Query psy7466
Match_columns 338
No_of_seqs 475 out of 2435
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 19:03:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 99.9 3.6E-28 7.9E-33 203.4 2.1 137 138-302 127-265 (279)
2 KOG1074|consensus 99.9 5.7E-27 1.2E-31 220.7 3.1 61 250-312 879-939 (958)
3 KOG2462|consensus 99.9 1.9E-26 4.1E-31 193.2 5.1 134 108-270 125-263 (279)
4 KOG3608|consensus 99.9 1.9E-22 4E-27 173.4 8.2 186 113-309 177-381 (467)
5 KOG3608|consensus 99.8 2E-20 4.3E-25 160.9 3.3 188 110-310 131-351 (467)
6 KOG3623|consensus 99.8 3.4E-20 7.4E-25 172.5 3.1 123 110-246 207-331 (1007)
7 KOG1074|consensus 99.7 1.2E-18 2.6E-23 165.0 3.6 159 107-274 599-930 (958)
8 KOG3576|consensus 99.7 1.6E-17 3.4E-22 132.8 3.3 125 108-274 112-236 (267)
9 KOG3576|consensus 99.7 6.7E-18 1.5E-22 134.9 0.7 119 188-309 112-241 (267)
10 KOG3623|consensus 99.6 1.1E-15 2.5E-20 142.8 4.1 108 194-304 211-333 (1007)
11 PLN03086 PRLI-interacting fact 99.3 3.6E-12 7.8E-17 120.2 5.9 146 112-305 406-565 (567)
12 PLN03086 PRLI-interacting fact 99.2 9E-12 1.9E-16 117.6 5.3 118 114-274 434-564 (567)
13 PHA00733 hypothetical protein 99.1 5.5E-11 1.2E-15 92.0 4.9 83 190-274 37-123 (128)
14 KOG3993|consensus 99.1 1.6E-11 3.5E-16 108.9 -0.0 192 111-308 265-486 (500)
15 PHA00733 hypothetical protein 99.1 1.9E-10 4.1E-15 89.0 4.6 87 139-249 38-124 (128)
16 PHA02768 hypothetical protein; 98.8 2.6E-09 5.7E-14 68.2 1.9 43 251-297 6-48 (55)
17 PHA02768 hypothetical protein; 98.8 3.6E-09 7.8E-14 67.5 2.3 44 224-267 5-48 (55)
18 PF13465 zf-H2C2_2: Zinc-finge 98.5 9.1E-08 2E-12 52.1 2.4 26 128-153 1-26 (26)
19 KOG3993|consensus 98.5 3E-08 6.6E-13 88.4 0.4 155 112-275 294-483 (500)
20 PHA00732 hypothetical protein 98.4 2.5E-07 5.4E-12 65.0 3.0 20 194-213 2-21 (79)
21 PHA00732 hypothetical protein 98.3 3.3E-07 7.1E-12 64.4 2.7 43 251-300 2-44 (79)
22 PF05605 zf-Di19: Drought indu 98.3 2.1E-07 4.6E-12 60.7 1.1 52 250-304 2-53 (54)
23 PF13465 zf-H2C2_2: Zinc-finge 98.2 7.2E-07 1.6E-11 48.6 2.2 26 208-236 1-26 (26)
24 PHA00616 hypothetical protein 98.2 9.9E-07 2.1E-11 53.6 2.3 39 113-151 1-39 (44)
25 PHA00616 hypothetical protein 98.0 1.9E-06 4.1E-11 52.4 0.8 34 250-285 1-34 (44)
26 PF05605 zf-Di19: Drought indu 98.0 8.3E-06 1.8E-10 53.1 3.9 50 193-246 2-51 (54)
27 COG5189 SFP1 Putative transcri 97.9 3.5E-06 7.6E-11 72.7 1.2 55 248-302 347-420 (423)
28 PF12756 zf-C2H2_2: C2H2 type 97.7 1.6E-05 3.4E-10 59.0 2.2 72 195-273 1-73 (100)
29 PF00096 zf-C2H2: Zinc finger, 97.7 2.4E-05 5.3E-10 41.2 1.9 22 142-163 1-22 (23)
30 COG5189 SFP1 Putative transcri 97.7 2.9E-05 6.2E-10 67.2 2.7 49 222-270 347-418 (423)
31 PF00096 zf-C2H2: Zinc finger, 97.5 5.8E-05 1.3E-09 39.7 1.9 20 194-213 1-20 (23)
32 PF13894 zf-C2H2_4: C2H2-type 97.4 0.0001 2.2E-09 39.0 1.8 23 251-273 1-23 (24)
33 PF12756 zf-C2H2_2: C2H2 type 97.3 0.00017 3.6E-09 53.4 2.4 22 193-214 50-71 (100)
34 PF13894 zf-C2H2_4: C2H2-type 97.2 0.00027 5.8E-09 37.3 2.2 20 194-213 1-20 (24)
35 PF13912 zf-C2H2_6: C2H2-type 97.1 0.00029 6.4E-09 38.5 1.9 24 250-274 1-24 (27)
36 KOG1146|consensus 97.1 0.0003 6.6E-09 72.0 3.0 59 186-244 458-538 (1406)
37 PF13912 zf-C2H2_6: C2H2-type 97.0 0.00055 1.2E-08 37.4 2.1 24 193-217 1-24 (27)
38 COG5236 Uncharacterized conser 96.8 0.0024 5.1E-08 56.3 5.2 131 113-275 151-306 (493)
39 COG5236 Uncharacterized conser 96.7 0.0006 1.3E-08 59.9 0.7 138 141-310 151-311 (493)
40 KOG2231|consensus 96.6 0.0017 3.6E-08 63.1 3.5 101 195-307 117-239 (669)
41 KOG2482|consensus 96.6 0.0028 6.2E-08 55.7 4.5 111 193-303 144-357 (423)
42 smart00355 ZnF_C2H2 zinc finge 96.4 0.0023 5E-08 34.1 2.0 23 142-164 1-23 (26)
43 KOG1146|consensus 96.3 0.002 4.3E-08 66.3 2.1 112 195-308 438-617 (1406)
44 PF09237 GAGA: GAGA factor; I 96.3 0.0036 7.7E-08 39.1 2.4 35 107-141 18-52 (54)
45 KOG4173|consensus 96.2 0.0036 7.8E-08 51.1 2.6 92 111-219 77-172 (253)
46 KOG2231|consensus 96.1 0.0068 1.5E-07 59.0 4.7 161 113-305 99-302 (669)
47 smart00355 ZnF_C2H2 zinc finge 96.1 0.0032 7E-08 33.5 1.2 23 251-274 1-23 (26)
48 PF12874 zf-met: Zinc-finger o 95.9 0.0042 9.2E-08 33.1 1.2 21 142-162 1-21 (25)
49 PRK04860 hypothetical protein; 95.8 0.0048 1.1E-07 49.6 1.8 39 250-294 119-157 (160)
50 PF12874 zf-met: Zinc-finger o 95.7 0.0083 1.8E-07 31.9 1.8 20 194-213 1-20 (25)
51 PF13909 zf-H2C2_5: C2H2-type 95.7 0.0052 1.1E-07 32.4 1.0 23 251-274 1-23 (24)
52 KOG2785|consensus 95.6 0.0093 2E-07 53.6 2.9 158 142-303 4-243 (390)
53 PRK04860 hypothetical protein; 95.5 0.0058 1.3E-07 49.2 1.0 41 111-155 117-157 (160)
54 PF09237 GAGA: GAGA factor; I 95.4 0.022 4.7E-07 35.6 3.1 30 189-218 20-49 (54)
55 PF13909 zf-H2C2_5: C2H2-type 95.3 0.016 3.4E-07 30.5 2.0 20 194-214 1-20 (24)
56 KOG4173|consensus 95.2 0.0084 1.8E-07 49.0 1.2 77 192-274 78-170 (253)
57 PF12171 zf-C2H2_jaz: Zinc-fin 95.2 0.0087 1.9E-07 32.6 0.9 20 251-270 2-21 (27)
58 COG5048 FOG: Zn-finger [Genera 94.9 0.0065 1.4E-07 57.2 -0.3 49 113-161 289-343 (467)
59 TIGR00622 ssl1 transcription f 94.5 0.072 1.6E-06 39.7 4.4 86 191-287 13-110 (112)
60 COG5048 FOG: Zn-finger [Genera 94.4 0.025 5.4E-07 53.3 2.3 140 140-308 288-446 (467)
61 PF13913 zf-C2HC_2: zinc-finge 94.3 0.035 7.6E-07 29.6 1.8 19 143-162 4-22 (25)
62 PF12171 zf-C2H2_jaz: Zinc-fin 94.2 0.019 4.2E-07 31.2 0.7 20 194-213 2-21 (27)
63 KOG2482|consensus 94.2 0.12 2.5E-06 45.9 5.8 157 111-270 142-354 (423)
64 KOG2893|consensus 94.1 0.015 3.2E-07 48.8 0.2 49 223-274 10-58 (341)
65 KOG2785|consensus 94.0 0.16 3.4E-06 45.9 6.3 50 113-162 3-89 (390)
66 KOG2893|consensus 93.1 0.036 7.8E-07 46.5 0.8 50 252-307 12-61 (341)
67 PF13913 zf-C2HC_2: zinc-finge 92.8 0.089 1.9E-06 28.0 1.8 8 227-234 5-12 (25)
68 smart00451 ZnF_U1 U1-like zinc 92.5 0.092 2E-06 30.3 1.8 22 250-271 3-24 (35)
69 COG4049 Uncharacterized protei 92.0 0.068 1.5E-06 33.9 0.8 28 247-274 14-41 (65)
70 KOG4167|consensus 91.9 0.14 3E-06 50.0 3.0 28 111-138 790-817 (907)
71 smart00451 ZnF_U1 U1-like zinc 91.7 0.15 3.2E-06 29.4 2.0 21 193-213 3-23 (35)
72 cd00350 rubredoxin_like Rubred 90.7 0.15 3.3E-06 29.2 1.4 8 224-231 17-24 (33)
73 COG4049 Uncharacterized protei 90.0 0.19 4.2E-06 31.9 1.5 29 108-136 12-40 (65)
74 PF12013 DUF3505: Protein of u 88.6 0.69 1.5E-05 34.7 3.9 27 192-219 10-36 (109)
75 PF09986 DUF2225: Uncharacteri 88.4 0.093 2E-06 44.7 -1.1 16 223-238 4-19 (214)
76 PF09986 DUF2225: Uncharacteri 87.1 0.18 3.8E-06 42.9 -0.1 46 192-237 4-61 (214)
77 COG5151 SSL1 RNA polymerase II 86.0 0.43 9.4E-06 41.8 1.7 47 227-274 365-411 (421)
78 KOG2186|consensus 85.2 0.53 1.1E-05 40.2 1.7 47 112-161 2-48 (276)
79 TIGR02098 MJ0042_CXXC MJ0042 f 85.0 0.45 9.7E-06 28.1 0.9 12 252-263 4-15 (38)
80 PF09538 FYDLN_acid: Protein o 84.9 0.49 1.1E-05 35.4 1.3 35 250-297 9-43 (108)
81 COG2888 Predicted Zn-ribbon RN 84.6 0.95 2.1E-05 29.4 2.3 10 248-257 48-57 (61)
82 KOG2272|consensus 84.6 0.63 1.4E-05 39.6 1.9 133 141-293 99-234 (332)
83 PF09538 FYDLN_acid: Protein o 84.2 0.75 1.6E-05 34.4 2.0 32 223-263 8-39 (108)
84 cd00729 rubredoxin_SM Rubredox 83.9 0.66 1.4E-05 26.7 1.3 8 194-201 3-10 (34)
85 smart00531 TFIIE Transcription 83.8 0.77 1.7E-05 36.5 2.1 13 224-236 99-111 (147)
86 PF13717 zinc_ribbon_4: zinc-r 83.2 0.94 2E-05 26.5 1.7 8 196-203 5-12 (36)
87 PF12013 DUF3505: Protein of u 82.9 2.2 4.8E-05 31.9 4.2 25 250-274 80-108 (109)
88 PF02892 zf-BED: BED zinc fing 82.4 1.1 2.3E-05 27.5 1.9 27 248-274 14-44 (45)
89 KOG2186|consensus 81.2 1.1 2.3E-05 38.4 2.0 47 193-245 3-49 (276)
90 PF13719 zinc_ribbon_5: zinc-r 81.1 1.1 2.4E-05 26.3 1.5 32 226-260 4-35 (37)
91 PF10571 UPF0547: Uncharacteri 80.0 0.57 1.2E-05 25.2 0.0 10 143-152 16-25 (26)
92 smart00531 TFIIE Transcription 78.1 1.7 3.7E-05 34.6 2.2 39 189-234 95-133 (147)
93 COG1592 Rubrerythrin [Energy p 78.0 1.5 3.2E-05 35.5 1.8 12 276-287 145-156 (166)
94 PRK00464 nrdR transcriptional 77.9 0.59 1.3E-05 37.4 -0.4 18 280-297 28-45 (154)
95 TIGR02300 FYDLN_acid conserved 77.4 2 4.4E-05 32.7 2.3 34 251-297 10-43 (129)
96 TIGR00373 conserved hypothetic 77.2 1.6 3.5E-05 35.1 1.9 21 137-157 105-125 (158)
97 PRK09678 DNA-binding transcrip 77.0 0.69 1.5E-05 31.7 -0.3 20 278-297 25-46 (72)
98 COG1997 RPL43A Ribosomal prote 76.6 1.1 2.4E-05 31.6 0.7 11 250-260 53-63 (89)
99 TIGR00622 ssl1 transcription f 75.9 3.2 7E-05 31.1 3.0 106 114-257 2-110 (112)
100 PHA00626 hypothetical protein 75.4 1 2.2E-05 28.8 0.2 13 224-236 23-35 (59)
101 PF09845 DUF2072: Zn-ribbon co 75.2 4.7 0.0001 31.0 3.8 14 250-263 1-14 (131)
102 TIGR00373 conserved hypothetic 74.9 1.2 2.6E-05 35.9 0.6 37 108-153 104-140 (158)
103 TIGR02300 FYDLN_acid conserved 74.9 1.7 3.8E-05 33.1 1.4 35 224-267 9-43 (129)
104 PF09723 Zn-ribbon_8: Zinc rib 74.8 1.8 3.8E-05 26.3 1.2 12 251-262 6-17 (42)
105 PRK14890 putative Zn-ribbon RN 74.2 2.7 5.7E-05 27.4 1.9 9 194-202 26-34 (59)
106 PRK06266 transcription initiat 74.0 1.5 3.3E-05 36.1 1.0 31 223-260 116-146 (178)
107 smart00659 RPOLCX RNA polymera 73.8 2.6 5.7E-05 25.9 1.7 10 194-203 3-12 (44)
108 COG0068 HypF Hydrogenase matur 73.8 0.35 7.6E-06 47.5 -3.2 75 114-233 102-182 (750)
109 COG1198 PriA Primosomal protei 73.1 2.3 4.9E-05 42.9 2.1 11 113-123 435-445 (730)
110 COG5188 PRP9 Splicing factor 3 73.0 6 0.00013 35.6 4.4 20 142-161 239-258 (470)
111 KOG1280|consensus 72.5 2.7 5.8E-05 37.7 2.2 38 250-287 79-116 (381)
112 smart00614 ZnF_BED BED zinc fi 72.0 2.4 5.2E-05 26.7 1.4 25 250-274 18-47 (50)
113 PF14353 CpXC: CpXC protein 71.9 1.1 2.4E-05 34.6 -0.2 23 280-302 38-60 (128)
114 COG1592 Rubrerythrin [Energy p 71.5 2.5 5.4E-05 34.2 1.6 24 193-232 134-157 (166)
115 PRK00464 nrdR transcriptional 71.2 0.97 2.1E-05 36.1 -0.7 14 225-238 29-42 (154)
116 PRK06266 transcription initiat 70.9 2.6 5.6E-05 34.7 1.7 16 140-155 116-131 (178)
117 smart00834 CxxC_CXXC_SSSS Puta 70.0 1.3 2.7E-05 26.5 -0.3 10 194-203 6-15 (41)
118 TIGR02605 CxxC_CxxC_SSSS putat 68.2 1.5 3.3E-05 27.8 -0.2 11 194-204 6-16 (52)
119 smart00734 ZnF_Rad18 Rad18-lik 66.0 4.7 0.0001 21.6 1.5 19 142-161 2-20 (26)
120 KOG2807|consensus 65.9 8.4 0.00018 34.4 3.8 31 249-287 344-374 (378)
121 COG1996 RPC10 DNA-directed RNA 65.6 3.5 7.6E-05 25.9 1.1 10 194-203 7-16 (49)
122 COG0068 HypF Hydrogenase matur 65.6 1 2.2E-05 44.4 -2.0 46 115-161 125-171 (750)
123 PF12907 zf-met2: Zinc-binding 65.1 4.5 9.8E-05 24.2 1.4 32 251-283 2-36 (40)
124 PF03604 DNA_RNApol_7kD: DNA d 65.1 3.9 8.4E-05 23.2 1.1 6 226-231 19-24 (32)
125 KOG2807|consensus 64.2 5.8 0.00013 35.4 2.5 36 111-160 274-309 (378)
126 COG5151 SSL1 RNA polymerase II 64.1 2.7 5.8E-05 37.1 0.5 50 192-246 361-410 (421)
127 PF14353 CpXC: CpXC protein 63.9 3.3 7.2E-05 31.9 0.9 20 250-269 38-57 (128)
128 PF04959 ARS2: Arsenite-resist 63.9 4 8.8E-05 34.5 1.5 27 248-274 75-101 (214)
129 PF06524 NOA36: NOA36 protein; 61.3 8 0.00017 33.4 2.8 17 186-202 135-151 (314)
130 TIGR00595 priA primosomal prot 60.9 5.9 0.00013 38.5 2.2 10 192-201 239-248 (505)
131 PF00301 Rubredoxin: Rubredoxi 60.3 3.4 7.5E-05 25.7 0.3 14 194-207 2-15 (47)
132 PRK14873 primosome assembly pr 59.8 5.8 0.00013 39.9 2.0 19 14-32 256-274 (665)
133 PF15269 zf-C2H2_7: Zinc-finge 57.8 7.4 0.00016 23.7 1.4 22 225-246 21-42 (54)
134 COG4888 Uncharacterized Zn rib 57.6 2.1 4.5E-05 31.1 -1.1 38 249-292 21-58 (104)
135 KOG2071|consensus 57.1 9.8 0.00021 36.9 2.9 25 140-164 417-441 (579)
136 PF15269 zf-C2H2_7: Zinc-finge 56.1 7.7 0.00017 23.6 1.3 25 111-135 18-42 (54)
137 PF02176 zf-TRAF: TRAF-type zi 55.1 7.6 0.00016 25.2 1.4 17 239-255 25-43 (60)
138 KOG2593|consensus 54.5 11 0.00024 35.1 2.7 23 137-159 124-146 (436)
139 PTZ00255 60S ribosomal protein 54.3 5 0.00011 28.8 0.4 14 279-292 53-66 (90)
140 PF04959 ARS2: Arsenite-resist 53.9 9.7 0.00021 32.3 2.1 31 189-219 73-103 (214)
141 TIGR00280 L37a ribosomal prote 52.1 4.8 0.0001 28.9 0.0 14 279-292 52-65 (91)
142 KOG4124|consensus 51.3 2.8 6.1E-05 37.6 -1.5 51 110-161 175-232 (442)
143 KOG2593|consensus 51.2 8.5 0.00018 35.8 1.4 34 224-258 128-161 (436)
144 COG5188 PRP9 Splicing factor 3 50.9 11 0.00023 34.1 2.0 23 192-214 237-259 (470)
145 PF05290 Baculo_IE-1: Baculovi 50.5 18 0.00039 27.9 2.9 57 222-295 78-136 (140)
146 PRK05580 primosome assembly pr 50.4 11 0.00024 38.2 2.2 11 16-26 259-269 (679)
147 cd00730 rubredoxin Rubredoxin; 50.1 4.5 9.7E-05 25.6 -0.3 13 142-154 2-14 (50)
148 PF05443 ROS_MUCR: ROS/MUCR tr 49.0 11 0.00023 29.4 1.5 28 110-140 69-96 (132)
149 KOG4124|consensus 48.5 7.4 0.00016 35.0 0.6 57 249-305 348-423 (442)
150 PF08274 PhnA_Zn_Ribbon: PhnA 48.3 7.2 0.00016 21.7 0.3 25 115-150 4-28 (30)
151 PF04780 DUF629: Protein of un 48.0 11 0.00025 35.8 1.8 28 250-277 57-84 (466)
152 KOG4167|consensus 47.9 5.3 0.00012 39.5 -0.4 25 140-164 791-815 (907)
153 COG4530 Uncharacterized protei 46.7 9.7 0.00021 28.1 0.9 10 281-290 27-36 (129)
154 PF07754 DUF1610: Domain of un 45.8 10 0.00022 19.9 0.6 8 280-287 16-23 (24)
155 PRK03976 rpl37ae 50S ribosomal 45.7 6.7 0.00015 28.1 -0.0 14 279-292 53-66 (90)
156 PRK14714 DNA polymerase II lar 44.9 22 0.00047 38.0 3.3 11 250-260 692-702 (1337)
157 PF06524 NOA36: NOA36 protein; 44.8 16 0.00034 31.7 1.9 27 247-274 206-232 (314)
158 PRK03824 hypA hydrogenase nick 44.7 11 0.00023 29.6 0.9 13 250-262 70-82 (135)
159 COG3364 Zn-ribbon containing p 44.0 14 0.00029 27.0 1.3 12 251-262 3-14 (112)
160 PF01780 Ribosomal_L37ae: Ribo 43.1 8.7 0.00019 27.6 0.2 12 224-235 53-64 (90)
161 COG1198 PriA Primosomal protei 42.3 11 0.00025 38.1 0.9 14 276-289 471-484 (730)
162 PF05191 ADK_lid: Adenylate ki 41.4 14 0.00031 21.5 0.9 11 194-204 2-12 (36)
163 KOG1280|consensus 41.3 25 0.00054 31.8 2.8 42 190-232 76-117 (381)
164 PRK04023 DNA polymerase II lar 41.1 17 0.00036 37.9 1.8 9 142-150 627-635 (1121)
165 KOG0717|consensus 40.9 40 0.00086 31.9 4.1 21 114-134 461-481 (508)
166 PF09332 Mcm10: Mcm10 replicat 40.7 5.8 0.00013 36.2 -1.2 40 224-263 252-298 (344)
167 PRK04023 DNA polymerase II lar 40.7 29 0.00062 36.2 3.4 13 280-292 663-675 (1121)
168 TIGR01206 lysW lysine biosynth 39.8 13 0.00029 23.9 0.6 10 194-203 3-12 (54)
169 PF13451 zf-trcl: Probable zin 39.7 22 0.00047 22.4 1.6 13 223-235 3-15 (49)
170 KOG1842|consensus 38.8 16 0.00035 34.2 1.2 25 250-274 15-39 (505)
171 PF12760 Zn_Tnp_IS1595: Transp 38.8 22 0.00049 21.8 1.6 8 225-232 19-26 (46)
172 smart00440 ZnF_C2C2 C2C2 Zinc 38.6 6.3 0.00014 23.6 -0.9 10 281-290 29-38 (40)
173 PRK14873 primosome assembly pr 38.4 22 0.00047 35.9 2.2 47 195-259 385-431 (665)
174 COG1655 Uncharacterized protei 38.3 7.3 0.00016 33.0 -0.9 18 223-240 18-35 (267)
175 TIGR00595 priA primosomal prot 37.9 13 0.00029 36.1 0.6 48 195-259 215-262 (505)
176 KOG3408|consensus 37.4 21 0.00046 27.0 1.5 25 247-271 54-78 (129)
177 COG3677 Transposase and inacti 37.2 33 0.00071 26.6 2.6 14 279-292 52-65 (129)
178 PRK00432 30S ribosomal protein 37.1 18 0.0004 22.8 1.0 10 224-233 37-46 (50)
179 PF07282 OrfB_Zn_ribbon: Putat 36.5 20 0.00044 24.0 1.2 13 223-235 45-57 (69)
180 PF15135 UPF0515: Uncharacteri 36.2 34 0.00073 29.5 2.6 59 191-263 110-168 (278)
181 PF04780 DUF629: Protein of un 35.5 26 0.00055 33.5 2.1 28 192-219 56-83 (466)
182 PRK14892 putative transcriptio 35.2 14 0.0003 27.1 0.2 13 281-293 43-55 (99)
183 smart00661 RPOL9 RNA polymeras 34.6 30 0.00065 21.6 1.7 16 280-295 20-35 (52)
184 KOG2907|consensus 33.7 25 0.00054 26.2 1.3 11 251-261 103-113 (116)
185 PRK12380 hydrogenase nickel in 33.2 22 0.00047 26.8 1.0 7 194-200 71-77 (113)
186 PF08271 TF_Zn_Ribbon: TFIIB z 33.0 21 0.00045 21.6 0.7 9 280-288 19-27 (43)
187 COG4957 Predicted transcriptio 32.9 39 0.00084 26.2 2.3 28 111-141 74-101 (148)
188 TIGR00100 hypA hydrogenase nic 32.8 21 0.00045 27.1 0.8 6 226-231 72-77 (115)
189 KOG4377|consensus 32.8 31 0.00067 32.0 2.0 25 141-165 271-297 (480)
190 COG3357 Predicted transcriptio 32.2 26 0.00057 25.0 1.2 12 193-204 58-69 (97)
191 COG1656 Uncharacterized conser 31.9 44 0.00096 26.9 2.6 13 250-262 130-142 (165)
192 PF09332 Mcm10: Mcm10 replicat 31.5 7.1 0.00015 35.6 -2.2 15 279-293 284-298 (344)
193 PF09416 UPF1_Zn_bind: RNA hel 31.2 30 0.00064 27.6 1.5 53 138-202 11-69 (152)
194 PF14311 DUF4379: Domain of un 30.7 35 0.00076 21.8 1.6 13 194-206 29-41 (55)
195 KOG2636|consensus 30.5 18 0.00039 33.9 0.2 24 276-299 397-421 (497)
196 KOG0402|consensus 30.2 28 0.0006 24.4 1.0 13 247-259 33-45 (92)
197 PF03145 Sina: Seven in absent 29.4 55 0.0012 27.3 3.0 49 224-274 14-71 (198)
198 PF08790 zf-LYAR: LYAR-type C2 29.3 15 0.00032 20.1 -0.4 18 251-269 1-18 (28)
199 KOG3214|consensus 29.2 20 0.00043 26.1 0.2 15 279-293 46-60 (109)
200 PF01363 FYVE: FYVE zinc finge 28.5 34 0.00074 22.9 1.3 30 113-154 9-38 (69)
201 PF11931 DUF3449: Domain of un 27.5 20 0.00044 29.8 0.0 27 248-274 99-127 (196)
202 COG2331 Uncharacterized protei 27.4 29 0.00062 23.9 0.7 17 141-161 12-28 (82)
203 KOG1842|consensus 27.4 32 0.0007 32.2 1.3 29 192-220 14-42 (505)
204 PF07975 C1_4: TFIIH C1-like d 27.0 24 0.00051 22.4 0.2 25 249-274 20-44 (51)
205 PRK00564 hypA hydrogenase nick 27.0 29 0.00063 26.3 0.8 7 194-200 72-78 (117)
206 PF10263 SprT-like: SprT-like 26.9 22 0.00047 28.3 0.1 9 225-233 124-132 (157)
207 TIGR00143 hypF [NiFe] hydrogen 26.7 4.5 9.8E-05 40.9 -4.7 31 195-234 120-150 (711)
208 COG3091 SprT Zn-dependent meta 26.6 33 0.00072 27.2 1.0 11 224-235 117-127 (156)
209 COG1779 C4-type Zn-finger prot 26.4 14 0.0003 30.7 -1.2 10 282-291 45-54 (201)
210 smart00154 ZnF_AN1 AN1-like Zi 26.3 34 0.00074 20.2 0.8 15 280-294 12-26 (39)
211 PRK03681 hypA hydrogenase nick 26.2 35 0.00076 25.7 1.1 7 194-200 71-77 (114)
212 PF14446 Prok-RING_1: Prokaryo 26.1 46 0.00099 21.4 1.4 10 195-204 7-16 (54)
213 PF05129 Elf1: Transcription e 26.0 4.4 9.6E-05 28.6 -3.6 46 105-154 14-59 (81)
214 PF13453 zf-TFIIB: Transcripti 25.8 21 0.00045 21.3 -0.2 21 139-159 17-37 (41)
215 KOG0717|consensus 25.7 33 0.00072 32.4 1.0 24 251-274 293-317 (508)
216 PRK00420 hypothetical protein; 25.2 44 0.00096 25.1 1.4 8 225-232 41-48 (112)
217 cd00065 FYVE FYVE domain; Zinc 25.1 45 0.00098 21.2 1.3 8 253-260 5-12 (57)
218 COG1675 TFA1 Transcription ini 25.0 57 0.0012 26.8 2.2 15 137-151 109-123 (176)
219 PLN03239 histone acetyltransfe 25.0 54 0.0012 30.0 2.2 22 223-244 105-126 (351)
220 TIGR00686 phnA alkylphosphonat 24.9 39 0.00084 25.1 1.0 30 252-294 4-33 (109)
221 PRK03564 formate dehydrogenase 24.9 36 0.00078 30.7 1.1 78 192-293 186-265 (309)
222 PRK00762 hypA hydrogenase nick 24.7 37 0.00079 26.1 1.0 14 192-206 69-82 (124)
223 KOG3408|consensus 24.7 56 0.0012 24.8 1.8 28 108-135 52-79 (129)
224 COG1773 Rubredoxin [Energy pro 24.4 34 0.00073 22.1 0.6 38 250-288 3-44 (55)
225 COG5152 Uncharacterized conser 24.4 37 0.00081 28.1 1.0 19 108-126 191-209 (259)
226 PF07649 C1_3: C1-like domain; 23.9 43 0.00093 18.3 0.9 8 250-257 15-22 (30)
227 PF13824 zf-Mss51: Zinc-finger 23.7 40 0.00087 21.8 0.8 16 138-153 11-26 (55)
228 COG1998 RPS31 Ribosomal protei 23.6 45 0.00097 20.9 1.0 10 280-289 37-46 (51)
229 COG1571 Predicted DNA-binding 23.4 42 0.00092 31.5 1.2 15 280-294 367-381 (421)
230 PRK10220 hypothetical protein; 23.3 49 0.0011 24.6 1.3 30 252-294 5-34 (111)
231 PF01155 HypA: Hydrogenase exp 22.9 31 0.00066 26.0 0.2 10 194-203 71-80 (113)
232 PF07295 DUF1451: Protein of u 22.9 26 0.00056 27.8 -0.2 34 108-151 107-140 (146)
233 PF13878 zf-C2H2_3: zinc-finge 22.5 70 0.0015 19.1 1.7 25 193-218 13-39 (41)
234 smart00731 SprT SprT homologue 22.4 47 0.001 26.2 1.2 10 279-288 132-141 (146)
235 PF01428 zf-AN1: AN1-like Zinc 21.7 38 0.00083 20.4 0.4 15 192-206 12-26 (43)
236 smart00064 FYVE Protein presen 21.6 52 0.0011 21.9 1.2 7 227-233 13-19 (68)
237 TIGR00143 hypF [NiFe] hydrogen 21.2 12 0.00026 38.0 -3.0 12 192-203 139-150 (711)
238 PF04216 FdhE: Protein involve 21.1 29 0.00063 31.0 -0.3 14 191-204 236-249 (290)
239 KOG2636|consensus 21.0 63 0.0014 30.4 1.8 26 136-161 396-422 (497)
240 TIGR00515 accD acetyl-CoA carb 21.0 54 0.0012 29.2 1.4 34 224-264 26-59 (285)
241 COG4306 Uncharacterized protei 20.7 45 0.00097 25.4 0.7 13 250-262 68-80 (160)
242 KOG3002|consensus 20.3 80 0.0017 28.4 2.3 77 191-274 78-163 (299)
No 1
>KOG2462|consensus
Probab=99.94 E-value=3.6e-28 Score=203.43 Aligned_cols=137 Identities=25% Similarity=0.490 Sum_probs=125.0
Q ss_pred CCCccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccccCCCcceeccccccccCChHHHHHHHhhhc
Q psy7466 138 QGLEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRH 217 (338)
Q Consensus 138 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H 217 (338)
....|+|+.||+.+.+.++|-+|.++| +.-...+.+.|.+||+.|.+..+|.+|+ +.|
T Consensus 127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H---------------------~~~~s~ka~~C~~C~K~YvSmpALkMHi-rTH 184 (279)
T KOG2462|consen 127 KHPRYKCPECGKSYSTSSNLSRHKQTH---------------------RSLDSKKAFSCKYCGKVYVSMPALKMHI-RTH 184 (279)
T ss_pred cCCceeccccccccccccccchhhccc---------------------ccccccccccCCCCCceeeehHHHhhHh-hcc
Confidence 344689999999999999999998665 2223457799999999999999999999 999
Q ss_pred cCCCCCceecCcCcccccChhHHHHHHHc--CCCceecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCC
Q psy7466 218 IGICEEPYQCSQCSLCFDQGSLLKAHVLE--KHEVFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVT 295 (338)
Q Consensus 218 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~ 295 (338)
.- +++|.+||+.|...+.|+.|+++ |+|||.|+.|++.|..+++|+.| +.+| .+.++|+|..|+++|.....
