RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7466
(338 letters)
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 55.2 bits (134), Expect = 3e-10
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 208 SLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQ 263
S + R H G E+PY+C C F Q +K H+L E F C C+ +
Sbjct: 2 SSGSSG-RTHSG--EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Query: 264 STLDVHVSKKH 274
S L VH+ K+H
Sbjct: 59 SDLGVHLRKQH 69
Score = 48.7 bits (117), Expect = 5e-08
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKH 248
++C IC F+ +++ HI + + C C + S L H+ ++H
Sbjct: 16 YECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 25.9 bits (58), Expect = 4.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
+ C C V K +L H
Sbjct: 46 FHCPHCDTVIARKSDLGVH 64
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 51.7 bits (125), Expect = 5e-09
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL---EKHEV 250
F+C IC FS + L THI R H G E+P+ C C F + K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTG--EKPFACDICGRKFARSDERKRHRDIQHILP-- 58
Query: 251 FQCTQCEKYYRSQSTLDVHVS 271
+ E+ L+ V+
Sbjct: 59 ILEDKVEELLSKNYHLENEVA 79
Score = 40.9 bits (97), Expect = 4e-05
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 28/103 (27%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
+QC +C + F +L+ H T +G F C IC
Sbjct: 4 FQCRICMRNFSRSDHLTTH------------------------IRTHTGEKPFACDICGR 39
Query: 202 YFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHV 244
F+ + + H P + + L+ V
Sbjct: 40 KFARSDERKRHR-DIQH---ILPILEDKVEELLSKNYHLENEV 78
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 224 PYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQSTLDVH 269
P+QC C F + L H+ EK F C C + + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKP--FACDICGRKFARSDERKRH 50
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 49.3 bits (118), Expect = 3e-08
Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAH-----VLEKHEVFQCTQCEKYYRSQSTLDVHVSKKHPA 276
QC C Q + L H F C C K + ++ H SK HPA
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 277 GTGKVKRDIKP 287
+ P
Sbjct: 65 LLLAPQESSGP 75
Score = 33.9 bits (78), Expect = 0.009
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 21/87 (24%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
QC +C +K +L+ H + KH F C C +
Sbjct: 8 LQCEICGFTCRQKASLNWH-----QR---------KH-------AETVAALRFPCEFCGK 46
Query: 202 YFSLLESLETHITRRHIGICEEPYQCS 228
F +S+ H ++ H + P + S
Sbjct: 47 RFEKPDSVAAHRSKSHPALLLAPQESS 73
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 49.4 bits (119), Expect = 3e-08
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHE 249
C IC + F + L H H G E+PY C C L F + + HV +
Sbjct: 8 VACEICGKIFRDVYHLNRH-KLSHSG--EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 250 VFQCTQCEKYYRSQSTLDVHVSKKH 274
+ C C K + L+ H+ + H
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 38.2 bits (90), Expect = 4e-04
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQSTLDVH 269
C C F L H L EK + C C ++ + + H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKP--YSCPVCGLRFKRKDRMSYH 54
Score = 37.9 bits (89), Expect = 4e-04
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 25/102 (24%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
C +C ++F + +L++H K + SG + C +C
Sbjct: 8 VACEICGKIFRDVYHLNRH------------------------KLSHSGEKPYSCPVCGL 43
Query: 202 YFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
F + + H+ R H G +PY C C F + L H
Sbjct: 44 RFKRKDRMSYHV-RSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 50.9 bits (123), Expect = 8e-08
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 142 YQCSVCSQVFIEKKNLSKHF--------FKCL---MKFTQKKKNLSKHFFKCLMKFTQSG 190
Y C C + F +L++H +KC F+ KK+L++H + T +G
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD-KKDLTRH------QRTHTG 74
Query: 191 RSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----E 246
+KC C + FS +L H R H G E+PY C +C F Q + L+AH E
Sbjct: 75 EKPYKCPECGKSFSQRANLRAH-QRTHTG--EKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 247 KHEVFQCTQCEKYYRSQSTLDVH 269
K ++C +C K + + L H
Sbjct: 132 KP--YKCPECGKSFSREDNLHTH 152
Score = 49.0 bits (118), Expect = 3e-07
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 142 YQCSVCSQVFIEKKNLSKHF--------FKCL---MKFTQKKKNLSKHFFKCLMKFTQSG 190
Y+C C + F +KK+L++H +KC F+Q + NL H + T +G
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQ-RANLRAH------QRTHTG 102
Query: 191 RSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH----VLE 246
+ C C + FS L L H R H G E+PY+C +C F + L H E
Sbjct: 103 EKPYACPECGKSFSQLAHLRAH-QRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 247 KHEVFQCTQCEKYYRSQSTLDVH 269
K ++C +C K + + L+VH
Sbjct: 160 KP--YKCPECGKSFSRRDALNVH 180
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 48.7 bits (117), Expect = 1e-07
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 189 SGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH--VLE 246
SG S +C C + F L+ H R+H G E+P++C +C C+ + L H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVH-NRKHTG--EKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 247 KH---EVFQCTQCEKYYRSQSTLDVH 269
+ +VF C+ C++ +R + L +H
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 46.7 bits (112), Expect = 6e-07
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 142 YQCSVCSQVFIEKKNLSKHF--------FKCL---MKFTQKKKNLSKHFFKCLMKFTQSG 190
+C C + F+ K L H F+C + +K+ NL +H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKE-NLLEHE---ARNCMNRS 63
Query: 191 RSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
F C++C E F L H H G E PY+CS CS F Q L++H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLH-MVSHTG--EMPYKCSSCSQQFMQKKDLQSH 113
Score = 39.8 bits (94), Expect = 2e-04
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 217 HIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQSTLDVH 269
G +C C F LK H EK F+C +C K Y + L H
Sbjct: 2 SSG--SSGVECPTCHKKFLSKYYLKVHNRKHTGEKP--FECPKCGKCYFRKENLLEH 54
Score = 26.3 bits (59), Expect = 8.6
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 142 YQCSVCSQVFIEKKNLSKHF-----------FKCLM---KFTQKKKNLSKHFFKCLMKFT 187
++C C + + K+NL +H F C + F ++ L H +
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRM-ELRLH------MVS 88
Query: 188 QSGRSSFKCAICFEYFSLLESLETHITRRHIG 219
+G +KC+ C + F + L++H+ + H G
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 46.3 bits (111), Expect = 4e-07
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 194 FKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EK 247
+ C + C FS SL HI R H G ++P+QC C F + L H+ EK
Sbjct: 5 YACPVESCDRRFSQSGSLTRHI-RIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 248 HEVFQCTQCEKYYRSQSTLDVH 269
F C C + + H
Sbjct: 62 P--FACDICGRKFARSDERKRH 81
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 44.7 bits (107), Expect = 2e-06
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHE 249
KC +C + FS + L+TH+ R H G +PY+C C S L H+ E+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM-RCHTG--VKPYKCKTCDYAAADSSSLNKHLRIHSDERP- 64
Query: 250 VFQCTQCEKYYRSQSTLDVH 269
F+C C R+ S L VH
Sbjct: 65 -FKCQICPYASRNSSQLTVH 83
Score = 40.9 bits (97), Expect = 4e-05
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 27/102 (26%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
++C VC + F K L H +G +KC C
Sbjct: 9 HKCEVCGKCFSRKDKLKTH------------------------MRCHTGVKPYKCKTCDY 44
Query: 202 YFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+ SL H+ R H E P++C C S L H
Sbjct: 45 AAADSSSLNKHL-RIHSD--ERPFKCQICPYASRNSSQLTVH 83
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 217 HIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQSTLDVH 269
P++C C CF + LK H+ K ++C C+ S+L+ H
Sbjct: 3 SGS--SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP--YKCKTCDYAAADSSSLNKH 55
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 46.0 bits (110), Expect = 2e-06
Identities = 43/157 (27%), Positives = 56/157 (35%), Gaps = 38/157 (24%)
