RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7466
(338 letters)
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 36.0 bits (83), Expect = 0.006
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 224 PYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVHVSKKH 274
PY C C + F LK H+ C C K +R+ + HV KKH
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKH 123
Score = 26.8 bits (59), Expect = 9.7
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 153 EKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETH 212
E+K L + K L+ Q S + +K L S + C +C FS SL
Sbjct: 37 EQKRLIRAVVKTLIYNPQLLDE-SSYLYKLLT---SKAVSPYVCPLCLMPFSSSVSL--- 89
Query: 213 ITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEV 250
++HI E C C F HV +KH +
Sbjct: 90 --KQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHNI 125
>gnl|CDD|216357 pfam01197, Ribosomal_L31, Ribosomal protein L31.
Length = 69
Score = 30.6 bits (70), Expect = 0.16
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 250 VFQCTQCEKYYRSQST-------LDVHVSKKHPAGTGKVK 282
VF C+ C + + ST +DV S HP TGK K
Sbjct: 13 VFTCSSCGNVFVTGSTKEYPVIKIDVC-SACHPFYTGKQK 51
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in
eukaryotes and bacteria, YeiC-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 288
Score = 31.9 bits (73), Expect = 0.42
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 275 PAGTGKVKRDIKPNTNILTVTPNRRSARNDSTKATVKTETEVKVK 319
P K+K+ I +TPNR + E E K
Sbjct: 161 PTSAPKLKKLFYLLHAIDLLTPNRAELEALAGALIENNEDENKAA 205
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 28.3 bits (64), Expect = 0.48
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 253 CTQCEKYYRSQSTLDVHV-SKKH 274
C C+KY++S++ L+ H+ SKKH
Sbjct: 4 CVACDKYFKSENALENHLKSKKH 26
>gnl|CDD|223332 COG0254, RpmE, Ribosomal protein L31 [Translation, ribosomal
structure and biogenesis].
Length = 75
Score = 28.4 bits (64), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 250 VFQCTQCEKYYRSQSTL---DVHV---SKKHPAGTGKVK 282
VF C+ C + ++ST ++++ SK HP TGK K
Sbjct: 14 VFVCSSCGNEFTTRSTKGTDEINLDVCSKCHPFYTGKQK 52
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 29.0 bits (65), Expect = 1.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 8/50 (16%)
Query: 76 GRPKGSLNKVKREVVESPSPKREIDAPIVKRKKKDEILLMKALDEEMFKM 125
GR K S N +K+EV +REI A ++R+ +E +L ++++E K+
Sbjct: 37 GRLKRSFNAIKQEV------EREIGADEIRRQLHNEHIL--SMEQEARKI 78
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 30.1 bits (67), Expect = 2.1
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 73 DGRGRPKGSLNKVKREVVESPSP---KREIDAPIVKRKKKDEILLMKALDEEMFKMDEEN 129
+G RP+ LN KR+V +P+P R +P + ++E+L K LD + K+D E
Sbjct: 231 NGEERPRLILNPRKRDVSATPTPPAEARSRPSPFGAARPREEVLAEKGLDWK--KLDSEI 288
Query: 130 NKEMERIS 137
+ R +
Sbjct: 289 EAKTSRPT 296
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.5 bits (66), Expect = 2.8
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 6/117 (5%)
Query: 22 RKEGEEKEEERVETQLFQRRTRQRGVTEPETITGKRKRSLDDSQEEVIVKKD---GRGRP 78
K+ ++++ + + + E K K+ + E K++ + RP
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRP 175
Query: 79 KGSLNKVKREVVESP---SPKREIDAPIVKRKKKDEILLMKALDEEMFKMDEENNKE 132
K K + P +R+ VK K ++ + + EE D E
Sbjct: 176 KKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTS 232
>gnl|CDD|223790 COG0718, COG0718, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 105
Score = 28.0 bits (63), Expect = 3.0
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 58 KRSLDDSQEEVIVKKDGRGRPKGSLNKV----KREVVESPSPKREIDAPIVKRKKKD--E 111
++ + QEE + +K+ G+ G L V K EV EID ++ + K+ E
Sbjct: 18 QKKMQKMQEE-LAQKEVTGKAGGGLVTVTINGKGEVK-----SVEIDPSLLDPEDKEMLE 71
Query: 112 ILLMKALDEEMFKMDEENNKEMERISQGL 140
L++ A ++ K++E ++M ++ G+
Sbjct: 72 DLILAAFNDAKKKVEETRKEKMGALTGGM 100
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 25.7 bits (56), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 251 FQCTQCEKYYRSQSTLDVHVSKKH 274
F+C C K + S+ L H+ K H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 25.7 bits (56), Expect = 3.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKC 164
++C +C + F K L +H K
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 24.9 bits (54), Expect = 8.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 194 FKCAICFEYFSLLESLETHITRRH 217
FKC +C + FS ++L+ H+ + H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 24.5 bits (53), Expect = 10.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 225 YQCSQCSLCFDQGSLLKAHVLEKH 248
++C C F LK H+ + H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
>gnl|CDD|225936 COG3401, COG3401, Fibronectin type 3 domain-containing protein
[General function prediction only].