T Consensus 185 ~l----~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH-mQTH-S~~K~~qC~~C~KsFsl~Sy 258 (279)
T KOG2462|consen 185 TL----PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH-MQTH-SDVKKHQCPRCGKSFALKSY 258 (279)
T ss_pred CC----CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHH-HHhh-cCCccccCcchhhHHHHHHH
Confidence 64 89999999999999999999998 99999999999999999999999 8999 99999999999999999999
Q ss_pred ccccccc
Q psy7466 296 PNRRSAR 302 (338)
Q Consensus 296 l~~H~~~ 302 (338)
|.+|...
T Consensus 259 LnKH~ES 265 (279)
T KOG2462|consen 259 LNKHSES 265 (279)
T ss_pred HHHhhhh
Confidence 9999764
No 2
>KOG1074|consensus
Probab=99.93 E-value=5.7e-27 Score=220.69 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=56.4
Q ss_pred ceecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCCCccc
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRSARNDSTKATVKT 312 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~ 312 (338)
...|..||+.|...++|..| ++.| +++++|.|.+|++.|.++..|+.|+.+|+....+...
T Consensus 879 ~h~C~vCgk~FsSSsALqiH-~rTH-tg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr 939 (958)
T KOG1074|consen 879 AHVCNVCGKQFSSSAALEIH-MRTH-TGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR 939 (958)
T ss_pred hhhhccchhcccchHHHHHh-hhcC-CCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence 37899999999999999999 9999 9999999999999999999999999988877766555
No 3
>KOG2462|consensus
Probab=99.93 E-value=1.9e-26 Score=193.18 Aligned_cols=134 Identities=25% Similarity=0.467 Sum_probs=124.3
Q ss_pred ccccccccchhhHhhhcChHHHHHHHHHhcC---CCccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhc
Q psy7466 108 KKDEILLMKALDEEMFKMDEENNKEMERISQ---GLEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLM 184 (338)
Q Consensus 108 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~ 184 (338)
......|.|..|++.+.+...|.+|..+|.. .+.|.|.+|++.|.+...|..|++
T Consensus 125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHir---------------------- 182 (279)
T KOG2462|consen 125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIR---------------------- 182 (279)
T ss_pred cccCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhh----------------------
Confidence 4456779999999999999999999999965 567999999999999999999984
Q ss_pred ccccCCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHc--CCCceecccccccccC
Q psy7466 185 KFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLE--KHEVFQCTQCEKYYRS 262 (338)
Q Consensus 185 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~C~~C~k~f~~ 262 (338)
+|+ .++.|.+||+.|...+.|+-|+ +.|+| ||||.|+.|+++|..+++|+.||++ +.++|+|..|+|+|..
T Consensus 183 --TH~--l~c~C~iCGKaFSRPWLLQGHi-RTHTG--EKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 183 --THT--LPCECGICGKAFSRPWLLQGHI-RTHTG--EKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred --ccC--CCcccccccccccchHHhhccc-ccccC--CCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence 444 5799999999999999999999 99999 9999999999999999999999999 7889999999999999
Q ss_pred hhhHHHHh
Q psy7466 263 QSTLDVHV 270 (338)
Q Consensus 263 ~~~L~~H~ 270 (338)
.+.|.+|.
T Consensus 256 ~SyLnKH~ 263 (279)
T KOG2462|consen 256 KSYLNKHS 263 (279)
T ss_pred HHHHHHhh
Confidence 99999994
No 4
>KOG3608|consensus
Probab=99.87 E-value=1.9e-22 Score=173.35 Aligned_cols=186 Identities=20% Similarity=0.318 Sum_probs=158.7
Q ss_pred cccc--hhhHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHHHHHh-------------hhhhhhhhhchhh
Q psy7466 113 LLMK--ALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHFFKC-------------LMKFTQKKKNLSK 177 (338)
Q Consensus 113 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h-------------~~~f~~~~~~l~~ 177 (338)
.+.| ..|-..|.++..|++|++.|++++...|+.||.-|.++..|..|++.. .+.|... ..|..
T Consensus 177 v~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTe-klL~~ 255 (467)
T KOG3608|consen 177 VTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATE-KLLKS 255 (467)
T ss_pred eeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHH-HHHHH
Confidence 3445 469999999999999999999999999999999999999999998543 3444444 55666
Q ss_pred hhhhhhcccccCCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcC-CCceeccc-
Q psy7466 178 HFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEK-HEVFQCTQ- 255 (338)
Q Consensus 178 h~~~c~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~-~~~~~C~~- 255 (338)
|+ ..|. .-|+|+.|+.+....++|..|++..|.. ++||+|..|++.|.+..+|.+|+.++ ...|.|..
T Consensus 256 Hv------~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~--dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~ 325 (467)
T KOG3608|consen 256 HV------VRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSK--DKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHP 325 (467)
T ss_pred HH------HHhh--hcccccccccCCCChHHHHHHHHhhhcc--CCCccccchhhhhccHHHHHHHHHhccccceecCCC
Confidence 65 4443 4599999999999999999999889998 99999999999999999999999985 45699998
Q ss_pred -ccccccChhhHHHHhhccC-CCCCCccccCCCCCCCCCCCCcccccccCCCCCCC
Q psy7466 256 -CEKYYRSQSTLDVHVSKKH-PAGTGKVKRDIKPNTNILTVTPNRRSARNDSTKAT 309 (338)
Q Consensus 256 -C~k~f~~~~~L~~H~~~~H-~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~ 309 (338)
|.++|++...|.+|++..| +..+.+|.|..|++.|.+..+|..|+.+.|+-.-+
T Consensus 326 ~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~P 381 (467)
T KOG3608|consen 326 DCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLP 381 (467)
T ss_pred CCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCC
Confidence 9999999999999988888 34456799999999999999999999988876543
No 5
>KOG3608|consensus
Probab=99.80 E-value=2e-20 Score=160.94 Aligned_cols=188 Identities=21% Similarity=0.295 Sum_probs=137.3
Q ss_pred ccccccc--hhhHhhhcChHHHHHHHHHhcC------------C-Ccccccc--ccccccChhhHHHHHHHh--------
Q psy7466 110 DEILLMK--ALDEEMFKMDEENNKEMERISQ------------G-LEYQCSV--CSQVFIEKKNLSKHFFKC-------- 164 (338)
Q Consensus 110 ~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~------------~-~~~~C~~--C~~~f~~~~~L~~H~~~h-------- 164 (338)
....|.| ..|+..|.+...|..|...|.- + ..+.|.. |.+.|.+++.|+.|.++|
T Consensus 131 ~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvAC 210 (467)
T KOG3608|consen 131 LGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVAC 210 (467)
T ss_pred chhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEec
Confidence 3445566 5699999999999999887742 1 1366766 999999999999999776
Q ss_pred ---hhhhhhhhhchhhhhhhhhcccccCCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHH
Q psy7466 165 ---LMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLK 241 (338)
Q Consensus 165 ---~~~f~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~ 241 (338)
+..|..+ ..|-.|+. ..+-....+|.|..|.+.|.+...|..|+ +.|.. -|+|+.|+.+....++|.
T Consensus 211 p~Cg~~F~~~-tkl~DH~r----Rqt~l~~n~fqC~~C~KrFaTeklL~~Hv-~rHvn----~ykCplCdmtc~~~ssL~ 280 (467)
T KOG3608|consen 211 PHCGELFRTK-TKLFDHLR----RQTELNTNSFQCAQCFKRFATEKLLKSHV-VRHVN----CYKCPLCDMTCSSASSLT 280 (467)
T ss_pred chHHHHhccc-cHHHHHHH----hhhhhcCCchHHHHHHHHHhHHHHHHHHH-HHhhh----cccccccccCCCChHHHH
Confidence 3344444 56666651 12233445788888888888888888887 77754 678888888888888888
Q ss_pred HHHHc---CCCceecccccccccChhhHHHHhhccCCCCCCccccCC--CCCCCCCCCCcccccccCCCCCCCc
Q psy7466 242 AHVLE---KHEVFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDI--KPNTNILTVTPNRRSARNDSTKATV 310 (338)
Q Consensus 242 ~H~~~---~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~ 310 (338)
.|++. ..+||+|+.|++.|.+.+.|.+| ...| . +..|.|.. |.++|.+...|++|.+.+|.++.+.
T Consensus 281 ~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH-~~~H-S-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~ 351 (467)
T KOG3608|consen 281 THIRYRHSKDKPFKCDECDTRCVRESDLAKH-VQVH-S-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPI 351 (467)
T ss_pred HHHHhhhccCCCccccchhhhhccHHHHHHH-HHhc-c-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCC
Confidence 88776 45778888888888888888888 4477 4 56678877 8888888888888887777555443
No 6
>KOG3623|consensus
Probab=99.79 E-value=3.4e-20 Score=172.55 Aligned_cols=123 Identities=21% Similarity=0.369 Sum_probs=99.2
Q ss_pred ccccccchhhHhhhcChHHHHHHHHHhc--CCCccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccc
Q psy7466 110 DEILLMKALDEEMFKMDEENNKEMERIS--QGLEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFT 187 (338)
Q Consensus 110 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~ 187 (338)
-...+.|++|.+.+.....|..|++.-+ .+..|.|..|..+|.....|.+||.+|...-... .++ ..
T Consensus 207 fsqlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa-----~sl------tq 275 (1007)
T KOG3623|consen 207 FSQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQA-----ISL------TQ 275 (1007)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCccc-----ccc------cc
Confidence 3456789999999999999999976533 3456999999999999999999998882222111 000 11
Q ss_pred cCCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHc
Q psy7466 188 QSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLE 246 (338)
Q Consensus 188 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 246 (338)
..+.+.|+|..||+.|..+..|+.|+ +.|.| ++||.|+.|+++|.....+..||..
T Consensus 276 sa~lRKFKCtECgKAFKfKHHLKEHl-RIHSG--EKPfeCpnCkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 276 SALLRKFKCTECGKAFKFKHHLKEHL-RIHSG--EKPFECPNCKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred hhhhccccccccchhhhhHHHHHhhh-eeecC--CCCcCCcccccccccCCcccccccc
Confidence 23456799999999999999999999 99999 9999999999999999999999743
No 7
>KOG1074|consensus
Probab=99.73 E-value=1.2e-18 Score=164.98 Aligned_cols=159 Identities=22% Similarity=0.372 Sum_probs=124.6
Q ss_pred cccccccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHHHHHhh------------------hhh
Q psy7466 107 KKKDEILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHFFKCL------------------MKF 168 (338)
Q Consensus 107 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~------------------~~f 168 (338)
..+...+.+|-+|-++....+.|+.|+++|+|++||+|.+||+.|.++.+|+.||-+|. ..|
T Consensus 599 ~~~~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kf 678 (958)
T KOG1074|consen 599 ENKRTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKF 678 (958)
T ss_pred ccccCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccc
Confidence 34456778999999999999999999999999999999999999999999999997771 112
Q ss_pred hhhhhchhhhhhhhhcccccCCC-------------cceeccccccccCChHHHHHHHhhhccCCCCCc-----------
Q psy7466 169 TQKKKNLSKHFFKCLMKFTQSGR-------------SSFKCAICFEYFSLLESLETHITRRHIGICEEP----------- 224 (338)
Q Consensus 169 ~~~~~~l~~h~~~c~~~~~h~~~-------------~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~----------- 224 (338)
... ..|..|+ +.|.+. -.-+|..|.+.|.....+..++ ..|.+....+
T Consensus 679 tn~-V~lpQhI------riH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~-se~~~~~s~~~~~~~~~t~t~ 750 (958)
T KOG1074|consen 679 TNA-VTLPQHI------RIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQI-SEQPSPESEPDEQMDERTETE 750 (958)
T ss_pred ccc-ccccceE------EeecCCCCCCCcccccccchhcccchhhhcccccccchhhh-hccCCcccCCccccccccccc
Confidence 211 2333333 555521 1246888888887777777776 5552110000
Q ss_pred --------------------------------------------------------------------------------
Q psy7466 225 -------------------------------------------------------------------------------- 224 (338)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (338)
T Consensus 751 ~~~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~ 830 (958)
T KOG1074|consen 751 ELDVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLW 830 (958)
T ss_pred ccccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhh
Confidence
Q ss_pred -------------------------------------------------eecCcCcccccChhHHHHHHHc--CCCceec
Q psy7466 225 -------------------------------------------------YQCSQCSLCFDQGSLLKAHVLE--KHEVFQC 253 (338)
Q Consensus 225 -------------------------------------------------~~C~~C~~~f~~~~~l~~H~~~--~~~~~~C 253 (338)
+.|..|++.|.+...|..|+++ +.|||.|
T Consensus 831 ~~~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C 910 (958)
T KOG1074|consen 831 NQETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFC 910 (958)
T ss_pred cccccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccc
Confidence 6799999999999999999999 7899999
Q ss_pred ccccccccChhhHHHHhhccC
Q psy7466 254 TQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 254 ~~C~k~f~~~~~L~~H~~~~H 274 (338)
.+|++.|..+.+|+.| +..|
T Consensus 911 ~fC~~aFttrgnLKvH-MgtH 930 (958)
T KOG1074|consen 911 HFCEEAFTTRGNLKVH-MGTH 930 (958)
T ss_pred hhhhhhhhhhhhhhhh-hccc
Confidence 9999999999999999 6688
No 8
>KOG3576|consensus
Probab=99.68 E-value=1.6e-17 Score=132.83 Aligned_cols=125 Identities=21% Similarity=0.391 Sum_probs=97.8
Q ss_pred ccccccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccc
Q psy7466 108 KKDEILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFT 187 (338)
Q Consensus 108 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~ 187 (338)
-.+...|.|.+|++.|.-...|.+||+-|...+.|-|..||+.|..-..|.+|+ ++
T Consensus 112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~------------------------rt 167 (267)
T KOG3576|consen 112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHT------------------------RT 167 (267)
T ss_pred CCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhh------------------------cc
Confidence 345778999999999999999999999999999999999999999999999998 88
Q ss_pred cCCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcCCCceecccccccccChhhHH
Q psy7466 188 QSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLD 267 (338)
Q Consensus 188 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~~L~ 267 (338)
|+|.+||+|..|++.|...-+|..|++..|.. ...| .++ ....+.|.|..||++-.....+.
T Consensus 168 htgvrpykc~~c~kaftqrcsleshl~kvhgv--~~~y-------------ayk---err~kl~vcedcg~t~~~~e~~~ 229 (267)
T KOG3576|consen 168 HTGVRPYKCSLCEKAFTQRCSLESHLKKVHGV--QHQY-------------AYK---ERRAKLYVCEDCGYTSERPEVYY 229 (267)
T ss_pred ccCccccchhhhhHHHHhhccHHHHHHHHcCc--hHHH-------------HHH---HhhhheeeecccCCCCCChhHHH
Confidence 99999999999999999999999999888854 1111 000 11244566666666665556666
Q ss_pred HHhhccC
Q psy7466 268 VHVSKKH 274 (338)
Q Consensus 268 ~H~~~~H 274 (338)
.|+...|
T Consensus 230 ~h~~~~h 236 (267)
T KOG3576|consen 230 LHLKLHH 236 (267)
T ss_pred HHHHhcC
Confidence 6644444
No 9
>KOG3576|consensus
Probab=99.68 E-value=6.7e-18 Score=134.90 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=108.4
Q ss_pred cCCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHc--CCCceecccccccccChhh
Q psy7466 188 QSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLE--KHEVFQCTQCEKYYRSQST 265 (338)
Q Consensus 188 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~C~~C~k~f~~~~~ 265 (338)
..+...|.|.+|++.|.....|.+|+ .-|.. .+.|-|..||+.|....+|++|+++ +.+||+|..|++.|+.+-+
T Consensus 112 ssd~d~ftCrvCgK~F~lQRmlnrh~-kch~~--vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcs 188 (267)
T KOG3576|consen 112 SSDQDSFTCRVCGKKFGLQRMLNRHL-KCHSD--VKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCS 188 (267)
T ss_pred CCCCCeeeeehhhhhhhHHHHHHHHh-hhccH--HHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhcc
Confidence 34566799999999999999999999 89988 7999999999999999999999998 7899999999999999999
Q ss_pred HHHHhhccCC---------CCCCccccCCCCCCCCCCCCcccccccCCCCCCC
Q psy7466 266 LDVHVSKKHP---------AGTGKVKRDIKPNTNILTVTPNRRSARNDSTKAT 309 (338)
Q Consensus 266 L~~H~~~~H~---------~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~ 309 (338)
|..|++++|. ...+-|.|..||++-.....+..|++.+|.....
T Consensus 189 leshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spa 241 (267)
T KOG3576|consen 189 LESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPA 241 (267)
T ss_pred HHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHH
Confidence 9999999994 1346799999999999999999999999887654
No 10
>KOG3623|consensus
Probab=99.57 E-value=1.1e-15 Score=142.78 Aligned_cols=108 Identities=23% Similarity=0.401 Sum_probs=98.6
Q ss_pred eeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcCC---------------Cceecccccc
Q psy7466 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKH---------------EVFQCTQCEK 258 (338)
Q Consensus 194 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~---------------~~~~C~~C~k 258 (338)
..|++|.+.+.....|+.|++..|... +..|.|..|.++|.++..|.+||.++. +.|+|..|||
T Consensus 211 ltcpycdrgykrltslkeHikyrhekn-e~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgK 289 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHEKN-EPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGK 289 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhC-CCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccch
Confidence 689999999999999999997778654 567999999999999999999997732 4799999999
Q ss_pred cccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcccccccCC
Q psy7466 259 YYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRSARND 304 (338)
Q Consensus 259 ~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h 304 (338)
.|..+..|+.| .++| .|++||.|+.|++.|....++..|+...-
T Consensus 290 AFKfKHHLKEH-lRIH-SGEKPfeCpnCkKRFSHSGSySSHmSSKK 333 (1007)
T KOG3623|consen 290 AFKFKHHLKEH-LRIH-SGEKPFECPNCKKRFSHSGSYSSHMSSKK 333 (1007)
T ss_pred hhhhHHHHHhh-heee-cCCCCcCCcccccccccCCcccccccccc
Confidence 99999999999 8999 99999999999999999999999986553
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.28 E-value=3.6e-12 Score=120.23 Aligned_cols=146 Identities=15% Similarity=0.259 Sum_probs=107.0
Q ss_pred ccccchhhHhhhcChHHHHHHHHHhcCCCcccccc--ccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccccC
Q psy7466 112 ILLMKALDEEMFKMDEENNKEMERISQGLEYQCSV--CSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQS 189 (338)
Q Consensus 112 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h~ 189 (338)
....|+.|..... ...|..|...... ..-.|+. |+..|. +..|..|
T Consensus 406 ~~V~C~NC~~~i~-l~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~-r~el~~H----------------------------- 453 (567)
T PLN03086 406 DTVECRNCKHYIP-SRSIALHEAYCSR-HNVVCPHDGCGIVLR-VEEAKNH----------------------------- 453 (567)
T ss_pred CeEECCCCCCccc-hhHHHHHHhhCCC-cceeCCcccccceee-ccccccC-----------------------------
Confidence 3446888887764 3456677655433 2346774 888773 3334444
Q ss_pred CCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHc--CCCceecccccccccC-----
Q psy7466 190 GRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLE--KHEVFQCTQCEKYYRS----- 262 (338)
Q Consensus 190 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~C~~C~k~f~~----- 262 (338)
+.|+.|++.|. ...|..|+ ..|. .++.|+ ||..+ .+..|..|+.+ ..+++.|.+|++.|..
T Consensus 454 ----~~C~~Cgk~f~-~s~LekH~-~~~H----kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~ 521 (567)
T PLN03086 454 ----VHCEKCGQAFQ-QGEMEKHM-KVFH----EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAM 521 (567)
T ss_pred ----ccCCCCCCccc-hHHHHHHH-HhcC----CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCcccc
Confidence 68999999996 67899998 5552 589999 99755 66899999876 6789999999999952
Q ss_pred -----hhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcccccccCCC
Q psy7466 263 -----QSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRSARNDS 305 (338)
Q Consensus 263 -----~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~ 305 (338)
...|..| ...+ +.+++.|..||+.|.. ..|..|+...|.