Query: 142 YQCSVCSQVFIEKKNLSKHF-----------FKC--------LMKFTQKKKNLSKHFFKC 182
+ CSQ F ++ L H F C L F + L H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM-LVVH---- 58
Query: 183 LMKFTQSGRSSFKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCSQ--CSLCFDQGS 238
+G KC C + +S LE+L+TH+ R H G E+PY C CS F S
Sbjct: 59 --MRRHTGEKPHKCTFEGCRKSYSRLENLKTHL-RSHTG--EKPYMCEHEGCSKAFSNAS 113
Query: 239 LLKAHVLEKHEV---FQCT--QCEKYYRSQSTLDVHV 270
H H + C C K Y S+L HV
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 38.0 bits (89), Expect = 0.001
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAHVLEKH-----EVFQCTQCE-----KYYRSQSTLDVHV 270
E + CS FD L H+ +H + F C + +++Q L VH+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 43.3 bits (103), Expect = 3e-06
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 184 MKFTQSGRSSFKCAICFEYFSLLESLETHI-TRRHIGICEEPYQCSQCSLCFDQGSLLKA 242
M+FT+ G +++C +C ++ + + H T + Y C C F + + A
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRN--VKVYPCPFCFKEFTRKDNMTA 58
Query: 243 HVLEKHEV 250
HV H++
Sbjct: 59 HVKIIHKI 66
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEV----FQCTQCEKYYRSQSTLDVHV 270
G E Y+C CS + S H + H+ + C C K + + + HV
Sbjct: 3 FTKEG--EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 271 SKKHP 275
H
Sbjct: 61 KIIHK 65
Score = 29.4 bits (67), Expect = 0.22
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 23/79 (29%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
Y+C VCS+V+ N +H + + + C CF+
Sbjct: 11 YRCKVCSRVYTHISNFCRH----------------------YVTSHKRNVKVYPCPFCFK 48
Query: 202 YFSLLESLETHITRRHIGI 220
F+ +++ H+ + I
Sbjct: 49 EFTRKDNMTAHV-KIIHKI 66
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.1 bits (103), Expect = 5e-06
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 190 GRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHE 249
+ ++C +C S L H +C C CSL F L + H K E
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQG-----SHERLCRNAAVCPYCSLRFFSPELKQEH-ESKCE 66
Query: 250 V--FQCTQCEKYYRSQSTLDVHVSKKH 274
C +C + ++S ++ H + H
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 27.9 bits (61), Expect = 1.9
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 17/85 (20%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFK---------CLMKFTQKKKNLSKHFFKCLMKFTQSGRS 192
YQC +C+ H C ++F + +H KC K
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPEL-KQEHESKCEYK------- 68
Query: 193 SFKCAICFEYFSLLESLETHITRRH 217
C C F S+ H H
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVH 93
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 43.6 bits (102), Expect = 8e-06
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 190 GRSSFKCAICFEYFSLLESLETH--ITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEK 247
G S F+C C + L L H T + E + + L ++
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 248 H--EVFQCTQCEKYYRSQSTLDVHVSKKHP 275
+V +C C + S L VH+ K
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 42.4 bits (99), Expect = 2e-05
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 20/104 (19%)
Query: 129 NNKEMERISQGLE-YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKF- 186
+ K I G ++C CS + L+ H M T ++ + K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH-----MNETGHYRDDNHETDNNNPKRW 60
Query: 187 -------------TQSGRSSFKCAICFEYFSLLESLETHITRRH 217
+ + KC C F L+ L H+ +
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 42.4 bits (101), Expect = 8e-06
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 193 SFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKH 248
SF C IC + F +L TH+ H PY C C F Q S +K H EK
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL-LIHSD--TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 249 EVFQCTQCEKYYRSQSTLDVH 269
+C C K + S L H
Sbjct: 58 --HKCQVCGKAFSQSSNLITH 76
Score = 35.1 bits (82), Expect = 0.004
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
+ C +C + F LS H S + C C +
Sbjct: 2 FDCKICGKSFKRSSTLSTH------------------------LLIHSDTRPYPCQYCGK 37
Query: 202 YFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
F ++ H T H G E+P++C C F Q S L H
Sbjct: 38 RFHQKSDMKKH-TFIHTG--EKPHKCQVCGKAFSQSSNLITH 76
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 43.2 bits (101), Expect = 8e-06
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 212 HITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKH------EVFQCTQCEKYYRSQST 265
H + E Y+C C+ ++ HV +H + C +C +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 266 LDVHVSKKHPAGTGKVKRDIKPNTNIL 292
L H K HP +K N +
Sbjct: 66 LSEHNLKYHPGEENFKLTMVKRNNQTI 92
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 42.9 bits (102), Expect = 1e-05
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 194 FKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EK 247
++C C FS + L+ H RRH G +P+QC C F + LK H EK
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQ-RRHTG--VKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 248 HEVFQC--TQCEKYYRSQSTLDVH 269
F C C+K + L H
Sbjct: 94 P--FSCRWPSCQKKFARSDELVRH 115
Score = 28.3 bits (64), Expect = 1.6
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 222 EEPYQCSQ--CSLCFDQGSLLKAHVL----EKHEVFQCT--QCEKYYRSQSTLDVH 269
+ P+ C+ C+ + + S L+ H EK +QC CE+ + L H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP--YQCDFKDCERRFSRSDQLKRH 57
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 43.0 bits (100), Expect = 1e-05
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 224 PYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVHVSKKH 274
+ C C + F LK H+ C C+K + S + HV KKH
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 41.3 bits (98), Expect = 2e-05
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQSTLDVHV 270
P +CS+CS + L+ H ++ F+C C + S L H+
Sbjct: 2 SSGSS--GHPEKCSECSYSCSSKAALRIHERIHCTDRP--FKCNYCSFDTKQPSNLSKHM 57
Query: 271 SKKH 274
KK
Sbjct: 58 -KKF 60
Score = 39.0 bits (92), Expect = 1e-04
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
KC+ C S +L H R H + P++C+ CS Q S L H
Sbjct: 10 EKCSECSYSCSSKAALRIHE-RIHCT--DRPFKCNYCSFDTKQPSNLSKH 56
Score = 25.9 bits (58), Expect = 4.3
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 142 YQCSVCSQVFIEKKNLSKHF--------FKCL---MKFTQKKKNLSKH 178
+CS CS K L H FKC Q NLSKH
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ-PSNLSKH 56
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 41.7 bits (99), Expect = 2e-05
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 208 SLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHV------LEKHEVFQCTQCEKYYR 261
S + R H G E+PY CS C F Q LL H F C++C K +
Sbjct: 2 SSGSS-GRTHTG--EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58
Query: 262 SQSTLDVH 269
++T+ H
Sbjct: 59 RRNTMARH 66
Score = 29.4 bits (67), Expect = 0.42
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 23/89 (25%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
Y CS C + F +K+ L H K+ + F C+ C +
Sbjct: 16 YACSHCDKTFRQKQLLDMH---------FKRYHDPNFVPAA-----------FVCSKCGK 55
Query: 202 YFSLLESLETHITRRHIGICEEPYQCSQC 230
F+ ++ H G + +
Sbjct: 56 TFTRRNTMARH-ADNCAG--PDGVEGENS 81
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 41.7 bits (99), Expect = 3e-05
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHE 249
F C C +F+ +L H R H E PY C C F + L+ H EK
Sbjct: 18 FICKFCGRHFTKSYNLLIH-ERTHTD--ERPYTCDICHKAFRRQDHLRDHRYIHSKEKP- 73
Query: 250 VFQCTQCEKYYRSQSTLDVH 269
F+C +C K + TL VH
Sbjct: 74 -FKCQECGKGFCQSRTLAVH 92
Score = 37.0 bits (87), Expect = 0.001
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
+ C C + F + NL H + T + + C IC +
Sbjct: 18 FICKFCGRHFTKSYNLLIH------------------------ERTHTDERPYTCDICHK 53
Query: 202 YFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
F + L H H E+P++C +C F Q L H
Sbjct: 54 AFRRQDHLRDH-RYIHSK--EKPFKCQECGKGFCQSRTLAVH 92
Score = 35.9 bits (84), Expect = 0.003
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQSTLDVH 269
++ + C C F + L H E+ + C C K +R Q L H
