Query psy7464
Match_columns 119
No_of_seqs 104 out of 272
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:00:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.5 2.2E-14 7.4E-19 123.3 8.1 105 1-105 395-500 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.3 6.3E-12 2.2E-16 108.9 9.0 104 2-105 467-573 (658)
3 1e8g_A Vanillyl-alcohol oxidas 97.6 9.1E-05 3.1E-09 62.9 6.8 93 2-99 354-460 (560)
4 1f0x_A DLDH, D-lactate dehydro 97.3 1.5E-05 5E-10 68.6 -2.0 81 2-86 393-480 (571)
5 3pm9_A Putative oxidoreductase 97.3 0.00056 1.9E-08 57.2 7.0 92 1-99 291-389 (476)
6 2exr_A Cytokinin dehydrogenase 95.7 0.0012 4.2E-08 55.6 -1.0 67 6-81 324-401 (524)
7 1wvf_A 4-cresol dehydrogenase 95.5 0.034 1.2E-06 46.4 7.0 90 2-99 323-429 (520)
8 1hsk_A UDP-N-acetylenolpyruvoy 56.5 9.4 0.00032 29.9 3.5 35 1-35 274-309 (326)
9 2ozl_A PDHE1-A type I, pyruvat 51.8 44 0.0015 26.7 6.8 76 5-88 229-326 (365)
10 2ab1_A Hypothetical protein; H 42.0 21 0.00072 24.4 3.1 50 39-100 70-121 (122)
11 1l7b_A DNA ligase; BRCT, autos 41.5 15 0.00051 23.8 2.2 46 1-49 11-69 (92)
12 2fvt_A Conserved hypothetical 36.8 12 0.0004 26.2 1.1 28 39-66 76-103 (135)
13 1qs0_A 2-oxoisovalerate dehydr 36.4 1.1E+02 0.0038 24.7 7.1 76 5-89 273-370 (407)
14 1w1o_A Cytokinin dehydrogenase 36.0 12 0.00042 31.0 1.3 73 10-85 344-420 (534)
15 2gm2_A Conserved hypothetical 32.8 14 0.00047 25.7 0.9 45 39-95 73-117 (132)
16 3rhg_A Putative phophotriester 32.2 81 0.0028 25.0 5.5 83 14-100 103-201 (365)
17 1w85_A Pyruvate dehydrogenase 31.6 1.9E+02 0.0066 22.8 8.0 76 5-89 233-331 (368)
18 2kxh_B Peptide of FAR upstream 30.7 58 0.002 17.5 3.0 20 13-32 11-30 (31)
19 2fi9_A Outer membrane protein; 29.5 18 0.00062 24.8 1.1 26 41-66 79-104 (128)
20 4gb3_4 Coat protein 4; capsid 29.4 16 0.00055 23.1 0.7 12 104-115 49-60 (68)
21 1zzk_A Heterogeneous nuclear r 28.6 54 0.0018 20.2 3.2 27 2-28 53-79 (82)
22 3l3e_A DNA topoisomerase 2-bin 28.3 42 0.0014 21.5 2.7 28 1-31 19-46 (107)
23 1xim_A D-xylose isomerase; iso 27.8 1.1E+02 0.0038 23.8 5.6 51 52-104 41-96 (393)
24 4gxh_A Pyrrolidone-carboxylate 27.7 81 0.0028 23.4 4.5 62 36-102 109-172 (216)
25 2ebf_X Dermonecrotic toxin; pa 26.8 36 0.0012 30.1 2.6 22 15-36 359-380 (746)
26 3sb1_A Hydrogenase expression 26.7 43 0.0015 24.3 2.7 33 70-102 44-77 (160)
27 3out_A Glutamate racemase; str 26.7 50 0.0017 25.1 3.2 59 45-105 124-195 (268)
28 2kjw_A TS9, 30S ribosomal prot 26.0 52 0.0018 21.6 2.8 37 8-47 57-93 (96)
29 4e17_B Catenin alpha-1; four h 25.2 59 0.002 18.5 2.5 26 65-90 6-35 (40)
30 3vej_A Ubiquitin-like protein 25.2 19 0.00065 20.7 0.4 16 64-79 3-18 (41)
31 3av9_A Integrase, IN; protein- 24.1 1.3E+02 0.0045 20.3 4.8 65 16-85 69-135 (183)
32 3qvl_A Putative hydantoin race 24.1 59 0.002 24.3 3.1 30 74-103 157-189 (245)
33 1aym_4 HRV16, human rhinovirus 23.9 16 0.00056 23.1 0.0 12 104-115 49-60 (68)
34 3cpk_A Uncharacterized protein 22.8 28 0.00097 24.9 1.1 45 39-95 97-141 (150)
35 1cxq_A Avian sarcoma virus int 22.7 1.7E+02 0.0057 19.2 6.6 72 14-90 53-127 (162)
36 4f3q_A Transcriptional regulat 22.5 1.9E+02 0.0066 22.1 5.9 81 12-101 109-207 (247)
37 1use_A VAsp, vasodilator-stimu 21.5 91 0.0031 18.1 2.9 21 72-92 24-44 (45)
38 2gag_C Heterotetrameric sarcos 20.9 62 0.0021 23.6 2.7 36 60-99 170-206 (210)
39 3giu_A Pyrrolidone-carboxylate 20.8 1.3E+02 0.0045 22.2 4.5 60 38-102 111-172 (215)
40 3l3u_A POL polyprotein; DNA in 20.6 1.7E+02 0.0057 19.0 4.6 67 15-86 48-116 (163)
41 1a0c_A Xylose isomerase; ketol 20.5 33 0.0011 28.1 1.1 60 41-104 40-106 (438)
42 3ist_A Glutamate racemase; str 20.5 79 0.0027 24.0 3.3 18 87-104 174-194 (269)
43 3kks_A Integrase, IN; beta-str 20.5 1.7E+02 0.0058 18.4 4.8 68 15-87 41-110 (152)
44 2jfz_A Glutamate racemase; cel 20.2 1.1E+02 0.0037 22.6 3.9 57 45-104 121-189 (255)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.51 E-value=2.2e-14 Score=123.33 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=98.3
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHH
Q psy7464 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (119)
Q Consensus 1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~ 80 (119)
+++.|+|+++.|+.+.+++.++|+++||..+++...+.|+..|+..||+|+.++++|.+.+++||++||++++++++.++
T Consensus 395 llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~ 474 (584)
T 2uuu_A 395 SIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAK 474 (584)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHH
Confidence 36789999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccee-EeeecccCCC
Q psy7464 81 KRLTRECTEGNVLMM-LEQLPFGWPK 105 (119)
Q Consensus 81 ~al~~al~~~g~~~~-~~~l~~~~~~ 105 (119)
+.+.+.+.+.|.++. |+|+.|.|++
T Consensus 475 ~~l~~~~~~~g~~~~~~~h~gH~gd~ 500 (584)
T 2uuu_A 475 QTFVKHFKDQGIPAWICAHISHTYTN 500 (584)
T ss_dssp HHHHHHHHTTTCCEEEEEEEEEEETT
T ss_pred HHHHhHHHhcCCeeEEEEEEEeecCC
Confidence 999999999999988 9999988865
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.30 E-value=6.3e-12 Score=108.86 Aligned_cols=104 Identities=50% Similarity=0.949 Sum_probs=96.2
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHHH
Q psy7464 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (119)
Q Consensus 2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~ 81 (119)
++.|||+.+.|..+.+.+.++++++||+..++..+++|...||..||+|+..++.+.+.+++|++++|++++.+++++++
T Consensus 467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~ 546 (658)
T 4bby_A 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE 546 (658)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcc--ee-EeeecccCCC
Q psy7464 82 RLTRECTEGNVL--MM-LEQLPFGWPK 105 (119)
Q Consensus 82 al~~al~~~g~~--~~-~~~l~~~~~~ 105 (119)
.+.+.+.+.++. .+ .+|+.|.|+.