T Consensus 522 d~~d~~s~Lt~H-E~~C--G~rt~~C~~Cgk~Vrl-rdm~~H~~~~h~ 565 (567)
T PLN03086 522 DVRDRLRGMSEH-ESIC--GSRTAPCDSCGRSVML-KEMDIHQIAVHQ 565 (567)
T ss_pred chhhhhhhHHHH-HHhc--CCcceEccccCCeeee-hhHHHHHHHhhc
Confidence 4589999 6666 7889999999988854 467788776665
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.23 E-value=9e-12 Score=117.59 Aligned_cols=118 Identities=17% Similarity=0.291 Sum_probs=95.6
Q ss_pred ccchh--hHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccccCCC
Q psy7466 114 LMKAL--DEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGR 191 (338)
Q Consensus 114 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h~~~ 191 (338)
..|+. |+..|. ...+..| +.|+.|++.|. ...|..|+. .++
T Consensus 434 V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~~------------------------~~H-- 476 (567)
T PLN03086 434 VVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHMK------------------------VFH-- 476 (567)
T ss_pred eeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHHH------------------------hcC--
Confidence 35774 999884 4444444 58999999995 678999983 332
Q ss_pred cceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccC----------hhHHHHHHHc-CCCceecccccccc
Q psy7466 192 SSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQ----------GSLLKAHVLE-KHEVFQCTQCEKYY 260 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~----------~~~l~~H~~~-~~~~~~C~~C~k~f 260 (338)
.++.|+ ||+.+ ....|..|+ ..|.+ .+++.|..|++.|.. ...|..|..+ +.+++.|..||+.|
T Consensus 477 kpv~Cp-Cg~~~-~R~~L~~H~-~thCp--~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~V 551 (567)
T PLN03086 477 EPLQCP-CGVVL-EKEQMVQHQ-ASTCP--LRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSV 551 (567)
T ss_pred CCccCC-CCCCc-chhHHHhhh-hccCC--CCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCee
Confidence 679999 99765 678999998 88988 899999999999952 3579999888 88999999999999
Q ss_pred cChhhHHHHhhccC
Q psy7466 261 RSQSTLDVHVSKKH 274 (338)
Q Consensus 261 ~~~~~L~~H~~~~H 274 (338)
..+ .|..|+...|
T Consensus 552 rlr-dm~~H~~~~h 564 (567)
T PLN03086 552 MLK-EMDIHQIAVH 564 (567)
T ss_pred eeh-hHHHHHHHhh
Confidence 776 5899988888
No 13
>PHA00733 hypothetical protein
Probab=99.13 E-value=5.5e-11 Score=92.04 Aligned_cols=83 Identities=23% Similarity=0.353 Sum_probs=67.5
Q ss_pred CCcceeccccccccCChHHHHHH--Hh--hhccCCCCCceecCcCcccccChhHHHHHHHcCCCceecccccccccChhh
Q psy7466 190 GRSSFKCAICFEYFSLLESLETH--IT--RRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQST 265 (338)
Q Consensus 190 ~~~~~~C~~C~~~f~~~~~l~~H--~~--~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~~ 265 (338)
..+++.|.+|...|.....|..| +. ..+.+ .+||.|+.|++.|.+...|..|++.+..+|.|..|++.|.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~--~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~s 114 (128)
T PHA00733 37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKA--VSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDS 114 (128)
T ss_pred hhhhHHHHHHhhhccChhhhcchHHHHhhcccCC--CCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHH
Confidence 34778999999999888777776 21 12223 67899999999999999999998876678999999999999999
Q ss_pred HHHHhhccC
Q psy7466 266 LDVHVSKKH 274 (338)
Q Consensus 266 L~~H~~~~H 274 (338)
|..|+...|
T Consensus 115 L~~H~~~~h 123 (128)
T PHA00733 115 TLDHVCKKH 123 (128)
T ss_pred HHHHHHHhc
Confidence 999988888
No 14
>KOG3993|consensus
Probab=99.09 E-value=1.6e-11 Score=108.88 Aligned_cols=192 Identities=14% Similarity=0.000 Sum_probs=123.1
Q ss_pred cccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHHHHHhhhhhh------hh------hhchhhh
Q psy7466 111 EILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHFFKCLMKFT------QK------KKNLSKH 178 (338)
Q Consensus 111 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~------~~------~~~l~~h 178 (338)
-.-|+|.+|...|.....|..|.-----...|.|+.|++.|.--.+|..|.++|.-.-. .. ...+...
T Consensus 265 iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e 344 (500)
T KOG3993|consen 265 IGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE 344 (500)
T ss_pred HHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence 34589999999999999999995433333469999999999999999999999911000 00 0000000
Q ss_pred hhhhhcccccCCCcceeccccccccCChHHHHHHHhhhccCCC-CC--------------ceecCcCcccccChhHHHHH
Q psy7466 179 FFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGIC-EE--------------PYQCSQCSLCFDQGSLLKAH 243 (338)
Q Consensus 179 ~~~c~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~-~~--------------~~~C~~C~~~f~~~~~l~~H 243 (338)
. ...........|.|.+|++.|.....|+.|+ ..|.... -+ -+-|..|+-.+.....--.|
T Consensus 345 a---~rsg~dss~gi~~C~~C~KkFrRqAYLrKHq-lthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~ 420 (500)
T KOG3993|consen 345 A---ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQ-LTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDE 420 (500)
T ss_pred c---cccCCcccCceeecHHhhhhhHHHHHHHHhH-HhhhccccchhcccCcchhhcccccccccccccccccccccccc
Confidence 0 0001112345799999999999999999998 5553210 01 13344454444433322222
Q ss_pred HHc---CCCceecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCC
Q psy7466 244 VLE---KHEVFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRSARNDSTKA 308 (338)
Q Consensus 244 ~~~---~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~ 308 (338)
... ......|++||-.+.++..--.|.+..+ ....|.|.+|.-+|.+...|.+|+..+|....
T Consensus 421 vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~--~~q~f~~ky~~atfyss~~ltrhin~~Hpse~ 486 (500)
T KOG3993|consen 421 VLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGI--AEQGFTCKYCPATFYSSPGLTRHINKCHPSEL 486 (500)
T ss_pred eeeeeccccccCCCCCCCCcccCCCCCccccccc--hhhccccccchHhhhcCcchHhHhhhcChHHh
Confidence 111 1123457888877777765555532233 45668999999999999999999998887654
No 15
>PHA00733 hypothetical protein
Probab=99.05 E-value=1.9e-10 Score=89.03 Aligned_cols=87 Identities=25% Similarity=0.360 Sum_probs=64.5
Q ss_pred CCccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccccCCCcceeccccccccCChHHHHHHHhhhcc
Q psy7466 139 GLEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHI 218 (338)
Q Consensus 139 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~ 218 (338)
.+++.|.+|...|.....|..| ..|..|+ .+.+..||.|+.||+.|.+...|..|+ ..|.
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~------------~~l~~~~-------~~~~~kPy~C~~Cgk~Fss~s~L~~H~-r~h~ 97 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDES------------SYLYKLL-------TSKAVSPYVCPLCLMPFSSSVSLKQHI-RYTE 97 (128)
T ss_pred hhhHHHHHHhhhccChhhhcch------------HHHHhhc-------ccCCCCCccCCCCCCcCCCHHHHHHHH-hcCC
Confidence 4567888888888887777776 2233332 333477888999999999888888888 5552
Q ss_pred CCCCCceecCcCcccccChhHHHHHHHcCCC
Q psy7466 219 GICEEPYQCSQCSLCFDQGSLLKAHVLEKHE 249 (338)
Q Consensus 219 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ 249 (338)
.+|.|..|++.|.....|..|+..++.
T Consensus 98 ----~~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 98 ----HSKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ----cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence 468899999999998888888877543
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.78 E-value=2.6e-09 Score=68.17 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=26.1
Q ss_pred eecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcc
Q psy7466 251 FQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPN 297 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~ 297 (338)
|.|+.||+.|+..++|..| ++.| . ++|+|..|++.|...+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H-~r~H-~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITH-LRKH-N--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHH-HHhc-C--CcccCCcccceecccceeE
Confidence 5666666666666666666 5556 3 4566666666666555543
No 17
>PHA02768 hypothetical protein; Provisional
Probab=98.78 E-value=3.6e-09 Score=67.54 Aligned_cols=44 Identities=11% Similarity=0.338 Sum_probs=41.1
Q ss_pred ceecCcCcccccChhHHHHHHHcCCCceecccccccccChhhHH
Q psy7466 224 PYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLD 267 (338)
Q Consensus 224 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~~L~ 267 (338)
.|.|+.||+.|.....|..|++++.++|+|..|++.|...+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcCCcccCCcccceecccceeE
Confidence 58999999999999999999999889999999999999887764
No 18
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.49 E-value=9.1e-08 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCccccccccccccC
Q psy7466 128 ENNKEMERISQGLEYQCSVCSQVFIE 153 (338)
Q Consensus 128 ~l~~H~~~h~~~~~~~C~~C~~~f~~ 153 (338)
+|..||+.|++++||.|+.|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 48999999999999999999999964
No 19
>KOG3993|consensus
Probab=98.48 E-value=3e-08 Score=88.41 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=103.4
Q ss_pred ccccchhhHhhhcChHHHHHHHHHhcC---------------------------------CCccccccccccccChhhHH
Q psy7466 112 ILLMKALDEEMFKMDEENNKEMERISQ---------------------------------GLEYQCSVCSQVFIEKKNLS 158 (338)
Q Consensus 112 ~~~~C~~C~~~f~~~~~l~~H~~~h~~---------------------------------~~~~~C~~C~~~f~~~~~L~ 158 (338)
.-|.|+.|+++|+...+|..|.+-|.. ...|.|.+|+++|.....|+
T Consensus 294 vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLr 373 (500)
T KOG3993|consen 294 VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLR 373 (500)
T ss_pred eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHH
Confidence 458999999999999999999998842 11389999999999999999
Q ss_pred HHHHHhhhhhhhhhhchhhhhhhhhcccccCCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChh
Q psy7466 159 KHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGS 238 (338)
Q Consensus 159 ~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~ 238 (338)
.|..+|...-..+...+..- ........+-|..|+-.+.....-..+. ..+.+. .....|++|+..+.++.
T Consensus 374 KHqlthq~~~~~k~~a~~f~-------~s~~~~l~~~~~~~a~h~~a~~~~g~~v-l~~a~s-ael~~pp~~~~ppsss~ 444 (500)
T KOG3993|consen 374 KHQLTHQRAPLAKEKAPKFL-------LSRVIPLMHFNQAVATHSSASDSHGDEV-LYVAGS-AELELPPYDGSPPSSSG 444 (500)
T ss_pred HhHHhhhccccchhcccCcc-------hhhcccccccccccccccccccccccce-eeeecc-ccccCCCCCCCCcccCC
Confidence 99877743322220000000 0001112245666665555444433343 333332 23346788888887776
Q ss_pred HHHHHHHc--CCCceecccccccccChhhHHHHhhccCC
Q psy7466 239 LLKAHVLE--KHEVFQCTQCEKYYRSQSTLDVHVSKKHP 275 (338)
Q Consensus 239 ~l~~H~~~--~~~~~~C~~C~k~f~~~~~L~~H~~~~H~ 275 (338)
.--.|.+. ....|.|.+|.-.|.+..+|.+|+.+.|+
T Consensus 445 ~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp 483 (500)
T KOG3993|consen 445 SSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP 483 (500)
T ss_pred CCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence 55555433 45679999999999999999999999994
No 20
>PHA00732 hypothetical protein
Probab=98.38 E-value=2.5e-07 Score=64.95 Aligned_cols=20 Identities=40% Similarity=0.560 Sum_probs=9.8
Q ss_pred eeccccccccCChHHHHHHH
Q psy7466 194 FKCAICFEYFSLLESLETHI 213 (338)
Q Consensus 194 ~~C~~C~~~f~~~~~l~~H~ 213 (338)
|.|..||+.|.+...|..|+
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~ 21 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHA 21 (79)
T ss_pred ccCCCCCCccCCHHHHHHHh
Confidence 44444444444444444444
No 21
>PHA00732 hypothetical protein
Probab=98.34 E-value=3.3e-07 Score=64.38 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=21.1
Q ss_pred eecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCccccc
Q psy7466 251 FQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRS 300 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~~H~ 300 (338)
|.|..||+.|.+..+|..|++..| . ++.|+.|++.|. .|..|.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~~H-~---~~~C~~CgKsF~---~l~~H~ 44 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARRNH-T---LTKCPVCNKSYR---RLNQHF 44 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhccc-C---CCccCCCCCEeC---Chhhhh
Confidence 455555555555555555522234 2 234555555554 344444
No 22
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.30 E-value=2.1e-07 Score=60.69 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=34.6
Q ss_pred ceecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcccccccCC
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRSARND 304 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h 304 (338)
.|.|++|++ ..+...|..|+...|....+.+.|++|...+. ..|..|+...|
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 467777777 44556777777777744456677777777544 36777766555
No 23
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.25 E-value=7.2e-07 Score=48.56 Aligned_cols=26 Identities=42% Similarity=1.026 Sum_probs=20.4
Q ss_pred HHHHHHhhhccCCCCCceecCcCcccccC
Q psy7466 208 SLETHITRRHIGICEEPYQCSQCSLCFDQ 236 (338)
Q Consensus 208 ~l~~H~~~~H~~~~~~~~~C~~C~~~f~~ 236 (338)
+|..|+ +.|.+ ++||.|+.|++.|.+
T Consensus 1 ~l~~H~-~~H~~--~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHM-RTHTG--EKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHH-HHHSS--SSSEEESSSSEEESS
T ss_pred CHHHHh-hhcCC--CCCCCCCCCcCeeCc
Confidence 477888 67888 888888888888763
No 24
>PHA00616 hypothetical protein
Probab=98.20 E-value=9.9e-07 Score=53.62 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=34.5
Q ss_pred cccchhhHhhhcChHHHHHHHHHhcCCCccccccccccc
Q psy7466 113 LLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVF 151 (338)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 151 (338)
+|+|+.||+.|...+.|..|++.|++..++.|+.--..|
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f 39 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF 39 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence 689999999999999999999999999999998654443
No 25
>PHA00616 hypothetical protein
Probab=98.00 E-value=1.9e-06 Score=52.39 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=26.1
Q ss_pred ceecccccccccChhhHHHHhhccCCCCCCccccCC
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDI 285 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~ 285 (338)
||+|+.||+.|...+.|..|+ +.| .+.+++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~-r~~-hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHL-LSV-HKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHH-HHh-cCCCccceeE
Confidence 588888888888888888885 444 4677777764
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.00 E-value=8.3e-06 Score=53.11 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=32.9
Q ss_pred ceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHc
Q psy7466 193 SFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLE 246 (338)
Q Consensus 193 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 246 (338)
.|.|++|++ ..+...|..|....|... .+.+.|++|...+. ..|..|+..
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~-~~~v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSE-SKNVVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCC-CCCccCCCchhhhh--hHHHHHHHH
Confidence 377888888 455677888876677663 34677777776544 366666654
No 27
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.91 E-value=3.5e-06 Score=72.72 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCceeccc--ccccccChhhHHHHhhccCC-----------------CCCCccccCCCCCCCCCCCCccccccc
Q psy7466 248 HEVFQCTQ--CEKYYRSQSTLDVHVSKKHP-----------------AGTGKVKRDIKPNTNILTVTPNRRSAR 302 (338)
Q Consensus 248 ~~~~~C~~--C~k~f~~~~~L~~H~~~~H~-----------------~~~~~~~C~~C~~~f~~~~~l~~H~~~ 302 (338)
++||+|++ |.|.|.+...|+.|+.--|- ...+||.|+.|++.|.....|+.|+..
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H 420 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH 420 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence 35555554 55555555555555433330 234677777777777777777777643
No 28
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.75 E-value=1.6e-05 Score=58.98 Aligned_cols=72 Identities=28% Similarity=0.491 Sum_probs=20.9
Q ss_pred eccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHc-CCCceecccccccccChhhHHHHhhcc
Q psy7466 195 KCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLE-KHEVFQCTQCEKYYRSQSTLDVHVSKK 273 (338)
Q Consensus 195 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~C~~C~k~f~~~~~L~~H~~~~ 273 (338)
+|.+|+..|.+...|..|+...|.. ..+ ....+.....+..++.. ....+.|..|++.|.+...|..|+...
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~--~~~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGF--DIP-----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Ccccccccccccccccccccccccc--ccc-----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 5899999999999999999777754 222 11222244444445444 334699999999999999999997654
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.70 E-value=2.4e-05 Score=41.15 Aligned_cols=22 Identities=36% Similarity=0.955 Sum_probs=14.5
Q ss_pred cccccccccccChhhHHHHHHH
Q psy7466 142 YQCSVCSQVFIEKKNLSKHFFK 163 (338)
Q Consensus 142 ~~C~~C~~~f~~~~~L~~H~~~ 163 (338)
|.|+.|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 4666677777777777666643
No 30
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.66 E-value=2.9e-05 Score=67.23 Aligned_cols=49 Identities=31% Similarity=0.731 Sum_probs=45.3
Q ss_pred CCceecCc--CcccccChhHHHHHHHcCC---------------------CceecccccccccChhhHHHHh
Q psy7466 222 EEPYQCSQ--CSLCFDQGSLLKAHVLEKH---------------------EVFQCTQCEKYYRSQSTLDVHV 270 (338)
Q Consensus 222 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~---------------------~~~~C~~C~k~f~~~~~L~~H~ 270 (338)
++||+|++ |.+.+.....|+.|+..|+ +||.|++|+|.|.+...|+.|+
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 59999988 9999999999999988755 6999999999999999999993
No 31
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.53 E-value=5.8e-05 Score=39.66 Aligned_cols=20 Identities=40% Similarity=0.821 Sum_probs=13.6
Q ss_pred eeccccccccCChHHHHHHH
Q psy7466 194 FKCAICFEYFSLLESLETHI 213 (338)
Q Consensus 194 ~~C~~C~~~f~~~~~l~~H~ 213 (338)
|.|+.|++.|.+...|..|+
T Consensus 1 y~C~~C~~~f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEEESSHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHH
Confidence 56666777777666666666
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.40 E-value=0.0001 Score=38.98 Aligned_cols=23 Identities=43% Similarity=0.830 Sum_probs=13.3
Q ss_pred eecccccccccChhhHHHHhhcc
Q psy7466 251 FQCTQCEKYYRSQSTLDVHVSKK 273 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H~~~~ 273 (338)
|.|++|++.|.+...|..|+...
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 56666666776666666664433
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.28 E-value=0.00017 Score=53.39 Aligned_cols=22 Identities=36% Similarity=0.785 Sum_probs=15.3
Q ss_pred ceeccccccccCChHHHHHHHh
Q psy7466 193 SFKCAICFEYFSLLESLETHIT 214 (338)
Q Consensus 193 ~~~C~~C~~~f~~~~~l~~H~~ 214 (338)
.+.|.+|++.|.+...|..||+
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~ 71 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMR 71 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHH
T ss_pred CCCCCccCCCCcCHHHHHHHHc
Confidence 4777777777777777777773
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.22 E-value=0.00027 Score=37.27 Aligned_cols=20 Identities=35% Similarity=0.763 Sum_probs=12.0
Q ss_pred eeccccccccCChHHHHHHH
Q psy7466 194 FKCAICFEYFSLLESLETHI 213 (338)
Q Consensus 194 ~~C~~C~~~f~~~~~l~~H~ 213 (338)
|.|++|++.|.+...|..|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHH
Confidence 45666666666666666666
No 35
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.14 E-value=0.00029 Score=38.53 Aligned_cols=24 Identities=38% Similarity=0.793 Sum_probs=19.6
Q ss_pred ceecccccccccChhhHHHHhhccC
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
+|.|..|++.|.+...|..| ++.|
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H-~~~h 24 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREH-KRSH 24 (27)
T ss_dssp SEEETTTTEEESSHHHHHHH-HCTT
T ss_pred CCCCCccCCccCChhHHHHH-hHHh
Confidence 57888888888888888888 5555
No 36
>KOG1146|consensus
Probab=97.12 E-value=0.0003 Score=71.97 Aligned_cols=59 Identities=24% Similarity=0.459 Sum_probs=41.3
Q ss_pred cccCCCcceeccccccccCChHHHHHHHhhhccCC----------------------CCCceecCcCcccccChhHHHHH
Q psy7466 186 FTQSGRSSFKCAICFEYFSLLESLETHITRRHIGI----------------------CEEPYQCSQCSLCFDQGSLLKAH 243 (338)
Q Consensus 186 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~----------------------~~~~~~C~~C~~~f~~~~~l~~H 243 (338)
..+.-.+.|+|+.|+..|.....|..||+..|... +.++|.|..|..++..+..|..|
T Consensus 458 ~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsih 537 (1406)
T KOG1146|consen 458 VLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIH 537 (1406)
T ss_pred eeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHH
Confidence 45555688999999999999999999997766431 12345555555555555555555
Q ss_pred H
Q psy7466 244 V 244 (338)
Q Consensus 244 ~ 244 (338)
+
T Consensus 538 l 538 (1406)
T KOG1146|consen 538 L 538 (1406)
T ss_pred H
Confidence 4
No 37
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.00 E-value=0.00055 Score=37.40 Aligned_cols=24 Identities=42% Similarity=0.747 Sum_probs=17.7
Q ss_pred ceeccccccccCChHHHHHHHhhhc
Q psy7466 193 SFKCAICFEYFSLLESLETHITRRH 217 (338)
Q Consensus 193 ~~~C~~C~~~f~~~~~l~~H~~~~H 217 (338)
+|.|..|++.|.+...|..|+ +.|
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~-~~h 24 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHK-RSH 24 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHH-CTT
T ss_pred CCCCCccCCccCChhHHHHHh-HHh
Confidence 477777887787777777777 544
No 38
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.78 E-value=0.0024 Score=56.29 Aligned_cols=131 Identities=21% Similarity=0.247 Sum_probs=87.6
Q ss_pred cccchh--hHhhhcChHHHHHHHHHhcCCCcccccccc---ccccC------hhhHHHHHHHhhhhhhhhhhchhhhhhh
Q psy7466 113 LLMKAL--DEEMFKMDEENNKEMERISQGLEYQCSVCS---QVFIE------KKNLSKHFFKCLMKFTQKKKNLSKHFFK 181 (338)
Q Consensus 113 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---~~f~~------~~~L~~H~~~h~~~f~~~~~~l~~h~~~ 181 (338)
.|.|+. |.........|..|.+.-++. +.|.+|- +.|.. ...|..|.
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~-------------------- 208 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHK-------------------- 208 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccc--------------------
Confidence 466764 777777788899998875543 5788873 23332 33344442
Q ss_pred hhcccccCCC----cceeccccccccCChHHHHHHHhhhccCCCCCceecCcCc----ccccChhHHHHHHHcCCCceec
Q psy7466 182 CLMKFTQSGR----SSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCS----LCFDQGSLLKAHVLEKHEVFQC 253 (338)
Q Consensus 182 c~~~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~----~~f~~~~~l~~H~~~~~~~~~C 253 (338)
..-..+ .--.|.+|...|-+...|..|++..| ++-|.|..-+ .-|..-..|..|.+.. -|.|
T Consensus 209 ----~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~H----E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~--hy~c 278 (493)
T COG5236 209 ----NGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH----EACHICDMVGPIRYQYFKSYEDLEAHFRNA--HYCC 278 (493)
T ss_pred ----cCCccccCcCCCchhhhccceecChHHHHHHHHhhh----hhhhhhhccCccchhhhhCHHHHHHHhhcC--ceEE
Confidence 111111 12369999999999999999997667 4455554433 2377888899997653 3666
Q ss_pred cc--cc----ccccChhhHHHHhhccCC
Q psy7466 254 TQ--CE----KYYRSQSTLDVHVSKKHP 275 (338)
Q Consensus 254 ~~--C~----k~f~~~~~L~~H~~~~H~ 275 (338)
.. |- ..|.....|..|+.+.|.
T Consensus 279 t~qtc~~~k~~vf~~~~el~~h~~~~h~ 306 (493)
T COG5236 279 TFQTCRVGKCYVFPYHTELLEHLTRFHK 306 (493)
T ss_pred EEEEEecCcEEEeccHHHHHHHHHHHhh
Confidence 54 52 589999999999999993
No 39
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.65 E-value=0.0006 Score=59.90 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=92.4
Q ss_pred cccccc--ccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccccCCCcceeccccc---------cccCChHHH
Q psy7466 141 EYQCSV--CSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICF---------EYFSLLESL 209 (338)
Q Consensus 141 ~~~C~~--C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~---------~~f~~~~~l 209 (338)
.|.|+. |..+......|..|.+..+. .+.|.+|- ....+...|
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~--------------------------~~~C~~C~~nKk~F~~E~~lF~~~~L 204 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG--------------------------FVLCSECIGNKKDFWNEIRLFRSSTL 204 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC--------------------------cEEhHhhhcCcccCccceeeeecccc
Confidence 388886 77777778889999753211 24444442 223345667
Q ss_pred HHHHhhhccCCCCC-ceecCcCcccccChhHHHHHHHc-CCCceeccccc----ccccChhhHHHHhhccCCCCCCcccc
Q psy7466 210 ETHITRRHIGICEE-PYQCSQCSLCFDQGSLLKAHVLE-KHEVFQCTQCE----KYYRSQSTLDVHVSKKHPAGTGKVKR 283 (338)
Q Consensus 210 ~~H~~~~H~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~C~~C~----k~f~~~~~L~~H~~~~H~~~~~~~~C 283 (338)
+.|...--.+.|-+ --.|..|...|..-..|..|++. +++=|.|+.=+ ..|.+...|..|....| |.|
T Consensus 205 r~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h------y~c 278 (493)
T COG5236 205 RDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAH------YCC 278 (493)
T ss_pred cccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCc------eEE
Confidence 77752111111111 12599999999999999999998 55545554322 36888899999988888 777
Q ss_pred CC--CC----CCCCCCCCcccccccCCCCCCCc
Q psy7466 284 DI--KP----NTNILTVTPNRRSARNDSTKATV 310 (338)
Q Consensus 284 ~~--C~----~~f~~~~~l~~H~~~~h~~~~~~ 310 (338)
.. |- +.|.....|..|+.+-|+.....
T Consensus 279 t~qtc~~~k~~vf~~~~el~~h~~~~h~~~~~~ 311 (493)
T COG5236 279 TFQTCRVGKCYVFPYHTELLEHLTRFHKVNARL 311 (493)
T ss_pred EEEEEecCcEEEeccHHHHHHHHHHHhhccccc
Confidence 55 43 56888889999998888776543
No 40
>KOG2231|consensus
Probab=96.61 E-value=0.0017 Score=63.08 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=64.4
Q ss_pred eccccccccCChHHHHHHHhhhccCCCCCceecCcCc---------ccccChhHHHHHHHcCCC-------ceecccccc
Q psy7466 195 KCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCS---------LCFDQGSLLKAHVLEKHE-------VFQCTQCEK 258 (338)
Q Consensus 195 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~---------~~f~~~~~l~~H~~~~~~-------~~~C~~C~k 258 (338)
.|..| -.|.+...|+.|+...|.. +.|.+|- ....+...|..|+..+.. --.|..|..