Sbjct: 10 LPSKT--KKEFICKFCGRHFTKSYNLLIHERTHTDERP--YTCDICHKAFRRQDHLRDH 64
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 40.5 bits (96), Expect = 3e-05
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
F C +C F+ E L+ H R H E+PY C C+ F + LL H
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTN--EKPYPCGLCNRAFTRRDLLIRH 49
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 224 PYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQSTLDVHVSKKH 274
+ C C+ F + LK H EK + C C + + + L H K H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKP--YPCGLCNRAFTRRDLLIRHAQKIH 54
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 42.3 bits (100), Expect = 4e-05
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 16/111 (14%)
Query: 171 KKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIG------ICEEP 224
K C K+ + S C FS + L TH+T H+G
Sbjct: 5 SSGQPIKQELSC--KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 225 YQCSQCSLCFDQGSLLKAHVL----EKHEVFQCT--QCEKYYRSQSTLDVH 269
+C + F L H+ EK F C C K + L +H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKP--FPCPFPGCGKIFARSENLKIH 111
Score = 41.9 bits (99), Expect = 6e-05
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 203 FSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKH-----------EVF 251
S + ++ ++ + I + C F L HV +H
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Query: 252 QCTQCEKYYRSQSTLDVH 269
+C + K ++++ L H
Sbjct: 64 ECPREGKSFKAKYKLVNH 81
Score = 41.5 bits (98), Expect = 7e-05
Identities = 28/136 (20%), Positives = 41/136 (30%), Gaps = 28/136 (20%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
C + F L H + + H +C +
Sbjct: 26 RPKKSCDRTFSTMHELVTH----VTMEHVGGPEQNNHVCYW-----------EECPREGK 70
Query: 202 YFSLLESLETHITRRHIGICEEPYQCS--QCSLCFDQGSLLKAHVL----EKHEVFQCT- 254
F L HI R H G E+P+ C C F + LK H EK F+C
Sbjct: 71 SFKAKYKLVNHI-RVHTG--EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP--FKCEF 125
Query: 255 -QCEKYYRSQSTLDVH 269
C++ + + S H
Sbjct: 126 EGCDRRFANSSDRKKH 141
Score = 27.3 bits (61), Expect = 4.8
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 233 CFDQGSLLKAHVL-----EKHEVFQCTQCEKYYRSQSTLDVHVSKKH 274
G +K + E C++ + + L HV+ +H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 40.5 bits (96), Expect = 8e-05
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLL--KAHVLEKHEVF 251
+ C +C + F + L H+ + H G +PY+C+ C+ F K +
Sbjct: 38 YGCGVCGKKFKMKHHLVGHM-KIHTG--IKPYECNICAKRFMWRDSFHRHVTSCTKS--Y 92
Query: 252 QCTQCEKYYRSQSTL 266
+ + E+ S
Sbjct: 93 EAAKAEQNTTEASGP 107
Score = 35.1 bits (82), Expect = 0.006
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 29/101 (28%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
Y C VC + F K +L H K +G ++C IC +
Sbjct: 38 YGCGVCGKKFKMKHHLVGH---------MK---------------IHTGIKPYECNICAK 73
Query: 202 YFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKA 242
F +S H+ + Y+ ++ + S +
Sbjct: 74 RFMWRDSFHRHV---TSC--TKSYEAAKAEQNTTEASGPSS 109
Score = 34.3 bits (80), Expect = 0.011
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 203 FSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLL----KAHVLEKHEVFQCTQCEK 258
F+ + H H+G PY C C F L K H K ++C C K
Sbjct: 19 FTHKSQRDRH-MSMHLG--LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP--YECNICAK 73
Query: 259 YYRSQSTL 266
+ + +
Sbjct: 74 RFMWRDSF 81
Score = 31.6 bits (73), Expect = 0.097
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQSTLDVH 269
G ++ Y C QC F S H+ + + C C K ++ + L H
Sbjct: 3 SGSSG--DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP--YGCGVCGKKFKMKHHLVGH 56
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 38.6 bits (91), Expect = 2e-04
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+KC C F +L +H H G E+PY+C+ C F++ + LK H
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTG--EKPYRCNICGAQFNRPANLKTH 64
Score = 37.0 bits (87), Expect = 5e-04
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 208 SLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQ 263
H + ++PY+C +C F L +H EK ++C C +
Sbjct: 4 HHHHH-SHMTHS--DKPYKCDRCQASFRYKGNLASHKTVHTGEKP--YRCNICGAQFNRP 58
Query: 264 STLDVH 269
+ L H
Sbjct: 59 ANLKTH 64
Score = 25.9 bits (58), Expect = 5.4
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 27/84 (32%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
Y+C C F K NL+ H K +G ++C IC
Sbjct: 18 YKCDRCQASFRYKGNLASH------------------------KTVHTGEKPYRCNICGA 53
Query: 202 YFSLLESLETHITRRHIGICEEPY 225
F+ +L+TH TR H G E+PY
Sbjct: 54 QFNRPANLKTH-TRIHSG--EKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 37.4 bits (88), Expect = 5e-04
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 174 NLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLC 233
+ + ++ Q R +KC C + FS L H R H G E+PY+C +C
Sbjct: 5 SSGRS------EWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTG--EKPYKCDECGKA 55
Query: 234 FDQGSLLKAH 243
F Q S L H
Sbjct: 56 FIQRSHLIGH 65
Score = 33.2 bits (77), Expect = 0.014
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 208 SLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQCEKYYRSQ 263
S + Y+C +C F S L H EK ++C +C K + +
Sbjct: 5 SSGRS-EWQQRE--RRRYKCDECGKSFSHSSDLSKHRRTHTGEKP--YKCDECGKAFIQR 59
Query: 264 STLDVH 269
S L H
Sbjct: 60 SHLIGH 65
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 37.6 bits (87), Expect = 6e-04
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 180 FKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEE-PYQC-----SQCSLC 233
C K+ + S C FS + L TH+T H+G E+ + C +
Sbjct: 14 LSC--KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKS 71
Query: 234 FDQGSLLKAHVL----EKHEVFQCT 254
F L H+ EK +
Sbjct: 72 FKAKYKLVNHIRVHTGEKS--GPSS 94
Score = 33.0 bits (75), Expect = 0.022
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 18/87 (20%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFE 201
C + F L H + ++ C + +C +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN------HVCYWE---------ECPREGK 70
Query: 202 YFSLLESLETHITRRHIGICEEPYQCS 228
F L HI R H G E+ S
Sbjct: 71 SFKAKYKLVNHI-RVHTG--EKSGPSS 94
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 39.1 bits (92), Expect = 7e-04
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 29/127 (22%)
Query: 142 YQCS--VCSQVFIEKKNLSKHF----------FKCLMK-----FTQKKKNLSKHFFKCLM 184
+ C C F K N+ KHF + C + F + L H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN-QLKVH------ 125
Query: 185 KFTQSGRSSFKC--AICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKA 242
+F+ + + ++C C + FSL L+ H + H G + CS +L
Sbjct: 126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAG--YPCKKDDSCSFVGKTWTLYLK 182
Query: 243 HVLEKHE 249
HV E H+
Sbjct: 183 HVAECHQ 189
Score = 37.6 bits (88), Expect = 0.002
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 194 FKC--AICFEYFSLLESLETHITRRHIGICEEPYQCSQ--CSLCFDQGSLLKAHVL---- 245
F C C + F+ L L H H G E+ + C C L F + +K H
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHS-LTHTG--EKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Query: 246 EKHEVFQCT--QCEKYYRSQSTLDVH 269
K V+ C C K ++ + L VH
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVH 125
Score = 30.6 bits (70), Expect = 0.43
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 215 RRHIGICEEPYQCS--QCSLCFDQGSLLKAHVL----EKHEVFQCTQ--CEKYYRSQSTL 266
+ + Y CS C +++ L+AH+ EK F C + CEK + S L
Sbjct: 5 ALPVV--YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP--FPCKEEGCEKGFTSLHHL 60
Query: 267 DVH 269
H
Sbjct: 61 TRH 63
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 37.5 bits (88), Expect = 0.001
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 194 FKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVL----EK 247
C C + F ++ H+ H G + C++C F + S LK H L EK
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHL-HTH-G--PRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 248 HEVFQCT--QCEKYYRSQSTLDVH 269
FQCT C K + L H
Sbjct: 62 P--FQCTFEGCGKRFSLDFNLRTH 83
Score = 36.0 bits (84), Expect = 0.004