T Consensus 547 ~l~~~~~~~g~~~~~~~~~~~~h~~dg 573 (658)
T 4bby_A 547 RIRRECKEKGVQFPPLSTCRVTQTYDA 573 (658)
T ss_dssp HHHHHHHHTTCSSCCEEEEEEEEECSS
T ss_pred HHHHHHHhcCccccccceEEEEEEecc
Confidence 999999998874 34 6777777654
No 3
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.64 E-value=9.1e-05 Score=62.90 Aligned_cols=93 Identities=11% Similarity=-0.024 Sum_probs=67.3
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCccC--CCcc--hhhhhhhhhhh----hhhhhh---hhhccCceeeeeccccc-
Q psy7464 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW- 69 (119)
Q Consensus 2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~--G~~~--g~~W~~~RF~~----PYLRd~---l~~~G~~~DT~ETA~~W- 69 (119)
++.|+|+++.|+.+.+++.+||+++||..+ .+.+ .+.|.. |... |+++.. .|..|-...++++++||
T Consensus 354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~ 432 (560)
T 1e8g_A 354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS 432 (560)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence 466999999999999999999999998533 2222 345554 7654 776653 23333335668999999
Q ss_pred -cchHHHHHHHHHHHHHHHHhCCccee-Eeee
Q psy7464 70 -DKTVLLCINVKKRLTRECTEGNVLMM-LEQL 99 (119)
Q Consensus 70 -s~v~~l~~~V~~al~~al~~~g~~~~-~~~l 99 (119)
++++++++.+++. +++.|.+.. |.|.
T Consensus 433 ~~~l~~~~~~~~~~----~~~~g~~~~~~gH~ 460 (560)
T 1e8g_A 433 GEDAMMQYAVTKKR----CQEAGLDFIGTFTV 460 (560)
T ss_dssp HHHHHHHHHHHHHH----HHHHTCCCCEEEEE
T ss_pred HHHHHHHHHHHHHH----HHHcCCceEEEEEe
Confidence 9999999999654 456677766 7775
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=97.33 E-value=1.5e-05 Score=68.58 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=59.7
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCccC--CCcchhhhhhhhhhhh----hhhhhhhh-ccCceeeeeccccccchHH
Q psy7464 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL 74 (119)
Q Consensus 2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~--G~~~g~~W~~~RF~~P----YLRd~l~~-~G~~~DT~ETA~~Ws~v~~ 74 (119)
++-|+|+.... ..+++.+++++++|... .+..+++|...||..+ ++|+.+.+ .| .+.++|||+||++++.
T Consensus 393 lve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~ 469 (571)
T 1f0x_A 393 LLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW 469 (571)
T ss_dssp EEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred EEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence 45666666532 35666778888866443 4567888888999986 68887665 33 3689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy7464 75 LCINVKKRLTRE 86 (119)
Q Consensus 75 l~~~V~~al~~a 86 (119)
+ +.+++.+.+.
T Consensus 470 ~-~~~~~~l~~~ 480 (571)
T 1f0x_A 470 Y-EHLPPEIDSQ 480 (571)
T ss_dssp S-CCCCHHHHTT
T ss_pred H-HHHHHHHHhh
Confidence 9 8887777654
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=97.26 E-value=0.00056 Score=57.21 Aligned_cols=92 Identities=10% Similarity=-0.040 Sum_probs=63.5
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCccC---C---CcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHH
Q psy7464 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---G---ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (119)
Q Consensus 1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~---G---~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~ 74 (119)
+++.|+|+.+.++.+.+++.++|.++|+..- - +...+-|. .|-..+. .+...|. ..+.++++|||++++
T Consensus 291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~~---~~~~~g~-~~~~Dv~vP~~~l~~ 365 (476)
T 3pm9_A 291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEISP---AQKPEGG-SIKHDISVPVAAVPQ 365 (476)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHHH---HTGGGCC-EECCEEECCGGGHHH
T ss_pred EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHHH---HHhhcCC-ceeEEEEeeHHHHHH
Confidence 3678899888888889999999999987431 1 12334564 3444321 2223454 688999999999999
Q ss_pred HHHHHHHHHHHHHHhCCccee-Eeee
Q psy7464 75 LCINVKKRLTRECTEGNVLMM-LEQL 99 (119)
Q Consensus 75 l~~~V~~al~~al~~~g~~~~-~~~l 99 (119)
+++.+++.+.+.+. |.+.. |.|+
T Consensus 366 ~~~~~~~~~~~~~~--~~~~~~~gH~ 389 (476)
T 3pm9_A 366 FIEQANAAVVALIP--GARPVPFGHL 389 (476)
T ss_dssp HHHHHHHHHHHHST--TCEEEEEEEG
T ss_pred HHHHHHHHHHHhcC--CCeEEEEEEe
Confidence 99999877766532 56666 7775
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=95.69 E-value=0.0012 Score=55.57 Aligned_cols=67 Identities=6% Similarity=-0.132 Sum_probs=50.6
Q ss_pred eC-ChHHHHhHHHHHHHHHHHcCCccCCCc----------chhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHH
Q psy7464 6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (119)
Q Consensus 6 EG-~~~~V~~~~~~~~~I~~~~GG~~~G~~----------~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~ 74 (119)
+| +++.|+.+.+++.++++.+||....+. ....|...++..|.+.. . ++++++|||++++
T Consensus 324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~ 394 (524)
T 2exr_A 324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD 394 (524)
T ss_dssp TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence 78 778899999999999999999755432 22347766665554432 1 3699999999999
Q ss_pred HHHHHHH
Q psy7464 75 LCINVKK 81 (119)
Q Consensus 75 l~~~V~~ 81 (119)
+.+.|.+
T Consensus 395 ~~~~v~~ 401 (524)
T 2exr_A 395 FNRTVFK 401 (524)
T ss_dssp HHHHCCC
T ss_pred HHHHHHH
Confidence 9998866
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=95.46 E-value=0.034 Score=46.43 Aligned_cols=90 Identities=9% Similarity=-0.161 Sum_probs=54.8
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhh----------------hccCceeeeec
Q psy7464 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC----------------DYYFIGDSFET 65 (119)
Q Consensus 2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~----------------~~G~~~DT~ET 65 (119)
++.|+|++++|+.+.+++.++++++|+..+. ...+.+ +-...++|..+. ..+.+.++.-.