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H~~-----~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~ 190 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQHKL-----HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHE 190 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhhhh-----hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhh
Confidence 45555 4555788889998666633 4444433 233456677788776321 146888888
Q ss_pred cccChhhHHHHhhccCCCCCCccccCCCC------CCCCCCCCcccccccCCCCC
Q psy7466 259 YYRSQSTLDVHVSKKHPAGTGKVKRDIKP------NTNILTVTPNRRSARNDSTK 307 (338)
Q Consensus 259 ~f~~~~~L~~H~~~~H~~~~~~~~C~~C~------~~f~~~~~l~~H~~~~h~~~ 307 (338)
.|-....|.+|+...| |.|..|. ..|.....|..|-+..|-.-
T Consensus 191 ~fld~~el~rH~~~~h------~~chfC~~~~~~neyy~~~~dLe~HfR~~HflC 239 (669)
T KOG2231|consen 191 RFLDDDELYRHLRFDH------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLC 239 (669)
T ss_pred hhccHHHHHHhhccce------eheeecCcccccchhcccchHHHHHhhhcCccc
Confidence 8888888888866666 6666663 45555666777776666544
No 41
>KOG2482|consensus
Probab=96.60 E-value=0.0028 Score=55.73 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=85.1
Q ss_pred ceeccccccccC-ChHHHHHHHhhhccCCCCC-------------------ceecCcCcccccChhHHHHHHHc-CCC--
Q psy7466 193 SFKCAICFEYFS-LLESLETHITRRHIGICEE-------------------PYQCSQCSLCFDQGSLLKAHVLE-KHE-- 249 (338)
Q Consensus 193 ~~~C~~C~~~f~-~~~~l~~H~~~~H~~~~~~-------------------~~~C~~C~~~f~~~~~l~~H~~~-~~~-- 249 (338)
..+|-.|+..+. +++.+..|+-..|.-.-.. .+.|-+|.+.|..+..|+.||+. +++
T Consensus 144 slqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrri 223 (423)
T KOG2482|consen 144 SLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRRI 223 (423)
T ss_pred eeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCccc
Confidence 457989987664 5677788876666432112 27899999999999999999987 332
Q ss_pred -------------------------------------------------------ceecccccccccChhhHHHHhhccC
Q psy7466 250 -------------------------------------------------------VFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 250 -------------------------------------------------------~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
...|-.|....-+...|..|+..+|
T Consensus 224 nPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vH 303 (423)
T KOG2482|consen 224 NPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVH 303 (423)
T ss_pred CCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHH
Confidence 2589999999999999999999999
Q ss_pred CC-------------------------CCCccccCCCCCCCCCCCCcccccccC
Q psy7466 275 PA-------------------------GTGKVKRDIKPNTNILTVTPNRRSARN 303 (338)
Q Consensus 275 ~~-------------------------~~~~~~C~~C~~~f~~~~~l~~H~~~~ 303 (338)
.- ....-.|..|...|.....|..|+..+
T Consensus 304 e~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 304 EFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred HhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence 31 112346899999999999999998754
No 42
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.44 E-value=0.0023 Score=34.12 Aligned_cols=23 Identities=35% Similarity=0.764 Sum_probs=17.1
Q ss_pred cccccccccccChhhHHHHHHHh
Q psy7466 142 YQCSVCSQVFIEKKNLSKHFFKC 164 (338)
Q Consensus 142 ~~C~~C~~~f~~~~~L~~H~~~h 164 (338)
|.|..|++.|.+...|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 46788888888888888887543
No 43
>KOG1146|consensus
Probab=96.32 E-value=0.002 Score=66.30 Aligned_cols=112 Identities=16% Similarity=0.270 Sum_probs=90.2
Q ss_pred eccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcCC--------------------------
Q psy7466 195 KCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKH-------------------------- 248 (338)
Q Consensus 195 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~-------------------------- 248 (338)
.|.-|+..+.+...+..|+...|.. .+.|+|+.|+..|.....|..|++..+
T Consensus 438 e~~~~e~~~~s~r~~~~~t~~L~S~--~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~ 515 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTVVLHSF--FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCP 515 (1406)
T ss_pred cccchhhhhhhhcccccceeeeecc--cccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCC
Confidence 4566777788888888888677877 689999999999999999999998721
Q ss_pred -CceecccccccccChhhHHHHhhc-cCC----------------------------------CC------CCccccCCC
Q psy7466 249 -EVFQCTQCEKYYRSQSTLDVHVSK-KHP----------------------------------AG------TGKVKRDIK 286 (338)
Q Consensus 249 -~~~~C~~C~k~f~~~~~L~~H~~~-~H~----------------------------------~~------~~~~~C~~C 286 (338)
++|.|..|...+..+.+|..|++. .|. .+ .-.+.|..|
T Consensus 516 ~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc 595 (1406)
T KOG1146|consen 516 GKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVC 595 (1406)
T ss_pred CCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhh
Confidence 279999999999999999999755 341 01 124899999
Q ss_pred CCCCCCCCCcccccccCCCCCC
Q psy7466 287 PNTNILTVTPNRRSARNDSTKA 308 (338)
Q Consensus 287 ~~~f~~~~~l~~H~~~~h~~~~ 308 (338)
++...-...|+.|+...+....
T Consensus 596 ~yetniarnlrihmtss~~s~~ 617 (1406)
T KOG1146|consen 596 SYETNIARNLRIHMTASPSSSP 617 (1406)
T ss_pred cchhhhhhccccccccCCCCCC
Confidence 9999999999999986554444
No 44
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.31 E-value=0.0036 Score=39.07 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=22.9
Q ss_pred cccccccccchhhHhhhcChHHHHHHHHHhcCCCc
Q psy7466 107 KKKDEILLMKALDEEMFKMDEENNKEMERISQGLE 141 (338)
Q Consensus 107 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 141 (338)
......+-.|++|+..+....+|.+|+..+++.+|
T Consensus 18 ~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 18 KSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 34456777899999999988999999888777654
No 45
>KOG4173|consensus
Probab=96.20 E-value=0.0036 Score=51.12 Aligned_cols=92 Identities=17% Similarity=0.352 Sum_probs=72.3
Q ss_pred cccccchh--hHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhccccc
Q psy7466 111 EILLMKAL--DEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQ 188 (338)
Q Consensus 111 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h 188 (338)
...|.|++ |...|.+...+..|..+-++. .|.+|.+.|.+...|..|+..-+..|.+. ...
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa--------------~ve 139 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQA--------------LVE 139 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHH--------------HHH
Confidence 34466765 889999999999998775554 79999999999999999985444444444 455
Q ss_pred CCCcceeccc--cccccCChHHHHHHHhhhccC
Q psy7466 189 SGRSSFKCAI--CFEYFSLLESLETHITRRHIG 219 (338)
Q Consensus 189 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~ 219 (338)
.|..-|.|-+ |+..|.+...-..|+...|.-
T Consensus 140 RG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~ 172 (253)
T KOG4173|consen 140 RGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHKY 172 (253)
T ss_pred cCccHHHHHHHhhhhhhhhhhhhhhHHHHhccC
Confidence 5667799966 999999999999999788865
No 46
>KOG2231|consensus
Probab=96.15 E-value=0.0068 Score=58.99 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=92.3
Q ss_pred cccchhhHhhhc---------------ChHHHHHHHHHhcCCCcccccccc---------ccccChhhHHHHHHHhhhhh
Q psy7466 113 LLMKALDEEMFK---------------MDEENNKEMERISQGLEYQCSVCS---------QVFIEKKNLSKHFFKCLMKF 168 (338)
Q Consensus 113 ~~~C~~C~~~f~---------------~~~~l~~H~~~h~~~~~~~C~~C~---------~~f~~~~~L~~H~~~h~~~f 168 (338)
.+.|.+|+..|. +...|+.||...|. .+.|.+|- ....+...|+.|++.-
T Consensus 99 ~~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~g---- 172 (669)
T KOG2231|consen 99 HHSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFG---- 172 (669)
T ss_pred hhhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcC----
Confidence 367888887773 56777888754332 23555542 2344556666765211
Q ss_pred hhhhhchhhhhhhhhcccccCCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcC------cccccChhHHHH
Q psy7466 169 TQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQC------SLCFDQGSLLKA 242 (338)
Q Consensus 169 ~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C------~~~f~~~~~l~~ 242 (338)
+.-...+.| --.|..|...|.....|..|++..| |.|..| +.-|.....|..
T Consensus 173 -------------d~d~~s~rG--hp~C~~C~~~fld~~el~rH~~~~h-------~~chfC~~~~~~neyy~~~~dLe~ 230 (669)
T KOG2231|consen 173 -------------DPDDESCRG--HPLCKFCHERFLDDDELYRHLRFDH-------EFCHFCDYKTGQNEYYNDYDDLEE 230 (669)
T ss_pred -------------CCccccccC--CccchhhhhhhccHHHHHHhhccce-------eheeecCcccccchhcccchHHHH
Confidence 000012222 2469999999999999999984444 445555 345777788999
Q ss_pred HHHcCCCceecc--ccc-ccccC----hhhHHHHhhccCCCCCCccccC--CCC----CCCCCCCCcccccccCCC
Q psy7466 243 HVLEKHEVFQCT--QCE-KYYRS----QSTLDVHVSKKHPAGTGKVKRD--IKP----NTNILTVTPNRRSARNDS 305 (338)
Q Consensus 243 H~~~~~~~~~C~--~C~-k~f~~----~~~L~~H~~~~H~~~~~~~~C~--~C~----~~f~~~~~l~~H~~~~h~ 305 (338)
|.+.+| |.|. .|. +.|.. ...|..| .+.+ .-++.|.|. .=| ..+.....+..|.+..+.
T Consensus 231 HfR~~H--flCE~~~C~~~~f~~~~~~ei~lk~~-~~~~-~~e~~~~~~~~r~Gr~s~~~r~~~~~~~~~~~~~~~ 302 (669)
T KOG2231|consen 231 HFRKGH--FLCEEEFCRTKKFYVAFELEIELKAH-NRFI-QHEKCYICRPSRPGRPSSRYRGPYRRLESHFRVSDE 302 (669)
T ss_pred HhhhcC--ccccccccccceeeehhHHHHHHHhh-cccc-chheeccCCcccCCCCcccccCCccccccccccccc
Confidence 988765 5666 453 33333 3444444 2333 446667775 333 233344455566665554
No 47
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.06 E-value=0.0032 Score=33.53 Aligned_cols=23 Identities=35% Similarity=0.912 Sum_probs=17.3
Q ss_pred eecccccccccChhhHHHHhhccC
Q psy7466 251 FQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
|.|..|++.|.+...|..| +..|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H-~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEH-MRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHH-HHHh
Confidence 5688888888888888888 4466
No 48
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.90 E-value=0.0042 Score=33.10 Aligned_cols=21 Identities=24% Similarity=0.790 Sum_probs=16.3
Q ss_pred cccccccccccChhhHHHHHH
Q psy7466 142 YQCSVCSQVFIEKKNLSKHFF 162 (338)
Q Consensus 142 ~~C~~C~~~f~~~~~L~~H~~ 162 (338)
|.|.+|+..|.+...|..|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 568888888888888888873
No 49
>PRK04860 hypothetical protein; Provisional
Probab=95.82 E-value=0.0048 Score=49.63 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=31.3
Q ss_pred ceecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCC
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTV 294 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~ 294 (338)
+|.|. |+. ....+..| .++| +++++|.|..|+..|....
T Consensus 119 ~Y~C~-C~~---~~~~~rrH-~ri~-~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRH-NRVV-RGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEcC-CCC---eeCHHHHH-HHHh-cCCccEECCCCCceeEEec
Confidence 68887 887 66778888 8888 8888888888888876543
No 50
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.67 E-value=0.0083 Score=31.91 Aligned_cols=20 Identities=45% Similarity=0.806 Sum_probs=13.7
Q ss_pred eeccccccccCChHHHHHHH
Q psy7466 194 FKCAICFEYFSLLESLETHI 213 (338)
Q Consensus 194 ~~C~~C~~~f~~~~~l~~H~ 213 (338)
|.|.+|+..|.+...|..|+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~ 20 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHL 20 (25)
T ss_dssp EEETTTTEEESSHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHH
Confidence 45677777777777777776
No 51
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.66 E-value=0.0052 Score=32.43 Aligned_cols=23 Identities=26% Similarity=0.709 Sum_probs=14.4
Q ss_pred eecccccccccChhhHHHHhhccC
Q psy7466 251 FQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
|.|+.|++... ...|..|++..|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 56777777776 777777755545
No 52
>KOG2785|consensus
Probab=95.60 E-value=0.0093 Score=53.57 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=93.3
Q ss_pred cccccccccccChhhHHHHHHH--hh---------------hhhhhhhhchhhhhhhhhcccccCCCcceeccccccccC
Q psy7466 142 YQCSVCSQVFIEKKNLSKHFFK--CL---------------MKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFS 204 (338)
Q Consensus 142 ~~C~~C~~~f~~~~~L~~H~~~--h~---------------~~f~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~~~f~ 204 (338)
|.|..|...|.+...-+.|+++ |. ..|..+-.....- .....-.+..++.|.+|.+.|.
T Consensus 4 ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~----~~~~~e~~~~~~~c~~c~k~~~ 79 (390)
T KOG2785|consen 4 FTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSE----KEENLEEAESVVYCEACNKSFA 79 (390)
T ss_pred ceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhh----hhhhhhhcccceehHHhhcccc
Confidence 6788888888887777777753 21 0111110000000 0001133456799999999999
Q ss_pred ChHHHHHHHhhh-ccCCCCC-------------cee-------------cCcCcccccChhHHHHHHHc-----------
Q psy7466 205 LLESLETHITRR-HIGICEE-------------PYQ-------------CSQCSLCFDQGSLLKAHVLE----------- 246 (338)
Q Consensus 205 ~~~~l~~H~~~~-H~~~~~~-------------~~~-------------C~~C~~~f~~~~~l~~H~~~----------- 246 (338)
+..+...|+... |.....+ .+. +..+...+........+...
T Consensus 80 s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~ 159 (390)
T KOG2785|consen 80 SPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGD 159 (390)
T ss_pred ChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccc
Confidence 999999997422 3211111 111 22222222222222222111
Q ss_pred ---CCCceecccccccccChhhHHHHhhccCCC---------------------CCCccccCCCC---CCCCCCCCcccc
Q psy7466 247 ---KHEVFQCTQCEKYYRSQSTLDVHVSKKHPA---------------------GTGKVKRDIKP---NTNILTVTPNRR 299 (338)
Q Consensus 247 ---~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~---------------------~~~~~~C~~C~---~~f~~~~~l~~H 299 (338)
..-|-.|-.|++.|.+...-..||...|.- -...|.|-.|+ +.|.+..+.+.|
T Consensus 160 ~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~H 239 (390)
T KOG2785|consen 160 DEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAH 239 (390)
T ss_pred hhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHH
Confidence 112578999999999999999997777720 12357899999 999999999999
Q ss_pred cccC
Q psy7466 300 SARN 303 (338)
Q Consensus 300 ~~~~ 303 (338)
|...
T Consensus 240 M~~K 243 (390)
T KOG2785|consen 240 MRDK 243 (390)
T ss_pred Hhhc
Confidence 8654
No 53
>PRK04860 hypothetical protein; Provisional
Probab=95.46 E-value=0.0058 Score=49.19 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=35.8
Q ss_pred cccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccChh
Q psy7466 111 EILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKK 155 (338)
Q Consensus 111 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 155 (338)
.-+|.|. |+. ....+.+|.++|++.++|.|..|+..|....
T Consensus 117 ~~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 117 TFPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 4689998 998 6778999999999999999999999886543
No 54
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.37 E-value=0.022 Score=35.63 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=16.9
Q ss_pred CCCcceeccccccccCChHHHHHHHhhhcc
Q psy7466 189 SGRSSFKCAICFEYFSLLESLETHITRRHI 218 (338)
Q Consensus 189 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~ 218 (338)
....|-.|++|+..+....+|++|+...|.
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~ 49 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHF 49 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence 345567777777777777777777755554
No 55
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.27 E-value=0.016 Score=30.51 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=11.3
Q ss_pred eeccccccccCChHHHHHHHh
Q psy7466 194 FKCAICFEYFSLLESLETHIT 214 (338)
Q Consensus 194 ~~C~~C~~~f~~~~~l~~H~~ 214 (338)
|+|+.|+.... ...|..|++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~ 20 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLK 20 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHH
Confidence 45666666665 666666663
No 56
>KOG4173|consensus
Probab=95.20 E-value=0.0084 Score=49.03 Aligned_cols=77 Identities=31% Similarity=0.718 Sum_probs=65.1
Q ss_pred cceeccc--cccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHc------------CCCceeccc--
Q psy7466 192 SSFKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLE------------KHEVFQCTQ-- 255 (338)
Q Consensus 192 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~------------~~~~~~C~~-- 255 (338)
..|.|++ |...|.+...+..|....|.. .|..|.+.|.+...|..|+.. |...|.|-+
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~------sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEg 151 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN------SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEG 151 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc------hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHh
Confidence 4588988 889999988888887555644 799999999999999999754 445699976
Q ss_pred ccccccChhhHHHHhhccC
Q psy7466 256 CEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 256 C~k~f~~~~~L~~H~~~~H 274 (338)
|+-.|.+...-..|+..+|
T Consensus 152 Ct~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 152 CTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhhhhhHHHHhc
Confidence 9999999999999999999
No 57
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.19 E-value=0.0087 Score=32.60 Aligned_cols=20 Identities=40% Similarity=1.034 Sum_probs=15.4
Q ss_pred eecccccccccChhhHHHHh
Q psy7466 251 FQCTQCEKYYRSQSTLDVHV 270 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H~ 270 (338)
|.|..|++.|.+...|..|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~ 21 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHM 21 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCT
T ss_pred CCcccCCCCcCCHHHHHHHH
Confidence 67788888888888887774
No 58
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.89 E-value=0.0065 Score=57.24 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=29.0
Q ss_pred cccchhhHhhhcChHHHHHHHH--HhcCC--Cccccc--cccccccChhhHHHHH
Q psy7466 113 LLMKALDEEMFKMDEENNKEME--RISQG--LEYQCS--VCSQVFIEKKNLSKHF 161 (338)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~L~~H~ 161 (338)
.+.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|.
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 343 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHI 343 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCc
Confidence 4556666666666666666655 55555 566666 4666666666555554
No 59
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.50 E-value=0.072 Score=39.75 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=56.2
Q ss_pred CcceeccccccccCChHHHHHHHhhhccCCCCCce------------ecCcCcccccChhHHHHHHHcCCCceecccccc
Q psy7466 191 RSSFKCAICFEYFSLLESLETHITRRHIGICEEPY------------QCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEK 258 (338)
Q Consensus 191 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~------------~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k 258 (338)
.-|..|++||-+..+...|.+-. .|.-. -++| .|--|...|........-.......|.|+.|..
T Consensus 13 ~LP~~CpiCgLtLVss~HLARSy--HHLfP-l~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~ 89 (112)
T TIGR00622 13 ELPVECPICGLTLILSTHLARSY--HHLFP-LKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKN 89 (112)
T ss_pred CCCCcCCcCCCEEeccchHHHhh--hccCC-CcccccccccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCC
Confidence 45789999999998888877653 34210 1222 388888888765311110011345788888888
Q ss_pred cccChhhHHHHhhccCCCCCCccccCCCC
Q psy7466 259 YYRSQSTLDVHVSKKHPAGTGKVKRDIKP 287 (338)
Q Consensus 259 ~f~~~~~L~~H~~~~H~~~~~~~~C~~C~ 287 (338)
.|=..-..-.| ...| .|+-|.
T Consensus 90 ~FC~dCD~fiH-e~Lh-------~CPGC~ 110 (112)
T TIGR00622 90 VFCVDCDVFVH-ESLH-------CCPGCI 110 (112)
T ss_pred ccccccchhhh-hhcc-------CCcCCC
Confidence 88888888888 7777 477665
No 60
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.39 E-value=0.025 Score=53.26 Aligned_cols=140 Identities=18% Similarity=0.245 Sum_probs=101.4
Q ss_pred CccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhccc--ccCCC--cceecc--ccccccCChHHHHHHH
Q psy7466 140 LEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKF--TQSGR--SSFKCA--ICFEYFSLLESLETHI 213 (338)
Q Consensus 140 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~ 213 (338)
.++.|..|...|.....|..|. . .|.++ +++.|+ .|++.|.....+..|.
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~------------------------~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 343 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHL------------------------RSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHI 343 (467)
T ss_pred cCCCCccccCCccccccccccc------------------------cccccccccCCceeeeccCCCccccccccccCCc
Confidence 4789999999999999999997 4 68888 899999 7999999999999998
Q ss_pred hhhccCCCCCceecCc--CcccccChhHH----HHHHHc---CCCceeccc--ccccccChhhHHHHhhccCCCCCC--c
Q psy7466 214 TRRHIGICEEPYQCSQ--CSLCFDQGSLL----KAHVLE---KHEVFQCTQ--CEKYYRSQSTLDVHVSKKHPAGTG--K 280 (338)
Q Consensus 214 ~~~H~~~~~~~~~C~~--C~~~f~~~~~l----~~H~~~---~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~--~ 280 (338)
..|.+ ..++.|.. |...+.....- ...... ....+.|.. |-..+.....+..| ...| .... .
T Consensus 344 -~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 418 (467)
T COG5048 344 -LLHTS--ISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH-IITH-LSFRPYN 418 (467)
T ss_pred -ccccC--CCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccc-cccc-cccCCcC
Confidence 88887 56666654 44444333221 111111 233455543 77788888888888 6667 4444 5
Q ss_pred cccCCCCCCCCCCCCcccccccCCCCCC
Q psy7466 281 VKRDIKPNTNILTVTPNRRSARNDSTKA 308 (338)
Q Consensus 281 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~ 308 (338)
+.+..|...|.....+..|++.+.....
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (467)
T COG5048 419 CKNPPCSKSFNRHYNLIPHKKIHTNHAP 446 (467)
T ss_pred CCCCcchhhccCcccccccccccccCCc
Confidence 6778899999999988888877655443
No 61
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.27 E-value=0.035 Score=29.59 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=12.2
Q ss_pred ccccccccccChhhHHHHHH
Q psy7466 143 QCSVCSQVFIEKKNLSKHFF 162 (338)
Q Consensus 143 ~C~~C~~~f~~~~~L~~H~~ 162 (338)
.|+.||+.| ....|..|+.
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 567777777 5556666653
No 62
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.23 E-value=0.019 Score=31.21 Aligned_cols=20 Identities=40% Similarity=0.839 Sum_probs=15.3
Q ss_pred eeccccccccCChHHHHHHH
Q psy7466 194 FKCAICFEYFSLLESLETHI 213 (338)
Q Consensus 194 ~~C~~C~~~f~~~~~l~~H~ 213 (338)
|.|..|++.|.+...|..|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~ 21 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHM 21 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCT
T ss_pred CCcccCCCCcCCHHHHHHHH
Confidence 56777777777777777776
No 63
>KOG2482|consensus
Probab=94.19 E-value=0.12 Score=45.92 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=88.8
Q ss_pred cccccchhhHhhhc-ChHHHHHHHHHhcCC----------------------CccccccccccccChhhHHHHHHHh---
Q psy7466 111 EILLMKALDEEMFK-MDEENNKEMERISQG----------------------LEYQCSVCSQVFIEKKNLSKHFFKC--- 164 (338)
Q Consensus 111 ~~~~~C~~C~~~f~-~~~~l~~H~~~h~~~----------------------~~~~C~~C~~~f~~~~~L~~H~~~h--- 164 (338)
....+|-.|...+. .++....|+-..++- ..+.|-.|.+.|..+..|+.||+.-
T Consensus 142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hr 221 (423)
T KOG2482|consen 142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHR 221 (423)
T ss_pred eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCc
Confidence 44567999976554 566677776543321 1378999999999999999999753
Q ss_pred --------------------hhhhhhhhhchhhhhhhhhccc--------ccCCCcc--eeccccccccCChHHHHHHHh
Q psy7466 165 --------------------LMKFTQKKKNLSKHFFKCLMKF--------TQSGRSS--FKCAICFEYFSLLESLETHIT 214 (338)
Q Consensus 165 --------------------~~~f~~~~~~l~~h~~~c~~~~--------~h~~~~~--~~C~~C~~~f~~~~~l~~H~~ 214 (338)
++........+..-.+ =.+.. .-.+..+ ..|-.|.....+...|..||.
T Consensus 222 rinPknreYDkfyiINY~ev~ks~t~~~~e~dret~-~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk 300 (423)
T KOG2482|consen 222 RINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETN-EDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMK 300 (423)
T ss_pred ccCCCccccceEEEEeHhhcCCccchhhhhhhhhhh-ccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHH
Confidence 1111111000000000 00000 0001122 589899988888889999998
Q ss_pred hhccCCCCCceecCcCcccccChhHHHHHHHcCCCceecccccccccChhhHHHHh
Q psy7466 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVHV 270 (338)
Q Consensus 215 ~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~~L~~H~ 270 (338)
.+|-..-.+. + ..=+.-|-..--+..=++.....-.|-.|.-.|.....|..||
T Consensus 301 ~vHe~Dl~Ki-~-sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm 354 (423)
T KOG2482|consen 301 IVHEFDLLKI-Q-SDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHM 354 (423)
T ss_pred HHHHhhHHhh-c-cccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhc
Confidence 7785411111 0 0011122222223333333344557788889999999999994
No 64
>KOG2893|consensus
Probab=94.15 E-value=0.015 Score=48.75 Aligned_cols=49 Identities=31% Similarity=0.617 Sum_probs=33.5
Q ss_pred CceecCcCcccccChhHHHHHHHcCCCceecccccccccChhhHHHHhhccC
Q psy7466 223 EPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 223 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
++| |.+|++.|....-|..|++. +-|+|.+|.+..-+--.|..|-+.+|
T Consensus 10 kpw-cwycnrefddekiliqhqka--khfkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 10 KPW-CWYCNREFDDEKILIQHQKA--KHFKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred Cce-eeecccccchhhhhhhhhhh--ccceeeeehhhhccCCCceeehhhhh
Confidence 444 67777777777777777653 34777777777666667777766666
No 65
>KOG2785|consensus
Probab=94.01 E-value=0.16 Score=45.95 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=40.7
Q ss_pred cccchhhHhhhcChHHHHHHHHH--hc-----------------------------------CCCccccccccccccChh
Q psy7466 113 LLMKALDEEMFKMDEENNKEMER--IS-----------------------------------QGLEYQCSVCSQVFIEKK 155 (338)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~~--h~-----------------------------------~~~~~~C~~C~~~f~~~~ 155 (338)
.|.|.-|...|.+...-+.|+++ |. ...++.|.+|.+.|.+..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 47899999999998888889875 31 123588999999999999
Q ss_pred hHHHHHH
Q psy7466 156 NLSKHFF 162 (338)
Q Consensus 156 ~L~~H~~ 162 (338)
....|+.
T Consensus 83 a~~~hl~ 89 (390)
T KOG2785|consen 83 AHENHLK 89 (390)
T ss_pred hHHHHHH
Confidence 9999984
No 66
>KOG2893|consensus
Probab=93.12 E-value=0.036 Score=46.48 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=42.9
Q ss_pred ecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcccccccCCCCC
Q psy7466 252 QCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRSARNDSTK 307 (338)
Q Consensus 252 ~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~ 307 (338)
-|=+|++.|-...-|.+|.+..| |+|.+|.+..-+-..|..|-...|...
