), Expect = 1e-13
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERIA---- 179
+C C F + + H H G+K + C +C K + K +L HE
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HTGEKP-FECPKCGKCYFR----KENLLEHEARNCMNR 62
Query: 180 ----YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
+ C+VC + + R + ++HM H G Y+C C + +K L+ H+I +H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 52.9 bits (128), Expect = 4e-09
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHERI-----AYQCNVCDKKYSRLSDYKIHM---NMHNG 204
C C K+F K +L +H R ++C C K Y R + H M+
Sbjct: 8 VECPTCHKKFL----SKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 205 FK-YQCHICLKCTSRKNYLKRH 225
+ + C +C + R+ L+ H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLH 85
Score = 43.6 bits (104), Expect = 8e-06
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRH--IIMMHT 231
+C C KK+ K+H H G K ++C C KC RK L H M+
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Score = 32.9 bits (76), Expect = 0.037
Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 65/172 (37%)
Query: 43 YECDCCTEYFIDRIAYEEHVRLHEGG--IICRLCGEKFEKSLMRDHLVTHIPPEHRGKVS 100
EC C + F+ + + H R H G C CG+ + + ++L+ H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRK---ENLLEH---------- 54
Query: 101 DAFFNKKQTALLTHYLKRNGIKLQCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDK 160
+ + R ++V + C C +
Sbjct: 55 -------EARNCMN--------------------------------RSEQV-FTCSVCQE 74
Query: 161 RFSLLQNLKRHLAIHERI-----AYQCNVCDKKYSRLSDYKIHMN-MHNGFK 206
F + L +H Y+C+ C +++ + D + HM +H+G
Sbjct: 75 TFR----RRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 63.3 bits (155), Expect = 4e-13
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 153 YACDR--CDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK-Y 207
YAC CD+RFS +L RH+ IH ++ +QC +C + +SR H+ H G K +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 208 QCHICLKCTSRKNYLKRHIIMMHT 231
C IC + +R + KRH +H
Sbjct: 64 ACDICGRKFARSDERKRH-TKIHL 86
Score = 51.3 bits (124), Expect = 8e-09
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVC 185
C F ++ RH + H G K + C C + FS +L H+ H E+ + C++C
Sbjct: 12 CDRRFSQSGSLTRHIRI-HTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDIC 68
Query: 186 DKKYSRLSDYKIHMNMHNGFK 206
+K++R + K H +H K
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 35.9 bits (84), Expect = 0.002
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
QC +C F ++ H + H G+K +ACD C ++F+ KRH IH
Sbjct: 36 QCRICMRNFSRSDHLTTH-IRTHTGEKP-FACDICGRKFARSDERKRHTKIH 85
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 61.4 bits (150), Expect = 4e-12
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVFYACDR--CDKRFSLLQNLKRHLAIH--ERIAYQCN 183
C + S++ H KH G+K Y CD C++RFS LKRH H + +QC
Sbjct: 14 CNKRYFKLSHLQMH-SRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQRRHTGVK-PFQCK 70
Query: 184 VCDKKYSRLSDYKIHMNMHNGFK-YQCHI--CLKCTSRKNYLKRH 225
C +K+SR K H H G K + C C K +R + L RH
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 57.9 bits (141), Expect = 6e-11
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 153 YACD--RCDKRFSLLQNLKRHLAIH--ERIAYQCNV--CDKKYSRLSDYKIHMNMHNGFK 206
+ C C+KR+ L +L+ H H E+ YQC+ C++++SR K H H G K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEK-PYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 207 -YQCHICLKCTSRKNYLKRHIIMMHT 231
+QC C + SR ++LK H HT
Sbjct: 66 PFQCKTCQRKFSRSDHLKTH-TRTHT 90
Score = 48.3 bits (116), Expect = 2e-07
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 124 QCNL--CADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIA 179
QC+ C F + RH +H G K + C C ++FS +LK H H E+
Sbjct: 38 QCDFKDCERRFSRSDQLKRH-QRRHTGVKP-FQCKTCQRKFSRSDHLKTHTRTHTGEK-P 94
Query: 180 YQCNV--CDKKYSRLSDYKIHMNMH 202
+ C C KK++R + H NMH
Sbjct: 95 FSCRWPSCQKKFARSDELVRHHNMH 119
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 57.5 bits (140), Expect = 3e-11
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 167 NLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK---YQCHICLKCTSRKNY 221
+ H E+ Y+C +C ++++ K+H+ + + C C +RK+
Sbjct: 2 SSGSSGRTHSGEK-PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 222 LKRHIIMMHT 231
L H+ H+
Sbjct: 61 LGVHLRKQHS 70
Score = 54.5 bits (132), Expect = 4e-10
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH--ERIA-YQCNVCDKKYSRLSDYKIHM-NMHNGFK 206
Y C C RF+ +K H+ E +A + C CD +R SD +H+ H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 37.9 bits (89), Expect = 3e-04
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHL 172
+C +C F M H L KH + + C CD + +L HL
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 57.1 bits (139), Expect = 7e-11
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHN 203
G AC+ C K F + +L RH H E+ Y C VC ++ R H+ H+
Sbjct: 2 SSGSS-GVACEICGKIFRDVYHLNRHKLSHSGEK-PYSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 204 G--FK-YQCHICLKCTSRKNYLKRHIIMMHT 231
G K Y C C K SR ++L HI +H+
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 43.6 bits (104), Expect = 4e-06
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIA-Y 180
C +C F ++ RH L H G+K Y+C C RF + H+ H Y
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 181 QCNVCDKKYSRLSDYKIHM 199
C C K +SR H+
Sbjct: 67 ICQSCGKGFSRPDHLNGHI 85
Score = 27.1 bits (61), Expect = 2.9
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKV-FYACDRCDKRFSLLQNLKRHL-AIH 175
C +C F + M H H G Y C C K FS +L H+ +H
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 57.0 bits (139), Expect = 8e-11
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ C+ C K FS LK H+ H + Y+C CD + S H+ +H+ + ++C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVK-PYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 210 HICLKCTSRKNYLKRH 225
IC + + L H
Sbjct: 68 QICPYASRNSSQLTVH 83
Score = 53.6 bits (130), Expect = 1e-09
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQ 181
+C +C F + + H H G K Y C CD + +L +HL IH ER ++
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDER-PFK 66
Query: 182 CNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
C +C S +H+ H G
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 42.4 bits (101), Expect = 1e-05
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
++C VC K +SR K HM H G K Y+C C + + L +H+ +H+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHS 60
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 58.0 bits (141), Expect = 1e-10
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 124 QCNLCADTFCPRSNMLRHYLLK--HRGDKVFY----ACDRCDKRFSLLQNLKRHLAIH-- 175
+ + C+ F + ++ H + H K F C R + F L H+ H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 176 ERIAYQCNV--CDKKYSRLSDYKIHMNMHNGFK-YQCH--ICLKCTSRKNYLKRHIIMMH 230
E+ ++C C K YSRL + K H+ H G K Y C C K S + +H H
Sbjct: 65 EK-PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 231 T 231
+
Sbjct: 124 S 124
Score = 49.5 bits (119), Expect = 1e-07
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHERI-----AYQCNVCD-----KKYSRLSDYKIHMNMH 202
D C + F + L H+ E I + C+ + + +HM H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHIN-SEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 203 NGFK-YQCHI--CLKCTSRKNYLKRHI 226
G K ++C C K SR LK H+
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 40.3 bits (95), Expect = 2e-04
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 153 YAC--DRCDKRFSLLQNLKRHLAIHERI-----AYQCNV--CDKKYSRLSDYKIHMNMHN 203
Y C + C K FS + +H R Y C + C K+Y+ S + H+ +
Sbjct: 98 YMCEHEGCSKAFSNASDRAKH---QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Query: 204 G 204
G
Sbjct: 155 G 155
Score = 33.0 bits (76), Expect = 0.059
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVFYACDR--CDKRFSLLQNLKRHLAIH 175
C+ F S+ +H H +K Y C C KR++ +L++H+
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEK-PYVCKLPGCTKRYTDPSSLRKHVKTV 153
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 55.6 bits (135), Expect = 2e-10
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 145 KHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNV--CDKKYSRLSDYKIHMN 200
K C K ++ +LK HL H E+ Y C+ C K++R + H
Sbjct: 1 KRTATHT-CDYAGCGKTYTKSSHLKAHLRTHTGEK-PYHCDWDGCGWKFARSDELTRHYR 58
Query: 201 MHNGFK-YQCHICLKCTSRKNYLKRH 225
H G + +QC C + SR ++L H
Sbjct: 59 KHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 45.2 bits (108), Expect = 1e-06
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 117 KRNGIKL-QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDR--CDKRFSLLQNLKRHLA 173
KR C T+ S+ L+ +L H G+K Y CD C +F+ L RH
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSH-LKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYR 58
Query: 174 IH--ERIAYQCNVCDKKYSRLSDYKIHMNMH 202
H R +QC CD+ +SR +HM H
Sbjct: 59 KHTGHR-PFQCQKCDRAFSRSDHLALHMKRH 88
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 58.2 bits (142), Expect = 2e-10
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQ 181
C C +F ++ H H G+K Y C C K FS ++L RH H E+ Y+
Sbjct: 23 ACPECGKSFSRSDHLAEHQRT-HTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEK-PYK 79
Query: 182 CNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
C C K +S+ ++ + H H G K Y C C K S+ +L+ H
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 57.5 bits (140), Expect = 3e-10
Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI----- 178
+C C +F R+N+ H H G+K YAC C K FS HL H+R
Sbjct: 79 KCPECGKSFSQRANLRAHQRT-HTGEKP-YACPECGKSFSQ----LAHLRAHQRTHTGEK 132
Query: 179 AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
Y+C C K +SR + H H G K Y+C C K SR++ L H
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 57.1 bits (139), Expect = 5e-10
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI----- 178
+C C +F + ++ RH H G+K Y C C K FS + +L H+R
Sbjct: 51 KCPECGKSFSDKKDLTRHQRT-HTGEKP-YKCPECGKSFSQ----RANLRAHQRTHTGEK 104
Query: 179 AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
Y C C K +S+L+ + H H G K Y+C C K SR++ L H
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 54.0 bits (131), Expect = 5e-09
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 131 TFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCNVC 185
+ S+ + L G+K YAC C K FS HLA H+R Y+C C
Sbjct: 2 SEFGSSSSVAQAAL-EPGEKP-YACPECGKSFS----RSDHLAEHQRTHTGEKPYKCPEC 55
Query: 186 DKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
K +S D H H G K Y+C C K S++ L+ H
Sbjct: 56 GKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 44.4 bits (106), Expect = 9e-06