T Consensus 323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 398 (520)
T 1wvf_A 323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS 398 (520)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence 4559999999999999999999999985432 111211 112222333222 01233344445
Q ss_pred cccccchHHHHHHHHHHHHHHHHhCCccee-Eeee
Q psy7464 66 SVPWDKTVLLCINVKKRLTRECTEGNVLMM-LEQL 99 (119)
Q Consensus 66 A~~Ws~v~~l~~~V~~al~~al~~~g~~~~-~~~l 99 (119)
..+|++++++++.+++. +++.|.+.. +.|+
T Consensus 399 p~~~~~l~~~~~~~~~~----~~~~~~~~~~~gh~ 429 (520)
T 1wvf_A 399 EARGSECKKQAAMAKRV----LHKYGLDYVAEFIV 429 (520)
T ss_dssp ESCHHHHHHHHHHHHHH----HHHTTCCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHH----HHHcCCCeeEeecc
Confidence 55668888888777544 456677666 7775
No 8
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=56.46 E-value=9.4 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=29.8
Q ss_pred CEEEEeC-ChHHHHhHHHHHHHHHHHcCCccCCCcc
Q psy7464 1 MALLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESN 35 (119)
Q Consensus 1 ~vlgfEG-~~~~V~~~~~~~~~I~~~~GG~~~G~~~ 35 (119)
+++-++| +.++|....+.+.+++++++|+.++.++
T Consensus 274 ~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 274 FMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 3567788 6788999999999999999999888754
No 9
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=51.76 E-value=44 Score=26.70 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=47.1
Q ss_pred EeC-ChHHHHhHHHHHHHHHHHcCCccC-------------CC--------cchhhhhhhhhhhhhhhhhhhhccCceee
Q psy7464 5 VLG-DPEDVKNNEDKIYSIAKRYGGIPA-------------GE--------SNGRRGYMLTYIIAYIRDFACDYYFIGDS 62 (119)
Q Consensus 5 fEG-~~~~V~~~~~~~~~I~~~~GG~~~-------------G~--------~~g~~W~~~RF~~PYLRd~l~~~G~~~DT 62 (119)
..| +...|....+.+.+.+++.+|-.+ +. ...+.|++.+=-..-+|+.|.+.|++.+
T Consensus 229 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~- 307 (365)
T 2ozl_A 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASV- 307 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCH-
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCH-
Confidence 456 346677777777777777777321 11 1234565544333457889999999876
Q ss_pred eeccccccchHHHHHHHHHHHHHHHH
Q psy7464 63 FETSVPWDKTVLLCINVKKRLTRECT 88 (119)
Q Consensus 63 ~ETA~~Ws~v~~l~~~V~~al~~al~ 88 (119)
+.+.++.+++++.|.++++
T Consensus 308 -------~~~~~i~~~~~~~v~~a~~ 326 (365)
T 2ozl_A 308 -------EELKEIDVEVRKEIEDAAQ 326 (365)
T ss_dssp -------HHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666543
No 10
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=41.97 E-value=21 Score=24.35 Aligned_cols=50 Identities=8% Similarity=-0.084 Sum_probs=36.4
Q ss_pred hhhhhh-hhhhhhhhhhhccCceeeeeccccccchHHHHHHHHHHHHHHHHhCCccee-Eeeec
Q psy7464 39 GYMLTY-IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMM-LEQLP 100 (119)
Q Consensus 39 W~~~RF-~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~al~~~g~~~~-~~~l~ 100 (119)
+...+| -.|-+++.|.++|+-+|.+.|..- -+ .-+.|..+|.++. .-|++
T Consensus 70 G~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A----~r--------tyN~L~~EgR~VaAal~~t 121 (122)
T 2ab1_A 70 GMSEALKVPSSTVEYLKKHGIDVRVLQTEQA----VK--------EYNALVAQGVRVGGVFHST 121 (122)
T ss_dssp CSSCCSCCCHHHHHHHHHTTCEEEEECHHHH----HH--------HHHHHHHTTCCEEEEEECC
T ss_pred CCCCccCCCHHHHHHHHHcCCEEEEeCHHHH----HH--------HHHHHHhCCCcEEEEEeec
Confidence 566788 668999999999999999988532 22 2344667777777 66654
No 11
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=41.45 E-value=15 Score=23.84 Aligned_cols=46 Identities=13% Similarity=0.318 Sum_probs=31.1
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCc------------cCCCcchhhhhhh-hhhhhhh
Q psy7464 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI------------PAGESNGRRGYML-TYIIAYI 49 (119)
Q Consensus 1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~------------~~G~~~g~~W~~~-RF~~PYL 49 (119)
+++.|+|.-.. .+..+.+++.++||. +.|+.+|.+..+. .+.+|-+
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii 69 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTL 69 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCE
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEE
Confidence 46788887644 577888999999994 3466667665554 4444543
No 12
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=36.80 E-value=12 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.5
Q ss_pred hhhhhhhhhhhhhhhhhccCceeeeecc
Q psy7464 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (119)
Q Consensus 39 W~~~RF~~PYLRd~l~~~G~~~DT~ETA 66 (119)
+...+|--|-+|+.|.++|+-+|.+.|.