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 31/106 (29%)
Query: 142 YQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAI--C 199
+ C+ C + F+E L +H + +G F+C C
Sbjct: 35 HVCAECGKAFVESSKLKRH------------------------QLVHTGEKPFQCTFEGC 70
Query: 200 FEYFSLLESLETHITRRHIGICEEPYQCS--QCSLCFDQGSLLKAH 243
+ FSL +L TH+ R H G + PY C C+ F Q + LK+H
Sbjct: 71 GKRFSLDFNLRTHV-RIHTG--DRPYVCPFDGCNKKFAQSTNLKSH 113
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQG 237
+ C C + FS + L HI + H E P++C G
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTS--ERPHKCQVWVSGPSSG 54
Score = 32.6 bits (75), Expect = 0.013
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAHVLEKH---EVFQCTQCEK 258
+PY C C F + L H+ + H +C
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 35.9 bits (84), Expect = 0.002
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+ C C + FS L H R H G E+PY+C +C F Q S L H
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTG--EKPYKCLECGKAFSQNSGLINH 61
Score = 35.5 bits (83), Expect = 0.002
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLL----KAHVLEKHEVFQCTQCEKYYRSQSTLDVH 269
H G E+PY C +C F + S+L + H EK ++C +C K + S L H
Sbjct: 7 GIHSG--EKPYGCVECGKAFSRSSILVQHQRVHTGEKP--YKCLECGKAFSQNSGLINH 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 51/347 (14%), Positives = 102/347 (29%), Gaps = 95/347 (27%)
Query: 2 AFEHRCR---SSRQISRSELICVRKEGEEKEEERVETQLFQRRTRQRGVTEPETITGKRK 58
AF C+ ++R ++ + + +T E + K
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-----------HSMTLTPDEVKSLLLK 309
Query: 59 ---RSLDDSQEEVI------------VKKDGRGRPKG----SLNKVKREVVES------P 93
D EV+ +DG + +K+ ++ES P
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEP 368
Query: 94 SPKREI---------DAPI---------VKRKKKDEILLMKALDEEMFKMDEENNKEME- 134
+ R++ A I K D ++++ L + + E+ KE
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYSLVEKQPKESTI 426
Query: 135 RI-SQGLEYQCSVCSQVFIEKKNLSK-HFFKCLMKFTQKKKNLSKHFFKC----LMKFTQ 188
I S LE + + ++ + + + + K L ++F+ L
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 189 SGRSSFKCAICFE--YFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKA-HVL 245
R + F + LE I RH + GS+L L
Sbjct: 487 PERMTL-----FRMVFLD-FRFLEQKI--RHDS-----------TAWNASGSILNTLQQL 527
Query: 246 EKHEVFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNIL 292
+ ++ + C KY R + + + K + T++L
Sbjct: 528 KFYKPYICDNDPKYERLVNAI-LDFLPKIEE---NLICS--KYTDLL 568
Score = 34.8 bits (79), Expect = 0.044
Identities = 25/198 (12%), Positives = 52/198 (26%), Gaps = 58/198 (29%)
Query: 118 LDEEMFKMDEENNKEMERISQGL--EYQC-------------SVCSQVFIEKKNLSK--H 160
+D E + + + + C + + K +S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 161 FFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESLETHITRRHIGI 220
F L+ K++ + + F + +++ Y L+ ++T
Sbjct: 67 LFWTLL---SKQEEMVQKFVEEVLRI--------------NYKFLMSPIKTE-------- 101
Query: 221 CEEP------YQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVHVSKKH 274
+P Y + L D K +V + Q R + +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----G 157
Query: 275 PAGTGK------VKRDIK 286
G+GK V K
Sbjct: 158 VLGSGKTWVALDVCLSYK 175
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 35.7 bits (83), Expect = 0.002
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 194 FKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCSQ--CSLCFDQGSLLKAHVLEKHE 249
+ C C + F L+ H H + PY+C C F S LK H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQ-FSHTQ--QLPYECPHEGCDKRFSLPSRLKRHE-KVHA 57
Query: 250 ---VFQCTQCEKYYRSQSTLDVHVSKKH 274
+ C ++ + HV++ H
Sbjct: 58 GYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 54/173 (31%)
Query: 136 ISQG-LEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQK---------KKNLSKHFFKCLMK 185
+S G LE+ V + F L + F K L + T+ L F +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 186 FTQSGRSSFKCAICFEYFSLLESLETHITRR-------HIGICEEPYQCSQCSLCFDQGS 238
+ + ++ +L T H +L
Sbjct: 71 LVEPSKVG-------QFDQVLNLCLTEFENCYLEGNDIH-------------ALA---AK 107
Query: 239 LLKAH---VLEKHEVFQCTQCEKYYRSQSTLDVHVSKKHP------AGTGKVK 282
LL+ + +++ E+ + Y ++ KK G G +
Sbjct: 108 LLQENDTTLVKTKELIKN-----YITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 34.9 bits (81), Expect = 0.006
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 194 FKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHV 244
+KC C F+ + L H R+H G +P+QC C+ F + L H+
Sbjct: 46 YKCTWEGCDWRFARSDELTRHY-RKHTG--AKPFQCGVCNRSFSRSDHLALHM 95
Score = 34.5 bits (80), Expect = 0.008
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 185 KFTQSGRSS-----FKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCS--QCSLCFD 235
SG C C + ++ L+ H+ R H G E+PY+C+ C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTG--EKPYKCTWEGCDWRFA 58
Query: 236 QGSLLKAHVLEKH---EVFQCTQCEKYYRSQSTLDVHVSKKH 274
+ L H KH + FQC C + + L +H+ K+H
Sbjct: 59 RSDELTRH-YRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRH 98
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 33.8 bits (78), Expect = 0.008
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 194 FKCAI--CFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHV 244
+ C + C FS + L HI R H G ++P+QC C F + L H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHI-RIHTG--QKPFQCRICMRNFSRSDHLTTHI 69
Score = 25.7 bits (57), Expect = 6.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 187 TQSGRSSFKCAICFEYFSLLESLETHITRRH 217
+G+ F+C IC FS + L THI R H
Sbjct: 43 IHTGQKPFQCRICMRNFSRSDHLTTHI-RTH 72
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 33.7 bits (78), Expect = 0.011
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS--QCSLCFDQGSLLKAHVLEKH--- 248
A C + ++ L+ H+ R H G E+PY C C F + L H KH
Sbjct: 8 CDYAGCGKTYTKSSHLKAHL-RTHTG--EKPYHCDWDGCGWKFARSDELTRH-YRKHTGH 63
Query: 249 EVFQCTQCEKYYRSQSTLDVHVSKKH 274
FQC +C++ + L +H+ K+H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHM-KRH 88
Score = 27.9 bits (63), Expect = 1.3
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 216 RHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKH---EVFQCT--QCEKYYRSQSTLDVH 269
+ + C + + S LKAH L H + + C C + L H
Sbjct: 1 KRTA--THTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.5 bits (75), Expect = 0.012
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 214 TRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+ G E+PY+C C F Q + L+AH
Sbjct: 3 SGSSGG--EKPYKCETCGARFVQVAHLRAH 30
Score = 24.8 bits (55), Expect = 5.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+C C F++ +L H
Sbjct: 12 YKCETCGARFVQVAHLRAH 30
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 32.1 bits (74), Expect = 0.016
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 214 TRRHIGICEEPYQCSQCSLCFDQGSLLKAHV 244
+ G E+PY C C F LK+H+
Sbjct: 3 SGSSGG--EKPYPCEICGTRFRHLQTLKSHL 31
Score = 26.7 bits (60), Expect = 1.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPY 225
+ C IC F L++L++H+ R H G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHL-RIHTG--SGPS 40
Score = 25.5 bits (57), Expect = 3.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y C +C F + L H
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 32.2 bits (74), Expect = 0.016
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C QC F Q L H
Sbjct: 4 GSSGG--EKPYRCDQCGKAFSQKGSLIVH 30
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+G E+ ++C +C +CF Q S L+ H
Sbjct: 5 SSGMG--EKTWKCRECDMCFSQASSLRLH 31
Score = 27.5 bits (62), Expect = 0.72
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 187 TQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ 229
+ G ++KC C FS SL H H+G E+P S
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLH-QNVHVG--EKPSGPSS 45
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.026
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+CS C F + S L H
Sbjct: 5 SSGTG--EKPYECSICGKSFTKKSQLHVH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.026
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+CS C F S L+ H
Sbjct: 5 SSGTG--EKPYKCSDCGKSFTWKSRLRIH 31