T Consensus 12 wcwycnrefddekiliqhqkakh------fkchichkkl~sgpglsihcmqvhket 61 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAKH------FKCHICHKKLFSGPGLSIHCMQVHKET 61 (341)
T ss_pred eeeecccccchhhhhhhhhhhcc------ceeeeehhhhccCCCceeehhhhhhhh
Confidence 38889999999999999977778 999999999989999988866665543
No 67
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=92.81 E-value=0.089 Score=28.02 Aligned_cols=8 Identities=38% Similarity=0.995 Sum_probs=3.2
Q ss_pred cCcCcccc
Q psy7466 227 CSQCSLCF 234 (338)
Q Consensus 227 C~~C~~~f 234 (338)
|+.||+.|
T Consensus 5 C~~CgR~F 12 (25)
T PF13913_consen 5 CPICGRKF 12 (25)
T ss_pred CCCCCCEE
Confidence 34444444
No 68
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=92.49 E-value=0.092 Score=30.31 Aligned_cols=22 Identities=18% Similarity=0.608 Sum_probs=16.4
Q ss_pred ceecccccccccChhhHHHHhh
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVS 271 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~ 271 (338)
+|.|.+|++.|.+...+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 5778888888887777777743
No 69
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=92.03 E-value=0.068 Score=33.94 Aligned_cols=28 Identities=29% Similarity=0.623 Sum_probs=22.9
Q ss_pred CCCceecccccccccChhhHHHHhhccC
Q psy7466 247 KHEVFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 247 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
++..+.|+-||..|.....+.+|+.+.|
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 5666788888888888888888887777
No 70
>KOG4167|consensus
Probab=91.87 E-value=0.14 Score=50.02 Aligned_cols=28 Identities=14% Similarity=0.002 Sum_probs=21.9
Q ss_pred cccccchhhHhhhcChHHHHHHHHHhcC
Q psy7466 111 EILLMKALDEEMFKMDEENNKEMERISQ 138 (338)
Q Consensus 111 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 138 (338)
...|.|..|++.|.....++.||++|..
T Consensus 790 ~giFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 790 TGIFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred CceeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 5667888888888888888888888753
No 71
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.70 E-value=0.15 Score=29.42 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=14.5
Q ss_pred ceeccccccccCChHHHHHHH
Q psy7466 193 SFKCAICFEYFSLLESLETHI 213 (338)
Q Consensus 193 ~~~C~~C~~~f~~~~~l~~H~ 213 (338)
+|.|.+|+..|.+...+..|+
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~ 23 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHL 23 (35)
T ss_pred CeEccccCCccCCHHHHHHHH
Confidence 466777777777777777666
No 72
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=90.72 E-value=0.15 Score=29.16 Aligned_cols=8 Identities=38% Similarity=1.352 Sum_probs=3.5
Q ss_pred ceecCcCc
Q psy7466 224 PYQCSQCS 231 (338)
Q Consensus 224 ~~~C~~C~ 231 (338)
++.|++|+
T Consensus 17 ~~~CP~Cg 24 (33)
T cd00350 17 PWVCPVCG 24 (33)
T ss_pred CCcCcCCC
Confidence 34444444
No 73
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=90.03 E-value=0.19 Score=31.92 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=20.9
Q ss_pred ccccccccchhhHhhhcChHHHHHHHHHh
Q psy7466 108 KKDEILLMKALDEEMFKMDEENNKEMERI 136 (338)
Q Consensus 108 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 136 (338)
..++..+.|+-|+..|.....+.+|...-
T Consensus 12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKa 40 (65)
T COG4049 12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKA 40 (65)
T ss_pred cCCceeeeCCchhHHHHHhHHHHHHhhHH
Confidence 34567777888888888777777776553
No 74
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=88.56 E-value=0.69 Score=34.70 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=20.5
Q ss_pred cceeccccccccCChHHHHHHHhhhccC
Q psy7466 192 SSFKCAICFEYFSLLESLETHITRRHIG 219 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~ 219 (338)
+...|..|+..... +.+..|++..|..
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~ 36 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRHHI 36 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhccc
Confidence 55789999988765 7899999656643
No 75
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.38 E-value=0.093 Score=44.65 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=7.9
Q ss_pred CceecCcCcccccChh
Q psy7466 223 EPYQCSQCSLCFDQGS 238 (338)
Q Consensus 223 ~~~~C~~C~~~f~~~~ 238 (338)
+.+.|++|+..|.++.
T Consensus 4 k~~~CPvC~~~F~~~~ 19 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKK 19 (214)
T ss_pred CceECCCCCCeeeeeE
Confidence 3445555555555443
No 76
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.15 E-value=0.18 Score=42.95 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=28.5
Q ss_pred cceeccccccccCChHHHHHHHhhhccCCC-------CCc-----eecCcCcccccCh
Q psy7466 192 SSFKCAICFEYFSLLESLETHITRRHIGIC-------EEP-----YQCSQCSLCFDQG 237 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~-------~~~-----~~C~~C~~~f~~~ 237 (338)
+.+.|++|+..|.+........+....... ..| ..|+.||++|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 568999999999988655555422221110 112 4688888876644
No 77
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=86.03 E-value=0.43 Score=41.84 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=30.8
Q ss_pred cCcCcccccChhHHHHHHHcCCCceecccccccccChhhHHHHhhccC
Q psy7466 227 CSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 227 C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
|-.|.-.|.....-..-..+....|.|+.|...|-.--..-.| ...|
T Consensus 365 Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiH-e~Lh 411 (421)
T COG5151 365 CFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIH-ETLH 411 (421)
T ss_pred ceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHH-HHHh
Confidence 7777777765432221122234568888888888888888888 7777
No 78
>KOG2186|consensus
Probab=85.18 E-value=0.53 Score=40.17 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=39.9
Q ss_pred ccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHHH
Q psy7466 112 ILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHF 161 (338)
Q Consensus 112 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~ 161 (338)
..|.|..||..... ..+.+||-..++ ..|.|--|+..|.. ..+..|.
T Consensus 2 V~FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~ 48 (276)
T KOG2186|consen 2 VFFTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHT 48 (276)
T ss_pred eEEehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhh
Confidence 36899999999864 567889999888 67999999999998 6788886
No 79
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=84.98 E-value=0.45 Score=28.09 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=5.5
Q ss_pred ecccccccccCh
Q psy7466 252 QCTQCEKYYRSQ 263 (338)
Q Consensus 252 ~C~~C~k~f~~~ 263 (338)
.|+.|+..|.-.
T Consensus 4 ~CP~C~~~~~v~ 15 (38)
T TIGR02098 4 QCPNCKTSFRVV 15 (38)
T ss_pred ECCCCCCEEEeC
Confidence 444455444433
No 80
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=84.86 E-value=0.49 Score=35.37 Aligned_cols=35 Identities=6% Similarity=-0.013 Sum_probs=23.5
Q ss_pred ceecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcc
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPN 297 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~ 297 (338)
...|+.||+.|... +..|..|++||..|.-...+.
T Consensus 9 KR~Cp~CG~kFYDL-------------nk~PivCP~CG~~~~~~~~~k 43 (108)
T PF09538_consen 9 KRTCPSCGAKFYDL-------------NKDPIVCPKCGTEFPPEPPLK 43 (108)
T ss_pred cccCCCCcchhccC-------------CCCCccCCCCCCccCcccccc
Confidence 35788888888653 225677888888887773333
No 81
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=84.61 E-value=0.95 Score=29.40 Aligned_cols=10 Identities=20% Similarity=0.936 Sum_probs=4.8
Q ss_pred CCceeccccc
Q psy7466 248 HEVFQCTQCE 257 (338)
Q Consensus 248 ~~~~~C~~C~ 257 (338)
..+|.|+.||
T Consensus 48 g~~Y~Cp~CG 57 (61)
T COG2888 48 GNPYRCPKCG 57 (61)
T ss_pred CCceECCCcC
Confidence 3445555554
No 82
>KOG2272|consensus
Probab=84.57 E-value=0.63 Score=39.62 Aligned_cols=133 Identities=14% Similarity=0.225 Sum_probs=57.7
Q ss_pred ccccccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccccCCCcceeccccccccCChHHHHHHHhhhccCC
Q psy7466 141 EYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGI 220 (338)
Q Consensus 141 ~~~C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~ 220 (338)
-|.|++|.+...+...++.--+.-. +.|+......+...|.|..|...... ..|.---...|.
T Consensus 99 CF~Cd~Cn~~Lad~gf~rnqgr~LC--------------~~Cn~k~Ka~~~g~YvC~KCh~~iD~-~~l~fr~d~yH~-- 161 (332)
T KOG2272|consen 99 CFRCDLCNKHLADQGFYRNQGRALC--------------RECNQKEKAKGRGRYVCQKCHAHIDE-QPLTFRGDPYHP-- 161 (332)
T ss_pred cchhHHHHHHHhhhhhHhhcchHHh--------------hhhhhhhcccccceeehhhhhhhccc-ccccccCCCCCc--
Confidence 3777777776655554443211000 11222223344456777777655443 222111111222
Q ss_pred CCCceecCcCcccccChhH-HHHHHH--cCCCceecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCC
Q psy7466 221 CEEPYQCSQCSLCFDQGSL-LKAHVL--EKHEVFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILT 293 (338)
Q Consensus 221 ~~~~~~C~~C~~~f~~~~~-l~~H~~--~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~ 293 (338)
--|+|..|++...+..- ++.-+- .-+..+.|++||.--.-...-..-.+..| .-..-|.|..|.+.|.--
T Consensus 162 --yHFkCt~C~keL~sdaRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKh-WHveHFvCa~CekPFlGH 234 (332)
T KOG2272|consen 162 --YHFKCTTCGKELTSDAREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKH-WHVEHFVCAKCEKPFLGH 234 (332)
T ss_pred --cceecccccccccchhhhhccceeccccccccCCcccccccCchHHHHHHHhccc-cchhheeehhcCCcccch
Confidence 24778888876555431 100000 01223455555532221111111112223 333347788888777654
No 83
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=84.19 E-value=0.75 Score=34.39 Aligned_cols=32 Identities=16% Similarity=0.497 Sum_probs=26.3
Q ss_pred CceecCcCcccccChhHHHHHHHcCCCceecccccccccCh
Q psy7466 223 EPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQ 263 (338)
Q Consensus 223 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~ 263 (338)
....|+.||..|.-.. ..|..|+.||..|.-.
T Consensus 8 tKR~Cp~CG~kFYDLn---------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLN---------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred CcccCCCCcchhccCC---------CCCccCCCCCCccCcc
Confidence 3468999999997753 4688999999999876
No 84
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=83.85 E-value=0.66 Score=26.73 Aligned_cols=8 Identities=25% Similarity=0.849 Sum_probs=3.4
Q ss_pred eecccccc
Q psy7466 194 FKCAICFE 201 (338)
Q Consensus 194 ~~C~~C~~ 201 (338)
|.|..||.
T Consensus 3 ~~C~~CG~ 10 (34)
T cd00729 3 WVCPVCGY 10 (34)
T ss_pred EECCCCCC
Confidence 34444443
No 85
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=83.82 E-value=0.77 Score=36.55 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=6.5
Q ss_pred ceecCcCcccccC
Q psy7466 224 PYQCSQCSLCFDQ 236 (338)
Q Consensus 224 ~~~C~~C~~~f~~ 236 (338)
-|.|+.|+..|..
T Consensus 99 ~Y~Cp~C~~~y~~ 111 (147)
T smart00531 99 YYKCPNCQSKYTF 111 (147)
T ss_pred EEECcCCCCEeeH
Confidence 3555555555543
No 86
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=83.18 E-value=0.94 Score=26.46 Aligned_cols=8 Identities=25% Similarity=0.870 Sum_probs=3.0
Q ss_pred cccccccc
Q psy7466 196 CAICFEYF 203 (338)
Q Consensus 196 C~~C~~~f 203 (338)
|+.|+..|
T Consensus 5 Cp~C~~~y 12 (36)
T PF13717_consen 5 CPNCQAKY 12 (36)
T ss_pred CCCCCCEE
Confidence 33333333
No 87
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=82.87 E-value=2.2 Score=31.92 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=22.6
Q ss_pred ceec----ccccccccChhhHHHHhhccC
Q psy7466 250 VFQC----TQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 250 ~~~C----~~C~k~f~~~~~L~~H~~~~H 274 (338)
.|.| ..|++.+.+...+..|+...|
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 4899 999999999999999987777
No 88
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=82.43 E-value=1.1 Score=27.52 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=13.7
Q ss_pred CCceecccccccccCh----hhHHHHhhccC
Q psy7466 248 HEVFQCTQCEKYYRSQ----STLDVHVSKKH 274 (338)
Q Consensus 248 ~~~~~C~~C~k~f~~~----~~L~~H~~~~H 274 (338)
.....|.+|++.+... +.|..|+...|
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 3445666676666553 66777755555
No 89
>KOG2186|consensus
Probab=81.20 E-value=1.1 Score=38.39 Aligned_cols=47 Identities=26% Similarity=0.558 Sum_probs=32.5
Q ss_pred ceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHH
Q psy7466 193 SFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL 245 (338)
Q Consensus 193 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~ 245 (338)
.|.|..||....-. .+..|+.+-+ + .-|.|-.|+..|.. .++..|..
T Consensus 3 ~FtCnvCgEsvKKp-~vekH~srCr-n---~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 3 FFTCNVCGESVKKP-QVEKHMSRCR-N---AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred EEehhhhhhhcccc-chHHHHHhcc-C---CeeEEeeccccccc-chhhhhhh
Confidence 37888888877654 5666873333 2 47888888888887 56777754
No 90
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=81.10 E-value=1.1 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.464 Sum_probs=15.5
Q ss_pred ecCcCcccccChhHHHHHHHcCCCceecccccccc
Q psy7466 226 QCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYY 260 (338)
Q Consensus 226 ~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f 260 (338)
.|+.|+..|.-..+. +..+....+|+.|+..|
T Consensus 4 ~CP~C~~~f~v~~~~---l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDK---LPAGGRKVRCPKCGHVF 35 (37)
T ss_pred ECCCCCceEEcCHHH---cccCCcEEECCCCCcEe
Confidence 455565555554421 11234455565555554
No 91
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=79.95 E-value=0.57 Score=25.18 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=7.9
Q ss_pred cccccccccc
Q psy7466 143 QCSVCSQVFI 152 (338)
Q Consensus 143 ~C~~C~~~f~ 152 (338)
.|+.||..|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 7888888774
No 92
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=78.11 E-value=1.7 Score=34.59 Aligned_cols=39 Identities=18% Similarity=0.545 Sum_probs=26.9
Q ss_pred CCCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccc
Q psy7466 189 SGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCF 234 (338)
Q Consensus 189 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f 234 (338)
.....|.|+.|+..|.....+.. .+ . +..|.|+.||...
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~----~d-~--~~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQL----LD-M--DGTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHh----cC-C--CCcEECCCCCCEE
Confidence 44567999999999986544322 11 1 3459999999865
No 93
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=78.02 E-value=1.5 Score=35.49 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=7.3
Q ss_pred CCCCccccCCCC
Q psy7466 276 AGTGKVKRDIKP 287 (338)
Q Consensus 276 ~~~~~~~C~~C~ 287 (338)
.++.|-+||+||
T Consensus 145 ~ge~P~~CPiCg 156 (166)
T COG1592 145 EGEAPEVCPICG 156 (166)
T ss_pred cCCCCCcCCCCC
Confidence 345666666666
No 94
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=77.92 E-value=0.59 Score=37.37 Aligned_cols=18 Identities=0% Similarity=-0.350 Sum_probs=12.7
Q ss_pred ccccCCCCCCCCCCCCcc
Q psy7466 280 KVKRDIKPNTNILTVTPN 297 (338)
Q Consensus 280 ~~~C~~C~~~f~~~~~l~ 297 (338)
.|+|+.||++|.+...+.
T Consensus 28 ~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 28 RRECLACGKRFTTFERVE 45 (154)
T ss_pred eeeccccCCcceEeEecc
Confidence 378888888887755443
No 95
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=77.44 E-value=2 Score=32.73 Aligned_cols=34 Identities=3% Similarity=-0.095 Sum_probs=19.7
Q ss_pred eecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCCCcc
Q psy7466 251 FQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPN 297 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~l~ 297 (338)
..|+.||+.|... +..|..|++||..|.....+.
T Consensus 10 r~Cp~cg~kFYDL-------------nk~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 10 RICPNTGSKFYDL-------------NRRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred ccCCCcCcccccc-------------CCCCccCCCcCCccCcchhhc
Confidence 4677777666532 224566777777765553333
No 96
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=77.19 E-value=1.6 Score=35.13 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=11.1
Q ss_pred cCCCccccccccccccChhhH
Q psy7466 137 SQGLEYQCSVCSQVFIEKKNL 157 (338)
Q Consensus 137 ~~~~~~~C~~C~~~f~~~~~L 157 (338)
.+..-|.|+.|+..|+....+
T Consensus 105 ~~~~~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 105 TNNMFFICPNMCVRFTFNEAM 125 (158)
T ss_pred cCCCeEECCCCCcEeeHHHHH
Confidence 344456666666555544443
No 97
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=76.98 E-value=0.69 Score=31.73 Aligned_cols=20 Identities=10% Similarity=-0.193 Sum_probs=11.0
Q ss_pred CCccccC--CCCCCCCCCCCcc
Q psy7466 278 TGKVKRD--IKPNTNILTVTPN 297 (338)
Q Consensus 278 ~~~~~C~--~C~~~f~~~~~l~ 297 (338)
+..++|. .||.+|.+...+.
T Consensus 25 ~~Y~qC~N~eCg~tF~t~es~s 46 (72)
T PRK09678 25 ERYHQCQNVNCSATFITYESVQ 46 (72)
T ss_pred eeeeecCCCCCCCEEEEEEEEE
Confidence 3445665 5666666554443
No 98
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=76.58 E-value=1.1 Score=31.57 Aligned_cols=11 Identities=18% Similarity=1.038 Sum_probs=4.8
Q ss_pred ceecccccccc
Q psy7466 250 VFQCTQCEKYY 260 (338)
Q Consensus 250 ~~~C~~C~k~f 260 (338)
.+.|..||..|
T Consensus 53 IW~C~kCg~~f 63 (89)
T COG1997 53 IWKCRKCGAKF 63 (89)
T ss_pred eEEcCCCCCee
Confidence 34444444444
No 99
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.90 E-value=3.2 Score=31.09 Aligned_cols=106 Identities=17% Similarity=0.254 Sum_probs=61.0
Q ss_pred ccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHHHHHh---hhhhhhhhhchhhhhhhhhcccccCC
Q psy7466 114 LMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHFFKC---LMKFTQKKKNLSKHFFKCLMKFTQSG 190 (338)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h---~~~f~~~~~~l~~h~~~c~~~~~h~~ 190 (338)
|.|+.|+... -..|..|++||-+......|.+-. -| -..|... .....
T Consensus 2 Y~CPrC~skv--------------C~LP~~CpiCgLtLVss~HLARSy-HHLfPl~~f~ev--------------~~~~~ 52 (112)
T TIGR00622 2 YFCPQCRAKV--------------CELPVECPICGLTLILSTHLARSY-HHLFPLKAFQEI--------------PLEEY 52 (112)
T ss_pred ccCCCCCCCc--------------cCCCCcCCcCCCEEeccchHHHhh-hccCCCcccccc--------------ccccc
Confidence 6677776554 235779999998888777777653 00 0111100 00001
Q ss_pred CcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcCCCceeccccc
Q psy7466 191 RSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCE 257 (338)
Q Consensus 191 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~ 257 (338)
...-.|--|+..|........ ..-.. ...|.|+.|...|-..-++-.|.. .+.|+-|.
T Consensus 53 ~~~~~C~~C~~~f~~~~~~~~---~~~~~--~~~y~C~~C~~~FC~dCD~fiHe~----Lh~CPGC~ 110 (112)
T TIGR00622 53 NGSRFCFGCQGPFPKPPVSPF---DELKD--SHRYVCAVCKNVFCVDCDVFVHES----LHCCPGCI 110 (112)
T ss_pred CCCCcccCcCCCCCCcccccc---ccccc--ccceeCCCCCCccccccchhhhhh----ccCCcCCC
Confidence 112348888888876431110 00011 357999999999988888777744 34566664
No 100
>PHA00626 hypothetical protein
Probab=75.39 E-value=1 Score=28.80 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=6.8
Q ss_pred ceecCcCcccccC
Q psy7466 224 PYQCSQCSLCFDQ 236 (338)
Q Consensus 224 ~~~C~~C~~~f~~ 236 (338)
.|+|+.||+.|+.
T Consensus 23 rYkCkdCGY~ft~ 35 (59)
T PHA00626 23 DYVCCDCGYNDSK 35 (59)
T ss_pred ceEcCCCCCeech
Confidence 4555555555543
No 101
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=75.19 E-value=4.7 Score=31.05 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=8.2
Q ss_pred ceecccccccccCh
Q psy7466 250 VFQCTQCEKYYRSQ 263 (338)
Q Consensus 250 ~~~C~~C~k~f~~~ 263 (338)
|++|..||+.|...
T Consensus 1 PH~Ct~Cg~~f~dg 14 (131)
T PF09845_consen 1 PHQCTKCGRVFEDG 14 (131)
T ss_pred CcccCcCCCCcCCC
Confidence 45566666666544
No 102
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=74.94 E-value=1.2 Score=35.90 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=29.1
Q ss_pred ccccccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccC
Q psy7466 108 KKDEILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIE 153 (338)
Q Consensus 108 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 153 (338)
......|.|+.|+..|+...++. ..|.|+.||.....
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLDY 140 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEeee
Confidence 34567899999999998877774 26999999987543
No 103
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.88 E-value=1.7 Score=33.09 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=24.0
Q ss_pred ceecCcCcccccChhHHHHHHHcCCCceecccccccccChhhHH
Q psy7466 224 PYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLD 267 (338)
Q Consensus 224 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~~L~ 267 (338)
...|+.||+.|.-.. ..|..|+.||..|.-...+.
T Consensus 9 Kr~Cp~cg~kFYDLn---------k~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 9 KRICPNTGSKFYDLN---------RRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred cccCCCcCccccccC---------CCCccCCCcCCccCcchhhc
Confidence 457888888876542 46788888888876554333
No 104
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=74.83 E-value=1.8 Score=26.25 Aligned_cols=12 Identities=17% Similarity=0.911 Sum_probs=6.7
Q ss_pred eecccccccccC
Q psy7466 251 FQCTQCEKYYRS 262 (338)
Q Consensus 251 ~~C~~C~k~f~~ 262 (338)
|.|..||..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (42)
T PF09723_consen 6 YRCEECGHEFEV 17 (42)
T ss_pred EEeCCCCCEEEE
Confidence 556666655543
No 105
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=74.15 E-value=2.7 Score=27.43 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=4.7
Q ss_pred eeccccccc
Q psy7466 194 FKCAICFEY 202 (338)
Q Consensus 194 ~~C~~C~~~ 202 (338)
|.|+.||..
T Consensus 26 F~CPnCG~~ 34 (59)
T PRK14890 26 FLCPNCGEV 34 (59)
T ss_pred eeCCCCCCe
Confidence 555555544
No 106
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=73.96 E-value=1.5 Score=36.07 Aligned_cols=31 Identities=23% Similarity=0.615 Sum_probs=16.7
Q ss_pred CceecCcCcccccChhHHHHHHHcCCCceecccccccc
Q psy7466 223 EPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYY 260 (338)
Q Consensus 223 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f 260 (338)
.-|.|+.|+..|+....+. ..|.|+.||...
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~-------~~F~Cp~Cg~~L 146 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME-------YGFRCPQCGEML 146 (178)
T ss_pred CEEECCCCCcEEeHHHHhh-------cCCcCCCCCCCC
Confidence 3466666666655554432 246666666443
No 107
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=73.83 E-value=2.6 Score=25.85 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=4.4
Q ss_pred eecccccccc
Q psy7466 194 FKCAICFEYF 203 (338)
Q Consensus 194 ~~C~~C~~~f 203 (338)
|.|..||..|
T Consensus 3 Y~C~~Cg~~~ 12 (44)
T smart00659 3 YICGECGREN 12 (44)
T ss_pred EECCCCCCEe
Confidence 4444444443
No 108
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.78 E-value=0.35 Score=47.50 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=46.4
Q ss_pred ccchhhHhhhcChHHHHHHHHHhcCCCccc-----cccccccccChhhHHHHHHHhhhhhhhhhhchhhhhhhhhccccc
Q psy7466 114 LMKALDEEMFKMDEENNKEMERISQGLEYQ-----CSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQ 188 (338)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-----C~~C~~~f~~~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h 188 (338)
-.|+.|-+.+.... .+.|. |..||-.|+-...|-.- +..
T Consensus 102 a~C~~Cl~Ei~dp~-----------~rrY~YPF~~CT~CGPRfTIi~alPYD-------------------------R~n 145 (750)
T COG0068 102 ATCEDCLEEIFDPN-----------SRRYLYPFINCTNCGPRFTIIEALPYD-------------------------REN 145 (750)
T ss_pred hhhHHHHHHhcCCC-----------CcceeccccccCCCCcceeeeccCCCC-------------------------ccc
Confidence 46888876554432 23344 77788888776665443 233
Q ss_pred CCCcce-eccccccccCChHHHHHHHhhhccCCCCCceecCcCccc
Q psy7466 189 SGRSSF-KCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLC 233 (338)
Q Consensus 189 ~~~~~~-~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~ 233 (338)
+.-..| -|+.|.+.|....+- +.|. .|..|+.||-.
T Consensus 146 TsM~~F~lC~~C~~EY~dP~nR-----RfHA----Qp~aCp~CGP~ 182 (750)
T COG0068 146 TSMADFPLCPFCDKEYKDPLNR-----RFHA----QPIACPKCGPH 182 (750)
T ss_pred CccccCcCCHHHHHHhcCcccc-----cccc----ccccCcccCCC
Confidence 333334 488888888877663 3443 47888888864
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=73.13 E-value=2.3 Score=42.90 Aligned_cols=11 Identities=18% Similarity=-0.091 Sum_probs=7.1
Q ss_pred cccchhhHhhh
Q psy7466 113 LLMKALDEEMF 123 (338)
Q Consensus 113 ~~~C~~C~~~f 123 (338)
...|..||..+
T Consensus 435 ~l~C~~Cg~v~ 445 (730)
T COG1198 435 LLLCRDCGYIA 445 (730)
T ss_pred eeecccCCCcc
Confidence 34677777765
No 110
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=72.97 E-value=6 Score=35.60 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=17.0
Q ss_pred cccccccccccChhhHHHHH
Q psy7466 142 YQCSVCSQVFIEKKNLSKHF 161 (338)
Q Consensus 142 ~~C~~C~~~f~~~~~L~~H~ 161 (338)
+-|+.|++.|....-+..|+
T Consensus 239 ~YC~~C~r~f~~~~VFe~Hl 258 (470)
T COG5188 239 VYCVKCGREFSRSKVFEYHL 258 (470)
T ss_pred eeeHhhhhHhhhhHHHHHHH
Confidence 67888999888888888887
No 111
>KOG1280|consensus
Probab=72.55 E-value=2.7 Score=37.73 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=27.6
Q ss_pred ceecccccccccChhhHHHHhhccCCCCCCccccCCCC
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKP 287 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~ 287 (338)
.|.|++|+..-.+...|..|+...|+.......|+.|.