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI----- 178
C C +F +++ H H G+K Y C C K FS + +L H+R
Sbjct: 107 ACPECGKSFSQLAHLRAHQRT-HTGEKP-YKCPECGKSFS----REDNLHTHQRTHTGEK 160
Query: 179 AYQCNVCDKKYSRLSDYKIHMNMHNGFK 206
Y+C C K +SR +H H G K
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 30.1 bits (69), Expect = 0.63
Identities = 37/140 (26%), Positives = 45/140 (32%), Gaps = 40/140 (28%)
Query: 43 YECDCCTEYFIDRIAYEEHVRLHEG--GIICRLCGEKFEKSLMRDHLVTHIPPEHRGKVS 100
Y+C C + F R H R H G C CG+ F + HL H R
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL---AHLRAH----QR---- 126
Query: 101 DAFFNKKQTALLTH-----YLKRNGIKLQCNLCADTFCPRSNMLRHYLLKHRGDKVFYAC 155
TH Y +C C +F N+ H H G+K Y C
Sbjct: 127 ------------THTGEKPY--------KCPECGKSFSREDNLHTHQRT-HTGEKP-YKC 164
Query: 156 DRCDKRFSLLQNLKRHLAIH 175
C K FS L H H
Sbjct: 165 PECGKSFSRRDALNVHQRTH 184
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 56.5 bits (137), Expect = 5e-10
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 29/158 (18%)
Query: 61 HVRLHEG--GIICRLCGEKFEKSLMRDHLVTHIPPEHRGKVSDAFFNKKQTALLTHYLKR 118
+ E + C F LVTH+ EH G
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTM---HELVTHVTMEHVGGPEQNNHVCYWE--------- 63
Query: 119 NGIKLQCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDR--CDKRFSLLQNLKRHLAIH- 175
+C +F + ++ H + H G+K + C C K F+ +NLK H H
Sbjct: 64 -----ECPREGKSFKAKYKLVNH-IRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHT 116
Query: 176 -ERIAYQCNV--CDKKYSRLSDYKIHMNMHNGFK-YQC 209
E+ ++C CD++++ SD K HM++H K
Sbjct: 117 GEK-PFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 52.3 bits (126), Expect = 1e-08
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 16/117 (13%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH----------ER 177
+ P L + CD+ FS + L H+ +
Sbjct: 3 SGSSGQPIKQELSCKWI-DEAQLS-RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 178 IAYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHI--CLKCTSRKNYLKRHIIMMHT 231
+C K + H+ +H G K + C C K +R LK H HT
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHT 116
Score = 41.9 bits (99), Expect = 6e-05
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 157 RCDKRFSLLQNLKRHLAIHER-IAYQCNVCDKKYSRLSDYKIHMNMHNG----------F 205
++ I E ++ CD+ +S + + H+ M + +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 206 KYQCHICLKCTSRKNYLKRHIIMMHT 231
+C K K L H I +HT
Sbjct: 62 WEECPREGKSFKAKYKLVNH-IRVHT 86
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 54.9 bits (133), Expect = 5e-10
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 153 YACDR--CDKRFSLLQNLKRHLAIH--ERIAYQCNV--CDKKYSRLSDYKIHMNMHNGFK 206
+ CD C K ++ +LK HL H E+ Y+C CD +++R + H H G K
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEK-PYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 207 -YQCHICLKCTSRKNYLKRHI 226
+QC +C + SR ++L H+
Sbjct: 75 PFQCGVCNRSFSRSDHLALHM 95
Score = 47.6 bits (114), Expect = 2e-07
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 135 RSNMLRHYLLKHRGDKVFYAC--DRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYS 190
+S+ L+ +L H G+K Y C + CD RF+ L RH H + +QC VC++ +S
Sbjct: 29 KSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRKHTGAK-PFQCGVCNRSFS 86
Query: 191 RLSDYKIHMNMH 202
R +HM H
Sbjct: 87 RSDHLALHMKRH 98
Score = 38.4 bits (90), Expect = 3e-04
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 169 KRHLAIHERIAYQCNV--CDKKYSRLSDYKIHMNMHNGFK-YQCHI--CLKCTSRKNYLK 223
RI + C+ C K Y++ S K H+ H G K Y+C C +R + L
Sbjct: 6 SGPDLEKRRI-HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 224 RHIIMMHT 231
RH HT
Sbjct: 65 RH-YRKHT 71
Score = 34.9 bits (81), Expect = 0.006
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHE 176
C F + RHY KH G K + C C++ FS +L H+ H+
Sbjct: 53 CDWRFARSDELTRHYR-KHTGAKP-FQCGVCNRSFSRSDHLALHMKRHQ 99
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 52.3 bits (126), Expect = 2e-09
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 161 RFSLLQNLKRHLAIHERIAYQCNV--CDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTS 217
+ NL ++ R Y C V CD+++SR + H+ +H G K +QC IC++ S
Sbjct: 2 EPHPMNNLLNYVVPKMR-PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 218 RKNYLKRHI 226
R ++L HI
Sbjct: 61 RSDHLTTHI 69
Score = 46.5 bits (111), Expect = 2e-07
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 153 YACDR--CDKRFSLLQNLKRHLAIHERIA-YQCNVCDKKYSRLSDYKIHMNMH 202
YAC CD+RFS L RH+ IH +QC +C + +SR H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.7 bits (83), Expect = 0.002
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 135 RSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
RS+ L ++ H G K + C C + FS +L H+ H
Sbjct: 33 RSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTH 72
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERIA---YQCNVCDKKYSRLSDYKIHMNMH 202
G+ Y C C + ++ + N RH + Y C C K+++R + H+ +
Sbjct: 5 KEGEHT-YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 203 NG 204
+
Sbjct: 64 HK 65
Score = 49.1 bits (118), Expect = 2e-08
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 124 QCNLCADTFCPRSNMLRHYL-LKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
+C +C+ + SN RHY+ R KV Y C C K F+ N+ H+ I +I
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 47.9 bits (115), Expect = 6e-08
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 180 YQCNVCDKKYSRLSDYKIHM--NMHNGFK-YQCHICLKCTSRKNYLKRHI 226
Y+C VC + Y+ +S++ H + K Y C C K +RK+ + H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 26.0 bits (58), Expect = 4.0
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 202 HNGFK-YQCHICLKCTSRKNYLKRHI-IMMHT 231
G Y+C +C + + + RH
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR 36
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 52.4 bits (126), Expect = 3e-09
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHERIA----YQCNVCDKKYSRLSDYKIHMNMH 202
C+ C +L H H + C C K++ + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 49.3 bits (118), Expect = 3e-08
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK----YQCHICLKCTSRKNYLKRHIIMMHTK 232
QC +C + + H H + C C K + + + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Score = 42.0 bits (99), Expect = 9e-06
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 123 LQCNLCADTFCPRSNMLRHYLLKH---RGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
LQC +C T ++++ H KH F C+ C KRF ++ H +
Sbjct: 8 LQCEICGFTCRQKASLNWH-QRKHAETVAALRF-PCEFCGKRFEKPDSVAAHRSKS 61
Score = 28.1 bits (63), Expect = 0.94
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 43 YECDCCTEYFIDRIAYEEHVRLHEGGI-----ICRLCGEKFE-KSLMRDHLVTH 90
+C+ C + + H R H + C CG++FE + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 26.2 bits (58), Expect = 4.2
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 14 PQKCPLCERLYKSVYRMKEHMKKQHKGQL----YECDCCTEYFIDRIAYEEHVRLH 65
+C +C + + H +K H + + C+ C + F + H
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 52.2 bits (126), Expect = 3e-09
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 153 YACDR--CDKRFSLLQNLKRHLAIH--ERIAYQCNV--CDKKYSRLSDYKIHMNMHNGFK 206
Y C C K F LK H H + Y+C CDK++S S K H +H G+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 207 -YQCHICLKCTSRKNYLKRHIIMMH 230
+ C +H+ H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 40.3 bits (95), Expect = 4e-05
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVFYACD--RCDKRFSLLQNLKRHLAIHE-RIAYQCNV 184
C F + + H H Y C CDKRFSL LKRH +H + +
Sbjct: 9 CGKAFKKHNQLKVH-QFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 185 CDKKYSRLSDYKIHM 199
C + Y H+
Sbjct: 67 CSFVGKTWTLYLKHV 81
Score = 29.1 bits (66), Expect = 0.42
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVF--YACDRCDKRFSLLQNLKRH 171
C F S + RH H G +C K ++L
Sbjct: 39 CDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 52.5 bits (127), Expect = 6e-09
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 125 CNLCADTFCPRSNMLRHYLLKHR--GDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAY 180
C F S M +H G +V + C C K F LKRH +H E+ +
Sbjct: 10 HKGCTKMFRDNSAMRKH----LHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTGEK-PF 63
Query: 181 QCNV--CDKKYSRLSDYKIHMNMHNGFK-YQCHI--CLKCTSRKNYLKRHIIMMHTK 232
QC C K++S + + H+ +H G + Y C C K ++ LK H I+ H K
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH-ILTHAK 119
Score = 44.8 bits (107), Expect = 3e-06
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDR--CDKRFSLLQNLKRHLAIH--ERIA 179
C C F S + RH L+ H G+K + C C KRFSL NL+ H+ IH +R
Sbjct: 36 VCAECGKAFVESSKLKRHQLV-HTGEKP-FQCTFEGCGKRFSLDFNLRTHVRIHTGDR-P 92
Query: 180 YQCNV--CDKKYSRLSDYKIHMNMHNGFK 206
Y C C+KK+++ ++ K H+ H K
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 51.3 bits (124), Expect = 6e-09
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ C C K F L HL IH R Y C C K++ + SD K H +H G K ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR-PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 210 HICLKCTSRKNYLKRHIIMMHT 231
+C K S+ + L H HT
Sbjct: 61 QVCGKAFSQSSNLITHSR-KHT 81
Score = 46.6 bits (112), Expect = 3e-07
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQ 181
C +C +F S + H L+ H + Y C C KRF ++K+H IH E+ ++
Sbjct: 3 DCKICGKSFKRSSTLSTHLLI-HSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEK-PHK 59
Query: 182 CNVCDKKYSRLSDYKIHMNMHNG 204
C VC K +S+ S+ H H G
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 36.6 bits (86), Expect = 8e-04
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 179 AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
++ C +C K + R S H+ +H+ + Y C C K +K+ +K+H +HT
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHT 53
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 50.6 bits (122), Expect = 9e-09
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 145 KHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMH 202
C C S L+ H IH +R ++CN C + S+ HM
Sbjct: 3 SGSSGHP-EKCSECSYSCSSKAALRIHERIHCTDR-PFKCNYCSFDTKQPSNLSKHMKKF 60
Query: 203 NGFK 206
+G
Sbjct: 61 HGDM 64
Score = 43.6 bits (104), Expect = 2e-06
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
+C+ C S + +IH +H + ++C+ C T + + L +H +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKFH 61
Score = 41.3 bits (98), Expect = 2e-05
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 125 CNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
C+ C+ + ++ + H H D+ + C+ C NL +H+
Sbjct: 12 CSECSYSCSSKAALRIH-ERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKF 60