Score = 24.4 bits (54), Expect = 10.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+CS C + F K L H
Sbjct: 13 YKCSDCGKSFTWKSRLRIH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 31.5 bits (72), Expect = 0.027
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 214 TRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+ G E PY C QC F Q L H
Sbjct: 3 SGSSGG--ETPYLCGQCGKSFTQRGSLAVH 30
Score = 25.3 bits (56), Expect = 4.8
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y C C + F ++ +L+ H
Sbjct: 12 YLCGQCGKSFTQRGSLAVH 30
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 32.5 bits (75), Expect = 0.030
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 16/80 (20%)
Query: 162 FKCLMK-----FTQKKKNLSKHFFKCLMKFTQSGRSSFKC--AICFEYFSLLESLETHIT 214
C F+ ++ L+ H K+ + SF C C + F+ + L+ H+
Sbjct: 8 MPCDFPGCGRIFSNRQ-YLNHH-----KKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM- 60
Query: 215 RRHIGICEEPYQCSQCSLCF 234
+ H Y C
Sbjct: 61 KLHSD--TRDYICEFSGPSS 78
Score = 30.6 bits (70), Expect = 0.13
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 222 EEPYQCS--QCSLCFDQGSLLKAHVLEKH---EVFQCTQ--CEKYYRSQSTLDVH 269
C C F L H +H + F C + C K + + L H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.032
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+CS C F + S L H
Sbjct: 5 SSGTG--EKPYKCSDCGKAFTRKSGLHIH 31
Score = 25.2 bits (56), Expect = 4.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
+KC+ C + F+ L H + H G E S
Sbjct: 13 YKCSDCGKAFTRKSGLHIH-QQSHTG--ERHSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.034
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+CS C F + S L H
Sbjct: 5 SSGTG--EKPYECSDCGKSFIKKSQLHVH 31
Score = 24.4 bits (54), Expect = 9.6
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
++C+ C + F L H R H G E P S
Sbjct: 13 YECSDCGKSFIKKSQLHVH-QRIHTG--ENPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.036
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E Y+CS+C F Q S L H
Sbjct: 5 SSGTG--ERHYECSECGKAFIQKSTLSMH 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 31.9 bits (72), Expect = 0.038
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVH 269
R+ I + + +CS+C + F + S L + + C +C K ++ L+
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRSTLS-----RRKTPMCEKCRKDSCQEAALNKD 58
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.1 bits (70), Expect = 0.039
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 187 TQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCS 231
+ R C IC + F + L H H G E+PY S
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHK-LSHSG--EKPYSSGPSS 47
Score = 24.9 bits (54), Expect = 6.6
Identities = 8/39 (20%), Positives = 10/39 (25%), Gaps = 6/39 (15%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAHVL----EKHEVFQCTQC 256
+ C C F L H L EK +
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKP--YSSGPS 46
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.042
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY CS+C F S L H
Sbjct: 5 SSGAG--EKPYGCSECGKAFSSKSYLIIH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.043
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P+QC +C F Q S L +H
Sbjct: 5 SSGSG--EKPFQCEECGKRFTQNSHLHSH 31
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 30.8 bits (70), Expect = 0.044
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 214 TRRHIGICEEPYQCSQCSLCFDQGSLLKAHV 244
TR G +P+QC C F + L H
Sbjct: 3 TRGSTG--IKPFQCPDCDRSFSRSDHLALHR 31
Score = 24.2 bits (53), Expect = 9.5
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 194 FKCAICFEYFSLLESLETHITRRHI 218
F+C C FS + L H +RH+
Sbjct: 12 FQCPDCDRSFSRSDHLALHR-KRHM 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.045
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+G E+ Y+C C F Q S L+ H
Sbjct: 5 SSGMG--EKCYKCDVCGKEFSQSSHLQTH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 30.6 bits (70), Expect = 0.053
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G +PY CSQC+ F S L H
Sbjct: 5 SSGTG--VKPYGCSQCAKTFSLKSQLIVH 31
Score = 24.8 bits (55), Expect = 8.1
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
+ C+ C + FSL L H R H G +P S
Sbjct: 13 YGCSQCAKTFSLKSQLIVH-QRSHTG--VKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.053
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F S L H
Sbjct: 5 SSGTG--EKPYRCAECGKAFTDRSNLFTH 31
Score = 25.2 bits (56), Expect = 5.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+C+ C + F ++ NL H
Sbjct: 13 YRCAECGKAFTDRSNLFTH 31
Score = 24.4 bits (54), Expect = 8.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
++CA C + F+ +L TH + H G E+P S
Sbjct: 13 YRCAECGKAFTDRSNLFTH-QKIHTG--EKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.5 bits (70), Expect = 0.054
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F+ S L H
Sbjct: 5 SSGTG--EKPYECNECQKAFNTKSNLMVH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.057
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G ++ ++C++C F Q S L H
Sbjct: 5 SSGAG--KKLFKCNECKKTFTQSSSLTVH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.065
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C +C ++ L H
Sbjct: 5 SSGTG--EKPYKCEKCGKGYNSKFNLDMH 31
Score = 25.2 bits (56), Expect = 5.7
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ 229
+KC C + ++ +L+ H + H G E P S
Sbjct: 13 YKCEKCGKGYNSKFNLDMH-QKVHTG--ERPSGPSS 45
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 30.2 bits (69), Expect = 0.067
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F SLL H
Sbjct: 5 SSGSG--EKPYECNECGKAFIWKSLLIVH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.069
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F S L H
Sbjct: 5 SSGTG--EKPYKCNECGKAFRARSSLAIH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.072
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+CS C F L H
Sbjct: 5 SSGTG--EKPYECSVCGKAFSHRQSLSVH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.074
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C C F GS L H
Sbjct: 5 SSGTG--EKPYKCDVCHKSFRYGSSLTVH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.076
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G PY+CSQC F L H
Sbjct: 5 SSGAG--VNPYKCSQCEKSFSGKLRLLVH 31
Score = 27.5 bits (62), Expect = 0.65
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 187 TQSGRSSFKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ 229
+ +G + +KC+ C + FS L H R H E+P S
Sbjct: 6 SGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTR--EKPSGPSS 45
Score = 25.6 bits (57), Expect = 3.1
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 GSLLKAHVLEKHEVFQCTQCEKYYRSQSTLDVH 269
GS + ++C+QCEK + + L VH
Sbjct: 1 GSSGSSGAGVNP--YKCSQCEKSFSGKLRLLVH 31
Score = 24.4 bits (54), Expect = 9.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+CS C + F K L H
Sbjct: 13 YKCSQCEKSFSGKLRLLVH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.078
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C +C + + L H
Sbjct: 5 SSGSG--EKPYKCVECGKGYKRRLDLDFH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.080
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++C +C F Q S L +H
Sbjct: 5 SSGSG--EKPFKCEECGKRFTQNSQLHSH 31
Score = 25.9 bits (58), Expect = 3.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ 229
FKC C + F+ L +H R H G E+P S
Sbjct: 13 FKCEECGKRFTQNSQLHSH-QRVHTG--EKPSGPSS 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.083
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C +C F L H
Sbjct: 5 SSGTG--EKPYKCEECGKGFICRRDLYTH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 30.2 bits (69), Expect = 0.084
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY C +C F S L H
Sbjct: 5 SSGTG--EKPYNCKECGKSFRWASCLLKH 31
Score = 24.8 bits (55), Expect = 6.6
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ 229
+ C C + F L H R H G E+P S
Sbjct: 13 YNCKECGKSFRWASCLLKH-QRVHSG--EKPSGPSS 45
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.085
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F Q S L H
