RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7466
(338 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.8 bits (78), Expect = 0.001
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKH 248
R H G E+PY+C C F Q +K H+L+KH
Sbjct: 1 RTHSG--EKPYECYICHARFTQSGTMKMHILQKH 32
Score = 27.6 bits (62), Expect = 0.22
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 251 FQCTQCEKYYRSQSTLDVHVSKKH 274
++C C + T+ +H+ +KH
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
Score = 24.6 bits (54), Expect = 2.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 187 TQSGRSSFKCAICFEYFSLLESLETHITRRH 217
T SG ++C IC F+ +++ HI ++H
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 23.8 bits (52), Expect = 4.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+C +C F + + H
Sbjct: 9 YECYICHARFTQSGTMKMH 27
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 33.9 bits (77), Expect = 0.002
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAHVLEKH--EVFQCTQCEKYYRSQSTLDVH 269
++ Y C QC F S H+ + C C K ++ + L H
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
Score = 24.6 bits (53), Expect = 4.1
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+ C C + F+ + H++ PY C C F L H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL---GLRPYGCGVCGKKFKMKHHLVGH 49
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 30.1 bits (68), Expect = 0.029
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 214 TRRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
TR G +P+QC C F + L H
Sbjct: 3 TRGSTG--IKPFQCPDCDRSFSRSDHLALH 30
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.6 bits (67), Expect = 0.044
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
R H G E+PY CS C F Q LL H
Sbjct: 1 RTHTG--EKPYACSHCDKTFRQKQLLDMH 27
Score = 24.6 bits (54), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 243 HVLEKHEVFQCTQCEKYYRSQSTLDVHVSKKH 274
H EK + C+ C+K +R + LD+H + H
Sbjct: 3 HTGEKP--YACSHCDKTFRQKQLLDMHFKRYH 32
Score = 24.2 bits (53), Expect = 3.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y CS C + F +K+ L H
Sbjct: 9 YACSHCDKTFRQKQLLDMH 27
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 29.6 bits (67), Expect = 0.049
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 194 FKCAICFEYFSLLESLETHITRRHIGICEEPYQC 227
+ C C + FS + L HI + H E P++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTS--ERPHKC 37
Score = 28.0 bits (63), Expect = 0.16
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAHVLEKH 248
+PY C C F + L H+ + H
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 25.3 bits (56), Expect = 1.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 251 FQCTQCEKYYRSQSTLDVHVSKKH 274
+ C C K + L+ H+ + H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 24.2 bits (53), Expect = 3.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y C C + F +L+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGH 24
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.1 bits (66), Expect = 0.058
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 217 HIGICEEPYQCSQCSLCFDQGSLLKAH 243
H G E+PY C +C F + S+L H
Sbjct: 2 HSG--EKPYGCVECGKAFSRSSILVQH 26
Score = 24.9 bits (55), Expect = 1.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y C C + F L +H
Sbjct: 8 YGCVECGKAFSRSSILVQH 26
Score = 23.3 bits (51), Expect = 7.2
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 251 FQCTQCEKYYRSQSTLDVH 269
+ C +C K + S L H
Sbjct: 8 YGCVECGKAFSRSSILVQH 26
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 28.7 bits (65), Expect = 0.067
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAH 243
++P+QC C F + L H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTH 22
Score = 24.5 bits (54), Expect = 2.1
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
+QC +C + F +L+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTH 22
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 26
Score = 27.9 bits (61), Expect = 0.13
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 140 LEYQCSVCSQVFIEKKNLSKHFFK 163
+ Y+CS CSQ F++KK+L H K
Sbjct: 1 MPYKCSSCSQQFMQKKDLQSHMIK 24
Score = 24.8 bits (53), Expect = 2.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 224 PYQCSQCSLCFDQGSLLKAHVLEKH 248
PY+CS CS F Q L++H+++ H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMIKLH 26
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 27.4 bits (61), Expect = 0.22
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 215 RRHIGICEEPYQCSQCSLCFDQGSLLKAH 243