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 4556787789999999999999999996
No 13
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=36.41 E-value=1.1e+02 Score=24.69 Aligned_cols=76 Identities=12% Similarity=-0.015 Sum_probs=46.3
Q ss_pred EeCCh-HHHHhHHHHHHHHHHHcCCccC-------------CCcc--------hhhhhhhhhhhhhhhhhhhhccCceee
Q psy7464 5 VLGDP-EDVKNNEDKIYSIAKRYGGIPA-------------GESN--------GRRGYMLTYIIAYIRDFACDYYFIGDS 62 (119)
Q Consensus 5 fEG~~-~~V~~~~~~~~~I~~~~GG~~~-------------G~~~--------g~~W~~~RF~~PYLRd~l~~~G~~~DT 62 (119)
..|.+ ..|....+.+.+.+++.+|-.+ +..+ .+.|.+ |=-+.-+|+.|.+.|++.+
T Consensus 273 VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~- 350 (407)
T 1qs0_A 273 VDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSE- 350 (407)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCCH-
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCH-
Confidence 45643 5677777777777777777211 1111 235664 3112358899999999877
Q ss_pred eeccccccchHHHHHHHHHHHHHHHHh
Q psy7464 63 FETSVPWDKTVLLCINVKKRLTRECTE 89 (119)
Q Consensus 63 ~ETA~~Ws~v~~l~~~V~~al~~al~~ 89 (119)
+.+.++.+++++.|.++++.
T Consensus 351 -------~~~~~i~~~~~~~v~~a~~~ 370 (407)
T 1qs0_A 351 -------EEHQATTAEFEAAVIAAQKE 370 (407)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666543
No 14
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=36.01 E-value=12 Score=30.99 Aligned_cols=73 Identities=8% Similarity=-0.058 Sum_probs=39.8
Q ss_pred HHHHhHHHHHHHHHHHcCCccCC-Ccchhhhhhhhhhhhh--hhhh-hhhccCceeeeeccccccchHHHHHHHHHHHHH
Q psy7464 10 EDVKNNEDKIYSIAKRYGGIPAG-ESNGRRGYMLTYIIAY--IRDF-ACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 85 (119)
Q Consensus 10 ~~V~~~~~~~~~I~~~~GG~~~G-~~~g~~W~~~RF~~PY--LRd~-l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~ 85 (119)
+.++...+.+.++++.+|+.... ..+...|.+ ++.... +|.. ++..+- -..++++|||+++++.+.+.+++.+
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~-~~~~~~w~~r~~~~~~~~~--~~~d~~vP~s~l~~~~~~~~~~l~~ 420 (534)
T 1w1o_A 344 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLD-RVHGEEVALNKLGLWRVPH--PWLNMFVPRSRIADFDRGVFKGILQ 420 (534)
T ss_dssp CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHT-HHHHHHHHHHHTTCSSSCC--CCEEEEEEGGGHHHHHHHHTTTTTT
T ss_pred hhhHHHHHHHHHhhcccCCcceeccchHHHHhh-hhhhhHHHHhhccccccCC--ccccEEecHHHHHhHHHHHHHHHhh
Confidence 66777788888888777773221 111222221 222221 2221 121111 0238889999999999888665544
No 15
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=32.79 E-value=14 Score=25.65 Aligned_cols=45 Identities=2% Similarity=-0.152 Sum_probs=32.5
Q ss_pred hhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHHHHHHHHHHhCCccee
Q psy7464 39 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMM 95 (119)
Q Consensus 39 W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~al~~~g~~~~ 95 (119)
+...+|--|-+|+.|.+.|+-+|.+.|.. .-+. -+.|..+|.++.
T Consensus 73 G~~~~~l~p~~~~~l~~~GI~vE~m~T~a----AcrT--------yNiL~~EgR~Va 117 (132)
T 2gm2_A 73 GERQQFPSTDVLAACLTRGIGLEAMTNAA----AART--------YNVLASEGRRVA 117 (132)
T ss_dssp TTSCCCCCHHHHHHHHHHTCEEEEECHHH----HHHH--------HHHHHHHTCCEE
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHHH----HHHH--------HHHHHhCCCcEE
Confidence 45567878999999999999999999943 2222 334566666666
No 16
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=32.24 E-value=81 Score=24.98 Aligned_cols=83 Identities=13% Similarity=-0.030 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcC-CccCCCcch-----hhhhhhhhhhhhhhhhhhhc--------cCceeee-eccccccchHHHHHH
Q psy7464 14 NNEDKIYSIAKRYG-GIPAGESNG-----RRGYMLTYIIAYIRDFACDY--------YFIGDSF-ETSVPWDKTVLLCIN 78 (119)
Q Consensus 14 ~~~~~~~~I~~~~G-G~~~G~~~g-----~~W~~~RF~~PYLRd~l~~~--------G~~~DT~-ETA~~Ws~v~~l~~~ 78 (119)
.....+.+++++.| .++.+.+.- -.|... ...-|.+.+.+- ++-+--+ |++.+|.--..-.+.
T Consensus 103 r~~~~l~~la~~~gi~i~~~tG~y~~~~~P~~~~~--~~~~L~~~~~~ei~~gi~~t~vkag~IGEiGld~~~t~~q~~~ 180 (365)
T 3rhg_A 103 RDIRKLKQVAELTGINVVASSGLYIEKFEGKRLAD--DIDAMAKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNS 180 (365)
T ss_dssp CCHHHHHHHHHHHCCEEECEECCCCHHHHGGGGGS--CHHHHHHHHHHHHHTCSTTSSCCCCEEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHCCcEEEEeCccCCCCCchhhcC--CHHHHHHHHHHHHHhccccCCceeEEEEEEEcCCCCCHHHHHH
Confidence 45667788888888 455443322 123222 333344333221 1222223 889998533333333
Q ss_pred HHHHHHHHHHhC-CcceeEeeec
Q psy7464 79 VKKRLTRECTEG-NVLMMLEQLP 100 (119)
Q Consensus 79 V~~al~~al~~~-g~~~~~~~l~ 100 (119)
+++.++ +.++. |.| ++.|.|
T Consensus 181 f~aq~~-~A~~~~glP-V~iH~~ 201 (365)
T 3rhg_A 181 LRAAAL-AQNNNPYAS-MNIHMP 201 (365)
T ss_dssp HHHHHH-HHTTCTTCE-EEEECC
T ss_pred HHHHHH-HHHHhcCCc-EEEECC
Confidence 333333 33445 655 567763
No 17
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=31.60 E-value=1.9e+02 Score=22.82 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=47.4
Q ss_pred EeC-ChHHHHhHHHHHHHHHHHcCCccC---------CCc-----c--------hhhhhhhhhhhhhhhhhhhhccCcee
Q psy7464 5 VLG-DPEDVKNNEDKIYSIAKRYGGIPA---------GES-----N--------GRRGYMLTYIIAYIRDFACDYYFIGD 61 (119)
Q Consensus 5 fEG-~~~~V~~~~~~~~~I~~~~GG~~~---------G~~-----~--------g~~W~~~RF~~PYLRd~l~~~G~~~D 61 (119)
..| +...|....+.+.+.+++.+|-.+ |-. + .+.|.+ |=-+.-+|+.|.+.|++.+
T Consensus 233 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~ 311 (368)
T 1w85_A 233 VDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSE 311 (368)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT-TCHHHHHHHHHHHTTCCCH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHcCCCCH
Confidence 456 346777778888877777666211 111 1 456765 3222358899999999876
Q ss_pred eeeccccccchHHHHHHHHHHHHHHHHh
Q psy7464 62 SFETSVPWDKTVLLCINVKKRLTRECTE 89 (119)
Q Consensus 62 T~ETA~~Ws~v~~l~~~V~~al~~al~~ 89 (119)
+.+.++.+++++.|.++.+.