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 51.3 bits (124), Expect = 1e-08
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHN 203
GDK+ Y C C K F+ RH+++H R Y C VC KK+ HM +H
Sbjct: 5 SSGDKL-YPCQ-CGKSFTHKSQRDRHMSMHLGLR-PYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 204 GFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
G K Y+C+IC K ++ RH+ +
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRHV---TS 87
Score = 35.9 bits (84), Expect = 0.003
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQ 181
C +C F + +++ H + H G K Y C+ C KRF + RH + + +Y+
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKI-HTGIKP-YECNICAKRFMWRDSFHRH--VTSCTK-SYE 93
Query: 182 CNVCDKKYSRLS 193
++ + S
Sbjct: 94 AAKAEQNTTEAS 105
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 50.9 bits (123), Expect = 1e-08
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCNVCDKKYSRLSDYKIHMN 200
+ K + C C + F+ +L IHER Y C++C K + R + H
Sbjct: 12 SKTKK-EFICKFCGRHFTK----SYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Query: 201 MHNGFK-YQCHICLKCTSRKNYLKRH 225
+H+ K ++C C K + L H
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 48.6 bits (117), Expect = 1e-07
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQ 181
C C F N+L H H ++ Y CD C K F +L+ H IH E+ ++
Sbjct: 19 ICKFCGRHFTKSYNLLIHERT-HTDER-PYTCDICHKAFRRQDHLRDHRYIHSKEK-PFK 75
Query: 182 CNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
C C K + + +H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 51.1 bits (123), Expect = 5e-08
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 12/118 (10%)
Query: 124 QCN--LCADTFCPRSNMLRHYLLKHRGDKVF-YACDR--CDKRFSLLQNLKRHLAIH--E 176
C+ C F ++NM +H+ K+ Y C C K F LK H H +
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 177 RIAYQCN--VCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
Y+C CDK++S S K H +H G+ + C +H+ H
Sbjct: 133 L-PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 50.3 bits (121), Expect = 9e-08
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 124 QCNL--CADTFCPRSNMLRHYLLKHRGDKVFYACD--RCDKRFSLLQNLKRHLAIH--ER 177
C+ C + + H L KH G+K + C C+K F+ L +L RH H E+
Sbjct: 14 ICSFADCGAAYNKNWKLQAH-LCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 178 IAYQCN--VCDKKYSRLSDYKIHMNMHNGFK---YQCHI--CLKCTSRKNYLKRH 225
+ C+ CD +++ ++ K H N + K Y CH C K + N LK H
Sbjct: 72 -NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 47.1 bits (113), Expect = 1e-07
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHTKFEGQIG 238
+ C VC + ++R K H H K Y C +C + +R++ L RH +H+ G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS------G 56
Query: 239 EMED 242
+ +
Sbjct: 57 NLGE 60
Score = 29.0 bits (66), Expect = 0.29
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
C +C F + ++ RHY H +K Y C C++ F+ L RH ++I
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTNEKP-YPCGLCNRAFTRRDLLIRH---AQKI 53
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 47.9 bits (115), Expect = 1e-07
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIA---YQCNVCDKKYSRLSDYKIHMN 200
H G+K YAC CDK F Q L H + + C+ C K ++R + H +
Sbjct: 10 HTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 201 MHNGFK-YQCHICLK 214
G +
Sbjct: 69 NCAGPDGVEGENSGP 83
Score = 43.7 bits (104), Expect = 3e-06
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 171 HLAIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-----YQCHICLKCTSRKN 220
R Y C+ CDK + + +H ++ + C C K +R+N
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 221 YLKRH 225
+ RH
Sbjct: 62 TMARH 66
Score = 36.7 bits (86), Expect = 8e-04
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVF---YACDRCDKRFSLLQNLKRHLAIH--ERI 178
C+ C TF + + H+ + + C +C K F+ + RH
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKR-YHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD- 74
Query: 179 AYQCNVCDK 187
+
Sbjct: 75 GVEGENSGP 83
Score = 25.9 bits (58), Expect = 5.5
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRF 162
C+ C TF R+ M RH G +
Sbjct: 49 VCSKCGKTFTRRNTMARHADN-CAGPDG-VEGENSGPSS 85
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.4 bits (114), Expect = 1e-07
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 145 KHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERIAYQCNVCDKKYSRLSDYKIHMNMHNG 204
+K Y C C+ + S L H + A C C ++ + H +
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEHESKCEY 67
Query: 205 FKYQCHICLKCTSRKNYLKRHIIMMHTK 232
K C C++ + RH + +H +
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 36.8 bits (84), Expect = 0.002
Identities = 20/116 (17%), Positives = 31/116 (26%), Gaps = 27/116 (23%)
Query: 31 KEHMKKQHKGQLYECDCCTEYFIDRIAYEEHVRLHEGGIICRLCGEKFEKSLMRDHLVTH 90
++Y+C C + H RL +C C +F ++
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQE---- 60
Query: 91 IPPEHRGKVSDAFFNKKQTALLTHYLKRNGIKLQCNLCADTFCPRSNMLRHYLLKH 146
H K KL C C TF ++ RH + H
Sbjct: 61 -----------------------HESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 33.0 bits (74), Expect = 0.035
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 167 NLKRHLAIHERIAYQCNVCDKKYSRLSDYKIHMNMHNGFKYQCHICLKCTSRKNYLKRH 225
+ + YQC +C+ K S L + H + C C + H
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEH 61
Score = 27.6 bits (60), Expect = 2.3
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 16 KCPLCERLYKSVYRMKEHMKKQHKGQLYECDCCTEYFIDRIAYEEHVRLHEGGII-CRLC 74
+C LC S+ H + C C+ F +EH E + C C
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLEC 75
Query: 75 GEKFE-KSLMRDHLVT 89
F+ + H V
Sbjct: 76 MRTFKSSFSIWRHQVE 91
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 47.1 bits (113), Expect = 1e-07
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 168 LKRHLAIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNY 221
+ H H + Y+C+ C + + H +H G K Y+C+IC +R
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 222 LKRH 225
LK H
Sbjct: 61 LKTH 64
Score = 45.1 bits (108), Expect = 6e-07
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHN 203
DK Y CDRC F NL H +H E+ Y+CN+C +++R ++ K H +H+
Sbjct: 12 THSDKP-YKCDRCQASFRYKGNLASHKTVHTGEK-PYRCNICGAQFNRPANLKTHTRIHS 69
Query: 204 GFK 206
G K
Sbjct: 70 GEK 72
Score = 34.0 bits (79), Expect = 0.006
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 125 CNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
C+ C +F + N+ H + H G+K Y C+ C +F+ NLK H IH
Sbjct: 20 CDRCQASFRYKGNLASHKTV-HTGEK-PYRCNICGAQFNRPANLKTHTRIH 68
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 43.7 bits (104), Expect = 3e-06
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 146 HRGDKVFYACDR--CDKRFSLLQNLKRHLAI---HERIAYQCN--VCDKKYSRLSDYKIH 198
G CD C + FS Q L H H++ ++ C C K ++ K H
Sbjct: 2 SSGSSG-MPCDFPGCGRIFSNRQYLNHHKKYQHIHQK-SFSCPEPACGKSFNFKKHLKEH 59
Query: 199 MNMHNGFK-YQCHICLKC 215
M +H+ + Y C
Sbjct: 60 MKLHSDTRDYICEFSGPS 77
Score = 39.5 bits (93), Expect = 9e-05
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVFYACD--RCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
C F R + H +H K ++C C K F+ ++LK H+ +H R Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKLHSDTR-DYICE 72
Query: 184 VCDK 187
Sbjct: 73 FSGP 76
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 40.5 bits (96), Expect = 3e-05
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 171 HLAIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKR 224
E Y+C+ C K +S SD H H G K Y+C C K ++++L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 225 H 225
H
Sbjct: 65 H 65
Score = 37.8 bits (89), Expect = 3e-04
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 136 SNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLS 193
+ R R + Y CD C K FS +L +H H E+ Y+C+ C K + + S
Sbjct: 4 GSSGRSEWQ-QRERRR-YKCDECGKSFSHSSDLSKHRRTHTGEK-PYKCDECGKAFIQRS 60
Query: 194 DYKIHMNMHNGFK 206
H +H G
Sbjct: 61 HLIGHHRVHTGSG 73
Score = 30.5 bits (70), Expect = 0.14
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
+C+ C +F S++ +H H G+K Y CD C K F + HL H R+
Sbjct: 20 KCDECGKSFSHSSDLSKHRRT-HTGEKP-YKCDECGKAFI----QRSHLIGHHRV 68
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 40.1 bits (95), Expect = 4e-05
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 172 LAIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ I Y C C K +SR S H +H G K Y+C C K S+ + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 39.4 bits (93), Expect = 8e-05
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHN 203
H G+K Y C C K FS L +H +H E+ Y+C C K +S+ S H +H
Sbjct: 9 HSGEKP-YGCVECGKAFSRSSILVQHQRVHTGEK-PYKCLECGKAFSQNSGLINHQRIHT 66
Query: 204 GFK 206
Sbjct: 67 SGP 69
Score = 32.8 bits (76), Expect = 0.017
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
C C F S +++H + H G+K Y C C K FS L H IH
Sbjct: 16 GCVECGKAFSRSSILVQHQRV-HTGEKP-YKCLECGKAFSQNSGLINHQRIH 65
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 41.3 bits (96), Expect = 4e-05
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 166 QNLKRHLAIHE-RIAYQCNVCDKKYSRLSDYKIHMNMHNGFKYQCHICLKCTSRKNYLKR 224
+ K + +I ++C C Y L + +HMN ++ H ++ R
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 225 HIIMM 229
++
Sbjct: 65 KRSLL 69
Score = 39.7 bits (92), Expect = 1e-04
Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 8/89 (8%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERIAYQCNVCDKKYSRLSDYKIHMNMHNGF 205
G F C C + L L H+ + D + ++
Sbjct: 14 FTGASKF-RCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME 72
Query: 206 K-------YQCHICLKCTSRKNYLKRHII 227
+C C L H+I
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 26.7 bits (58), Expect = 5.3
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 14 PQKCPLCERLYKSVYRMKEHMKKQHKGQLYECDCCTEYFIDRIAYEEHVRLHEGGII--- 70
+C C Y ++ + HM + + + R + L E
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYR-DDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 71 -----CRLCGEKFE-KSLMRDHLVTH 90
C CG FE + H++
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKT 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 5e-05
Identities = 47/338 (13%), Positives = 91/338 (26%), Gaps = 90/338 (26%)
Query: 19 LCERLYKSVYRMKEHMKKQHKGQLYEC--DCCTEYFIDRIAYEEHV-RLHEGGIICRLCG 75
L + + V + E + + + L + + Y E RL+
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN------- 123
Query: 76 EKFEKSLMRDHLVTHIPPEHRGKVSDAFFNKKQTALLTHYLKRN-GIKL--------QCN 126
+ F K + V+ + P + K + ALL L+ + +
Sbjct: 124 QVFAK-----YNVSRLQP----------YLKLRQALLE--LRPAKNVLIDGVLGSGKTW- 165
