BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7464
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 69/91 (75%)
Query: 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
LL GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 526
Query: 62 SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
SFETS PWD+ V LC NVK+R+TREC E V
Sbjct: 527 SFETSAPWDRVVDLCRNVKERITRECKEKGV 557
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 67/91 (73%)
Query: 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
LL GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD +YY IG+
Sbjct: 454 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGE 513
Query: 62 SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
SFETS PWD+ + LC NVK+R+ REC E V
Sbjct: 514 SFETSAPWDRVIDLCRNVKERIRRECKERGV 544
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 67/90 (74%)
Query: 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
LL GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
FETS PWD+ V LC NVK+R+ REC E V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGV 557
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 67/91 (73%)
Query: 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
LL GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY +G+
Sbjct: 453 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGE 512
Query: 62 SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
SFETS PWD+ + LC NVK+R+ REC E V
Sbjct: 513 SFETSAPWDRVIDLCRNVKERIRRECKERGV 543
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 64/90 (71%)
Query: 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
LL GD +DV+ E IY IA+++ G PAG NG RGY+LT++IAYIRDF + +S
Sbjct: 420 LLFEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAES 479
Query: 63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
FETSVPWD+ LLC +VK+R+ EC++ ++
Sbjct: 480 FETSVPWDRCSLLCRSVKQRVVSECSKRSI 509
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 58/86 (67%)
Query: 7 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 66
G+ E+V +E+++ +A+++ G+ G NG+ GY LT+ IAY+RD ++ +G+SFETS
Sbjct: 401 GNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETS 460
Query: 67 VPWDKTVLLCINVKKRLTRECTEGNV 92
VPWDK + LC NVK+ + RE V
Sbjct: 461 VPWDKVLSLCRNVKELMKREAKAQGV 486
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 613
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 15 NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74
++ + + +G G G Y + Y+RDFA + F D FETSV + +
Sbjct: 402 QRSELVGVFQAFGATCLGTKPGNTWQEKKYDLPYLRDFALAHNFWADVFETSVLYTDAIH 461
Query: 75 LCINVKKRLTRECTE 89
VKK E
Sbjct: 462 CWRAVKKSFAEVMAE 476
>sp|Q13E22|MNME_RHOPS tRNA modification GTPase MnmE OS=Rhodopseudomonas palustris (strain
BisB5) GN=mnmE PE=3 SV=2
Length = 460
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 26 YGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74
+GG A E + RG L +IA I DFA Y+ G++ S +T+L
Sbjct: 357 WGGNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLL 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,032,419
Number of Sequences: 539616
Number of extensions: 1835594
Number of successful extensions: 3367
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3359
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)