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~ 116 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA 116 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence 68888888877788888888888885444444555554
No 112
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=72.03 E-value=2.4 Score=26.71 Aligned_cols=25 Identities=32% Similarity=0.568 Sum_probs=17.4
Q ss_pred ceecccccccccCh-----hhHHHHhhccC
Q psy7466 250 VFQCTQCEKYYRSQ-----STLDVHVSKKH 274 (338)
Q Consensus 250 ~~~C~~C~k~f~~~-----~~L~~H~~~~H 274 (338)
.-.|..|++.+... ++|.+|+...|
T Consensus 18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred EEEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 35677777777655 58888865566
No 113
>PF14353 CpXC: CpXC protein
Probab=71.87 E-value=1.1 Score=34.61 Aligned_cols=23 Identities=4% Similarity=-0.220 Sum_probs=12.8
Q ss_pred ccccCCCCCCCCCCCCccccccc
Q psy7466 280 KVKRDIKPNTNILTVTPNRRSAR 302 (338)
Q Consensus 280 ~~~C~~C~~~f~~~~~l~~H~~~ 302 (338)
.|.|+.||..|.-...+.-|-..
T Consensus 38 ~~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 38 SFTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred EEECCCCCCceecCCCEEEEcCC
Confidence 45666666666555555555433
No 114
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=71.53 E-value=2.5 Score=34.18 Aligned_cols=24 Identities=33% Similarity=0.765 Sum_probs=16.3
Q ss_pred ceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcc
Q psy7466 193 SFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSL 232 (338)
Q Consensus 193 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~ 232 (338)
.|.|++||.+ |.+ +.|-+||+||.
T Consensus 134 ~~vC~vCGy~--------------~~g--e~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYT--------------HEG--EAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCc--------------ccC--CCCCcCCCCCC
Confidence 5788888743 334 56778888874
No 115
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=71.22 E-value=0.97 Score=36.14 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=8.0
Q ss_pred eecCcCcccccChh
Q psy7466 225 YQCSQCSLCFDQGS 238 (338)
Q Consensus 225 ~~C~~C~~~f~~~~ 238 (338)
++|+.||++|.+..
T Consensus 29 ~~c~~c~~~f~~~e 42 (154)
T PRK00464 29 RECLACGKRFTTFE 42 (154)
T ss_pred eeccccCCcceEeE
Confidence 55666666665543
No 116
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=70.94 E-value=2.6 Score=34.72 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=8.4
Q ss_pred CccccccccccccChh
Q psy7466 140 LEYQCSVCSQVFIEKK 155 (338)
Q Consensus 140 ~~~~C~~C~~~f~~~~ 155 (338)
.-|.|+.|+..|....
T Consensus 116 ~~Y~Cp~C~~rytf~e 131 (178)
T PRK06266 116 MFFFCPNCHIRFTFDE 131 (178)
T ss_pred CEEECCCCCcEEeHHH
Confidence 3455666655554443
No 117
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=69.99 E-value=1.3 Score=26.47 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=4.5
Q ss_pred eecccccccc
Q psy7466 194 FKCAICFEYF 203 (338)
Q Consensus 194 ~~C~~C~~~f 203 (338)
|.|..||..|
T Consensus 6 y~C~~Cg~~f 15 (41)
T smart00834 6 YRCEDCGHTF 15 (41)
T ss_pred EEcCCCCCEE
Confidence 4444444444
No 118
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=68.17 E-value=1.5 Score=27.84 Aligned_cols=11 Identities=27% Similarity=0.944 Sum_probs=4.9
Q ss_pred eeccccccccC
Q psy7466 194 FKCAICFEYFS 204 (338)
Q Consensus 194 ~~C~~C~~~f~ 204 (338)
|+|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 44444444443
No 119
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=65.97 E-value=4.7 Score=21.57 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=14.5
Q ss_pred cccccccccccChhhHHHHH
Q psy7466 142 YQCSVCSQVFIEKKNLSKHF 161 (338)
Q Consensus 142 ~~C~~C~~~f~~~~~L~~H~ 161 (338)
..|++|++.+ ....+..|+
T Consensus 2 v~CPiC~~~v-~~~~in~HL 20 (26)
T smart00734 2 VQCPVCFREV-PENLINSHL 20 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHH
Confidence 3688898888 567777886
No 120
>KOG2807|consensus
Probab=65.93 E-value=8.4 Score=34.41 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=22.2
Q ss_pred CceecccccccccChhhHHHHhhccCCCCCCccccCCCC
Q psy7466 249 EVFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKP 287 (338)
Q Consensus 249 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~ 287 (338)
..|.|..|...|-.--..-.| ...| .|+.|.
T Consensus 344 ~~y~C~~Ck~~FCldCDv~iH-esLh-------~CpgCe 374 (378)
T KOG2807|consen 344 GRYRCESCKNVFCLDCDVFIH-ESLH-------NCPGCE 374 (378)
T ss_pred CcEEchhccceeeccchHHHH-hhhh-------cCCCcC
Confidence 357788888887777777777 6666 566665
No 121
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=65.64 E-value=3.5 Score=25.86 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=4.7
Q ss_pred eecccccccc
Q psy7466 194 FKCAICFEYF 203 (338)
Q Consensus 194 ~~C~~C~~~f 203 (338)
|.|..||+.|
T Consensus 7 Y~C~~Cg~~~ 16 (49)
T COG1996 7 YKCARCGREV 16 (49)
T ss_pred EEhhhcCCee
Confidence 4444444444
No 122
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=65.58 E-value=1 Score=44.41 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=26.6
Q ss_pred cchhhHhhhcChHHHHHHHHHhcCCCc-cccccccccccChhhHHHHH
Q psy7466 115 MKALDEEMFKMDEENNKEMERISQGLE-YQCSVCSQVFIEKKNLSKHF 161 (338)
Q Consensus 115 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~ 161 (338)
.|..||-.|+-...|---.. .+.-.. -.|+.|.+.+.+..+-+-|-
T Consensus 125 ~CT~CGPRfTIi~alPYDR~-nTsM~~F~lC~~C~~EY~dP~nRRfHA 171 (750)
T COG0068 125 NCTNCGPRFTIIEALPYDRE-NTSMADFPLCPFCDKEYKDPLNRRFHA 171 (750)
T ss_pred ccCCCCcceeeeccCCCCcc-cCccccCcCCHHHHHHhcCcccccccc
Confidence 49999988876544311100 111111 25888988887777666663
No 123
>PF12907 zf-met2: Zinc-binding
Probab=65.10 E-value=4.5 Score=24.21 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=21.1
Q ss_pred eecccccccc---cChhhHHHHhhccCCCCCCcccc
Q psy7466 251 FQCTQCEKYY---RSQSTLDVHVSKKHPAGTGKVKR 283 (338)
Q Consensus 251 ~~C~~C~k~f---~~~~~L~~H~~~~H~~~~~~~~C 283 (338)
+.|.+|-.+| .+...|..|....| .....-.|
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKH-pK~~~~~C 36 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKH-PKNTFEEC 36 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccC-CCCCHHHc
Confidence 5788888555 45567899988888 44333333
No 124
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=65.09 E-value=3.9 Score=23.17 Aligned_cols=6 Identities=33% Similarity=1.497 Sum_probs=2.5
Q ss_pred ecCcCc
Q psy7466 226 QCSQCS 231 (338)
Q Consensus 226 ~C~~C~ 231 (338)
.|+.||
T Consensus 19 rC~~CG 24 (32)
T PF03604_consen 19 RCPECG 24 (32)
T ss_dssp SBSSSS
T ss_pred ECCcCC
Confidence 444444
No 125
>KOG2807|consensus
Probab=64.16 E-value=5.8 Score=35.37 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=26.5
Q ss_pred cccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccChhhHHHH
Q psy7466 111 EILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKH 160 (338)
Q Consensus 111 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H 160 (338)
..=|.|+.|+...- ..|-.|++|+-+......|.+-
T Consensus 274 ~~Gy~CP~CkakvC--------------sLP~eCpiC~ltLVss~hLARS 309 (378)
T KOG2807|consen 274 GGGYFCPQCKAKVC--------------SLPIECPICSLTLVSSPHLARS 309 (378)
T ss_pred cCceeCCcccCeee--------------cCCccCCccceeEecchHHHHH
Confidence 34478998876542 3478999999998887777764
No 126
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=64.11 E-value=2.7 Score=37.09 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=29.0
Q ss_pred cceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHc
Q psy7466 192 SSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLE 246 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 246 (338)
+.-.|-.|.-.|..... |-.-.-.. ...|.|+.|...|-..-+.-.|...
T Consensus 361 ks~~Cf~CQ~~fp~~~~---~~~~~~~s--s~rY~Ce~CK~~FC~dCdvfiHe~L 410 (421)
T COG5151 361 KSTHCFVCQGPFPKPPV---SPFDESTS--SGRYQCELCKSTFCSDCDVFIHETL 410 (421)
T ss_pred CCccceeccCCCCCCCC---Cccccccc--ccceechhhhhhhhhhhHHHHHHHH
Confidence 33457777777765422 11011111 3468888888888887777777443
No 127
>PF14353 CpXC: CpXC protein
Probab=63.92 E-value=3.3 Score=31.95 Aligned_cols=20 Identities=30% Similarity=0.658 Sum_probs=13.3
Q ss_pred ceecccccccccChhhHHHH
Q psy7466 250 VFQCTQCEKYYRSQSTLDVH 269 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H 269 (338)
.|.|+.||..|.-...+..|
T Consensus 38 ~~~CP~Cg~~~~~~~p~lY~ 57 (128)
T PF14353_consen 38 SFTCPSCGHKFRLEYPLLYH 57 (128)
T ss_pred EEECCCCCCceecCCCEEEE
Confidence 46777777777666666555
No 128
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=63.87 E-value=4 Score=34.54 Aligned_cols=27 Identities=22% Similarity=0.648 Sum_probs=19.9
Q ss_pred CCceecccccccccChhhHHHHhhccC
Q psy7466 248 HEVFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 248 ~~~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
+..|.|.+|+|.|.-..-...||...|
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH 101 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIFNKH 101 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred CCEECCCCCCcccCChHHHHHHHhhcC
Confidence 346888888888888888888888888
No 129
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=61.27 E-value=8 Score=33.35 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=9.5
Q ss_pred cccCCCcceeccccccc
Q psy7466 186 FTQSGRSSFKCAICFEY 202 (338)
Q Consensus 186 ~~h~~~~~~~C~~C~~~ 202 (338)
....|.+.|+|.+|+..
T Consensus 135 vw~hGGrif~CsfC~~f 151 (314)
T PF06524_consen 135 VWDHGGRIFKCSFCDNF 151 (314)
T ss_pred cccCCCeEEEeecCCCe
Confidence 34445556666666643
No 130
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.94 E-value=5.9 Score=38.48 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=5.4
Q ss_pred cceecccccc
Q psy7466 192 SSFKCAICFE 201 (338)
Q Consensus 192 ~~~~C~~C~~ 201 (338)
....|.+||.
T Consensus 239 ~~l~Ch~Cg~ 248 (505)
T TIGR00595 239 GKLRCHYCGY 248 (505)
T ss_pred CeEEcCCCcC
Confidence 3455666653
No 131
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=60.29 E-value=3.4 Score=25.73 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=10.0
Q ss_pred eeccccccccCChH
Q psy7466 194 FKCAICFEYFSLLE 207 (338)
Q Consensus 194 ~~C~~C~~~f~~~~ 207 (338)
|+|.+||..|.-..
T Consensus 2 y~C~~CgyvYd~~~ 15 (47)
T PF00301_consen 2 YQCPVCGYVYDPEK 15 (47)
T ss_dssp EEETTTSBEEETTT
T ss_pred cCCCCCCEEEcCCc
Confidence 67888887776543
No 132
>PRK14873 primosome assembly protein PriA; Provisional
Probab=59.81 E-value=5.8 Score=39.85 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=11.2
Q ss_pred ccceeeeeeccCcchhhhh
Q psy7466 14 SRSELICVRKEGEEKEEER 32 (338)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (338)
++=-+|.|.+|.|...-++
T Consensus 256 ~~LgLIIvdEEhd~sykq~ 274 (665)
T PRK14873 256 EDLGLVAIWDDGDDLLAEP 274 (665)
T ss_pred CCCCEEEEEcCCchhhcCC
Confidence 3445677777766655433
No 133
>PF15269 zf-C2H2_7: Zinc-finger
Probab=57.79 E-value=7.4 Score=23.66 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=15.9
Q ss_pred eecCcCcccccChhHHHHHHHc
Q psy7466 225 YQCSQCSLCFDQGSLLKAHVLE 246 (338)
Q Consensus 225 ~~C~~C~~~f~~~~~l~~H~~~ 246 (338)
|+|-.|..+...++.|-.||+-
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 6677777777777777777654
No 134
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=57.59 E-value=2.1 Score=31.11 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=18.7
Q ss_pred CceecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCC
Q psy7466 249 EVFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNIL 292 (338)
Q Consensus 249 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~ 292 (338)
+.|.|+.||..-.....+..- .+.....|..||.+|..
T Consensus 21 k~FtCp~Cghe~vs~ctvkk~------~~~g~~~Cg~CGls~e~ 58 (104)
T COG4888 21 KTFTCPRCGHEKVSSCTVKKT------VNIGTAVCGNCGLSFEC 58 (104)
T ss_pred ceEecCccCCeeeeEEEEEec------CceeEEEcccCcceEEE
Confidence 346666666544443322211 23334567777766644
No 135
>KOG2071|consensus
Probab=57.09 E-value=9.8 Score=36.92 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=14.8
Q ss_pred CccccccccccccChhhHHHHHHHh
Q psy7466 140 LEYQCSVCSQVFIEKKNLSKHFFKC 164 (338)
Q Consensus 140 ~~~~C~~C~~~f~~~~~L~~H~~~h 164 (338)
.+.+|..||..|........||..|
T Consensus 417 ~pnqC~~CG~R~~~~ee~sk~md~H 441 (579)
T KOG2071|consen 417 SPNQCKSCGLRFDDSEERSKHMDIH 441 (579)
T ss_pred CcchhcccccccccchhhhhHhhhh
Confidence 3456666666666666666555544
No 136
>PF15269 zf-C2H2_7: Zinc-finger
Probab=56.14 E-value=7.7 Score=23.59 Aligned_cols=25 Identities=4% Similarity=-0.263 Sum_probs=17.6
Q ss_pred cccccchhhHhhhcChHHHHHHHHH
Q psy7466 111 EILLMKALDEEMFKMDEENNKEMER 135 (338)
Q Consensus 111 ~~~~~C~~C~~~f~~~~~l~~H~~~ 135 (338)
.-.|.|..|..+....+.|-.||+.
T Consensus 18 p~~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 18 PFKYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred CccceeecCCcccchHHHHHHHHHH
Confidence 3456777777777777777777764
No 137
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=55.09 E-value=7.6 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=7.7
Q ss_pred HHHHHHHc--CCCceeccc
Q psy7466 239 LLKAHVLE--KHEVFQCTQ 255 (338)
Q Consensus 239 ~l~~H~~~--~~~~~~C~~ 255 (338)
.|..|+.. ...+..|++
T Consensus 25 ~l~~H~~~~C~~~~v~C~~ 43 (60)
T PF02176_consen 25 ELDDHLENECPKRPVPCPY 43 (60)
T ss_dssp CHHHHHHTTSTTSEEE-SS
T ss_pred HHHHHHHccCCCCcEECCC
Confidence 45555552 344455555
No 138
>KOG2593|consensus
Probab=54.52 E-value=11 Score=35.15 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=18.1
Q ss_pred cCCCccccccccccccChhhHHH
Q psy7466 137 SQGLEYQCSVCSQVFIEKKNLSK 159 (338)
Q Consensus 137 ~~~~~~~C~~C~~~f~~~~~L~~ 159 (338)
+....|.|+.|.++|.....++.
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~L 146 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQL 146 (436)
T ss_pred cccccccCCccccchhhhHHHHh
Confidence 44567999999999987776655
No 139
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=54.34 E-value=5 Score=28.78 Aligned_cols=14 Identities=14% Similarity=-0.213 Sum_probs=7.6
Q ss_pred CccccCCCCCCCCC
Q psy7466 279 GKVKRDIKPNTNIL 292 (338)
Q Consensus 279 ~~~~C~~C~~~f~~ 292 (338)
..+.|..|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PTZ00255 53 GIWRCKGCKKTVAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 44556666655543
No 140
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=53.85 E-value=9.7 Score=32.29 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCCcceeccccccccCChHHHHHHHhhhccC
Q psy7466 189 SGRSSFKCAICFEYFSLLESLETHITRRHIG 219 (338)
Q Consensus 189 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~ 219 (338)
..+..|.|..|+|.|....-...|+...|..
T Consensus 73 ~~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 73 EDEDKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SSSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred HcCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 4556799999999999999999999888864
No 141
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=52.08 E-value=4.8 Score=28.89 Aligned_cols=14 Identities=7% Similarity=-0.365 Sum_probs=7.5
Q ss_pred CccccCCCCCCCCC
Q psy7466 279 GKVKRDIKPNTNIL 292 (338)
Q Consensus 279 ~~~~C~~C~~~f~~ 292 (338)
..+.|..|++.|.-
T Consensus 52 GIW~C~~C~~~~AG 65 (91)
T TIGR00280 52 GIWTCRKCGAKFAG 65 (91)
T ss_pred EEEEcCCCCCEEeC
Confidence 34555566555543
No 142
>KOG4124|consensus
Probab=51.26 E-value=2.8 Score=37.59 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=33.3
Q ss_pred ccccccchh--hHhhhcChHHH-----HHHHHHhcCCCccccccccccccChhhHHHHH
Q psy7466 110 DEILLMKAL--DEEMFKMDEEN-----NKEMERISQGLEYQCSVCSQVFIEKKNLSKHF 161 (338)
Q Consensus 110 ~~~~~~C~~--C~~~f~~~~~l-----~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~ 161 (338)
++.++.|.. |.+........ ..|+...+...||+| .|++...++..|+.|-
T Consensus 175 EE~~~S~~vp~~~~~~~~~Ns~~~~S~~~~~T~~t~~~p~k~-~~~~~~~T~~~l~~HS 232 (442)
T KOG4124|consen 175 EEYRVSVVVPAAAAAAAAANSSDMSSDEASSTAETTGTPKKM-PESLVMDTSSPLSDHS 232 (442)
T ss_pred ccccccccCchhhhhhhccccccccccccccccccccCCccC-cccccccccchhhhcc
Confidence 456666654 54444333222 334445556778999 5999999999998884
No 143
>KOG2593|consensus
Probab=51.16 E-value=8.5 Score=35.82 Aligned_cols=34 Identities=21% Similarity=0.505 Sum_probs=15.6
Q ss_pred ceecCcCcccccChhHHHHHHHcCCCceecccccc
Q psy7466 224 PYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEK 258 (338)
Q Consensus 224 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k 258 (338)
.|.|+.|++.|.....+..= -.....|.|..|+-
T Consensus 128 ~Y~Cp~C~kkyt~Lea~~L~-~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 128 GYVCPNCQKKYTSLEALQLL-DNETGEFHCENCGG 161 (436)
T ss_pred cccCCccccchhhhHHHHhh-cccCceEEEecCCC
Confidence 45566666555554433210 11233555655543
No 144
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=50.93 E-value=11 Score=34.08 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.9
Q ss_pred cceeccccccccCChHHHHHHHh
Q psy7466 192 SSFKCAICFEYFSLLESLETHIT 214 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~ 214 (338)
..+-|..|++.|.....+..|+.
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~ 259 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLE 259 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHh
Confidence 45789999999999999999973
No 145
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=50.55 E-value=18 Score=27.94 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=38.4
Q ss_pred CCceecCcCcccccChhHHHHHHHcCCCceecccccccc--cChhhHHHHhhccCCCCCCccccCCCCCCCCCCCC
Q psy7466 222 EEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYY--RSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVT 295 (338)
Q Consensus 222 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f--~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~~ 295 (338)
.+.|+|.+|..+......| +|-.| ||+.- .--..|..| -..| -+||.|.-+|.+...
T Consensus 78 ~~lYeCnIC~etS~ee~FL--------KPneC--CgY~iCn~Cya~LWK~-~~~y------pvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFL--------KPNEC--CGYSICNACYANLWKF-CNLY------PVCPVCKTSFKSSSS 136 (140)
T ss_pred CCceeccCcccccchhhcC--------Ccccc--cchHHHHHHHHHHHHH-cccC------CCCCccccccccccc
Confidence 5789999998876655432 35455 33322 123568888 6667 489999999988754
No 146
>PRK05580 primosome assembly protein PriA; Validated
Probab=50.42 E-value=11 Score=38.17 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=5.5
Q ss_pred ceeeeeeccCc
Q psy7466 16 SELICVRKEGE 26 (338)
Q Consensus 16 ~~~~~~~~~~~ 26 (338)
=.+|.+.++.+
T Consensus 259 l~liVvDEeh~ 269 (679)
T PRK05580 259 LGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCc
Confidence 34555555443
No 147
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=50.12 E-value=4.5 Score=25.59 Aligned_cols=13 Identities=23% Similarity=0.963 Sum_probs=9.2
Q ss_pred cccccccccccCh
Q psy7466 142 YQCSVCSQVFIEK 154 (338)
Q Consensus 142 ~~C~~C~~~f~~~ 154 (338)
|+|..||..+.-.
T Consensus 2 y~C~~CgyiYd~~ 14 (50)
T cd00730 2 YECRICGYIYDPA 14 (50)
T ss_pred cCCCCCCeEECCC
Confidence 6788888776543
No 148
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=49.04 E-value=11 Score=29.40 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=16.1
Q ss_pred ccccccchhhHhhhcChHHHHHHHHHhcCCC
Q psy7466 110 DEILLMKALDEEMFKMDEENNKEMERISQGL 140 (338)
Q Consensus 110 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 140 (338)
......|-+||+.|.. |.+|+..|+|..
T Consensus 69 ~~d~i~clecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 69 TPDYIICLECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp -SS-EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred ccCeeEEccCCcccch---HHHHHHHccCCC
Confidence 4566789999998865 488888887654
No 149
>KOG4124|consensus
Probab=48.51 E-value=7.4 Score=35.03 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=41.5
Q ss_pred Cceeccc--ccccccChhhHHHHhhccCC-----------------CCCCccccCCCCCCCCCCCCcccccccCCC
Q psy7466 249 EVFQCTQ--CEKYYRSQSTLDVHVSKKHP-----------------AGTGKVKRDIKPNTNILTVTPNRRSARNDS 305 (338)
Q Consensus 249 ~~~~C~~--C~k~f~~~~~L~~H~~~~H~-----------------~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~ 305 (338)
++|.|++ |.+.+.....|..|....|. ...++|.|++|.+++.....|.-|+...|.
T Consensus 348 ~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~~~~~ 423 (442)
T KOG4124|consen 348 KPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRTHSHL 423 (442)
T ss_pred CCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceeehhhh
Confidence 4677765 77887777777777444551 134789999999999998888888754443
No 150
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=48.28 E-value=7.2 Score=21.71 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=12.5
Q ss_pred cchhhHhhhcChHHHHHHHHHhcCCCcccccccccc
Q psy7466 115 MKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQV 150 (338)
Q Consensus 115 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 150 (338)
.|+.|+..+.. .....|.|+.|+..
T Consensus 4 ~Cp~C~se~~y-----------~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTY-----------EDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----E-----------E-SSSEEETTTTEE
T ss_pred CCCCCCCccee-----------ccCCEEeCCccccc
Confidence 58888877654 45557889998754
No 151
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=48.02 E-value=11 Score=35.75 Aligned_cols=28 Identities=29% Similarity=0.729 Sum_probs=23.3
Q ss_pred ceecccccccccChhhHHHHhhccCCCC
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKHPAG 277 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~ 277 (338)
-+.|+.|.+.|.....+..|+...|..+
T Consensus 57 FWiCp~CskkF~d~~~~~~H~~~eH~~~ 84 (466)
T PF04780_consen 57 FWICPRCSKKFSDAESCLSHMEQEHPAG 84 (466)
T ss_pred EeeCCcccceeCCHHHHHHHHHHhhhhh
Confidence 4789999999999999999988889433
No 152
>KOG4167|consensus
Probab=47.94 E-value=5.3 Score=39.54 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=23.2
Q ss_pred CccccccccccccChhhHHHHHHHh
Q psy7466 140 LEYQCSVCSQVFIEKKNLSKHFFKC 164 (338)
Q Consensus 140 ~~~~C~~C~~~f~~~~~L~~H~~~h 164 (338)
.-|.|..|++.|....+++.||++|
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~H 815 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTH 815 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHH
Confidence 3599999999999999999999988
No 153
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.72 E-value=9.7 Score=28.15 Aligned_cols=10 Identities=0% Similarity=-0.024 Sum_probs=3.9
Q ss_pred cccCCCCCCC
Q psy7466 281 VKRDIKPNTN 290 (338)
Q Consensus 281 ~~C~~C~~~f 290 (338)
..|++||++|
T Consensus 27 iVsPytG~s~ 36 (129)
T COG4530 27 IVSPYTGKSY 36 (129)
T ss_pred cccCcccccc
Confidence 3333333333
No 154
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=45.76 E-value=10 Score=19.91 Aligned_cols=8 Identities=0% Similarity=-0.463 Sum_probs=4.1
Q ss_pred ccccCCCC
Q psy7466 280 KVKRDIKP 287 (338)
Q Consensus 280 ~~~C~~C~ 287 (338)
.|.|+.||
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 45555554
No 155
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=45.73 E-value=6.7 Score=28.12 Aligned_cols=14 Identities=7% Similarity=-0.339 Sum_probs=7.1
Q ss_pred CccccCCCCCCCCC
Q psy7466 279 GKVKRDIKPNTNIL 292 (338)
Q Consensus 279 ~~~~C~~C~~~f~~ 292 (338)
..+.|..|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PRK03976 53 GIWECRKCGAKFAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 34555555555543
No 156
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=44.91 E-value=22 Score=38.03 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=6.7
Q ss_pred ceecccccccc
Q psy7466 250 VFQCTQCEKYY 260 (338)
Q Consensus 250 ~~~C~~C~k~f 260 (338)
+|.|+.||...
T Consensus 692 vy~CPsCGaev 702 (1337)
T PRK14714 692 VYVCPDCGAEV 702 (1337)
T ss_pred ceeCccCCCcc
Confidence 45666666643
No 157
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=44.76 E-value=16 Score=31.66 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=18.0
Q ss_pred CCCceecccccccccChhhHHHHhhccC
Q psy7466 247 KHEVFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 247 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
..+++.|+.||+....-..|..- .+.|
T Consensus 206 k~k~~PCPKCg~et~eTkdLSmS-tR~h 232 (314)
T PF06524_consen 206 KGKPIPCPKCGYETQETKDLSMS-TRSH 232 (314)
T ss_pred cCCCCCCCCCCCcccccccceee-eecc
Confidence 34678888888777766666655 4445
No 158
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=44.73 E-value=11 Score=29.55 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=6.9
Q ss_pred ceecccccccccC
Q psy7466 250 VFQCTQCEKYYRS 262 (338)
Q Consensus 250 ~~~C~~C~k~f~~ 262 (338)
.+.|..||..|..