+ Y+C +C F S L H
Sbjct: 5 WQQRE--RRRYKCDECGKSFSHSSDLSKH 31
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 28.1 bits (63), Expect = 0.24
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 251 FQCTQCEKYYRSQSTLDVHV-SKKH 274
+C C +Y+ + L H SK H
Sbjct: 16 HRCLACARYFIDSTNLKTHFRSKDH 40
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.4 bits (59), Expect = 0.42
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 224 PYQCSQCSLCFDQGSLLKAH 243
+ C C+ F + LK H
Sbjct: 2 SFVCEVCTRAFARQEHLKRH 21
Score = 23.7 bits (52), Expect = 4.5
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
+ C VC++ F +++L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRH 21
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 29.6 bits (65), Expect = 0.44
Identities = 20/172 (11%), Positives = 42/172 (24%), Gaps = 9/172 (5%)
Query: 97 REIDAPIVKRKKKDEILLMKALD---EEMFKMDEENNKEM----ERISQGLEYQCSVCSQ 149
+E+ P + + L E+MF+ + + + + + +
Sbjct: 35 QEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDS 94
Query: 150 VFIEKKNLSKHFFKCLMKFTQKKKNLSKHFFKCLMKFTQSGRSSFKCAICFEYFSLLESL 209
K F K + +N +S + L
Sbjct: 95 TSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSL--ALQVIEQLGLN 152
Query: 210 ETHITRRHIGICEEPYQCSQCSLCFDQGSLLKAHVLEKHEVFQCTQCEKYYR 261
+T + Q + S LLK + + + K R
Sbjct: 153 KTVFEIGSAKFFQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELR 204
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 26.0 bits (58), Expect = 0.55
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 224 PYQCSQCSLCFDQGSLLKAH 243
PY+C +C F Q S L H
Sbjct: 2 PYKCLECGKAFSQNSGLINH 21
Score = 23.3 bits (51), Expect = 5.0
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+C C + F + L H
Sbjct: 3 YKCLECGKAFSQNSGLINH 21
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.9 bits (57), Expect = 0.79
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 224 PYQCSQCSLCFDQGSLLKAHVLEKH 248
PY C C+ F + LL H + H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIH 25
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.4 bits (56), Expect = 1.2
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 224 PYQCSQCSLCFDQGSLLKAH 243
+ C +C F + L H
Sbjct: 2 KFACPECPKRFMRSDHLSKH 21
Score = 23.5 bits (51), Expect = 5.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
+ C C + F+ +LSKH
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.3 bits (52), Expect = 2.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 249 EVFQCTQCEKYYRSQSTLDVHVSKKH 274
E+F C C K RS + + HV H
Sbjct: 1 EMFTCHHCGKQLRSLAGMKYHVMANH 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 24.3 bits (53), Expect = 3.0
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 222 EEPYQCSQCSLCFDQGSLLKAH 243
+ P+ C C F + H
Sbjct: 5 KRPFVCRICLSAFTTKANCARH 26
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 24.3 bits (52), Expect = 3.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 142 YQCSVCSQVFIEKKNLSKH 160
Y+C +C + F+EK LS+H
Sbjct: 1 YKCGLCERSFVEKSALSRH 19
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 220
Score = 26.9 bits (58), Expect = 3.1
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 20 CVRKEGEEKEEERVETQLFQRRTRQRGVTEPETITGKRKRSLDDSQEEVIVKKDGR---- 75
+ + + E VET+ + E I ++S+ DS E ++VK
Sbjct: 141 PLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATY 200
Query: 76 --GRPKGSLNKVKREVVE 91
+ + K+K++ ++
Sbjct: 201 EIAKRSHNWLKLKKDYLD 218
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 27.1 bits (60), Expect = 3.2
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 250 VFQCTQCEKYYRSQSTLDVHVSK---KHPAGTGKVKRD 284
++ C C KY +S++ L H+ K HP +++
Sbjct: 31 LYLCEFCLKYMKSRTILQQHMKKCGWFHPPANEIYRKN 68
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 26.7 bits (59), Expect = 3.5
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 250 VFQCTQCEKYYRSQSTLDVHVSK---KHPAGTGKVKRD 284
++ +Y+ S+ + + K +HP G + D
Sbjct: 34 IYIDDFTLQYFGSKKQYERYRKKCTLRHPPGNEIYRDD 71
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.2 bits (57), Expect = 4.4
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 4 EHRCRSSRQISRSELICVRKEGEEKEEERVETQLFQRRTRQRGVTEP 50
++ R R +R + ++ G K E +ET+ +R EP
Sbjct: 118 DYGYRRLRAKARLK-FLIKDWGIAKFREVLETEYLKRPLIDGPAPEP 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.372
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,198,257
Number of extensions: 58818
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 78
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)