Sbjct: 5 SSGTG--EKPYKCNECGKAFSQTSKLARH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 30.2 bits (69), Expect = 0.087
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++C +C F + S L H
Sbjct: 5 SSGTG--EKPFKCVECGKGFSRRSALNVH 31
Score = 26.3 bits (59), Expect = 2.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
FKC C + FS +L H + H G E+P S
Sbjct: 13 FKCVECGKGFSRRSALNVH-HKLHTG--EKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.088
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+ Y C +C F + L H
Sbjct: 5 SSGTG--EKLYNCKECGKSFSRAPCLLKH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.089
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G + ++C++C F + S L H
Sbjct: 5 SSGTG--GKHFECTECGKAFTRKSTLSMH 31
Score = 25.6 bits (57), Expect = 4.1
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ 229
F+C C + F+ +L H + H G E+P S
Sbjct: 13 FECTECGKAFTRKSTLSMH-QKIHTG--EKPSGPSS 45
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 30.2 bits (69), Expect = 0.090
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G ++PY+C +C F Q + L H
Sbjct: 5 SSGTG--KKPYECIECGKAFIQNTSLIRH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 30.2 bits (69), Expect = 0.091
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++C++C F S L H
Sbjct: 5 SSGTG--EKPFECAECGKSFSISSQLATH 31
Score = 25.5 bits (57), Expect = 3.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
F+CA C + FS+ L TH R H G E+P S
Sbjct: 13 FECAECGKSFSISSQLATH-QRIHTG--EKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.1 bits (69), Expect = 0.092
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++CS+C F+ S L H
Sbjct: 5 SSGTG--EKPFECSECQKAFNTKSNLIVH 31
Score = 25.1 bits (56), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
F+C+ C + F+ +L H R H G E+P S
Sbjct: 13 FECSECQKAFNTKSNLIVH-QRTHTG--EKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.093
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY C++C F Q S+L AH
Sbjct: 5 SSGSG--EKPYGCNECGKTFSQKSILSAH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.093
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E Y+CS+C F + S L H
Sbjct: 5 SSGTG--ERHYECSECGKAFARKSTLIMH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.096
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G +PYQC++C F Q S L H
Sbjct: 5 SSGTG--GKPYQCNECGKAFSQTSKLARH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.096
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C CS F Q + L H
Sbjct: 5 SSGTG--EKPYECKVCSKAFTQKAHLAQH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.098
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F Q S L H
Sbjct: 5 SSGTG--EKPYKCNECGKVFTQNSHLANH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 29.8 bits (68), Expect = 0.10
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G ++P++C+ C F L H
Sbjct: 5 SSGTG--QKPFECTHCGKSFRAKGNLVTH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.10
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E PY C+ C F S L H
Sbjct: 5 SSGTG--ERPYICTVCGKAFTDRSNLIKH 31
Score = 25.1 bits (56), Expect = 5.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y C+VC + F ++ NL KH
Sbjct: 13 YICTVCGKAFTDRSNLIKH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 217 HIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P+ CS C F S L H
Sbjct: 5 SSG--EKPFGCSCCEKAFSSKSYLLVH 29
Score = 26.3 bits (59), Expect = 1.9
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
F C+ C + FS L H + H E+P S
Sbjct: 11 FGCSCCEKAFSSKSYLLVH-QQTHAE--EKPSGPS 42
Score = 24.8 bits (55), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 251 FQCTQCEKYYRSQSTLDVH 269
F C+ CEK + S+S L VH
Sbjct: 11 FGCSCCEKAFSSKSYLLVH 29
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E P+ CS+C F + L H
Sbjct: 5 SSGTG--ENPFICSECGKVFTHKTNLIIH 31
Score = 25.5 bits (57), Expect = 3.9
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCS 228
F C+ C + F+ +L H + H G E P S
Sbjct: 13 FICSECGKVFTHKTNLIIH-QKIHTG--ERPSGPS 44
Score = 25.1 bits (56), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
+ CS C +VF K NL H
Sbjct: 13 FICSECGKVFTHKTNLIIH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C+QC F S L H
Sbjct: 5 SSGTG--EKPYECNQCGKAFSVRSSLTTH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G +PY C++C F S L H
Sbjct: 5 SSGTG--MKPYVCNECGKAFRSKSYLIIH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (67), Expect = 0.12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAH 243
E P++CS+C F Q + L H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQH 31
Score = 24.8 bits (54), Expect = 7.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
++CS C +VF ++ L +H
Sbjct: 13 FKCSKCDRVFTQRNYLVQH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY C++C F S L H
Sbjct: 5 SSGTG--EKPYICAECGKAFTIRSNLIKH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P+ C C F L H
Sbjct: 5 SSGTG--EKPFDCIDCGKAFSDHIGLNQH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY C +C F S L+ H
Sbjct: 5 SSGTG--EKPYNCEECGKAFIHDSQLQEH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G + PY+C +C F S L H
Sbjct: 5 SSGTG--QRPYECIECGKAFKTKSSLICH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C +C F Q + L H
Sbjct: 5 SSGTG--EKPYRCGECGKAFAQKANLTQH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.15
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++C +C F Q L +H
Sbjct: 5 SSGSG--EKPFKCKECGKAFRQNIHLASH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F Q S L H
Sbjct: 5 SSGTG--EKPYKCNECGKVFTQNSHLARH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.5 bits (67), Expect = 0.16
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P+QC +C + F L H
Sbjct: 5 SSGTG--EKPFQCKECGMNFSWSCSLFKH 31
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix,
DNA-binding, transcription factor; 2.20A {Vibrio
cholerae} PDB: 3t1b_B
Length = 291
Score = 32.5 bits (75), Expect = 0.16
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 30 EERVETQLFQRRTRQRGVTEPETITGKR-----KRSLDDSQE-EVIVKKDGRGRPKGSL 82
E+ + +L R R+ +TE G+R L+ + D G +
Sbjct: 40 EDSLNLRLLNRHARKLTLTE----AGERFYKDCSPLLERLASMTEEI-TDECRGASGRI 93
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (67), Expect = 0.17
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++C +C F S +H
Sbjct: 5 SSGSG--EKPFKCEECGKGFYTNSQCYSH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.17
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G ++PY+C++C F Q S L H
Sbjct: 5 SSGTG--KKPYKCNECGKVFTQNSHLARH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.17
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++C +C F S L H
Sbjct: 5 SSGTG--EKPHECRECGKSFSFNSQLIVH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.18
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C C F + L H
Sbjct: 5 SSGTG--EKPYECDVCRKAFSHHASLTQH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.18
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY C++C F Q S L H
Sbjct: 5 SSGTG--EKPYICNECGKSFIQKSHLNRH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.19
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G +PY C++C F S L H
Sbjct: 5 SSGTG--VKPYMCNECGKAFSVYSSLTTH 31
>3hhg_A Transcriptional regulator, LYSR family; transcription factor,
structur genomics, oxford protein production facility,
OPPF; 3.20A {Neisseria meningitidis serogroup B}
Length = 306
Score = 32.1 bits (74), Expect = 0.19
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 24/79 (30%)
Query: 10 SRQISRSELICVRKEGEEKEEERVETQLFQRRTRQRGVTEPETITGKR-----KRSLDDS 64
SR + R L EE++ L R TRQ +TE G + +R L +
Sbjct: 35 SRIVKR--L-----------EEKLGVNLLNRTTRQLSLTE----EGAQYFRRAQRILQEM 77
Query: 65 QE-EVIVKKDGRGRPKGSL 82
E + P+G L
Sbjct: 78 AAAETEM-LAVHEIPQGVL 95
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.19
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F Q S L H
Sbjct: 5 SSGSG--EKPYKCNECGKVFTQNSHLTNH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.19
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F Q S L H
