RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7464
         (119 letters)



>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 30.8 bits (69), Expect = 0.028
 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 7/70 (10%)

Query: 7   GDPEDVKNNEDKIYSIAKRYGGI-------PAGESNGRRGYMLTYIIAYIRDFACDYYFI 59
           G  E V  N   +  + K+ G                +    L   +  +++F    +  
Sbjct: 87  GTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRG 146

Query: 60  GDSFETSVPW 69
           G       P 
Sbjct: 147 GGGSMWFAPV 156


>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 76

 Score = 23.3 bits (50), Expect = 4.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 17 DKIYSIAKRYGGIPAGESNGRRGY 40
          D IY      GG   G  NGR G+
Sbjct: 33 DIIYVTRVEEGGWWEGTLNGRTGW 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,636
Number of extensions: 20529
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 5
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)