Length = 343
Score = 29.1 bits (65), Expect = 3.5
Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 19/154 (12%)
Query: 18 LICVRKEGEEKEEER-VETQLFQRRTRQRGVTEPET-------ITGKRKRSLDDSQEEVI 69
+ R + + K + +Q G+ E E T K S D + V
Sbjct: 8 FVLYRTKKDLKLKRIGTIKNKYQTHYYDEGL-EGEESYPYQEGTTKVDKISYDSERILVK 66
Query: 70 VKKDGRGR-PKGSLNKVKR-EVVESPSPKREIDAPIVKRKKKDEILLMKALDEEMFKMDE 127
R R SL + K +V SP P + I++R+ D L L
Sbjct: 67 TSFIERVRSVFASLERPKSVKVFWSPHPDVSVGKYIIQRQNGDGKFLRTGL--------V 118
Query: 128 ENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHF 161
+N +E I L + + + K F
Sbjct: 119 KNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSF 152
>gnl|CDD|223623 COG0549, ArcC, Carbamate kinase [Amino acid transport and
metabolism].
Length = 312
Score = 28.8 bits (65), Expect = 4.0
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 69 IVKKDGRGRPKGSLNKVKREVVESPSPKREIDAPIVKR 106
+ K+D R VV SP P R ++A +K
Sbjct: 150 VFKEDAGRG--------YRRVVPSPKPVRIVEAEAIKA 179
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 28.9 bits (65), Expect = 4.0
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 22 RKEGEEKEEERVETQLFQRRTRQRGVTEPETITGKRKRSLDDSQEEVIVKKDGRGRPKGS 81
R+E +E+EEE E + + PET +R+ +DS+++ + GS
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSF----GPETEEDRRRADDEDSEDDEEDNDNTPSPKSGS 233
Query: 82 LNKVKREVVESPSPKREIDAPIVKRKKK 109
+ K + S + +AP + KK
Sbjct: 234 SSPAKPTSILKKSAAKRSEAPSSSKAKK 261
>gnl|CDD|227431 COG5100, NPL4, Nuclear pore protein [Nuclear structure].