T Consensus 312 --------~~~~~i~~~~~~~v~~a~~~ 331 (368)
T 1w85_A 312 --------EEENNVIEQAKEEIKEAIKK 331 (368)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHH
Confidence 44566777777776666543
No 18
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=30.67 E-value=58 Score=17.53 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHcCCccCC
Q psy7464 13 KNNEDKIYSIAKRYGGIPAG 32 (119)
Q Consensus 13 ~~~~~~~~~I~~~~GG~~~G 32 (119)
.....++++|+.+.||-..+
T Consensus 11 adA~~RaRQIaAKig~~~~~ 30 (31)
T 2kxh_B 11 KDALQRARQIAAKIGGDAGT 30 (31)
T ss_dssp HHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHHhcCCCCC
Confidence 34577899999999986543
No 19
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=29.46 E-value=18 Score=24.78 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred hhhhhhhhhhhhhhhccCceeeeecc
Q psy7464 41 MLTYIIAYIRDFACDYYFIGDSFETS 66 (119)
Q Consensus 41 ~~RF~~PYLRd~l~~~G~~~DT~ETA 66 (119)
..+|--|-+|+.|.++|+-+|.+.|.
T Consensus 79 ~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 79 ELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp SCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 36787899999999999999999994
No 20
>4gb3_4 Coat protein 4; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 2x5i_D* 3iyp_D* 1cov_4* 1jew_4 1upn_D 1h8t_D* 1mqt_D* 1oop_D* 1d4m_4* 1ev1_4* 2c8i_D
Probab=29.44 E-value=16 Score=23.15 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q psy7464 104 PKKFSEPTTDAS 115 (119)
Q Consensus 104 ~~~~~~~~~~~~ 115 (119)
|.||++|-.|.-
T Consensus 49 PsKFT~Pv~D~l 60 (68)
T 4gb3_4 49 PGKFTEPVKDIM 60 (68)
T ss_dssp GGGTSCCBSSCC
T ss_pred hhHhcchHHHHH
Confidence 789999988863
No 21
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=28.64 E-value=54 Score=20.16 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=22.5
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCC
Q psy7464 2 ALLVLGDPEDVKNNEDKIYSIAKRYGG 28 (119)
Q Consensus 2 vlgfEG~~~~V~~~~~~~~~I~~~~GG 28 (119)
++-..|+++.|+..+..+.++++..+|
T Consensus 53 ~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 53 IITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 345678999999999999999988766
No 22
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=28.30 E-value=42 Score=21.46 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=20.7
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCccC
Q psy7464 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (119)
Q Consensus 1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~ 31 (119)
+++.+.|.-. ..+..+.++++++||.+.
T Consensus 19 ~~i~isg~~~---~~r~~l~~li~~~Gg~v~ 46 (107)
T 3l3e_A 19 VVVCVSKKLS---KKQSELNGIAASLGADYR 46 (107)
T ss_dssp CEEEECGGGG---GGHHHHHHHHHHTTCEEE
T ss_pred eEEEEeCCCh---HhHHHHHHHHHHcCCEEe
Confidence 3567777654 467888899999999653
No 23
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=27.84 E-value=1.1e+02 Score=23.78 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=33.6
Q ss_pred hhhhccCceeeeecc----ccccchHHHHHHHHHHHHHHHHhCCccee-EeeecccCC
Q psy7464 52 FACDYYFIGDSFETS----VPWDKTVLLCINVKKRLTRECTEGNVLMM-LEQLPFGWP 104 (119)
Q Consensus 52 ~l~~~G~~~DT~ETA----~~Ws~v~~l~~~V~~al~~al~~~g~~~~-~~~l~~~~~ 104 (119)
.+.+.|+ |.+|-. .+|..-........+.+++.+++.|+... ++--.|..|
T Consensus 41 ~aa~~G~--~~VEl~~~~l~p~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~f~~p 96 (393)
T 1xim_A 41 KLAEIGA--YGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVPMVTTNLFTHP 96 (393)
T ss_dssp HHHHHTC--SEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSSG
T ss_pred HHHHhCC--CEEEeecccCCCccccccccHHHHHHHHHHHHHhCCEEEEEecCCcCCc
Confidence 3566776 899988 67654222223456778888999999887 554445555
No 24
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=27.69 E-value=81 Score=23.42 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=39.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHHHHHHHHHHhC--CcceeEeeeccc
Q psy7464 36 GRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEG--NVLMMLEQLPFG 102 (119)
Q Consensus 36 g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~al~~~--g~~~~~~~l~~~ 102 (119)
|..++..+....-+-+.|.+.|+=+..-.||-+. ||+.|-=.....+.+. +.++.|-|+|+.
T Consensus 109 gp~~~~t~Lpv~~iv~~l~~~gipa~vS~dAG~y-----lCN~i~Y~sL~~~~~~~~~~~~gFIHVP~l 172 (216)
T 4gxh_A 109 GPAAYFSRLPIKTMVNALNTAGIPASVSQTAGTF-----VCNHVMYGLLHYLAQNTPSVRGGFIHVPYL 172 (216)
T ss_dssp CCSEEECCSCHHHHHHHHHHTTCCEEEESCCCSS-----HHHHHHHHHHHHHHHHCTTSEEEEEEECBC
T ss_pred CchheecCCCHHHHHHHHHHCCCCEEEeCCCccc-----HHHHHHHHHHHHHHHcCCCCeEEEEEcCCC
Confidence 3345555555555666788888888777777764 7777643333334443 345559999987
No 25
>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
Probab=26.75 E-value=36 Score=30.09 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCccCCCcch
Q psy7464 15 NEDKIYSIAKRYGGIPAGESNG 36 (119)
Q Consensus 15 ~~~~~~~I~~~~GG~~~G~~~g 36 (119)
...++..|.+.+.|+++|++.+
T Consensus 359 ~n~~Le~Lyk~s~GLVIGESHs 380 (746)
T 2ebf_X 359 INERIEKCMNTYRGVAFQNSSK 380 (746)
T ss_dssp HHHHHHHHHHTTSEEEEESCHH
T ss_pred HHHHHHHHHhcCCceEEeccch
Confidence 3567778889999999999877
No 26
>3sb1_A Hydrogenase expression protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HUPH, unkno function; HET: PGE; 1.67A {Thiobacillus denitrificans}
Probab=26.74 E-value=43 Score=24.27 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHHHHHHHHhCCccee-Eeeeccc
Q psy7464 70 DKTVLLCINVKKRLTRECTEGNVLMM-LEQLPFG 102 (119)
Q Consensus 70 s~v~~l~~~V~~al~~al~~~g~~~~-~~~l~~~ 102 (119)
-|...|..+|.+++.+-.......++ |+.||+.