Query: 127 LCADTFCPRSNMLRHY-LLKHRGDKVFYA----CDRCDKRFSLLQNLKRHLA-------- 173
+ D Y + K+F+ C+ + +LQ L +
Sbjct: 166 VALDV-------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 174 IHERIAYQCNVCDKKYSRLSDYKIHMNM------------HNGFKYQCHICLKCTSRKNY 221
I + + + RL K + N N F C I L T+R
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--TTRFKQ 276
Query: 222 LKRHIIMMHTKFEGQIGEMEDKVGEKKIGEIEAKVGEGNQGKEGGNQTEVG-ETSMLSNL 280
+ + T + + ++ + K + L
Sbjct: 277 VTDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKY--------------LDCRPQDLPRE 321
Query: 281 SKHTHPLVCPSSNGREETQYFPFRSWVNTRTLESNPLK 318
T+P S E + W N + + + L
Sbjct: 322 VLTTNPRRL-SIIA-ESIRDGLAT-WDNWKHVNCDKLT 356
Score = 36.0 bits (82), Expect = 0.017
Identities = 32/229 (13%), Positives = 60/229 (26%), Gaps = 70/229 (30%)
Query: 50 EYFIDRIAYEEHVRLHEGGIICRL-------CGEKFEKSLMRDHLVTHIPPEHRGKVSDA 102
+ F + + ++ + L + LV P E +
Sbjct: 373 KMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 103 FFNKKQTA---------LLTHYLKRNGIKLQCNLCADTFCPRSNMLRHYLLKHRGDKVFY 153
+ K ++ HY + +D P L Y H G +
Sbjct: 432 YLELKVKLENEYALHRSIVDHY------NIPKTFDSDDLIP--PYLDQYFYSHIG----H 479
Query: 154 ---ACDRCDKRFSLLQN-------LKRHLAIHERIAYQCNVCDKKYSRLSDYKIHMNMHN 203
+ +R +L + L++ + H+ A N + L K
Sbjct: 480 HLKNIEH-PERMTLFRMVFLDFRFLEQKI-RHDSTA--WNASGSILNTLQQLK------- 528
Query: 204 GFKYQCHICLKCTSRKNYLKRHIIMMHTKFEGQIGEMED---KVGEKKI 249
Y K +I K+E + + D K+ E I
Sbjct: 529 --FY---------------KPYICDNDPKYERLVNAILDFLPKIEENLI 560
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.9 bits (92), Expect = 2e-04
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 132 FCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERIAYQCNVCDKKYSR 191
S+ L L + + C C FS +LK+H+ E C VC K+++
Sbjct: 56 LLDESSYLYRLLASKAISQ--FVCPLCLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTS 112
Query: 192 LSDYKIHM-NMHNG 204
H+ HN
Sbjct: 113 TDSALDHVCKKHNI 126
Score = 36.8 bits (84), Expect = 0.002
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 33 HMKKQHKGQLYECDCCTEYFIDRIAYEEHVRLHEGGIICRLCGEKFEKSLMRDHLVTHIP 92
+ + C C F ++ ++H+R E +C +C ++F + D + H+
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTST---DSALDHVC 121
Query: 93 PEHRGKVS 100
+H VS
Sbjct: 122 KKHNICVS 129
Score = 35.7 bits (81), Expect = 0.005
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 168 LKRHLAIHERIAYQCNVCDKKYSRLSDYKIHMNMHNGFKYQCHICLKCTSRKNYLKRHII 227
L R LA + C +C +S K H+ C +C K + + H+
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTSTDSALDHVC 121
Query: 228 MMHT 231
H
Sbjct: 122 KKHN 125
Score = 27.6 bits (60), Expect = 2.7
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 139 LRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIHERIAYQCNVCDKKYSRLSDYKIH 198
+ YL H+G + + + L KR + + + S L
Sbjct: 10 SKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLY---RL 66
Query: 199 MNMHNGFKYQCHICLKCTSRKNYLKRHI 226
+ ++ C +CL S LK+HI
Sbjct: 67 LASKAISQFVCPLCLMPFSSSVSLKQHI 94
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 37.8 bits (87), Expect = 2e-04
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHE-RIAYQCNVCDKKYSRLSDYKIHMNMHNGFK 206
Y C+ C R LK+H+ H Y C C+ + + HM K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.5 bits (76), Expect = 0.006
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHICLKCTSRKNYLKRHI 226
Y C C + + S K H+ H + Y C C K L +H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 28.1 bits (62), Expect = 0.54
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 135 RSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
+ +ML+ ++ H + Y C C+ F NL +H+
Sbjct: 13 KPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSK 52
Score = 25.8 bits (56), Expect = 3.4
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 16 KCPLCERLYKSVYRMKEHMKKQHKGQLYECDCCTEYFIDRIAYEEHVRLHEG 67
C C K +K+H++ + Y C C F + +H++
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 35.9 bits (84), Expect = 7e-04
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH 175
Y C+ C RF LQ LK HL IH
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.5 bits (75), Expect = 0.012
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK 206
Y C +C ++ L K H+ +H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 26.3 bits (59), Expect = 1.5
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
G K Y C IC LK H + +HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH-LRIHT 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 34.1 bits (79), Expect = 0.004
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHL-AIH--ERIAYQCNVCDKKYS 190
K Y C C K FS +L H+ +H ER ++C V S
Sbjct: 7 GSVGK-PYICQSCGKGFSRPDHLNGHIKQVHTSER-PHKCQVWVSGPS 52
Score = 31.4 bits (72), Expect = 0.039
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 180 YQCNVCDKKYSRLSDYKIHM-NMHNGFK-YQCHICLKC 215
Y C C K +SR H+ +H + ++C + +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
Score = 27.9 bits (63), Expect = 0.61
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
+ + K Y C C K SR ++L HI +HT
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 26.8 bits (60), Expect = 1.5
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 125 CNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFS 163
C C F ++ H H ++ + C S
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGPS 52
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 33.9 bits (78), Expect = 0.006
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 145 KHRGDKVFYACDR--CDKRFSLLQNLKRHLAIH--ERIAYQCNV--CDKKYSRLSDYKIH 198
+ + C C K + +LK H H E+ + C+ C+++++R + H
Sbjct: 11 DSSRIRS-HICSHPGCGKTYFKSSHLKAHTRTHTGEK-PFSCSWKGCERRFARSDELSRH 68
Query: 199 MNMH 202
H
Sbjct: 69 RRTH 72
Score = 33.9 bits (78), Expect = 0.007
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 168 LKRHLAIHERI-AYQCNV--CDKKYSRLSDYKIHMNMHNGFK-YQCHI--CLKCTSRKNY 221
RI ++ C+ C K Y + S K H H G K + C C + +R +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 222 LKRH 225
L RH
Sbjct: 65 LSRH 68
Score = 29.7 bits (67), Expect = 0.20
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 128 CADTFCPRSNMLRHYLLKHRGDKVFYACD--RCDKRFSLLQNLKRHLAIH 175
C T+ S++ H H G+K F +C C++RF+ L RH H
Sbjct: 25 CGKTYFKSSHLKAH-TRTHTGEKPF-SCSWKGCERRFARSDELSRHRRTH 72
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K Y C+ C RF + +L+ H+ IH
Sbjct: 6 SGGEKP-YKCETCGARFVQVAHLRAHVLIH 34
Score = 29.8 bits (68), Expect = 0.092
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK 206
Y+C C ++ +++ + H+ +H G
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 25.9 bits (58), Expect = 2.3
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
G K Y+C C + +L+ H +++HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH-VLIHT 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+VC K++S+ S + H +H G K
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.19
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y CD C K FS Q+ HL H+R+ +
Sbjct: 7 GMGEKC-YKCDVCGKEFS--QS--SHLQTHQRVHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 2.9
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 197 IHMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G K Y+C +C K S+ ++L+ H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.9 bits (74), Expect = 0.031
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 171 HLAIHERIAYQCNVCDK-KYSRLSDYKIHMNMHNGFKYQCHICLKCTSRKNYLKRHIIMM 229
+L I ++ + C C + K HM + CH C K +K H++
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN 85
Query: 230 HT 231
H
Sbjct: 86 HN 87
Score = 32.1 bits (72), Expect = 0.047
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 149 DKVFYACDRCDK-RFSLLQNLKRHLAIHERIAYQCNVCDKKYSRLSDYKIH-MNMHN 203
DK +C C ++ LK+H+ ++ + C+ C K+ L+ K H M HN
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.048
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C CD +S+ S ++H N+H G K
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.36
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K + C CD FS +L+ H +H E+ +
Sbjct: 7 GMGEKT-WKCRECDMCFSQASSLRLHQNVHVGEK-PSGPS 44
Score = 25.2 bits (56), Expect = 4.4
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G K ++C C C S+ + L+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.060
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+VC K +S +H +H+G K
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K FS ++ L++H+RI +
Sbjct: 7 GTGEKP-YECSVCGKAFS----HRQSLSVHQRIHSGKKPSGPS 44
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.1 bits (72), Expect = 0.065
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 166 QNLKRHLAIHERIAYQCNVCDKKYSRLSDYKIHMNM-HNGFK----YQCHICLKCTSRKN 220
+ Y+C C + L+ + H++ H Y C C T R +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 221 YLKRHIIMMHT 231
L H + H
Sbjct: 65 ALSEHNLKYHP 75
Score = 29.0 bits (64), Expect = 0.77
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 140 RHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLA-----IHERIAYQCNVCDKKYSRLSD 194
H+ +++ + Y C C + L H+ + +Y C C+ R
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 195 YKIH 198
H
Sbjct: 66 LSEH 69
Score = 28.6 bits (63), Expect = 0.86
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 16 KCPLCERLYKSVYRMKEHMKKQHKGQ----LYECDCCTEYFIDRIAYEEHVRLHEGG 68
+C C + H+ +H Y C C A EH + G
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.065
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C++C K +++ S +H +H G K
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.56
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K F+ K L +H++I +
Sbjct: 7 GTGEKP-YECSICGKSFT----KKSQLHVHQQIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.7
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 197 IHMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G K Y+C IC K ++K+ L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.1 bits (77), Expect = 0.066
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH 175
Y C C +L H+A H
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.7 bits (76), Expect = 0.084
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 179 AYQCNVCDKKYSRLSDYKIHMNMH 202
YQC+VC D H+ H
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.8 bits (66), Expect = 1.6
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 35 KKQHKGQLYECDCCTEYFIDRIAYEEHVRLH 65
G Y+C C+ + + HV H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.1 bits (69), Expect = 0.067
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K ++ S+ +H H G