Sbjct: 5 SSGTG--EKPYKCNECGKVFTQNSHLVRH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.20
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F Q S L H
Sbjct: 5 SSGTG--EKPYKCNECGKVFTQNSHLARH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.21
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P +C++C F S L H
Sbjct: 5 SSGTG--EKPCKCTECGKAFCWKSQLIMH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 29.0 bits (66), Expect = 0.22
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C +C F Q + L H
Sbjct: 5 SSGTG--EKPYECKECGKAFSQTTHLIQH 31
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.5 bits (73), Expect = 0.23
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 247 KHEVFQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRSARNDST 306
+ C C + + S L H+ H + N I + R
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSFLTAWDDIR--IL 170
Query: 307 KATVKTETEVKVKIEPVADIP 327
V +++ VA+ P
Sbjct: 171 SPDVSSKSLSAYLDSAVANGP 191
Score = 32.1 bits (72), Expect = 0.33
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 48 TEPETITGKRKRSLDDSQEEVIVKKDGRGRPKGSLNKVKREVVESPSPKREIDAPIVKRK 107
P + T + + D +Q++ + G ++ +PS D I+ R
Sbjct: 31 NSPPSTTSPNQAAADANQQQAGIVSSQSGP--NAVGDS------APSSSVNNDGDIITRP 82
Query: 108 KKDEILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVFIEKKNLSKHF 161
D I + + + + + ++ I Y C+VC+ F LS+H
Sbjct: 83 TSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHL 136
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.23
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C +C F S H
Sbjct: 5 SSGTG--EKPYKCMECGKAFGDNSSCTQH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.23
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E PY+C +C F + L +H
Sbjct: 5 SSGTG--ENPYECHECGKAFSRKYQLISH 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 28.7 bits (65), Expect = 0.23
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAH 243
+ Y+C +C F Q L H
Sbjct: 8 QRVYECQECGKSFRQKGSLTLH 29
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2,
protein structure initiative, MI center for STR uctural
genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Length = 300
Score = 31.7 bits (73), Expect = 0.26
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 30 EERVETQLFQRRTRQRGVTEPETITGKR-----KRSLDDSQE-EVIVKKDGRGRPKGSL 82
E + T+L R TR+ VT G R L D E + + + PKG L
Sbjct: 37 EAHLRTKLLNRTTRRVLVTP----DGALYYERAARLLSDLDELDGSL-STAQSLPKGRL 90
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.26
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++C C F S L H
Sbjct: 5 SSGTG--EKPFKCDICGKSFCGRSRLNRH 31
Score = 24.8 bits (55), Expect = 6.8
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
++C +C + F + L++H
Sbjct: 13 FKCDICGKSFCGRSRLNRH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.27
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C +C F + S L H
Sbjct: 5 SSGTG--EKPYKCHECGKVFRRNSHLARH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 28.6 bits (65), Expect = 0.27
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+ Y+C++C F + S L H
Sbjct: 5 SSGTG--EKRYKCNECGKVFSRNSQLSQH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.29
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+P++C +C ++Q L H
Sbjct: 5 SSGTG--EKPFKCGECGKSYNQRVHLTQH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.31
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F S L H
Sbjct: 5 SSGTG--EKPYKCNECGKVFRHNSYLSRH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.32
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY C+ C F + L H
Sbjct: 5 SSGTG--EKPYSCNVCGKAFVLSAHLNQH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.33
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY C C F + L H
Sbjct: 5 SSGSG--EKPYVCDYCGKAFGLSAELVRH 31
Score = 25.6 bits (57), Expect = 3.5
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ 229
+ C C + F L L H R H G E+P S
Sbjct: 13 YVCDYCGKAFGLSAELVRH-QRIHTG--EKPSGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.34
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C++C F S L H
Sbjct: 5 SSGTG--EKPYKCNECGKAFRAHSNLTTH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.35
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E P++C++C F Q + L H
Sbjct: 5 SSGTG--ERPHKCNECGKSFIQSAHLIQH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.35
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+CS+C F + + L H
Sbjct: 5 SSGSG--EKPYKCSECGKAFHRHTHLNEH 31
Score = 24.8 bits (55), Expect = 8.2
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQ 229
+KC+ C + F L H R H G P S
Sbjct: 13 YKCSECGKAFHRHTHLNEH-RRIHTG--YRPSGPSS 45
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.36
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PY+C C F S L H
Sbjct: 5 SSGTG--EKPYKCQVCGKAFRVSSHLVQH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 28.2 bits (64), Expect = 0.38
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E PY+CS+C F++ L +H
Sbjct: 3 SGSSG--ENPYECSECGKAFNRKDQLISH 29
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.39
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E ++CS C F Q S H
Sbjct: 5 SSGHG--ERGHRCSDCGKFFLQASNFIQH 31
Score = 24.4 bits (54), Expect = 8.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
++CS C + F++ N +H
Sbjct: 13 HRCSDCGKFFLQASNFIQH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.41
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+ +QC +C F S L H
Sbjct: 5 SSGSS--TKSHQCHECGRGFTLKSHLNQH 31
Score = 25.2 bits (56), Expect = 4.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
+QC C + F K +L++H
Sbjct: 13 HQCHECGRGFTLKSHLNQH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.42
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 217 HIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+ + C +C F S L+ H
Sbjct: 7 GSG--EKSHTCDECGKNFCYISALRIH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.42
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G ++PY+C +C F Q L H
Sbjct: 5 SSGSG--KKPYECKECRKTFIQIGHLNQH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.47
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
E+PY+C C +++ L H
Sbjct: 5 SSGSV--EKPYKCEDCGKGYNRRLNLDMH 31
Score = 24.4 bits (54), Expect = 9.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+C C + + + NL H
Sbjct: 13 YKCEDCGKGYNRRLNLDMH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.49
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 217 HIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E P++C++C F + S L H
Sbjct: 7 GSG--ERPFKCNECGKGFGRRSHLAGH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.53
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E+PYQCS+C F L H
Sbjct: 5 SSGEG--EKPYQCSECGKSFSGSYRLTQH 31
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.1 bits (64), Expect = 0.63
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 225 YQCSQCSLCFDQGSL-LKAHVLEKH---EVFQCTQCEKYYRSQSTLDVHVSKKHPA 276
C C++ + + LK H+ + +C C K ++S++ L+ H +H A
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.1 bits (64), Expect = 0.69
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 225 YQCSQCS-LCFDQGSLLKAHVLE-KHEVFQCTQCEKYYRSQSTLDVHVSKKHPA 276
C C + LK H+ K E+F C C K RS + + HV H +
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 27.3 bits (61), Expect = 0.75
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAH 243
E+PY C++C F + L H
Sbjct: 8 EKPYSCAECKETFSDNNRLVQH 29
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 31.0 bits (69), Expect = 0.77
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 187 TQSGRSSFKCAICFEYFSLLESLETHITRRHIG 219
T S ++C +C L+ H+ +
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 29.8 bits (66), Expect = 1.8
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 251 FQCTQCEKYYRSQSTLDVHVSKKHPAGTGKVKRDIKPNTNILTVTPNRRSARNDSTKATV 310
+QC C S LD HV+ G + ++ I S+ + V
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHGLHGNMTLT-----SSEIQRHITEFISSWQNHPIVQV 235
Query: 311 KTETEVK 317
+ E K
Sbjct: 236 SADVENK 242