T Consensus 44 ~nA~alL~EI~~al~~~~~g~~~~vIdLs~LPls 77 (160)
T 3sb1_A 44 GNALPLLREIAEHLHHLLETGEASTIDLSALPLT 77 (160)
T ss_dssp STTTHHHHHHHHHHHHHHHHCCCEEECGGGSCCC
T ss_pred hhHHHHHHHHHHHHHhccCCCCCeEEECCCCCCC
Confidence 58899999999999887766666677 9998874
No 27
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=26.69 E-value=50 Score=25.11 Aligned_cols=59 Identities=7% Similarity=-0.149 Sum_probs=30.0
Q ss_pred hhhhhhhhhhhccCceeeeeccccccchHHHHH-------HHHHHHHH---HHHhCCccee---EeeecccCCC
Q psy7464 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCI-------NVKKRLTR---ECTEGNVLMM---LEQLPFGWPK 105 (119)
Q Consensus 45 ~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~-------~V~~al~~---al~~~g~~~~---~~~l~~~~~~ 105 (119)
..++.++.+.++|.-+...+-+++ .+..+.+ ..++.+.+ .+.+.|..++ |||+|+..+.
T Consensus 124 ~s~~y~~~l~~~~~~~~V~~~~~~--~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iILGCTh~pll~~~ 195 (268)
T 3out_A 124 NSNAYALQIHKKNPNIEVYSNPCG--LFVSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKES 195 (268)
T ss_dssp HHTHHHHHHHHHCTTSEEEEEECT--THHHHHHTTCCSSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHH
T ss_pred ccHHHHHHHHHhCCCCEEecCCCh--HHHHHHHcCCcCCHHHHHHHHHHHHHHHhCCCCEEEECCCChHHHHHH
Confidence 345566666666654444433332 1111111 12233333 3445666665 9999998764
No 28
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=25.98 E-value=52 Score=21.64 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=28.0
Q ss_pred ChHHHHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhh
Q psy7464 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIA 47 (119)
Q Consensus 8 ~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~P 47 (119)
++++++...+++.+++.++||...-. +.|=..|+..|
T Consensus 57 ~ee~~~~~ve~~~~iI~~~gG~i~~v---e~WG~R~LAY~ 93 (96)
T 2kjw_A 57 DQSQLALEKEIIQRALENYGARVEKV---EELGLRRLAYP 93 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCC---EECCCCCCCCS
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEE---ecccccccccc
Confidence 46789999999999999999987543 35666565443
No 29
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=25.22 E-value=59 Score=18.49 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=18.1
Q ss_pred cccccc----chHHHHHHHHHHHHHHHHhC
Q psy7464 65 TSVPWD----KTVLLCINVKKRLTRECTEG 90 (119)
Q Consensus 65 TA~~Ws----~v~~l~~~V~~al~~al~~~ 90 (119)
++.+|+ +|..-|++|++||++-|.+.
T Consensus 6 s~~tr~~rkerIv~eCnavrqALQdLlseY 35 (40)
T 4e17_B 6 SSCTRDDRRERIVAECNAVRQALQDLLSEY 35 (40)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554 57889999999999988763
No 30
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=25.17 E-value=19 Score=20.68 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=12.7
Q ss_pred eccccccchHHHHHHH
Q psy7464 64 ETSVPWDKTVLLCINV 79 (119)
Q Consensus 64 ETA~~Ws~v~~l~~~V 79 (119)
.-.+||+.|..|.++.
T Consensus 3 ~l~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 3 DLTVPWDDIEALLKNN 18 (41)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHH
Confidence 3469999999998765
No 31
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=24.12 E-value=1.3e+02 Score=20.31 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccc--hHHHHHHHHHHHHH
Q psy7464 16 EDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTR 85 (119)
Q Consensus 16 ~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~--v~~l~~~V~~al~~ 85 (119)
...+.+++.++|-..+=..+|.. |....+++++...|+-....-.-.+|+| ++.....+++.+..
T Consensus 69 ~~~~~~~~~~~~~~~i~sDnG~e-----f~s~~~~~~~~~~gI~~~~s~p~~P~~nG~vEr~~~tlk~~l~~ 135 (183)
T 3av9_A 69 AYFLLKLAGRWPVKTVHTDNGSN-----FTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQ 135 (183)
T ss_dssp HHHHHHHHHHSCCCEEECSSHHH-----HHCHHHHHHHHHHTCEEECCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEecCchh-----cchHHHHHHHHHCCCEEeecCCCCCcchhHHHHHHHHHHHHHHH
Confidence 34455677777643333444444 3333457788888887776666777776 55666666655544
No 32
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=24.06 E-value=59 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.016 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhCCccee---EeeecccC
Q psy7464 74 LLCINVKKRLTRECTEGNVLMM---LEQLPFGW 103 (119)
Q Consensus 74 ~l~~~V~~al~~al~~~g~~~~---~~~l~~~~ 103 (119)
...+.+.+++.+.+.+.|..++ |||+|+.-
T Consensus 157 ~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~ 189 (245)
T 3qvl_A 157 LAQEKVRERCIRALKEDGSGAIVLGSGGMATLA 189 (245)
T ss_dssp HHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 5667777777777777777766 99999864
No 33
>1aym_4 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_4* 1d3e_4 1ncr_D* 1nd2_D* 1qju_4* 1qjx_4* 1qjy_4* 1nd3_D* 1fpn_4* 1v9u_4* 3dpr_D* 1r1a_4* 2hwd_4* 2hwe_4* 2hwf_4*
Probab=23.90 E-value=16 Score=23.12 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCc
Q psy7464 104 PKKFSEPTTDAS 115 (119)
Q Consensus 104 ~~~~~~~~~~~~ 115 (119)
|.||++|-.|.-
T Consensus 49 PsKFT~Pv~dv~ 60 (68)
T 1aym_4 49 PSKFTDPVKDVL 60 (68)
T ss_dssp ------------
T ss_pred chhhcchHHHHH
Confidence 689999988753
No 34
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=22.82 E-value=28 Score=24.94 Aligned_cols=45 Identities=4% Similarity=-0.188 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHHHHHHHHHHhCCccee
Q psy7464 39 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMM 95 (119)
Q Consensus 39 W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~al~~~g~~~~ 95 (119)
+...+|-.|-++..|.++|+-+|.+.|..- -+ .-+.|..+|.++.
