BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7467
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
Length = 482
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 132/179 (73%), Gaps = 9/179 (5%)
Query: 126 NTTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYP 185
T GFF+KD IK F+V+ + +P++ ++YII++GG+ F+Y W+F +++SL L+TIY
Sbjct: 157 QQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYA 216
Query: 186 EFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKR 245
++IAPLFDK+TPLP+G+LK IE ++ S+ FPL K+YVVEGSKRS HSNAYFYGFFKNKR
Sbjct: 217 DYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKR 276
Query: 246 IVLFDTLLKDYVPLNAD---------KKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295
IVLFDTLL++Y LN D + ++ G+SE + + K+GC EEVLAVL H
Sbjct: 277 IVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGH 335
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 42 WA-VNLKMEFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAES 100
WA ++ E E +IF ++ FSW V+L+E +L+ RQRR+Y TT VP ++ MD+E+
Sbjct: 4 WASLDALWEMPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSET 63
Query: 101 FEKSRRYSLDKNVFSMFKETVSNVMNT 127
FEKSR Y LDK+ FS + S T
Sbjct: 64 FEKSRLYQLDKSTFSFWSGLYSETEGT 90
>pdb|2YPT|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
Length = 482
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 132/179 (73%), Gaps = 9/179 (5%)
Query: 126 NTTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYP 185
T GFF+KD IK F+V+ + +P++ ++YII++GG+ F+Y W+F +++SL L+TIY
Sbjct: 157 QQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYA 216
Query: 186 EFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKR 245
++IAPLFDK+TPLP+G+LK IE ++ S+ FPL K+YVVEGSKRS HSNAYFYGFFKNKR
Sbjct: 217 DYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKR 276
Query: 246 IVLFDTLLKDYVPLNAD---------KKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295
IVLFDTLL++Y LN D + ++ G+SE + + K+GC EEVLAVL H
Sbjct: 277 IVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGH 335
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 42 WA-VNLKMEFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAES 100
WA ++ E E +IF ++ FSW V+L+E +L+ RQRR+Y TT VP ++ MD+E+
Sbjct: 4 WASLDALWEMPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSET 63
Query: 101 FEKSRRYSLDKNVFSMFKETVSNVMNT 127
FEKSR Y LDK+ FS + S T
Sbjct: 64 FEKSRLYQLDKSTFSFWSGLYSETEGT 90
>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
Length = 461
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 128/267 (47%), Gaps = 73/267 (27%)
Query: 60 IIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYSLDKNVFSMFKE 119
I FS F FE YL+ RQ + ET + P + +D E+F KSR YS K FS+F +
Sbjct: 19 ISAFSIAQFSFESYLTYRQYQKLSETKL-PPVLEDEIDDETFHKSRNYSRAKAKFSIFSD 77
Query: 120 T---VSNVMNTTYGFFVK-----------------------DQIKSFI-----VSLILSI 148
++ Y FF K Q F+ +S ++ +
Sbjct: 78 IYNLAQKLVFIKYDFFPKIWHMAVTLSNAVLPVRFHMVSTVAQSLCFLGLLSSMSTLVDL 137
Query: 149 PLTGAVVYIIQ--------------------------VGGNMVFL-----------YLW- 170
PL+ ++++ +GG +++L +LW
Sbjct: 138 PLSYYSHFVLEEKFGFNKLTVKLWITDMIKSLTLAYAIGGPILYLFLKIFDKFPTDFLWY 197
Query: 171 --VFIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSK 228
VF+ ++ + MTI P FI PLF+K+TPL DGELK IE L+ V FPL K++V++GSK
Sbjct: 198 IMVFLFVVQILAMTIIPVFIMPLFNKFTPLEDGELKKSIESLADRVGFPLDKIFVIDGSK 257
Query: 229 RSEHSNAYFYGF-FKNKRIVLFDTLLK 254
RS HSNAYF G F +KRIVLFDTL+
Sbjct: 258 RSSHSNAYFTGLPFTSKRIVLFDTLVN 284
>pdb|3COJ|X Chain X, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|A Chain A, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|B Chain B, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|C Chain C, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|D Chain D, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|E Chain E, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|F Chain F, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|G Chain G, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
Length = 235
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 49 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSRRY 107
E TL++ F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 74 ERTLKY--FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARE- 130
Query: 108 SLDKNVF 114
S D+ +F
Sbjct: 131 SQDRKIF 137
>pdb|3PXE|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|B Chain B, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|C Chain C, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|D Chain D, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
Length = 214
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 49 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSRRY 107
E TL++ F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 53 ERTLKY--FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARE- 109
Query: 108 SLDKNVF 114
S D+ +F
Sbjct: 110 SQDRKIF 116
>pdb|2ING|X Chain X, X-Ray Structure Of The Brca1 Brct Mutant M1775k
Length = 213