T Consensus 70 ~~~C~~CG~~~~~ 82 (135)
T PRK03824 70 VLKCRNCGNEWSL 82 (135)
T ss_pred EEECCCCCCEEec
Confidence 3555556555543
No 159
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=44.01 E-value=14 Score=27.04 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=5.9
Q ss_pred eecccccccccC
Q psy7466 251 FQCTQCEKYYRS 262 (338)
Q Consensus 251 ~~C~~C~k~f~~ 262 (338)
++|..||..|.+
T Consensus 3 H~CtrCG~vf~~ 14 (112)
T COG3364 3 HQCTRCGEVFDD 14 (112)
T ss_pred ceeccccccccc
Confidence 445555555544
No 160
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=43.09 E-value=8.7 Score=27.56 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=6.4
Q ss_pred ceecCcCccccc
Q psy7466 224 PYQCSQCSLCFD 235 (338)
Q Consensus 224 ~~~C~~C~~~f~ 235 (338)
-|.|..|++.|.
T Consensus 53 IW~C~~C~~~~A 64 (90)
T PF01780_consen 53 IWKCKKCGKKFA 64 (90)
T ss_dssp EEEETTTTEEEE
T ss_pred EeecCCCCCEEe
Confidence 455555555543
No 161
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=42.35 E-value=11 Score=38.06 Aligned_cols=14 Identities=0% Similarity=-0.391 Sum_probs=9.0
Q ss_pred CCCCccccCCCCCC
Q psy7466 276 AGTGKVKRDIKPNT 289 (338)
Q Consensus 276 ~~~~~~~C~~C~~~ 289 (338)
....|..|+.||-.
T Consensus 471 ~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 471 QEPIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCCCC
Confidence 34566777777754
No 162
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=41.37 E-value=14 Score=21.49 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=6.8
Q ss_pred eeccccccccC
Q psy7466 194 FKCAICFEYFS 204 (338)
Q Consensus 194 ~~C~~C~~~f~ 204 (338)
..|+.||.+|.
T Consensus 2 r~C~~Cg~~Yh 12 (36)
T PF05191_consen 2 RICPKCGRIYH 12 (36)
T ss_dssp EEETTTTEEEE
T ss_pred cCcCCCCCccc
Confidence 35666776664
No 163
>KOG1280|consensus
Probab=41.26 E-value=25 Score=31.80 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=29.8
Q ss_pred CCcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcc
Q psy7466 190 GRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSL 232 (338)
Q Consensus 190 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~ 232 (338)
....|.|++|+..-.+...|..|....|.... ....|++|+.
T Consensus 76 ~~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~-~~~icp~c~~ 117 (381)
T KOG1280|consen 76 DPQSFTCPYCGIMGFTERQFGTHVLSQHPEAS-TSVICPLCAA 117 (381)
T ss_pred ccccccCCcccccccchhHHHHHhhhcCcccC-cceeeecccc
Confidence 34468899999888888889999877776521 3345666653
No 164
>PRK04023 DNA polymerase II large subunit; Validated
Probab=41.11 E-value=17 Score=37.85 Aligned_cols=9 Identities=22% Similarity=0.818 Sum_probs=4.7
Q ss_pred ccccccccc
Q psy7466 142 YQCSVCSQV 150 (338)
Q Consensus 142 ~~C~~C~~~ 150 (338)
..|+.||..
T Consensus 627 RfCpsCG~~ 635 (1121)
T PRK04023 627 RKCPSCGKE 635 (1121)
T ss_pred ccCCCCCCc
Confidence 455555543
No 165
>KOG0717|consensus
Probab=40.89 E-value=40 Score=31.92 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=12.3
Q ss_pred ccchhhHhhhcChHHHHHHHH
Q psy7466 114 LMKALDEEMFKMDEENNKEME 134 (338)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~ 134 (338)
..|..|+.+|.++..|-.|++
T Consensus 461 ~~C~tCr~~FdSRnkLF~Hlk 481 (508)
T KOG0717|consen 461 ISCTTCRESFDSRNKLFAHLK 481 (508)
T ss_pred HhhhhhhhhccchhHHHHHhh
Confidence 456666666666666666644
No 166
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=40.72 E-value=5.8 Score=36.15 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=15.7
Q ss_pred ceecCcCcccccChhHH---HHHHHc----CCCceecccccccccCh
Q psy7466 224 PYQCSQCSLCFDQGSLL---KAHVLE----KHEVFQCTQCEKYYRSQ 263 (338)
Q Consensus 224 ~~~C~~C~~~f~~~~~l---~~H~~~----~~~~~~C~~C~k~f~~~ 263 (338)
.|.|..|.+.+...... ..|... -.+-|.|..|++.+.+.
T Consensus 252 av~C~~C~yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt~sl 298 (344)
T PF09332_consen 252 AVTCKQCKYTAFKPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRTISL 298 (344)
T ss_dssp EEEETTT--EESS--HHHHHTT--EEEEEEE-EEEE-T-TS-EEEES
T ss_pred EEEcCCCCCcccCcchhHHhcCCceEEeeeeeeeEECCCCCCeeeec
Confidence 36677777664444332 123211 22347777777765543
No 167
>PRK04023 DNA polymerase II large subunit; Validated
Probab=40.66 E-value=29 Score=36.24 Aligned_cols=13 Identities=0% Similarity=-0.256 Sum_probs=7.5
Q ss_pred ccccCCCCCCCCC
Q psy7466 280 KVKRDIKPNTNIL 292 (338)
Q Consensus 280 ~~~C~~C~~~f~~ 292 (338)
+|.|+.||..-..
T Consensus 663 ~y~CPKCG~El~~ 675 (1121)
T PRK04023 663 EDECEKCGREPTP 675 (1121)
T ss_pred CCcCCCCCCCCCc
Confidence 3567777755433
No 168
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=39.75 E-value=13 Score=23.90 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=4.4
Q ss_pred eecccccccc
Q psy7466 194 FKCAICFEYF 203 (338)
Q Consensus 194 ~~C~~C~~~f 203 (338)
|.|+.||..+
T Consensus 3 ~~CP~CG~~i 12 (54)
T TIGR01206 3 FECPDCGAEI 12 (54)
T ss_pred cCCCCCCCEE
Confidence 3444444433
No 169
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=39.66 E-value=22 Score=22.37 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=5.9
Q ss_pred CceecCcCccccc
Q psy7466 223 EPYQCSQCSLCFD 235 (338)
Q Consensus 223 ~~~~C~~C~~~f~ 235 (338)
+.+.|..||..|.
T Consensus 3 k~l~C~dCg~~Fv 15 (49)
T PF13451_consen 3 KTLTCKDCGAEFV 15 (49)
T ss_pred eeEEcccCCCeEE
Confidence 3444444444443
No 170
>KOG1842|consensus
Probab=38.81 E-value=16 Score=34.17 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.1
Q ss_pred ceecccccccccChhhHHHHhhccC
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
.|.|++|...|.+...|..|+...|
T Consensus 15 gflCPiC~~dl~~~~~L~~H~d~eH 39 (505)
T KOG1842|consen 15 GFLCPICLLDLPNLSALNDHLDVEH 39 (505)
T ss_pred cccCchHhhhhhhHHHHHHHHhhhc
Confidence 4777777777777777777777777
No 171
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=38.77 E-value=22 Score=21.79 Aligned_cols=8 Identities=25% Similarity=1.103 Sum_probs=3.8
Q ss_pred eecCcCcc
Q psy7466 225 YQCSQCSL 232 (338)
Q Consensus 225 ~~C~~C~~ 232 (338)
+.|+.||.
T Consensus 19 ~~CP~Cg~ 26 (46)
T PF12760_consen 19 FVCPHCGS 26 (46)
T ss_pred CCCCCCCC
Confidence 44555543
No 172
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=38.57 E-value=6.3 Score=23.56 Aligned_cols=10 Identities=0% Similarity=-0.466 Sum_probs=4.8
Q ss_pred cccCCCCCCC
Q psy7466 281 VKRDIKPNTN 290 (338)
Q Consensus 281 ~~C~~C~~~f 290 (338)
|.|..|+..|
T Consensus 29 y~C~~C~~~w 38 (40)
T smart00440 29 YVCTKCGHRW 38 (40)
T ss_pred EEeCCCCCEe
Confidence 4555555443
No 173
>PRK14873 primosome assembly protein PriA; Provisional
Probab=38.43 E-value=22 Score=35.85 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=25.8
Q ss_pred eccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcCCCceeccccccc
Q psy7466 195 KCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKY 259 (338)
Q Consensus 195 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~ 259 (338)
.|..||..+.-.. -...+ ..|.. .....|.+||+. ..++.|+.||..
T Consensus 385 ~C~~Cg~~~~C~~-C~~~L-~~h~~--~~~l~Ch~CG~~--------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 385 ACARCRTPARCRH-CTGPL-GLPSA--GGTPRCRWCGRA--------------APDWRCPRCGSD 431 (665)
T ss_pred EhhhCcCeeECCC-CCCce-eEecC--CCeeECCCCcCC--------------CcCccCCCCcCC
Confidence 5666666554321 01112 33433 456788888853 126688888764
No 174
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.29 E-value=7.3 Score=32.99 Aligned_cols=18 Identities=17% Similarity=0.540 Sum_probs=9.5
Q ss_pred CceecCcCcccccChhHH
Q psy7466 223 EPYQCSQCSLCFDQGSLL 240 (338)
Q Consensus 223 ~~~~C~~C~~~f~~~~~l 240 (338)
+.+.|++|+..|.....+
T Consensus 18 k~ieCPvC~tkFkkeev~ 35 (267)
T COG1655 18 KTIECPVCNTKFKKEEVK 35 (267)
T ss_pred ceeccCcccchhhhhhee
Confidence 445566666555554433
No 175
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.91 E-value=13 Score=36.07 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=27.3
Q ss_pred eccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcCCCceeccccccc
Q psy7466 195 KCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKY 259 (338)
Q Consensus 195 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~ 259 (338)
.|..||....-.. -...+ ..|.. .....|.+||.... -|..|+.||..
T Consensus 215 ~C~~Cg~~~~C~~-C~~~l-~~h~~--~~~l~Ch~Cg~~~~-------------~~~~Cp~C~s~ 262 (505)
T TIGR00595 215 LCRSCGYILCCPN-CDVSL-TYHKK--EGKLRCHYCGYQEP-------------IPKTCPQCGSE 262 (505)
T ss_pred EhhhCcCccCCCC-CCCce-EEecC--CCeEEcCCCcCcCC-------------CCCCCCCCCCC
Confidence 5666665554221 11123 44544 55778999986532 35688888753
No 176
>KOG3408|consensus
Probab=37.40 E-value=21 Score=27.00 Aligned_cols=25 Identities=24% Similarity=0.660 Sum_probs=19.9
Q ss_pred CCCceecccccccccChhhHHHHhh
Q psy7466 247 KHEVFQCTQCEKYYRSQSTLDVHVS 271 (338)
Q Consensus 247 ~~~~~~C~~C~k~f~~~~~L~~H~~ 271 (338)
|...|.|-.|.+-|.+...|..|.+
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~k 78 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFK 78 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHh
Confidence 4456888888888888888888854
No 177
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=37.21 E-value=33 Score=26.57 Aligned_cols=14 Identities=14% Similarity=-0.059 Sum_probs=6.5
Q ss_pred CccccCCCCCCCCC
Q psy7466 279 GKVKRDIKPNTNIL 292 (338)
Q Consensus 279 ~~~~C~~C~~~f~~ 292 (338)
..|.|..|++.|..
T Consensus 52 qRyrC~~C~~tf~~ 65 (129)
T COG3677 52 QRYKCKSCGSTFTV 65 (129)
T ss_pred cccccCCcCcceee
Confidence 33455555544443
No 178
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=37.11 E-value=18 Score=22.79 Aligned_cols=10 Identities=20% Similarity=0.973 Sum_probs=4.4
Q ss_pred ceecCcCccc
Q psy7466 224 PYQCSQCSLC 233 (338)
Q Consensus 224 ~~~C~~C~~~ 233 (338)
.+.|..||..
T Consensus 37 r~~C~~Cgyt 46 (50)
T PRK00432 37 RWHCGKCGYT 46 (50)
T ss_pred cEECCCcCCE
Confidence 3444444443
No 179
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.52 E-value=20 Score=24.04 Aligned_cols=13 Identities=23% Similarity=0.859 Sum_probs=7.2
Q ss_pred CceecCcCccccc
Q psy7466 223 EPYQCSQCSLCFD 235 (338)
Q Consensus 223 ~~~~C~~C~~~f~ 235 (338)
+.|.|+.||..+.
T Consensus 45 r~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 45 RVFTCPNCGFEMD 57 (69)
T ss_pred ceEEcCCCCCEEC
Confidence 4566666665543
No 180
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=36.24 E-value=34 Score=29.49 Aligned_cols=59 Identities=20% Similarity=0.492 Sum_probs=36.9
Q ss_pred CcceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcCCCceecccccccccCh
Q psy7466 191 RSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQ 263 (338)
Q Consensus 191 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~ 263 (338)
...|.|..|....- .........-.|..|.+.|.-... -...|...|.|+.|+..|...
T Consensus 110 drqFaC~~Cd~~Ww-----------Rrvp~rKeVSRCr~C~~rYDPVP~---dkmwG~aef~C~~C~h~F~G~ 168 (278)
T PF15135_consen 110 DRQFACSSCDHMWW-----------RRVPQRKEVSRCRKCRKRYDPVPC---DKMWGIAEFHCPKCRHNFRGF 168 (278)
T ss_pred ceeeeccccchHHH-----------hccCcccccccccccccccCCCcc---ccccceeeeecccccccchhh
Confidence 46789999965421 111111334578888888765431 112366789999999999854
No 181
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=35.50 E-value=26 Score=33.46 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=25.1
Q ss_pred cceeccccccccCChHHHHHHHhhhccC
Q psy7466 192 SSFKCAICFEYFSLLESLETHITRRHIG 219 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~ 219 (338)
.-+.|+.|.+.|.+...+..|+...|.+
T Consensus 56 rFWiCp~CskkF~d~~~~~~H~~~eH~~ 83 (466)
T PF04780_consen 56 RFWICPRCSKKFSDAESCLSHMEQEHPA 83 (466)
T ss_pred eEeeCCcccceeCCHHHHHHHHHHhhhh
Confidence 3478999999999999999999888976
No 182
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=35.23 E-value=14 Score=27.12 Aligned_cols=13 Identities=0% Similarity=-0.286 Sum_probs=9.1
Q ss_pred cccCCCCCCCCCC
Q psy7466 281 VKRDIKPNTNILT 293 (338)
Q Consensus 281 ~~C~~C~~~f~~~ 293 (338)
..|+.||..|...
T Consensus 43 ~~C~~CG~y~~~~ 55 (99)
T PRK14892 43 ITCGNCGLYTEFE 55 (99)
T ss_pred EECCCCCCccCEE
Confidence 6788888776653
No 183
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=34.59 E-value=30 Score=21.58 Aligned_cols=16 Identities=0% Similarity=-0.201 Sum_probs=10.7
Q ss_pred ccccCCCCCCCCCCCC
Q psy7466 280 KVKRDIKPNTNILTVT 295 (338)
Q Consensus 280 ~~~C~~C~~~f~~~~~ 295 (338)
.|.|+.||+.+.-...
T Consensus 20 ~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 20 RFVCRKCGYEEPIEQK 35 (52)
T ss_pred EEECCcCCCeEECCCc
Confidence 5778888876655443
No 184
>KOG2907|consensus
Probab=33.71 E-value=25 Score=26.25 Aligned_cols=11 Identities=18% Similarity=0.957 Sum_probs=5.6
Q ss_pred eeccccccccc
Q psy7466 251 FQCTQCEKYYR 261 (338)
Q Consensus 251 ~~C~~C~k~f~ 261 (338)
|.|+.|++.|.
T Consensus 103 YTC~kC~~k~~ 113 (116)
T KOG2907|consen 103 YTCPKCKYKFT 113 (116)
T ss_pred EEcCccceeee
Confidence 45555555543
No 185
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.17 E-value=22 Score=26.83 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=2.7
Q ss_pred eeccccc
Q psy7466 194 FKCAICF 200 (338)
Q Consensus 194 ~~C~~C~ 200 (338)
+.|..||
T Consensus 71 ~~C~~Cg 77 (113)
T PRK12380 71 AWCWDCS 77 (113)
T ss_pred EEcccCC
Confidence 3344443
No 186
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=32.96 E-value=21 Score=21.56 Aligned_cols=9 Identities=0% Similarity=-0.433 Sum_probs=3.9
Q ss_pred ccccCCCCC
Q psy7466 280 KVKRDIKPN 288 (338)
Q Consensus 280 ~~~C~~C~~ 288 (338)
.+.|..||.
T Consensus 19 ~~vC~~CG~ 27 (43)
T PF08271_consen 19 ELVCPNCGL 27 (43)
T ss_dssp EEEETTT-B
T ss_pred eEECCCCCC
Confidence 345555553
No 187
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=32.89 E-value=39 Score=26.15 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=20.9
Q ss_pred cccccchhhHhhhcChHHHHHHHHHhcCCCc
Q psy7466 111 EILLMKALDEEMFKMDEENNKEMERISQGLE 141 (338)
Q Consensus 111 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 141 (338)
...+.|-.+|+.|. .|.+|+.+|.+-.|
T Consensus 74 pD~IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 74 PDYIICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred CCeEEEeccCcchH---HHHHHHhcccCCCH
Confidence 45667889999885 58888888876443
No 188
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=32.79 E-value=21 Score=27.05 Aligned_cols=6 Identities=50% Similarity=1.553 Sum_probs=2.3
Q ss_pred ecCcCc
Q psy7466 226 QCSQCS 231 (338)
Q Consensus 226 ~C~~C~ 231 (338)
.|..|+
T Consensus 72 ~C~~Cg 77 (115)
T TIGR00100 72 ECEDCS 77 (115)
T ss_pred EcccCC
Confidence 333333
No 189
>KOG4377|consensus
Probab=32.76 E-value=31 Score=31.97 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.6
Q ss_pred ccccc--cccccccChhhHHHHHHHhh
Q psy7466 141 EYQCS--VCSQVFIEKKNLSKHFFKCL 165 (338)
Q Consensus 141 ~~~C~--~C~~~f~~~~~L~~H~~~h~ 165 (338)
-|.|- .|+..+.++..+.+|+.+|.
T Consensus 271 hyhcl~e~C~ykr~~k~DvirH~~~hk 297 (480)
T KOG4377|consen 271 HYHCLNEYCFYKRGQKNDVIRHVEIHK 297 (480)
T ss_pred hhcccCccccccccchhhhHHHHHHHh
Confidence 36674 49888888999999988773
No 190
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=32.21 E-value=26 Score=25.03 Aligned_cols=12 Identities=25% Similarity=0.453 Sum_probs=5.3
Q ss_pred ceeccccccccC
Q psy7466 193 SFKCAICFEYFS 204 (338)
Q Consensus 193 ~~~C~~C~~~f~ 204 (338)
|-.|..||+.|.
T Consensus 58 Pa~CkkCGfef~ 69 (97)
T COG3357 58 PARCKKCGFEFR 69 (97)
T ss_pred ChhhcccCcccc
Confidence 334444444443
No 191
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=31.92 E-value=44 Score=26.94 Aligned_cols=13 Identities=31% Similarity=1.007 Sum_probs=6.0
Q ss_pred ceecccccccccC
Q psy7466 250 VFQCTQCEKYYRS 262 (338)
Q Consensus 250 ~~~C~~C~k~f~~ 262 (338)
-|.|+.||+.|--
T Consensus 130 f~~C~~CgkiYW~ 142 (165)
T COG1656 130 FYRCPKCGKIYWK 142 (165)
T ss_pred eeECCCCcccccC
Confidence 3445555444433
No 192
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=31.47 E-value=7.1 Score=35.63 Aligned_cols=15 Identities=20% Similarity=-0.135 Sum_probs=5.2
Q ss_pred CccccCCCCCCCCCC
Q psy7466 279 GKVKRDIKPNTNILT 293 (338)
Q Consensus 279 ~~~~C~~C~~~f~~~ 293 (338)
+.|+|..|++.+.+.
T Consensus 284 RFFkC~~C~~Rt~sl 298 (344)
T PF09332_consen 284 RFFKCKDCGNRTISL 298 (344)
T ss_dssp EEEE-T-TS-EEEES
T ss_pred eeEECCCCCCeeeec
Confidence 344455555444333
No 193
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=31.25 E-value=30 Score=27.58 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=21.3
Q ss_pred CCCccccccccccccC------hhhHHHHHHHhhhhhhhhhhchhhhhhhhhcccccCCCcceeccccccc
Q psy7466 138 QGLEYQCSVCSQVFIE------KKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEY 202 (338)
Q Consensus 138 ~~~~~~C~~C~~~f~~------~~~L~~H~~~h~~~f~~~~~~l~~h~~~c~~~~~h~~~~~~~C~~C~~~ 202 (338)
..-..+|..|++-|-+ .+.+..|+.. .+|.-...|.....++..+.|..||-.
T Consensus 11 p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~------------srh~ev~LH~~s~lgdt~leCy~Cg~~ 69 (152)
T PF09416_consen 11 PSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVR------------SRHKEVSLHPDSPLGDTVLECYNCGSR 69 (152)
T ss_dssp CCCEEEETTTTEEEES--TTSSS-HHHHHHHH------------HT---EEE-TTSTT-S-B---TTT---
T ss_pred cccEeEcCCCCcEeecCCCCCcccHHHHHHHH------------ccCCceeeCCCCCCCCcEEEEEecCCC
Confidence 3345688888887754 3445555421 111111112234456667888888743
No 194
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=30.69 E-value=35 Score=21.78 Aligned_cols=13 Identities=23% Similarity=0.536 Sum_probs=7.0
Q ss_pred eeccccccccCCh
Q psy7466 194 FKCAICFEYFSLL 206 (338)
Q Consensus 194 ~~C~~C~~~f~~~ 206 (338)
++|+.||..|...
T Consensus 29 W~C~~Cgh~w~~~ 41 (55)
T PF14311_consen 29 WKCPKCGHEWKAS 41 (55)
T ss_pred EECCCCCCeeEcc
Confidence 5566665555443
No 195
>KOG2636|consensus
Probab=30.46 E-value=18 Score=33.87 Aligned_cols=24 Identities=8% Similarity=-0.195 Sum_probs=13.6
Q ss_pred CCCCccccCCCC-CCCCCCCCcccc
Q psy7466 276 AGTGKVKRDIKP-NTNILTVTPNRR 299 (338)
Q Consensus 276 ~~~~~~~C~~C~-~~f~~~~~l~~H 299 (338)
.-...|.|.+|| +++.-+.++.+|
T Consensus 397 GL~~ey~CEICGNy~Y~GrkaF~RH 421 (497)
T KOG2636|consen 397 GLDIEYNCEICGNYVYKGRKAFDRH 421 (497)
T ss_pred CCCcccceeeccCccccCcHHHHHH
Confidence 444556666666 555555555555
No 196
>KOG0402|consensus
Probab=30.22 E-value=28 Score=24.39 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=7.6
Q ss_pred CCCceeccccccc
Q psy7466 247 KHEVFQCTQCEKY 259 (338)
Q Consensus 247 ~~~~~~C~~C~k~ 259 (338)
.+..|.|+.||+.
T Consensus 33 Qhaky~CsfCGK~ 45 (92)
T KOG0402|consen 33 QHAKYTCSFCGKK 45 (92)
T ss_pred Hhhhhhhhhcchh
Confidence 4445666666654
No 197
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=29.43 E-value=55 Score=27.26 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=26.1
Q ss_pred ceecCc----CcccccChhHHHHHHHc-CCCceeccc----ccccccChhhHHHHhhccC
Q psy7466 224 PYQCSQ----CSLCFDQGSLLKAHVLE-KHEVFQCTQ----CEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 224 ~~~C~~----C~~~f~~~~~l~~H~~~-~~~~~~C~~----C~k~f~~~~~L~~H~~~~H 274 (338)
.|.|.. |...+.. .....|... ..+|+.|+. |+..-. ...|..|+...|
T Consensus 14 ~~pC~~~~~GC~~~~~~-~~~~~HE~~C~~~p~~CP~~~~~C~~~G~-~~~l~~Hl~~~H 71 (198)
T PF03145_consen 14 KFPCKNAKYGCTETFPY-SEKREHEEECPFRPCSCPFPGSGCDWQGS-YKELLDHLRDKH 71 (198)
T ss_dssp -EE-CCGGGT---EE-G-GGHHHHHHT-TTSEEE-SSSSTT---EEE-CCCHHHHHHHHT
T ss_pred eecCCCCCCCCcccccc-cChhhHhccCCCcCCcCCCCCCCccccCC-HHHHHHHHHHHC
Confidence 456655 6666444 356677776 777888877 655443 346888888888
No 198
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=29.28 E-value=15 Score=20.12 Aligned_cols=18 Identities=28% Similarity=0.800 Sum_probs=8.3
Q ss_pred eecccccccccChhhHHHH
Q psy7466 251 FQCTQCEKYYRSQSTLDVH 269 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H 269 (338)
|.|-.|++.| ....++.|
T Consensus 1 ~sCiDC~~~F-~~~~y~~H 18 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSH 18 (28)
T ss_dssp EEETTTTEEE-EGGGTTT-
T ss_pred CeeecCCCCc-CcCCcCCC
Confidence 3455566666 33334444
No 199
>KOG3214|consensus
Probab=29.23 E-value=20 Score=26.10 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=8.9
Q ss_pred CccccCCCCCCCCCC
Q psy7466 279 GKVKRDIKPNTNILT 293 (338)
Q Consensus 279 ~~~~C~~C~~~f~~~ 293 (338)
....|.+|+.+|.+.
T Consensus 46 G~~sC~iC~esFqt~ 60 (109)
T KOG3214|consen 46 GKASCRICEESFQTT 60 (109)
T ss_pred ceeeeeehhhhhccc
Confidence 345666666666554
No 200
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=28.54 E-value=34 Score=22.87 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=14.1
Q ss_pred cccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccCh
Q psy7466 113 LLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEK 154 (338)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 154 (338)
.-.|..|++.|.. -.+.+.|..||..|-..