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 25.5 bits (57), Expect = 3.4
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 10/42 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQC 182
G+K Y C+ C K F+ K +L +H+R
Sbjct: 7 GTGEKP-YECNECQKAFN----TKSNLMVHQRTHTGESGPSS 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 30.2 bits (69), Expect = 0.082
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C C K + + H +H G K
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 27.9 bits (63), Expect = 0.53
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G K + C C K F K +L H+RI + +
Sbjct: 7 GTGQKP-FECTHCGKSFR----AKGNLVTHQRIHTGEKSGPSS 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.083
Identities = 29/182 (15%), Positives = 50/182 (27%), Gaps = 70/182 (38%)
Query: 37 QHKG---QLY-----------ECDCCTEYFIDRIAYE--EHVR-------LHEGGIICRL 73
Q +G LY D +F D + + V +H GG +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRAD---NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 74 CGEKFEKSLMRDHLV------THIPPEHRGKVSDAFFNK-----KQT-----ALLTH--- 114
E + +++ + +V I E + F T AL
Sbjct: 1684 IRENYS-AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 115 ---YLKRNGIK----------------LQCNLCADTFCPRSNMLRHYLLKHRGDKVFYAC 155
LK G+ L AD +++ ++ +RG + A
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALAS--LADVM-SIESLVE--VVFYRGMTMQVAV 1797
Query: 156 DR 157
R
Sbjct: 1798 PR 1799
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.084
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCH 210
Y+C C K Y+ + +H +H G +
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 27.1 bits (61), Expect = 0.86
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C++C K + N K +L +H+++ +
Sbjct: 7 GTGEKP-YKCEKCGKGY----NSKFNLDMHQKVHTGERPSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 30.3 bits (68), Expect = 0.084
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH--ERIAYQCNVC 185
AC+ C K F + +L RH H E+ Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEK-PYSSGPS 46
Score = 29.5 bits (66), Expect = 0.15
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 176 ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCHIC 212
R C +C K + + H H+G K Y
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 24.5 bits (53), Expect = 9.4
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 206 KYQCHICLKCTSRKNYLKRHIIMMHT 231
+ C IC K +L RH + H+
Sbjct: 12 QVACEICGKIFRDVYHLNRH-KLSHS 36
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.9 bits (68), Expect = 0.096
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHER 177
+ C C FS +L +HL HER
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHER 37
Score = 27.2 bits (61), Expect = 1.1
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK 206
+QC C +S H+ H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTD 39
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K + C C+K FS K +L +H++ +
Sbjct: 5 SSGEKP-FGCSCCEKAFS----SKSYLLVHQQTHAEEKPSGPS 42
Score = 29.0 bits (66), Expect = 0.22
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ C+ C+K +S S +H H K
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.6 bits (57), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 202 HNGFK-YQCHICLKCTSRKNYLKRH 225
+G K + C C K S K+YL H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (67), Expect = 0.12
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+ + C +CD+ F+ L +H H
Sbjct: 7 GAGENP-FKCSKCDRVFTQRNYLVQHERTH 35
Score = 26.7 bits (59), Expect = 1.4
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G ++C C + +++NYL +H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 26.4 bits (58), Expect = 1.6
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNG 204
++C+ CD+ +++ + H H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (67), Expect = 0.14
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G Y C +C+K FS K L +H+R+ +
Sbjct: 7 GAGVNP-YKCSQCEKSFS----GKLRLLVHQRMHTREKPSGPS 44
Score = 29.0 bits (66), Expect = 0.17
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C+K +S +H MH K
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 24.4 bits (54), Expect = 9.7
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G Y+C C K S K L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+VC K +S + H +H+G K
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 25.5 bits (57), Expect = 3.9
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y CD C K FS +L +H +H E+ +
Sbjct: 7 GTGEKP-YECDVCRKAFSHHASLTQHQRVHSGEK-PSGPS 44
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 31.1 bits (70), Expect = 0.15
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 10 DKVVPQKCPLCERLYKSVYRMKEHMKKQHK 39
C C+RL+ S H K +H+
Sbjct: 11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQ 40
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 29.6 bits (67), Expect = 0.15
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 145 KHRGDKVFYACD--RCDKRFSLLQNLKRHLAIHERI-AYQCN 183
G+K +AC C RFS L RH H + +
Sbjct: 6 SGTGEKP-FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 28.8 bits (65), Expect = 0.27
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 171 HLAIH--ERIAYQCNV--CDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ E+ + C C ++SR + H H+G K
Sbjct: 3 SGSSGTGEK-PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.16
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 171 HLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ ER Y CN C K + R S H+ H K
Sbjct: 3 SGSSGSGER-PYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
Y C+ C K F +L HL H E+ + +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREK-SSGPS 44
Score = 24.4 bits (54), Expect = 9.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ +G + Y C+ C K R ++L H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 30.7 bits (69), Expect = 0.16
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVF-------YACDRCDKRFSLLQNLKRHLAIH 175
C TF ++ H ++H G C R K F L H+ +H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 30.3 bits (68), Expect = 0.20
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 153 YACDRCDKRFSLLQNLKRHL-AIH----ERIAYQC-----NVCDKKYSRLSDYKIHMNMH 202
CD+ FS + L H+ H E+ + C K + H+ +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 203 NGFK-YQC 209
G K
Sbjct: 86 TGEKSGPS 93
Score = 26.1 bits (57), Expect = 5.6
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 14 PQKCPLCERLYKSVYRMKEHMKKQHKGQL---------YECDCCTEYFIDRIAYEEHVRL 64
+ C+R + +++ + H+ +H G EC + F + H+R+
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 65 HEG 67
H G
Sbjct: 85 HTG 87
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.17
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++CN C K +++ S +H +H G K
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.75
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G K+ + C+ C K F+ L +H+RI +
Sbjct: 7 GAGKKL-FKCNECKKTFT----QSSSLTVHQRIHTGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.18
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+VC K + S +H +H G K
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.79
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y CD C K F +L H IH E+ +
Sbjct: 7 GTGEKP-YKCDVCHKSFRYGSSLTVHQRIHTGEK-PSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.20
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K + S IH H+G K
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K F + LAIH+ +
Sbjct: 7 GTGEKP-YKCNECGKAFR----ARSSLAIHQATHSGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.22
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C++C K + S H +H K
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K + CD C K F L RH +H
Sbjct: 7 GTGEKP-FKCDICGKSFCGRSRLNRHSMVH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 29.6 bits (66), Expect = 0.22
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 7/61 (11%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERIAYQCNVCDKKYSRLSDYKIHMNMHNGF 205
H GD+ C +C F L R C C K + + +G
Sbjct: 13 HLGDRS-QKCSKCGIIFIRRSTLSRRKT------PMCEKCRKDSCQEAALNKDEGNESGK 65
Query: 206 K 206
K
Sbjct: 66 K 66
Score = 27.7 bits (61), Expect = 1.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 167 NLKRHLAIHE-RIAYQCNVCDKKYSRLSDYKIHMNMHNGFKYQCHICLKCTSRKNYLKRH 225
+ + IH + +C+ C + R S C C K + ++ L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK------TPMCEKCRKDSCQEAALNKD 58
Score = 26.2 bits (57), Expect = 4.1
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 9/52 (17%)
Query: 124 QCNLCADTFCPRSNMLRHYLLKHRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
+C+ C F RS + R C++C K L +
Sbjct: 20 KCSKCGIIFIRRSTLSRRKT---------PMCEKCRKDSCQEAALNKDEGNE 62
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.23
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C VC K + S H ++H+G +
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 27.5 bits (62), Expect = 0.66
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C C K F + +L +H ++H ER +
Sbjct: 7 GTGEK-PYKCQVCGKAFRVSSHLVQHHSVHSGER-PSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.23
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K +++ S H +H G K
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G K Y C+ C K F+ QN HLA H I +
Sbjct: 7 GTGKKP-YKCNECGKVFT--QN--SHLARHRGIHTGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 29.0 bits (66), Expect = 0.23
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCH 210
Y+CN C K +SR S H +H G K
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K FS L+ H++I +
Sbjct: 7 GTGEK-RYKCNECGKVFS----RNSQLSQHQKIHTGEKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.24
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y CNVC K + + H+ +H
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K Y+C+ C K F L +L +HL +H
Sbjct: 7 GTGEKP-YSCNVCGKAFVLSAHLNQHLRVH 35
Score = 25.2 bits (56), Expect = 5.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G K Y C++C K +L +H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.26
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K + C+ C KRF+ QN HL H+R+ +
Sbjct: 7 GSGEKP-FQCEECGKRFT--QN--SHLHSHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.30
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCH 210
+QC C K++++ S H +H G K
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 9.1
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ +G K +QC C K ++ ++L H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.28
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y C+ C K +S S IHM H+G K