T Consensus 97 G~~~~~l~p~~~~~L~~~GIgvE~M~T~aA----~r--------TyNiL~~EgRrVa 141 (150)
T 3cpk_A 97 GRRQHLLGPEQVRPLLAMGVGVEAMDTQAA----AR--------TYNILMAEGRRVV 141 (150)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHHH----HH--------HHHHHHHTTCCEE
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEeCHHHH----HH--------HHHHHHhCCCcEE
Confidence 455678789999999999999999998532 22 2344566676666
No 35
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=22.67 E-value=1.7e+02 Score=19.16 Aligned_cols=72 Identities=7% Similarity=-0.004 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHcCCc-cCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccc--hHHHHHHHHHHHHHHHHhC
Q psy7464 14 NNEDKIYSIAKRYGGI-PAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRECTEG 90 (119)
Q Consensus 14 ~~~~~~~~I~~~~GG~-~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~--v~~l~~~V~~al~~al~~~ 90 (119)
...+...++..++|-- .+=+.+|.. |....+++++..+|+-....--..+|+| ++.....+++.+..-+...
T Consensus 53 ~v~~~l~~~~~~~g~p~~i~sDnG~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~tlk~~~~~~~~~~ 127 (162)
T 1cxq_A 53 AAQHHWATAIAVLGRPKAIKTDNGSC-----FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGD 127 (162)
T ss_dssp HHHHHHHHHHHHHCCCSEEECCSCHH-----HHSHHHHHHHHHHTCEEECCCCC----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCeEEEeCCchh-----hhhHHHHHHHHHCCCeEeeCCCCCCccCCEEehHHHHHHHHHHHHcCcc
Confidence 3345556667777642 122333433 3334457888899998777777788988 7888888888777766654
No 36
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=22.52 E-value=1.9e+02 Score=22.08 Aligned_cols=81 Identities=9% Similarity=-0.013 Sum_probs=45.7
Q ss_pred HHhHHHHHHHHHHHcCCccCCCcchhhhhhhhh---hh------hhhhhhhhhccCce-----e-eeeccccccchHHHH
Q psy7464 12 VKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTY---II------AYIRDFACDYYFIG-----D-SFETSVPWDKTVLLC 76 (119)
Q Consensus 12 V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF---~~------PYLRd~l~~~G~~~-----D-T~ETA~~Ws~v~~l~ 76 (119)
..+-...++.+.+++||. +|+...-+|.-.|- .+ --|-+.+++.|.-- | ++|.-|+-+.+..+.
T Consensus 109 ~nRT~~~vR~~f~K~gG~-lg~~GsV~~~F~~kG~i~~~~~~~~d~~~e~aieaGAeDv~~~edg~~~v~t~p~~~~~V~ 187 (247)
T 4f3q_A 109 KNRTVAEVRHAFSKCDGN-LGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALEVGAEDVTTNDDGSIDVTTLPEDFEKIR 187 (247)
T ss_dssp HHHHHHHHHHHHHHTTCE-ECCTTSSGGGEEEEEEEEECTTCCHHHHHHHHHHHTCSEEEECTTSCEEEEECGGGHHHHH
T ss_pred HhHHHHHHHHHHHhcCce-ECCCCceeEEEeeeEEEEECCCCCHHHHHHHHHhCCCceeeecCCceEEEEECHHHHHHHH
Confidence 445567788999999995 45544445654332 11 23455567777421 2 455556666655544
Q ss_pred HHHHHHHHHHHHhCCccee---Eeeecc
Q psy7464 77 INVKKRLTRECTEGNVLMM---LEQLPF 101 (119)
Q Consensus 77 ~~V~~al~~al~~~g~~~~---~~~l~~ 101 (119)
++ |.+.|.... ++.+|-
T Consensus 188 ~a--------L~~~g~~~~~aei~~~P~ 207 (247)
T 4f3q_A 188 NA--------MKAADLNPSHAEVTVLAS 207 (247)
T ss_dssp HH--------HHHTTCCCSEEEEEEEES
T ss_pred HH--------HHHcCCCeeEEEEEEecC
Confidence 33 344455433 777765
No 37
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.52 E-value=91 Score=18.10 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCc
Q psy7464 72 TVLLCINVKKRLTRECTEGNV 92 (119)
Q Consensus 72 v~~l~~~V~~al~~al~~~g~ 92 (119)
+..+-+.|-+|++..|.+.|.
T Consensus 24 lqK~K~EIIeAi~~El~~~~~ 44 (45)
T 1use_A 24 LQKVKEEIIEAFVQELRKRGS 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 455666677777777777664
No 38
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=20.85 E-value=62 Score=23.58 Aligned_cols=36 Identities=11% Similarity=-0.104 Sum_probs=24.4
Q ss_pred eeeeeccccccchHHHHHHHHHHHHHHHHhCCccee-Eeee
Q psy7464 60 GDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMM-LEQL 99 (119)
Q Consensus 60 ~DT~ETA~~Ws~v~~l~~~V~~al~~al~~~g~~~~-~~~l 99 (119)
-|.||-.++.+....|++.+.++ .++.|+... +.|-
T Consensus 170 EdGfEI~v~~~~A~~lw~~Ll~a----~~~~G~~~~~~~~~ 206 (210)
T 2gag_C 170 EQAWRIMPRASFTEHTVHWLVDA----MSEFASEAVILEHH 206 (210)
T ss_dssp TTEEEEEEBGGGHHHHHHHHHHH----HHGGGC--------
T ss_pred CCEEEEEEEHHHHHHHHHHHHHH----HHHcCCeEEEeecc
Confidence 47899999999999999999765 566676666 6653
No 39
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=20.80 E-value=1.3e+02 Score=22.23 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=33.6
Q ss_pred hhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHHHHHHHHHHhCC--cceeEeeeccc
Q psy7464 38 RGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGN--VLMMLEQLPFG 102 (119)
Q Consensus 38 ~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~al~~~g--~~~~~~~l~~~ 102 (119)
.++..+....-+-..+.+.|+=+..-++|-+ -||+.+-=.....+.+.+ .++.|-|+|+.