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 49 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSRRY 107
E TL++ F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 52 ERTLKY--FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARE- 108
Query: 108 SLDKNVF 114
S D+ +F
Sbjct: 109 SQDRKIF 115
>pdb|1N5O|X Chain X, Structural Consequences Of A Cancer-Causing Brca1-Brct
Missense Mutation
Length = 214
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 49 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSRRY 107
E TL++ F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 53 ERTLKY--FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARE- 109
Query: 108 SLDKNVF 114
S D+ +F
Sbjct: 110 SQDRKIF 116
>pdb|3PXC|X Chain X, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1699q
Length = 214
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 49 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 105
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCEQTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 106 RYSLDKNVF 114
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|1JNX|X Chain X, Crystal Structure Of The Brct Repeat Region From The
Breast Cancer Associated Protein, Brca1
pdb|1T15|A Chain A, Crystal Structure Of The Brca1 Brct Domains In Complex
With The Phosphorylated Interacting Region From Bach1
Helicase
pdb|1T29|A Chain A, Crystal Structure Of The Brca1 Brct Repeats Bound To A
Phosphorylated Bach1 Peptide
pdb|1T2V|A Chain A, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|B Chain B, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|C Chain C, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|D Chain D, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|E Chain E, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1Y98|A Chain A, Structure Of The Brct Repeats Of Brca1 Bound To A Ctip
Phosphopeptide
Length = 214
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 49 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSRRY 107
E TL++ F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 53 ERTLKY--FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARE- 109
Query: 108 SLDKNVF 114
S D+ +F
Sbjct: 110 SQDRKIF 116
>pdb|3K0H|A Chain A, The Crystal Structure Of Brca1 Brct In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-terminus
pdb|3K0K|A Chain A, Crystal Structure Of Brca1 Brct In Complex With A Minimal
Recognition Tetrapeptide With A Free Carboxy C-Terminus
Length = 215
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 49 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSRRY 107
E TL++ F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 54 ERTLKY--FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARE- 110
Query: 108 SLDKNVF 114
S D+ +F
Sbjct: 111 SQDRKIF 117
>pdb|3PXD|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1835p
Length = 214
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 49 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 105
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 106 RYSLDKNVF 114
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|3PXB|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: T1700a
Length = 214
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 49 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 105
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERALKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 106 RYSLDKNVF 114
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|3PXA|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: G1656d
Length = 214
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 49 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSRRY 107
E TL++ F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 53 ERTLKY--FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARE- 109
Query: 108 SLDKNVF 114
S D+ +F
Sbjct: 110 SQDRKIF 116
>pdb|3K15|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K16|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With A Free Carboxy
C-Terminus
Length = 215
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 49 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSRRY 107
E TL++ F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 54 ERTLKY--FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARE- 110
Query: 108 SLDKNVF 114
S D+ +F
Sbjct: 111 SQDRKIF 117
>pdb|1T2U|A Chain A, Structural Basis Of Phosphopeptide Recognition By The Brct
Domain Of Brca1: Structure Of Brca1 Missense Variant
V1809f
Length = 214
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 49 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 105
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 106 RYSLDKNVF 114
S D+ +F
Sbjct: 109 E-SQDRKIF 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,387,658
Number of Sequences: 62578
Number of extensions: 338436
Number of successful extensions: 814
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 18
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)