Score = 29.4 bits (65), Expect = 1.8
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 92 SPSPKREIDAPIVKRKKKDEILLMKALDEEMFKMDEENNKEMERISQGLEYQCSVCSQVF 151
S S + + ++ I + S G YQC VCS V
Sbjct: 134 SRSGNVDNEGGSNQKPMSTRI---AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVL 190
Query: 152 IEKKNLSKH 160
+L H
Sbjct: 191 FSPLDLDAH 199
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.5 bits (62), Expect = 0.85
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E PY+C +C F + L +H
Sbjct: 5 SSGTG--ENPYECCECGKVFSRKDQLVSH 31
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 27.3 bits (60), Expect = 1.4
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 199 CFEYFSLLESLETHITRRHIGICE----EPYQC--SQCS-LCFDQGSLLKAHVLEKH 248
C E S L L+ H+ + H+ EP C C L D S++ H+ +H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVN-HINAQH 64
Score = 26.2 bits (57), Expect = 3.2
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 228 SQCSLCFDQGSLLKAHVLEKH---------EVFQC--TQCEKYYRSQSTLDVHVSKKH 274
+C L+ H+L+ H E C C+ +++ H++ +H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.8 bits (60), Expect = 1.5
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+ Y C++C F + L H
Sbjct: 5 SSGTD--SKSYNCNECGKAFTRIFHLTRH 31
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 27.7 bits (62), Expect = 1.5
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 17/69 (24%)
Query: 133 MERISQGLEYQCSVCSQVFIEKKNLSKHFFKCLMKFTQKKKNLSKHFF--KCLMKFTQSG 190
++ + + LE C +C + F E++ K C H +CL K S
Sbjct: 9 LDALREVLE--CPICMESFTEEQLRPK-LLHCG------------HTICRQCLEKLLASS 53
Query: 191 RSSFKCAIC 199
+ +C C
Sbjct: 54 INGVRCPFC 62
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.9 bits (56), Expect = 2.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 225 YQCSQCSLCFDQGSLLKAHVLEKH 248
Y CSQC + LK HV++KH
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKH 33
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 2.4
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 217 HIGICEEPYQCSQCSLCFDQGSLLKAH 243
G E PY C++C F + S L H
Sbjct: 7 GSG--ERPYGCNECGKNFGRHSHLIEH 31
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.3 bits (57), Expect = 2.6
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 246 EKHEVFQCTQCEKYYRSQSTLDVHVSKKHPAG-TGKVKRDIKPNT 289
++ + + C C K Y+++ L H + H A G+ K D +P T
Sbjct: 3 DRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPT 47
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.6 bits (56), Expect = 2.8
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 224 PYQCSQCSLCFDQGSLLKAHVLEKHE 249
Y C C+ F + LL H + H
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHS 27
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 28.8 bits (64), Expect = 2.8
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 191 RSSFKCAIC------FEYFSLLESLE----THITRRHIGICEEPYQCSQCSL--CFDQGS 238
+S+ C C F+ F L +L + + + + +L C + +
Sbjct: 163 KSTLVCPECAKVSVTFDPFCYL-TLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFT 221
Query: 239 LLKAHVLEKHEVFQCTQCEKYYRSQSTLDVH 269
L +H+ + C C+K+ ++ D+
Sbjct: 222 --TMETLGEHDPWYCPNCKKHQQATKKFDLW 250
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural
genomics, P protein structure initiative; HET: MSE;
1.78A {Helicobacter pylori}
Length = 99
Score = 26.9 bits (60), Expect = 3.6
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 98 EIDAPIVKRKKKDEILLMKALDEEMFKMDEENNKEMERISQGL 140
+ID +++ K+ +I LM AL++ ++E +
Sbjct: 54 QIDDSLLEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNF 96
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.9 bits (61), Expect = 4.0
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 199 CFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKH 248
+Y L S+ R++ E+ Q + D L+ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 25.8 bits (56), Expect = 4.2
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 225 YQCSQCSLCFDQGSLLKAHVLEK--HEVFQCTQCEKYYRSQSTLDVHVSK 272
Y C +C + + S+LK H+ + CT C ++++ L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 25.8 bits (56), Expect = 4.5
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHV 244
+ C C L+ HI R H PY C+ C+ F L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHI-RTHTD--VRPYHCTYCNFSFKTKGNLTKHM 49
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.1 bits (54), Expect = 4.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+C +C + F+EK LS+H
Sbjct: 2 YKCGLCERSFVEKSALSRH 20
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 28.3 bits (62), Expect = 4.7
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 8/120 (6%)
Query: 140 LEYQCSVCSQVFIEKKNLSKHF--FKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCA 197
+Y+ +V + + +++ + K F+ + R+ +C
Sbjct: 377 CQYKLAVERYEWNKLQSVKSIVPMVHLSWNMARNIKVSDPKLFEMIKYCLL--RTLKQCQ 434
Query: 198 ICFEYFSLLESLETHITRRHIGICEEPYQCSQC-SLCFDQGSLLKAHVLEKHEVFQCTQC 256
E L + I E + CS C FD + K + C C
Sbjct: 435 TLREA---LIAAGKEIIWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDC 491
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 27.8 bits (62), Expect = 4.8
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 191 RSSFKCAIC------FEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHV 244
+SS C C F+ F L SL I + Y C K V
Sbjct: 163 KSSLTCTDCGYCSTVFDPFWDL-SLP---------IAKRGYPEVTLMDCMR--LFTKEDV 210
Query: 245 LEKHEVFQCTQCEKYYRSQSTLDVH 269
L+ E C +C R +
Sbjct: 211 LDGDEKPTCCRCRGRKRCIKKFSIQ 235
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.9 bits (53), Expect = 6.1
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 142 YQCSVCSQVFIEKKNLSKHF 161
Y C VC F K +S H
Sbjct: 11 YSCPVCGLRFKRKDRMSYHV 30
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 27.0 bits (59), Expect = 7.3
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 24/138 (17%)
Query: 141 EYQCSVCSQVFIEKKNLS-KHFF--KCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCA 197
+Y+C +C E H F C++K + KC
Sbjct: 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------------------HKCP 57
Query: 198 ICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCE 257
+ E + + +R I C + L + + C QC+
Sbjct: 58 VDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQ 117
Query: 258 KYYRSQSTLDVHVSKKHP 275
+ ++ + +++H+ K P
Sbjct: 118 RPFQ-KFHINIHILKDCP 134
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 27.3 bits (60), Expect = 7.5
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 16/85 (18%)
Query: 191 RSSFKCAIC------FEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHV 244
+S KC C FE F L SL G CF+ K
Sbjct: 171 KSCLKCQACGYRSTTFEVFCDL-SLPIPKKGFAGGKVSLR-------DCFN--LFTKEEE 220
Query: 245 LEKHEVFQCTQCEKYYRSQSTLDVH 269
LE C +C + RS L V
Sbjct: 221 LESENAPVCDRCRQKTRSTKKLTVQ 245
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 27.2 bits (61), Expect = 7.7
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 49 EPETITGKRKRSLDDSQEEVIVKKDGRGRP 78
+P+++ K KR++ DS E +++ D +
Sbjct: 224 DPKSVVKKIKRAMTDSDEPALIRYDVEKKA 253
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure
initiative, southeast COLL for structural genomics,
secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Length = 143
Score = 26.7 bits (59), Expect = 8.1
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 98 EIDAPIVKRKKKD--EILLMKALDEEMFKMDEENNKEMERISQGL 140
I +V + + L++ A++E + K DE E+ +I+ GL
Sbjct: 92 TIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKITGGL 136
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 26.2 bits (57), Expect = 10.0
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 251 FQCTQCEKYYRSQSTLDVHV-SKKH 274
+C C +Y+ + L H SK H
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDH 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.372
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,787,716
Number of extensions: 282628
Number of successful extensions: 1428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1275
Number of HSP's successfully gapped: 345
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)