Length = 571
Score = 28.8 bits (64), Expect = 5.0
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 79 KGSLNKVKREVVESPSPKREIDAPIVKRKKKDEILLMKALDEEMFKMDEENNKEMERISQ 138
S N+ KR+V P ++ + +KR+K ++ +D+ + K D + M + Q
Sbjct: 81 IASNNEKKRDVPGKP---KQDCSKGIKREKDSMPVIQDPIDDSLEKEDGLIRRSMTMLCQ 137
Query: 139 -GLEYQCSVCSQV-----FIEKKNLSKH--FFKCLMKFTQKKKNL 175
G CS CS + K N KH F L K K L
Sbjct: 138 HGSNGMCSYCSPLDPWDEKYYKDNKIKHLSFHSYLEKMNSNKNKL 182
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 28.4 bits (64), Expect = 5.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 107 KKKDEILLMKALDEEMFKMDE 127
KK++EIL M L+ ++ +DE
Sbjct: 150 KKRNEILQMALLEPKLAILDE 170
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 28.8 bits (65), Expect = 5.4
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 23 KEGEEKEEERVETQLFQRRTRQRGVTEPETIT-GKRKRSLDDSQEEVIVKKDGRGRPKGS 81
E EEK E+ L + R +T+ + K + L + Q++ ++D P
Sbjct: 459 PELEEKLEKEERELL---QKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDLATLPTLK 515
Query: 82 LNKVKREVVESPSPKREIDAPIV 104
L V + ++ + V
Sbjct: 516 LGDVPDPIEKTSLETEVSNEAKV 538
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 28.0 bits (63), Expect = 6.1
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 23/93 (24%)
Query: 191 RSSFKCAIC------FEYFSLLESLETHITRRHIGICEEPYQCSQCSL--CFDQGSLLKA 242
+S C C FE F+ L SL I + +L C K
Sbjct: 49 KSRLTCLTCGKTSTTFEPFTYL-SLP---------IPSGSGDAPKVTLEDCLRL--FTKE 96
Query: 243 HVLEKHEVFQCTQCEKYYRSQSTLDVHVSKKHP 275
L+ ++C +C+K ++ L + + P
Sbjct: 97 ETLDGDNAWKCPKCKKKRKATKKLTIS---RLP 126
>gnl|CDD|117168 pfam08594, UPF0300, Uncharacterized protein family (UPF0300). This
family of proteins appear to be specific to S. pombe.
Length = 215
Score = 27.8 bits (62), Expect = 6.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 109 KDEILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQ 149
E+LL + DE +F+ D+EN E+E + L S+C
Sbjct: 174 PKELLLFRKSDEFIFQ-DQENIDELESFRRVLLEDLSLCES 213
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a zinc-finger
domain with the CxxCx(12)Hx(6)H motif, found in multiple
copies in a wide range of proteins from plants to
metazoans. Some member proteins, particularly those from
plants, are annotated as being RNA-binding.
Length = 25
Score = 24.8 bits (55), Expect = 7.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 251 FQCTQCEKYYRSQSTLDVHV-SKKH 274
F C C + S+S L H+ KKH
Sbjct: 1 FYCELCNVTFTSESQLKSHLRGKKH 25
>gnl|CDD|184959 PRK14997, PRK14997, LysR family transcriptional regulator;
Provisional.
Length = 301
Score = 28.0 bits (62), Expect = 7.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 30 EERVETQLFQRRTRQRGVTE 49
EER+ +L QR TRQ VTE
Sbjct: 41 EERLGVRLIQRTTRQFNVTE 60
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 24.7 bits (54), Expect = 8.0
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 251 FQCTQCEKYYRSQSTLDVHVSKKH 274
++C +C K ++S+S L H+ + H
Sbjct: 1 YRCPECGKVFKSKSALREHM-RTH 23
Score = 24.3 bits (53), Expect = 9.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+C C +VF K L +H
Sbjct: 1 YRCPECGKVFKSKSALREH 19
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 27.9 bits (62), Expect = 8.4
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 248 HEVFQCTQCEKYYRSQSTLDVHVSK---KHPAGTGKVKRDIKPNTNILTV 294
+++ C C KY R + +L H++K + P G G + ++ V
Sbjct: 46 TKLYICEYCLKYMRKKKSLLRHLAKCDIRQPPGGGIYGAVTEGPLSVFEV 95
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 25.4 bits (55), Expect = 9.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 140 LEYQCSVCSQVFIEKKNLSKHFFK 163
L Y+C +C +++I++K++ H K
Sbjct: 4 LGYECPICGEIYIKRKSMITHLRK 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.372
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,251,579
Number of extensions: 1535562
Number of successful extensions: 1790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1784
Number of HSP's successfully gapped: 77
Length of query: 338
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 240
Effective length of database: 6,590,910
Effective search space: 1581818400
Effective search space used: 1581818400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)