T Consensus 111 ~~~~stLpv~~iv~~l~~~gipa~vS~dAG~-----yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~ 172 (215)
T 3giu_A 111 PAYFSNLPVKAMTQSIINQGLPGALSNSAGT-----FVCNHTLYHLGYLQDKHYPHLRFGFIHVPYI 172 (215)
T ss_dssp SEEECCSCHHHHHHHHHHTTCCBCCBSCCCS-----SHHHHHHHHHHHHHHHTCTTCEEEEEEECCC
T ss_pred cccccCCCHHHHHHHHHHcCCCEEEeCCCCc-----cccHHHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 3444444443344556666766655666655 366666433344444444 34459999986
No 40
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=20.59 E-value=1.7e+02 Score=19.03 Aligned_cols=67 Identities=10% Similarity=0.011 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccc--hHHHHHHHHHHHHHH
Q psy7464 15 NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRE 86 (119)
Q Consensus 15 ~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~--v~~l~~~V~~al~~a 86 (119)
....+.+++.++|-..+=+..|.. |...-+++++...|+-.-..-...||+| ++.....+++.+...
T Consensus 48 ~~~~l~~~~~~~~~~~i~sD~G~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~lk~~~~~~ 116 (163)
T 3l3u_A 48 TAYFLLKLAGRWPVKTVHTDNGSN-----FTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQV 116 (163)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCGG-----GGSHHHHHHHHHHTCEEEETCCCCCCSTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEeecChHh-----hhhHHHHHHHHHCCceeeeCCCCCcccccHHHHHHHHHHHHHHHh
Confidence 344445677778754443344443 3344457888899998777777788887 566666666655543
No 41
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=20.53 E-value=33 Score=28.10 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=35.6
Q ss_pred hhhhhhhhhhhhhhhccCceeeeeccc---cccchHHHHHHHHHHH---HHHHHhCCccee-EeeecccCC
Q psy7464 41 MLTYIIAYIRDFACDYYFIGDSFETSV---PWDKTVLLCINVKKRL---TRECTEGNVLMM-LEQLPFGWP 104 (119)
Q Consensus 41 ~~RF~~PYLRd~l~~~G~~~DT~ETA~---~Ws~v~~l~~~V~~al---~~al~~~g~~~~-~~~l~~~~~ 104 (119)
+.||.+||..- +-.-| .|.|=.++ +|.+.....+.++..+ -+.+++.|.+++ | |.|..+|
T Consensus 40 ~~~f~~~~w~~-~~~~g--~d~fg~~t~~~~~~~~~~~~~~~~~~~~~ale~~a~lG~~~VE~-~~~~~~p 106 (438)
T 1a0c_A 40 HLRFSIAYWHT-FTADG--TDQFGKATMQRPWNHYTDPMDIAKARVEAAFEFFDKINAPYFCF-HDRDIAP 106 (438)
T ss_dssp HHCEEEEHHHH-HTCCS--CBTTBCCCCCCGGGGCCSHHHHHHHHHHHHHHHHHHHTCSEEEE-EHHHHSC
T ss_pred hceEEEehhhh-cCCCC--CCCCCCCCCCCCcccccCHHHHHHhhHHHHHHHHHHcCCCEEEe-ccccccc
Confidence 34888898642 22222 35554455 8997555555555533 334677899999 6 6555444
No 42
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=20.50 E-value=79 Score=24.02 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=13.2
Q ss_pred HHhCCccee---EeeecccCC
Q psy7464 87 CTEGNVLMM---LEQLPFGWP 104 (119)
Q Consensus 87 l~~~g~~~~---~~~l~~~~~ 104 (119)
+.+.|..++ |||+|+..+
T Consensus 174 l~~~g~D~iVLGCTh~pll~~ 194 (269)
T 3ist_A 174 LKSTKIDTVILGCTHYPLLKP 194 (269)
T ss_dssp GGGSCCCEEEECSTTGGGGHH
T ss_pred HHhCCCCEEEECCCCHHHHHH
Confidence 445666665 999999865
No 43
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=20.48 E-value=1.7e+02 Score=18.42 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccc--hHHHHHHHHHHHHHHH
Q psy7464 15 NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTREC 87 (119)
Q Consensus 15 ~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~--v~~l~~~V~~al~~al 87 (119)
..+...++..++|-..+=+.+|.. |....+++++...|+-....-...+|+| ++.....+++.+...+
T Consensus 41 ~~~~l~~~~~~~gp~~i~sDnG~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~lk~~~~~~~ 110 (152)
T 3kks_A 41 VALCILQLIQRYTVLHLHSDNGPC-----FTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRLAAYQ 110 (152)
T ss_dssp HHHHHHHHHHHSCCSEEEECSCHH-----HHSHHHHHHHHHTTCEEEESSCSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCcEEecCCchH-----hhHHHHHHHHHHcCCeecccCCcCCCccchhHHHHHHHHHHHHHHh
Confidence 344455777888833333334433 4344457788889987776666777776 5666666666655443
No 44
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=20.15 E-value=1.1e+02 Score=22.62 Aligned_cols=57 Identities=7% Similarity=-0.196 Sum_probs=27.8
Q ss_pred hhhhhhhhhhhccCceeeeeccccccchHHHHH-------HHHHHHHHHHHh--CCccee---EeeecccCC
Q psy7464 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCI-------NVKKRLTRECTE--GNVLMM---LEQLPFGWP 104 (119)
Q Consensus 45 ~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~-------~V~~al~~al~~--~g~~~~---~~~l~~~~~ 104 (119)
..++.++.+..+| .......+++ .+..+.+ .+++.+.+.+.+ .|..++ |||+|+.-+
T Consensus 121 ~~~~y~~~l~~~g-~~~v~~~~~~--~lv~~ie~g~~~~~~~~~~l~~~~~~~~~~~d~iILGCTh~p~l~~ 189 (255)
T 2jfz_A 121 QSNAYDNALKQQG-YLNISHLATS--LFVPLIEESILEGELLETCMHYYFTPLEILPEVIILGCTHFPLIAQ 189 (255)
T ss_dssp HHTHHHHHHHHTT-CCCEEEEECT--THHHHHHTTCCSSHHHHHHHHHHHTTCCSCCSEEEEESTTGGGGHH
T ss_pred hChHHHHHHHHcC-CCEEEecChH--HHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCEEEEcCcChHHHHH
Confidence 3345666777777 3222222222 1222211 233444444433 455555 999999643
Done!