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
G+K Y C C K FS K +L IH R
Sbjct: 7 GAGEKP-YGCSECGKAFS----SKSYLIIHMRT 34
Score = 25.2 bits (56), Expect = 5.5
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G K Y C C K S K+YL H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.29
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCH 210
Y+C+ C K + R S H +H G K
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.99
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K F HLA H+ I +
Sbjct: 7 GTGEK-PYKCHECGKVFR----RNSHLARHQLIHTGEKPSGPS 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 28.1 bits (63), Expect = 0.32
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMH 202
+QC CD+ +SR +H H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.39
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 145 KHRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G K F C CD+ FS +L H H
Sbjct: 5 GSTGIKPF-QCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.40
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRHI 226
G K +QC C + SR ++L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.34
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCH 210
++C C K + + H+ +H G K
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.54
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K + C C K F HLA H RI +
Sbjct: 7 GSGEK-PFKCKECGKAFR----QNIHLASHLRIHTGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.36
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCH 210
Y+CN C K +++ S H +H G K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 27.5 bits (62), Expect = 0.78
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K F+ QN HLA H+RI +
Sbjct: 7 GTGEKP-YKCNECGKVFT--QN--SHLANHQRIHTGVKPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 28.3 bits (64), Expect = 0.38
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C C K +SR S +H +H G K
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 6.8
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K + C C K FS L H +H
Sbjct: 7 GTGEKP-FKCVECGKGFSRRSALNVHHKLH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.40
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C K +SR H H G K
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 25.9 bits (58), Expect = 2.5
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+ Y C C K FS K L H+R +
Sbjct: 7 GTGENP-YECHECGKAFS----RKYQLISHQRTHAGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.42
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C VC K +++ + H H G K
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.72
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K F+ K HLA H++ +
Sbjct: 7 GTGEKP-YECKVCSKAFT----QKAHLAQHQKTHTGEKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.43
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K +++ S H +H G K
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 27.1 bits (61), Expect = 0.85
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K F+ QN HLA H R+ +
Sbjct: 7 GTGEKP-YKCNECGKVFT--QN--SHLARHRRVHTGGKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.45
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 174 IHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
YQCN C K +S+ S H +H G K
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.9
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G K Y C+ C K FS LA H+R+ +
Sbjct: 7 GTGGKP-YQCNECGKAFS----QTSKLARHQRVHTGEKPSGPS 44
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 27.5 bits (61), Expect = 0.46
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 207 YQCHICLKCTSRKNYLKRHIIMMH 230
Y C +C + +R++ L RH +H
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIH 26
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.47
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K +S S H +H G K
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 26.3 bits (59), Expect = 1.6
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C++C K FS ++ L H+ I +
Sbjct: 7 GTGEKP-YECNQCGKAFS----VRSSLTTHQAIHTGKKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 27.9 bits (63), Expect = 0.47
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G K Y C +C K FS LK L +H+R +
Sbjct: 7 GTGVKP-YGCSQCAKTFS----LKSQLIVHQRSHTGVKPSGPS 44
Score = 27.5 bits (62), Expect = 0.81
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y C+ C K +S S +H H G K
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 27.7 bits (62), Expect = 0.48
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH 175
+ C+ C + F+ ++LKRH H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 25.7 bits (57), Expect = 2.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK 206
+ C VC + ++R K H H K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.4 bits (56), Expect = 2.9
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 206 KYQCHICLKCTSRKNYLKRHIIMMHTK 232
+ C +C + +R+ +LKRH HT
Sbjct: 2 SFVCEVCTRAFARQEHLKRH-YRSHTN 27
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.49
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K +++ S H +H G K
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K F+ QN HLA H I +
Sbjct: 7 GTGEKP-YKCNECGKVFT--QN--SHLARHRGIHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.50
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K + D H +H G K
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C+ C K F ++L H +H E+ +
Sbjct: 7 GTGEKP-YKCEECGKGFICRRDLYTHHMVHTGEK-PSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 28.0 bits (63), Expect = 0.50
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK 206
Y C C K +++ +H +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 27.2 bits (61), Expect = 0.80
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
G+ Y C +C K F+ + LA+H+R
Sbjct: 6 SGGETP-YLCGQCGKSFT----QRGSLAVHQRS 33
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.52
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C K ++R S IH H G +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 27.9 bits (63), Expect = 0.55
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K F+ K L IH++ +
Sbjct: 7 GTGEKP-YKCSDCGKAFT----RKSGLHIHQQSHTGERHSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.54
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C K + + S +H +H G
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 26.0 bits (58), Expect = 2.3
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K F K L +H+RI +
Sbjct: 7 GTGEKP-YECSDCGKSFI----KKSQLHVHQRIHTGENPSGPS 44
Score = 24.4 bits (54), Expect = 9.0
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G K Y+C C K +K+ L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.8 bits (63), Expect = 0.54
Identities = 10/43 (23%), Positives = 11/43 (25%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y CN C K + S IH H G
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 25.9 bits (58), Expect = 2.5
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 10/42 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQC 182
G K Y C+ C K F K +L IH R
Sbjct: 7 GTGMKP-YVCNECGKAFR----SKSYLIIHTRTHTGESGPSS 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.57
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y C C K +SR H +H+G K
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.9
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G K Y C C K SR L +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 25.2 bits (56), Expect = 4.5
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K+ Y C C K FS L HER+ +
Sbjct: 7 GTGEKL-YNCKECGKSFS----RAPCLLKHERLHSGEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.58
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++CN C K + R S H+ +H+ K
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 27.1 bits (61), Expect = 1.0
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G++ + C+ C K F + HLA H R+ + +
Sbjct: 7 GSGERP-FKCNECGKGFG----RRSHLAGHLRLHSREKSSGPS 44
Score = 24.4 bits (54), Expect = 8.4
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ +G + ++C+ C K R+++L H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.58
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y CN C K +S S H +H G K
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 2.9
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G K Y C+ C K FS+ +L H IH E+ +
Sbjct: 7 GTGVKP-YMCNECGKAFSVYSSLTTHQVIHTGEK-PSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.59
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C K + R + H +H G++
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 25.5 bits (57), Expect = 3.6
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C C K F +L H IH R +
Sbjct: 7 GSGEK-PYKCSECGKAFHRHTHLNEHRRIHTGYR-PSGPS 44
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.1 bits (64), Expect = 0.61
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 17 CPLCERL-YKSVYRMKEHMKKQHKGQ-LYECDCCTEYFIDRIAYEEHVR 63
CP C + K++ +K+HM+ K Q +C C + F + H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 28.0 bits (61), Expect = 1.5
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 1 MRYYESDLKDKVVPQKCPLCERLYKSVYRMKEHMKKQHKGQ 41
++ + + KC C + +KS + H +H +
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 27.6 bits (60), Expect = 2.4
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 171 HLAIHERIAYQCNVCDK-KYSRLSDYKIHMNMHNGFK--YQCHICLKCTSRKNYLKRHII 227
AIHER C C+ L K HM + + +C C K K L H +
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 228 MMHT 231
H+
Sbjct: 76 AEHS 79
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.62
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K +++ S H +H G K
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K F+ QN HL H RI +
Sbjct: 7 GSGEKP-YKCNECGKVFT--QN--SHLTNHWRIHTGEKPSGPS 44
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 28.7 bits (63), Expect = 0.67
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 179 AYQCNVCDKKYSRLSDYKIHMNMHN 203
YQC CD K ++ H+N+HN
Sbjct: 25 TYQCKHCDSKLQSTAELTSHLNIHN 49
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.67
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K Y+R + +H +H G K
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 25.1 bits (56), Expect = 4.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
Y C+ C K ++ NL H +H E+ +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK-TSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 27.5 bits (62), Expect = 0.67