T Consensus 9 ~~~C~~C~~~F~~------------~~rrhhCr~CG~~vC~~ 38 (69)
T PF01363_consen 9 ASNCMICGKKFSL------------FRRRHHCRNCGRVVCSS 38 (69)
T ss_dssp -SB-TTT--B-BS------------SS-EEE-TTT--EEECC
T ss_pred CCcCcCcCCcCCC------------ceeeEccCCCCCEECCc
Confidence 3479999999953 23456888888877544
No 201
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=27.48 E-value=20 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.661 Sum_probs=0.0
Q ss_pred CCceeccccc-ccccChhhHHHHhhc-cC
Q psy7466 248 HEVFQCTQCE-KYYRSQSTLDVHVSK-KH 274 (338)
Q Consensus 248 ~~~~~C~~C~-k~f~~~~~L~~H~~~-~H 274 (338)
+..|.|.+|| .+|.-+..+.+|..- .|
T Consensus 99 ~~ey~CEICGN~~Y~GrkaFekHF~E~rH 127 (196)
T PF11931_consen 99 GVEYKCEICGNQSYKGRKAFEKHFQEWRH 127 (196)
T ss_dssp -----------------------------
T ss_pred CCeeeeEeCCCcceecHHHHHHhcChhHH
Confidence 4568999997 677788889999643 35
No 202
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.44 E-value=29 Score=23.92 Aligned_cols=17 Identities=24% Similarity=0.856 Sum_probs=12.9
Q ss_pred ccccccccccccChhhHHHHH
Q psy7466 141 EYQCSVCSQVFIEKKNLSKHF 161 (338)
Q Consensus 141 ~~~C~~C~~~f~~~~~L~~H~ 161 (338)
.|.|..|+..| .+..||
T Consensus 12 ~Y~c~~cg~~~----dvvq~~ 28 (82)
T COG2331 12 SYECTECGNRF----DVVQAM 28 (82)
T ss_pred EEeecccchHH----HHHHhc
Confidence 48899998876 566665
No 203
>KOG1842|consensus
Probab=27.40 E-value=32 Score=32.23 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=26.0
Q ss_pred cceeccccccccCChHHHHHHHhhhccCC
Q psy7466 192 SSFKCAICFEYFSLLESLETHITRRHIGI 220 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~ 220 (338)
..|.|++|...|.+...|..|....|...
T Consensus 14 egflCPiC~~dl~~~~~L~~H~d~eH~~e 42 (505)
T KOG1842|consen 14 EGFLCPICLLDLPNLSALNDHLDVEHFEE 42 (505)
T ss_pred hcccCchHhhhhhhHHHHHHHHhhhcccc
Confidence 45999999999999999999998889763
No 204
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=27.04 E-value=24 Score=22.42 Aligned_cols=25 Identities=16% Similarity=0.559 Sum_probs=10.0
Q ss_pred CceecccccccccChhhHHHHhhccC
Q psy7466 249 EVFQCTQCEKYYRSQSTLDVHVSKKH 274 (338)
Q Consensus 249 ~~~~C~~C~k~f~~~~~L~~H~~~~H 274 (338)
..|.|+.|...|=-.-.+-.| ...|
T Consensus 20 ~~y~C~~C~~~FC~dCD~fiH-E~LH 44 (51)
T PF07975_consen 20 SRYRCPKCKNHFCIDCDVFIH-ETLH 44 (51)
T ss_dssp EEE--TTTT--B-HHHHHTTT-TTS-
T ss_pred CeEECCCCCCccccCcChhhh-cccc
Confidence 345566666555555555555 4444
No 205
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.96 E-value=29 Score=26.35 Aligned_cols=7 Identities=29% Similarity=0.914 Sum_probs=2.9
Q ss_pred eeccccc
Q psy7466 194 FKCAICF 200 (338)
Q Consensus 194 ~~C~~C~ 200 (338)
+.|..||
T Consensus 72 ~~C~~Cg 78 (117)
T PRK00564 72 LECKDCS 78 (117)
T ss_pred EEhhhCC
Confidence 3444444
No 206
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=26.94 E-value=22 Score=28.31 Aligned_cols=9 Identities=33% Similarity=1.040 Sum_probs=4.0
Q ss_pred eecCcCccc
Q psy7466 225 YQCSQCSLC 233 (338)
Q Consensus 225 ~~C~~C~~~ 233 (338)
|.|..|+..
T Consensus 124 ~~C~~C~~~ 132 (157)
T PF10263_consen 124 YRCPSCGRE 132 (157)
T ss_pred EEcCCCCCE
Confidence 444444443
No 207
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=26.72 E-value=4.5 Score=40.94 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=19.4
Q ss_pred eccccccccCChHHHHHHHhhhccCCCCCceecCcCcccc
Q psy7466 195 KCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCF 234 (338)
Q Consensus 195 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f 234 (338)
.|+.|-+-|.+..+- +.|. .+..|+.||-..
T Consensus 120 ~C~~C~~ey~~p~~r-----r~h~----~~~~C~~Cgp~l 150 (711)
T TIGR00143 120 LCPDCAKEYKDPLDR-----RFHA----QPIACPRCGPQL 150 (711)
T ss_pred CCHHHHHHhcCCccc-----cCCC----CCccCCCCCcEE
Confidence 488887777666442 3443 367788887543
No 208
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=26.61 E-value=33 Score=27.18 Aligned_cols=11 Identities=36% Similarity=1.165 Sum_probs=5.3
Q ss_pred ceecCcCccccc
Q psy7466 224 PYQCSQCSLCFD 235 (338)
Q Consensus 224 ~~~C~~C~~~f~ 235 (338)
+|.|. |+..|-
T Consensus 117 ~Y~C~-C~q~~l 127 (156)
T COG3091 117 PYRCQ-CQQHYL 127 (156)
T ss_pred eEEee-cCCccc
Confidence 45555 554433
No 209
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=26.37 E-value=14 Score=30.70 Aligned_cols=10 Identities=0% Similarity=-0.306 Sum_probs=4.0
Q ss_pred ccCCCCCCCC
Q psy7466 282 KRDIKPNTNI 291 (338)
Q Consensus 282 ~C~~C~~~f~ 291 (338)
.|..||+.+.
T Consensus 45 ~C~~CgYR~~ 54 (201)
T COG1779 45 VCERCGYRST 54 (201)
T ss_pred EccccCCccc
Confidence 3444444333
No 210
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=26.25 E-value=34 Score=20.24 Aligned_cols=15 Identities=13% Similarity=-0.332 Sum_probs=12.1
Q ss_pred ccccCCCCCCCCCCC
Q psy7466 280 KVKRDIKPNTNILTV 294 (338)
Q Consensus 280 ~~~C~~C~~~f~~~~ 294 (338)
+|.|..|+..|-..-
T Consensus 12 ~f~C~~C~~~FC~~H 26 (39)
T smart00154 12 GFKCRHCGNLFCGEH 26 (39)
T ss_pred CeECCccCCcccccc
Confidence 789999999886653
No 211
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=26.16 E-value=35 Score=25.75 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=2.9
Q ss_pred eeccccc
Q psy7466 194 FKCAICF 200 (338)
Q Consensus 194 ~~C~~C~ 200 (338)
+.|..||
T Consensus 71 ~~C~~Cg 77 (114)
T PRK03681 71 CWCETCQ 77 (114)
T ss_pred EEcccCC
Confidence 3344444
No 212
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=26.06 E-value=46 Score=21.42 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=5.4
Q ss_pred eccccccccC
Q psy7466 195 KCAICFEYFS 204 (338)
Q Consensus 195 ~C~~C~~~f~ 204 (338)
+|..||+.|.
T Consensus 7 ~C~~Cg~~~~ 16 (54)
T PF14446_consen 7 KCPVCGKKFK 16 (54)
T ss_pred cChhhCCccc
Confidence 4555555553
No 213
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=25.96 E-value=4.4 Score=28.55 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=16.8
Q ss_pred hccccccccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccccCh
Q psy7466 105 KRKKKDEILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEK 154 (338)
Q Consensus 105 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 154 (338)
++..+-...|.|+.|+..-.-...+. .-.+.....|..|+..|.+.
T Consensus 14 k~~~~l~~~F~CPfC~~~~sV~v~id----kk~~~~~~~C~~Cg~~~~~~ 59 (81)
T PF05129_consen 14 KKKPKLPKVFDCPFCNHEKSVSVKID----KKEGIGILSCRVCGESFQTK 59 (81)
T ss_dssp ------SS----TTT--SS-EEEEEE----TTTTEEEEEESSS--EEEEE
T ss_pred CcCCCCCceEcCCcCCCCCeEEEEEE----ccCCEEEEEecCCCCeEEEc
Confidence 33444568899999994321111110 01233346899999988665
No 214
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=25.80 E-value=21 Score=21.29 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=14.6
Q ss_pred CCccccccccccccChhhHHH
Q psy7466 139 GLEYQCSVCSQVFIEKKNLSK 159 (338)
Q Consensus 139 ~~~~~C~~C~~~f~~~~~L~~ 159 (338)
...+.|+.|+-.|.....|..
T Consensus 17 ~~id~C~~C~G~W~d~~el~~ 37 (41)
T PF13453_consen 17 VEIDVCPSCGGIWFDAGELEK 37 (41)
T ss_pred EEEEECCCCCeEEccHHHHHH
Confidence 345678888888777766654
No 215
>KOG0717|consensus
Probab=25.75 E-value=33 Score=32.40 Aligned_cols=24 Identities=33% Similarity=0.728 Sum_probs=20.6
Q ss_pred eecccccccccChhhHHHHhhc-cC
Q psy7466 251 FQCTQCEKYYRSQSTLDVHVSK-KH 274 (338)
Q Consensus 251 ~~C~~C~k~f~~~~~L~~H~~~-~H 274 (338)
+.|.+|+++|.+...|..|... .|
T Consensus 293 lyC~vCnKsFKseKq~kNHEnSKKH 317 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENSKKH 317 (508)
T ss_pred eEEeeccccccchHHHHhhHHHHHH
Confidence 8999999999999999999533 35
No 216
>PRK00420 hypothetical protein; Validated
Probab=25.17 E-value=44 Score=25.14 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.7
Q ss_pred eecCcCcc
Q psy7466 225 YQCSQCSL 232 (338)
Q Consensus 225 ~~C~~C~~ 232 (338)
..|+.||.
T Consensus 41 ~~Cp~Cg~ 48 (112)
T PRK00420 41 VVCPVHGK 48 (112)
T ss_pred eECCCCCC
Confidence 44444444
No 217
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.09 E-value=45 Score=21.18 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=3.1
Q ss_pred cccccccc
Q psy7466 253 CTQCEKYY 260 (338)
Q Consensus 253 C~~C~k~f 260 (338)
|..|++.|
T Consensus 5 C~~C~~~F 12 (57)
T cd00065 5 CMGCGKPF 12 (57)
T ss_pred CcccCccc
Confidence 33343333
No 218
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=25.03 E-value=57 Score=26.76 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=7.5
Q ss_pred cCCCccccccccccc
Q psy7466 137 SQGLEYQCSVCSQVF 151 (338)
Q Consensus 137 ~~~~~~~C~~C~~~f 151 (338)
.+..-|.|+.|...|
T Consensus 109 ~~~~~y~C~~~~~r~ 123 (176)
T COG1675 109 TENNYYVCPNCHVKY 123 (176)
T ss_pred ccCCceeCCCCCCcc
Confidence 344456665555443
No 219
>PLN03239 histone acetyltransferase; Provisional
Probab=25.02 E-value=54 Score=29.99 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=13.1
Q ss_pred CceecCcCcccccChhHHHHHH
Q psy7466 223 EPYQCSQCSLCFDQGSLLKAHV 244 (338)
Q Consensus 223 ~~~~C~~C~~~f~~~~~l~~H~ 244 (338)
..|.|+.|-+-|.+...|.+|+
T Consensus 105 ~lYiCE~Clky~~~~~~l~~H~ 126 (351)
T PLN03239 105 VLYVCEFSFGFFARKSELLRFQ 126 (351)
T ss_pred eEEEeccchhhhcCHHHHHHHH
Confidence 4566666666666666666554
No 220
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=24.89 E-value=39 Score=25.12 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=19.0
Q ss_pred ecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCC
Q psy7466 252 QCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTV 294 (338)
Q Consensus 252 ~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~ 294 (338)
.|+.|+..|.+. .+ ..|.|+.|+..+....
T Consensus 4 ~CP~C~seytY~------------dg-~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 4 PCPKCNSEYTYH------------DG-TQLICPSCLYEWNENE 33 (109)
T ss_pred cCCcCCCcceEe------------cC-CeeECccccccccccc
Confidence 477777766553 12 2478888887776543
No 221
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.87 E-value=36 Score=30.68 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=44.1
Q ss_pred cceeccccccccCChHHHHHHHhhhccCCCCCceecCcCcccccChhHHHHHHHcCCCceecccccccccChhhHHHHhh
Q psy7466 192 SSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVHVS 271 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~~L~~H~~ 271 (338)
..-.|++||..=. . ++. +. ....| .+-..|..|+.... -....|+.||.. ..|..+
T Consensus 186 ~~~~CPvCGs~P~-~-s~v-~~-~~~~G--~RyL~CslC~teW~------------~~R~~C~~Cg~~----~~l~y~-- 241 (309)
T PRK03564 186 QRQFCPVCGSMPV-S-SVV-QI-GTTQG--LRYLHCNLCESEWH------------VVRVKCSNCEQS----GKLHYW-- 241 (309)
T ss_pred CCCCCCCCCCcch-h-hee-ec-cCCCC--ceEEEcCCCCCccc------------ccCccCCCCCCC----Cceeee--
Confidence 4567999995422 1 111 22 22233 67788999986432 235689999952 222222
Q ss_pred ccCC--CCCCccccCCCCCCCCCC
Q psy7466 272 KKHP--AGTGKVKRDIKPNTNILT 293 (338)
Q Consensus 272 ~~H~--~~~~~~~C~~C~~~f~~~ 293 (338)
..-. .+.+-..|..|+...+..
T Consensus 242 ~~~~~~~~~r~e~C~~C~~YlK~~ 265 (309)
T PRK03564 242 SLDSEQAAVKAESCGDCGTYLKIL 265 (309)
T ss_pred eecCCCcceEeeecccccccceec
Confidence 1110 234667899999776654
No 222
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.74 E-value=37 Score=26.09 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=8.3
Q ss_pred cceeccccccccCCh
Q psy7466 192 SSFKCAICFEYFSLL 206 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~ 206 (338)
..+.| .||..|...
T Consensus 69 ~~~~C-~Cg~~~~~~ 82 (124)
T PRK00762 69 VEIEC-ECGYEGVVD 82 (124)
T ss_pred eeEEe-eCcCccccc
Confidence 34667 777666543
No 223
>KOG3408|consensus
Probab=24.74 E-value=56 Score=24.82 Aligned_cols=28 Identities=4% Similarity=-0.156 Sum_probs=19.9
Q ss_pred ccccccccchhhHhhhcChHHHHHHHHH
Q psy7466 108 KKDEILLMKALDEEMFKMDEENNKEMER 135 (338)
Q Consensus 108 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 135 (338)
..+...|.|-.|.+-|.+...|..|.++
T Consensus 52 lPG~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 52 LPGGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCCCceeehhhhhhhhcchHHHHHHHhc
Confidence 3455667788888888888777777654
No 224
>COG1773 Rubredoxin [Energy production and conversion]
Probab=24.45 E-value=34 Score=22.10 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=21.6
Q ss_pred ceecccccccccChhhHHHHhhccCCC----CCCccccCCCCC
Q psy7466 250 VFQCTQCEKYYRSQSTLDVHVSKKHPA----GTGKVKRDIKPN 288 (338)
Q Consensus 250 ~~~C~~C~k~f~~~~~L~~H~~~~H~~----~~~~~~C~~C~~ 288 (338)
.|+|..||..|.-...--.+ -..=.+ -.-.+.|+.|+.
T Consensus 3 ~~~C~~CG~vYd~e~Gdp~~-gi~pgT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 3 RWRCSVCGYVYDPEKGDPRC-GIAPGTPFEDLPDDWVCPECGV 44 (55)
T ss_pred ceEecCCceEeccccCCccC-CCCCCCchhhCCCccCCCCCCC
Confidence 68899999988755443333 111000 112368888885
No 225
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=24.39 E-value=37 Score=28.10 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=12.2
Q ss_pred ccccccccchhhHhhhcCh
Q psy7466 108 KKDEILLMKALDEEMFKMD 126 (338)
Q Consensus 108 ~~~~~~~~C~~C~~~f~~~ 126 (338)
.....||.|.+|.+.|.+.
T Consensus 191 ~~e~IPF~C~iCKkdy~sp 209 (259)
T COG5152 191 PGEKIPFLCGICKKDYESP 209 (259)
T ss_pred CCCCCceeehhchhhccch
Confidence 4445677777777776654
No 226
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.94 E-value=43 Score=18.29 Aligned_cols=8 Identities=25% Similarity=1.481 Sum_probs=2.6
Q ss_pred ceeccccc
Q psy7466 250 VFQCTQCE 257 (338)
Q Consensus 250 ~~~C~~C~ 257 (338)
.|.|..|+
T Consensus 15 ~Y~C~~Cd 22 (30)
T PF07649_consen 15 FYRCSECD 22 (30)
T ss_dssp EEE-TTT-
T ss_pred eEECccCC
Confidence 34444443
No 227
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=23.74 E-value=40 Score=21.75 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=10.3
Q ss_pred CCCccccccccccccC
Q psy7466 138 QGLEYQCSVCSQVFIE 153 (338)
Q Consensus 138 ~~~~~~C~~C~~~f~~ 153 (338)
+...|.|+.||..+.-
T Consensus 11 ~~v~~~Cp~cGipthc 26 (55)
T PF13824_consen 11 AHVNFECPDCGIPTHC 26 (55)
T ss_pred cccCCcCCCCCCcCcc
Confidence 3456788888776543
No 228
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=23.61 E-value=45 Score=20.93 Aligned_cols=10 Identities=10% Similarity=-0.257 Sum_probs=5.0
Q ss_pred ccccCCCCCC
Q psy7466 280 KVKRDIKPNT 289 (338)
Q Consensus 280 ~~~C~~C~~~ 289 (338)
.+.|..||++
T Consensus 37 R~~CGkCgyT 46 (51)
T COG1998 37 RWACGKCGYT 46 (51)
T ss_pred eeEeccccce
Confidence 3455555543
No 229
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=23.35 E-value=42 Score=31.50 Aligned_cols=15 Identities=7% Similarity=-0.161 Sum_probs=9.5
Q ss_pred ccccCCCCCCCCCCC
Q psy7466 280 KVKRDIKPNTNILTV 294 (338)
Q Consensus 280 ~~~C~~C~~~f~~~~ 294 (338)
-|.|+.||+.+....
T Consensus 367 g~rC~kCg~~~~~~~ 381 (421)
T COG1571 367 GFRCKKCGTRARETL 381 (421)
T ss_pred CcccccccccCCccc
Confidence 567777776665543
No 230
>PRK10220 hypothetical protein; Provisional
Probab=23.35 E-value=49 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=18.9
Q ss_pred ecccccccccChhhHHHHhhccCCCCCCccccCCCCCCCCCCC
Q psy7466 252 QCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTV 294 (338)
Q Consensus 252 ~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~C~~C~~~f~~~~ 294 (338)
.|+.|+..|.+. ....|.|+.|+.-+....
T Consensus 5 ~CP~C~seytY~-------------d~~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 5 HCPKCNSEYTYE-------------DNGMYICPECAHEWNDAE 34 (111)
T ss_pred cCCCCCCcceEc-------------CCCeEECCcccCcCCccc
Confidence 577777666543 122478888887776554
No 231
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.91 E-value=31 Score=26.00 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=3.7
Q ss_pred eecccccccc
Q psy7466 194 FKCAICFEYF 203 (338)
Q Consensus 194 ~~C~~C~~~f 203 (338)
+.|..||..|
T Consensus 71 ~~C~~Cg~~~ 80 (113)
T PF01155_consen 71 ARCRDCGHEF 80 (113)
T ss_dssp EEETTTS-EE
T ss_pred EECCCCCCEE
Confidence 3344444433
No 232
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.86 E-value=26 Score=27.80 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=21.9
Q ss_pred ccccccccchhhHhhhcChHHHHHHHHHhcCCCccccccccccc
Q psy7466 108 KKDEILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVF 151 (338)
Q Consensus 108 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 151 (338)
..+...|.|..||....-. |.+.. -.|+.||..-
T Consensus 107 ~~g~G~l~C~~Cg~~~~~~---------~~~~l-~~Cp~C~~~~ 140 (146)
T PF07295_consen 107 VVGPGTLVCENCGHEVELT---------HPERL-PPCPKCGHTE 140 (146)
T ss_pred EecCceEecccCCCEEEec---------CCCcC-CCCCCCCCCe
Confidence 3456778999999765321 33333 3899998653
No 233
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=22.54 E-value=70 Score=19.13 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=18.0
Q ss_pred ceeccccccccCC--hHHHHHHHhhhcc
Q psy7466 193 SFKCAICFEYFSL--LESLETHITRRHI 218 (338)
Q Consensus 193 ~~~C~~C~~~f~~--~~~l~~H~~~~H~ 218 (338)
.-.|+.||..|.. ...-..|. +.|.
T Consensus 13 ~~~C~~CgM~Y~~~~~eD~~~H~-~yH~ 39 (41)
T PF13878_consen 13 ATTCPTCGMLYSPGSPEDEKLHK-KYHD 39 (41)
T ss_pred CcCCCCCCCEECCCCHHHHHHHH-HHHh
Confidence 4689999999874 45667776 5553
No 234
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=22.43 E-value=47 Score=26.21 Aligned_cols=10 Identities=0% Similarity=-0.114 Sum_probs=4.9
Q ss_pred CccccCCCCC
Q psy7466 279 GKVKRDIKPN 288 (338)
Q Consensus 279 ~~~~C~~C~~ 288 (338)
..|.|..|+-
T Consensus 132 ~~y~C~~C~g 141 (146)
T smart00731 132 SRYRCGKCGG 141 (146)
T ss_pred ceEEcCCCCC
Confidence 4455555543
No 235
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=21.70 E-value=38 Score=20.41 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=10.1
Q ss_pred cceeccccccccCCh
Q psy7466 192 SSFKCAICFEYFSLL 206 (338)
Q Consensus 192 ~~~~C~~C~~~f~~~ 206 (338)
.||.|..|+..|-..
T Consensus 12 ~~~~C~~C~~~FC~~ 26 (43)
T PF01428_consen 12 LPFKCKHCGKSFCLK 26 (43)
T ss_dssp SHEE-TTTS-EE-TT
T ss_pred CCeECCCCCcccCcc
Confidence 589999999999754
No 236
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=21.24 E-value=12 Score=38.03 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=8.8
Q ss_pred cceecccccccc
Q psy7466 192 SSFKCAICFEYF 203 (338)
Q Consensus 192 ~~~~C~~C~~~f 203 (338)
.+..|+.||-..
T Consensus 139 ~~~~C~~Cgp~l 150 (711)
T TIGR00143 139 QPIACPRCGPQL 150 (711)
T ss_pred CCccCCCCCcEE
Confidence 456899998654
No 238
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.09 E-value=29 Score=30.98 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=8.9
Q ss_pred CcceeccccccccC
Q psy7466 191 RSSFKCAICFEYFS 204 (338)
Q Consensus 191 ~~~~~C~~C~~~f~ 204 (338)
.+.+.|..|+..++
T Consensus 236 ~rve~C~~C~~YlK 249 (290)
T PF04216_consen 236 YRVEVCESCGSYLK 249 (290)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEECCcccchHH
Confidence 34567888875554
No 239
>KOG2636|consensus
Probab=21.02 E-value=63 Score=30.41 Aligned_cols=26 Identities=31% Similarity=0.846 Sum_probs=16.2
Q ss_pred hcCCCcccccccc-ccccChhhHHHHH
Q psy7466 136 ISQGLEYQCSVCS-QVFIEKKNLSKHF 161 (338)
Q Consensus 136 h~~~~~~~C~~C~-~~f~~~~~L~~H~ 161 (338)
|.=...|.|.+|| +++.....+.+|.
T Consensus 396 HGL~~ey~CEICGNy~Y~GrkaF~RHF 422 (497)
T KOG2636|consen 396 HGLDIEYNCEICGNYVYKGRKAFDRHF 422 (497)
T ss_pred cCCCcccceeeccCccccCcHHHHHHh
Confidence 4445556677776 6666666666664
No 240
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=20.95 E-value=54 Score=29.24 Aligned_cols=34 Identities=18% Similarity=0.496 Sum_probs=19.5
Q ss_pred ceecCcCcccccChhHHHHHHHcCCCceecccccccccChh
Q psy7466 224 PYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQS 264 (338)
Q Consensus 224 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~C~~C~k~f~~~~ 264 (338)
-.+|+.|+.....+. |. ...+.|+.||+.|.-..
T Consensus 26 ~~~c~~c~~~~~~~~-l~------~~~~vc~~c~~h~rl~a 59 (285)
T TIGR00515 26 WTKCPKCGQVLYTKE-LE------RNLEVCPKCDHHMRMDA 59 (285)
T ss_pred eeECCCCcchhhHHH-HH------hhCCCCCCCCCcCcCCH
Confidence 456777776543332 21 22367888887776443
No 241
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.73 E-value=45 Score=25.39 Aligned_cols=13 Identities=15% Similarity=0.375 Sum_probs=6.6
Q ss_pred ceecccccccccC
Q psy7466 250 VFQCTQCEKYYRS 262 (338)
Q Consensus 250 ~~~C~~C~k~f~~ 262 (338)
|-.|..||+.|+.
T Consensus 68 psfchncgs~fpw 80 (160)
T COG4306 68 PSFCHNCGSRFPW 80 (160)
T ss_pred cchhhcCCCCCCc
Confidence 3445555555543
No 242
>KOG3002|consensus
Probab=20.31 E-value=80 Score=28.39 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=44.2
Q ss_pred CcceeccccccccCChHHHHHHHhhhccCCCCCceecCc----CcccccChhHHHHHHHc-CCCceeccc----cccccc
Q psy7466 191 RSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ----CSLCFDQGSLLKAHVLE-KHEVFQCTQ----CEKYYR 261 (338)
Q Consensus 191 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~C~~----C~~~f~~~~~l~~H~~~-~~~~~~C~~----C~k~f~ 261 (338)
....+|+.|...+.....|..=. . .. ...+.|+. |.+.|..... ..|.+. ...+|.|+. |...-
T Consensus 78 ~~~~~CP~Cr~~~g~~R~~amEk--V-~e--~~~vpC~~~~~GC~~~~~Y~~~-~~HE~~C~f~~~~CP~p~~~C~~~G- 150 (299)
T KOG3002|consen 78 KVSNKCPTCRLPIGNIRCRAMEK--V-AE--AVLVPCKNAKLGCTKSFPYGEK-SKHEKVCEFRPCSCPVPGAECKYTG- 150 (299)
T ss_pred hhcccCCccccccccHHHHHHHH--H-HH--hceecccccccCCceeeccccc-cccccccccCCcCCCCCcccCCccC-
Confidence 45677888887777554443322 1 11 34566764 7777777665 445444 346666664 33322
Q ss_pred ChhhHHHHhhccC
Q psy7466 262 SQSTLDVHVSKKH 274 (338)
Q Consensus 262 ~~~~L~~H~~~~H 274 (338)
....|..|++..|
T Consensus 151 ~~~~l~~H~~~~h 163 (299)
T KOG3002|consen 151 SYKDLYAHLNDTH 163 (299)
T ss_pred cHHHHHHHHHhhC
Confidence 3345777777677
Done!