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K +S+ + H +H G K
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K FS HL H+R+ +
Sbjct: 7 GTGEKP-YECKECGKAFS----QTTHLIQHQRVHTGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.4 bits (62), Expect = 0.74
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 170 RHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ E+ Y+CN C K +++ S H +H G K
Sbjct: 2 SSGSSGTGEK-PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K F+ QN HL H I +
Sbjct: 7 GTGEKP-YKCNECGKVFT--QN--SHLVRHRGIHTGEKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 27.1 bits (61), Expect = 0.75
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
G+K Y CD+C K FS K L +H R+
Sbjct: 6 SGGEKP-YRCDQCGKAFS----QKGSLIVHIRV 33
Score = 26.8 bits (60), Expect = 1.1
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK 206
Y+C+ C K +S+ +H+ +H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.76
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K + S H +H G +
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 25.2 bits (56), Expect = 5.4
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C C K F + +H +H +R +
Sbjct: 7 GTGEKP-YKCMECGKAFGDNSSCTQHQRLHTGQR-PSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.78
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++CN C K + + + H +H G K
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G++ + C+ C K F HL H+RI +
Sbjct: 7 GTGERP-HKCNECGKSFI----QSAHLIQHQRIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.80
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C C K ++R S +H +H G K
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.9
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G K + C C K F+ K L++H++I +
Sbjct: 7 GTGGK-HFECTECGKAFT----RKSTLSMHQKIHTGEKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.83
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K +S+ S H +H G K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.9
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K FS LA H+RI +
Sbjct: 7 GTGEKP-YKCNECGKAFS----QTSKLARHQRIHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.83
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 174 IHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y CN C K +S+ S H H G K
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K FS K L+ H+R +
Sbjct: 7 GSGEKP-YGCNECGKTFS----QKSILSAHQRTHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.5
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 197 IHMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ +G K Y C+ C K S+K+ L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.84
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K +++ ++ H +H G K
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K F+ K +L H+RI +
Sbjct: 7 GTGEKP-YRCGECGKAFA----QKANLTQHQRIHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.85
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K + S+ H +H G K
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 4.3
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C+ C K F NL H IH E+ +
Sbjct: 7 GTGEKP-YKCNECGKAFRAHSNLTTHQVIHTGEK-PSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.86
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQCH 210
Y+CN C K + S H +H G K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 3.7
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C+ C K F L RH IH E+ +
Sbjct: 7 GTGEKP-YKCNECGKVFRHNSYLSRHQRIHTGEK-PSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.87
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
YQC+ C K +S H H K
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 25.6 bits (57), Expect = 3.4
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C C K FS L +H H E+ +
Sbjct: 7 GEGEKP-YQCSECGKSFSGSYRLTQHWITHTREK-PSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.89
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K ++ S+ H +H G K
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 4.4
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K Y C C K F+ NL H IH
Sbjct: 7 GTGEKP-YRCAECGKAFTDRSNLFTHQKIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.89
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K + C+ C KRF+ QN L H+R+ +
Sbjct: 7 GSGEKP-FKCEECGKRFT--QN--SQLHSHQRVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C C K++++ S H +H G K
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (61), Expect = 0.90
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
K + C C + F+ LK HL H+RI
Sbjct: 7 GSSTKS-HQCHECGRGFT----LKSHLNQHQRI 34
Score = 25.2 bits (56), Expect = 4.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK 206
+QC+ C + ++ S H +H G K
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEK 39
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 27.1 bits (61), Expect = 0.93
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y C C K + S H +H+G K
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 26.0 bits (58), Expect = 2.6
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C C K F L +H +H E+ +
Sbjct: 7 GTGEKP-YNCKECGKSFRWASCLLKHQRVHSGEK-PSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.94
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C K ++ S +IH H G +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 26.7 bits (60), Expect = 1.1
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K F+ K L IH++ +
Sbjct: 7 GTGEKP-YKCSDCGKSFT----WKSRLRIHQKCHTGERHSGPS 44
Score = 24.4 bits (54), Expect = 9.9
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G K Y+C C K + K+ L+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.95
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y C VC K ++ S+ H +H G K
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 2.7
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G++ Y C C K F+ NL +H IH E+ +
Sbjct: 7 GTGERP-YICTVCGKAFTDRSNLIKHQKIHTGEK-PSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.0
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K + C C K + N + HL H+R+ +
Sbjct: 7 GTGEK-PFKCGECGKSY----NQRVHLTQHQRVHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.9
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C C K Y++ H +H G K
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/43 (18%), Positives = 11/43 (25%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ C C K +S H +H G K
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K + C C K FS L +H IH
Sbjct: 7 GTGEKP-FDCIDCGKAFSDHIGLNQHRRIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.1
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K Y R D H +H G K
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 26.0 bits (58), Expect = 2.9
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C C K + + L H+R+ +
Sbjct: 7 GSGEKP-YKCVECGKGYK----RRLDLDFHQRVHTGEKLSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.1
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 170 RHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ E+ ++C C K +S S +H +H G
Sbjct: 2 SSGSSGTGEK-PHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K + C C K FS L +H+RI +
Sbjct: 7 GTGEKP-HECRECGKSFS----FNSQLIVHQRIHTGENPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y C+ C K + ++ H +H G K
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.2
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y CD C K F L L RH IH E+ +
Sbjct: 7 GSGEKP-YVCDYCGKAFGLSAELVRHQRIHTGEK-PSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.9 bits (60), Expect = 1.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K Y+C C + FS L +H +H
Sbjct: 5 SSGEKP-YSCAECKETFSDNNRLVQHQKMH 33
Score = 24.6 bits (54), Expect = 7.2
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNG 204
Y C C + +S + H MH
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTV 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 1.3
Identities = 9/43 (20%), Positives = 11/43 (25%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K + S H H G K
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.4
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G + Y C C K F K L H R +
Sbjct: 7 GTGQRP-YECIECGKAFK----TKSSLICHRRSHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.3
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y C C K ++ S+ H +H K
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 25.9 bits (58), Expect = 2.2
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C C K F++ NL +H IH ++ +
Sbjct: 7 GTGEKP-YICAECGKAFTIRSNLIKHQKIHTKQK-PSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.3
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+ + C C K F+ K +L IH++I +
Sbjct: 7 GTGENP-FICSECGKVFT----HKTNLIIHQKIHTGERPSGPS 44
Score = 25.9 bits (58), Expect = 2.3
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ C+ C K ++ ++ IH +H G +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 26.4 bits (59), Expect = 1.4
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 153 YACDR--CDKRFSLLQNLKRHLAIH 175
+ C C KRF+ L+RH H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 24.9 bits (55), Expect = 4.4
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 180 YQCNV--CDKKYSRLSDYKIHMNMHNGFK 206
+ C C K+++R + + H H G K
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C K ++R S +H +H G K
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 4.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G++ Y C C K F+ K L +H+RI +
Sbjct: 7 GTGERH-YECSECGKAFA----RKSTLIMHQRIHTGEKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y CN C K + + S H +H G K
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.8
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K Y C+ C K F K HL H RI +
Sbjct: 7 GTGEKP-YICNECGKSFI----QKSHLNRHRRIHTGEKPSGPS 44
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 1.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHER 177
+ C++C+K FS + L +H IH R
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTR 37
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.7
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C+ C K ++ S+ +H H G K
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 25.1 bits (56), Expect = 5.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
G+K + C C K F+ K +L +H+R
Sbjct: 7 GTGEKP-FECSECQKAFN----TKSNLIVHQRT 34
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.4 bits (59), Expect = 1.8
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+C C K + S +H H K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 26.0 bits (58), Expect = 2.2
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G+K C C K F K L +H+R +
Sbjct: 7 GTGEKP-CKCTECGKAFC----WKSQLIMHQRTHVDDKHSGPS 44
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 28.7 bits (65), Expect = 1.9
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 234 EGQIGEMEDKVGEKKIGEIEAKVGEGNQGKEGGNQTEVGETSMLSNLSKHTHPL 287
Q+ E DK+ IE+ + +G ++ + + + L++ + L
Sbjct: 159 RKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAI--EAKMQELAQVSQKL 210
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.4 bits (59), Expect = 2.0
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHER 177
K Y C+ C K F+ + +L RH IH R
Sbjct: 7 GTDSKS-YNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 24.5 bits (54), Expect = 7.4
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ K Y C+ C K +R +L RH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 26.3 bits (59), Expect = 2.0
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 170 RHLAIH--ERIAYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
+ E+ ++C C K +S S H +H G K
Sbjct: 2 SSGSSGTGEK-PFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 4.6
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
G+K + C C K FS + LA H+RI
Sbjct: 7 GTGEKP-FECAECGKSFS----ISSQLATHQRI 34
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 2.3
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G++ + C C K F N +H IH
Sbjct: 7 GHGERG-HRCSDCGKFFLQASNFIQHRRIH 35
Score = 24.4 bits (54), Expect = 9.1
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C+ C K + + S++ H +H G K
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.0 bits (61), Expect = 2.4
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 123 LQCNLCADTFCPRSNMLRHYL-LKHRGDKVFYACDRCDKRFSLLQNLKRH---LAIHERI 178
QC +C+ S L HY KH Y + + K ++ E
Sbjct: 33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDR 92
Query: 179 AYQCNVCDKKYSRLSDYKIHMN 200
+ C VC+ +S + H
Sbjct: 93 SKCCPVCNMTFSSPVVAESHYI 114
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 2.4
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y C C K + S + H +H G K
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.0
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G+K Y C+ C K F L+ H IH E+ +
Sbjct: 7 GTGEKP-YNCEECGKAFIHDSQLQEHQRIHTGEK-PSGPS 44
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.0 bits (56), Expect = 2.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHER 177
Y+C C RF + H+ H+
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.6 bits (55), Expect = 3.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNG 204
Y C VC ++ R H+ H+G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 24.5 bits (52), Expect = 8.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 207 YQCHICLKCTSRKNYLKRHI 226
Y C +C RK+ + H+
Sbjct: 11 YSCPVCGLRFKRKDRMSYHV 30
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 2.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK 206
+ C+ C K + +S +IH +H G K
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 26.0 bits (58), Expect = 2.6
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K + CD C K F + L+ H +H
Sbjct: 7 GSGEKS-HTCDECGKNFCYISALRIHQRVH 35
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold,
hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB:
2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 28.6 bits (63), Expect = 2.5
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 204 GFKYQCHICLKCTSRK----NYLKRHIIMMHTKFEGQIG 238
G+K+ CH L S+ R +++M +F+G++G
Sbjct: 31 GYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLG 69
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.5 bits (55), Expect = 2.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIH 175
Y+C C KRFSL ++ H +H
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVH 26
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 2.6
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 175 HERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C K + + S +H +H G K
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 25.9 bits (58), Expect = 2.7
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQCN 183
G++ Y C C K F K L++H+RI +
Sbjct: 7 GTGERH-YECSECGKAFI----QKSTLSMHQRIHRGEKPSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 25.9 bits (58), Expect = 2.6
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C+ C K ++R H H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 24.8 bits (55), Expect = 6.2
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 10/42 (23%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI-----AYQC 182
G+ Y C C K F+ K L H+R
Sbjct: 5 SSGENP-YECSECGKAFN----RKDQLISHQRTHAGESGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 25.6 bits (57), Expect = 2.7
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHERI 178
Y C C K F K L +HERI
Sbjct: 11 YECQECGKSFR----QKGSLTLHERI 32
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 2.8
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 18/62 (29%)
Query: 45 CDCCTEYFIDRIAYEEHVRLHEGGIICRLCGEKFEKSLMRDHLV-THIPPEHRGKVSDAF 103
C C Y + E G ++C LCG ++ D LV T E R F
Sbjct: 24 CPECKVYPPKIV--ERFSE---GDVVCALCGL-----VLSDKLVDTR--SEWR-----TF 66
Query: 104 FN 105
N
Sbjct: 67 SN 68
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.5 bits (56), Expect = 3.0
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 152 FYACDRCDKRFSLLQNLKRHLAIHER 177
Y C C + F Q L H+ +H R
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVHRR 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 3.1
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K + ++ H +H G +
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 25.6 bits (57), Expect = 3.1
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH--ERIAYQCN 183
G K Y C C K F + +L +H +H ER + +
Sbjct: 7 GSGKKP-YECKECRKTFIQIGHLNQHKRVHTGER-SSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 3.3
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
++C C K + S H H+G K
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 24.8 bits (55), Expect = 6.1
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIH 175
G+K + C+ C K F H H
Sbjct: 7 GSGEKP-FKCEECGKGFYTNSQCYSHQRSH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 25.6 bits (57), Expect = 3.4
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRHIIMMHT 231
+ G K Y+C C K + L RH HT
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT 37
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium
tumefaciens}
Length = 87
Score = 26.4 bits (58), Expect = 3.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 64 LHEGGIICRLCGEKFEKSLMRDHLVTH--IPPEHRGK 98
+ + I+C CG F KSL R H P E+R K
Sbjct: 17 VQDDHIVCLECGGSF-KSLKRHLTTHHSMTPEEYREK 52
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 25.2 bits (56), Expect = 4.0
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 173 AIHERI-----AYQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+CN C K + S +H H G
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 24.4 bits (54), Expect = 8.1
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 146 HRGDKVFYACDRCDKRFSLLQNLKRHLAIHERI 178
G+K Y C+ C K F K L +HER
Sbjct: 7 GSGEKP-YECNECGKAFI----WKSLLIVHERT 34
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 28.4 bits (64), Expect = 4.1
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 234 EGQIGEMEDKVGEKKIGEIEAKVGEGNQGKEGGNQTEVGETSMLSNLSKHTHPL 287
Q+ E DK+ IE+ + +G ++ + + + L++ + L
Sbjct: 547 RKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAI--EAKMQELAQVSQKL 598
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 4.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHN 203
++C++C+ S+ K HMN H+
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHS 33
>2gvi_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1
g.39.1.18
Length = 204
Score = 27.4 bits (60), Expect = 5.7
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 35 KKQHKGQLYECDCCTEYFIDRIAYEEHVRLHEGGIICRLCGE 76
+ G CD C EY E +L G +C+
Sbjct: 165 PVKKNGAKVRCDVCGEYTY-----EADAKLLNGKPVCKPDYY 201
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 27.4 bits (61), Expect = 6.2
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 7/47 (14%)
Query: 48 CTEYFIDRIAYEEHVRLHEGGIICRLCGEKFEKSLMRDHLVTHIPPE 94
YF D +R H KF + + L + +
Sbjct: 300 HARYFGDAEGVRAVMRKH-----AASLAPKFN--KVLEILDSRLAEY 339
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 26.9 bits (60), Expect = 6.9
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 21/90 (23%)
Query: 108 QTALLTHYLKRNGIKLQCNLCADTFCPRSN----MLRHYLLKHRGDKV-----FYACDRC 158
Q + + N IK F RS M+ YL + + + +R
Sbjct: 20 QCMNIMESIPANTIKYL------NFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRW 73
Query: 159 DKRFSLLQNLKR-HLAIHER-----IAYQC 182
+ + + L++ I +R +AY
Sbjct: 74 EFASFIQEQLEQGITLIVDRYAFSGVAYAA 103
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 7.2
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 180 YQCNVCDKKYSRLSDYKIHMNMHNGFK-YQC 209
Y+C C K +SR H H+G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 24.4 bits (54), Expect = 8.6
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 198 HMNMHNGFK-YQCHICLKCTSRKNYLKRH 225
+ G Y+C C K SRK+ L H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 24.2 bits (52), Expect = 7.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 153 YACD--RCDKRFSLLQNLKRHLAIHER 177
Y+CD CDK F +L RH H+
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 24.3 bits (52), Expect = 8.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 153 YACDRCDKRFSLLQNLKRHLAIHE 176
Y C+RC KRF L H+ H+
Sbjct: 3 YVCERCGKRFVQSSQLANHIRHHD 26
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 24.4 bits (52), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 153 YACDRCDKRFSLLQNLKRHLA 173
+ C+ CD RFS +LKRH
Sbjct: 11 FFCNECDCRFSEEASLKRHTL 31
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.4 bits (53), Expect = 9.6
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 158 CDKRFSLLQNLKRHLAIH 175
C K F N++ H+ H
Sbjct: 26 CTKTFKRRYNIRSHIQTH 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.434
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,846,195
Number of extensions: 283764
Number of successful extensions: 1921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1617
Number of HSP's successfully gapped: 525
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)