BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7467
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75844|FACE1_HUMAN CAAX prenyl protease 1 homolog OS=Homo sapiens GN=ZMPSTE24 PE=1
SV=2
Length = 475
Score = 201 bits (511), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 132/179 (73%), Gaps = 9/179 (5%)
Query: 126 NTTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYP 185
T GFF+KD IK F+V+ + +P++ ++YII++GG+ F+Y W+F +++SL L+TIY
Sbjct: 157 QQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYA 216
Query: 186 EFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKR 245
++IAPLFDK+TPLP+G+LK IE ++ S+ FPL K+YVVEGSKRS HSNAYFYGFFKNKR
Sbjct: 217 DYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKR 276
Query: 246 IVLFDTLLKDYVPLNAD---------KKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295
IVLFDTLL++Y LN D + ++ G+SE + + K+GC EEVLAVL H
Sbjct: 277 IVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGH 335
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 42 WA-VNLKMEFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAES 100
WA ++ E E +IF ++ FSW V+L+E +L+ RQRR+Y TT VP ++ MD+E+
Sbjct: 4 WASLDALWEMPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSET 63
Query: 101 FEKSRRYSLDKNVFSMFKETVSNVMNT 127
FEKSR Y LDK+ FS + S T
Sbjct: 64 FEKSRLYQLDKSTFSFWSGLYSETEGT 90
>sp|Q80W54|FACE1_MOUSE CAAX prenyl protease 1 homolog OS=Mus musculus GN=Zmpste24 PE=1
SV=2
Length = 475
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/179 (54%), Positives = 132/179 (73%), Gaps = 9/179 (5%)
Query: 126 NTTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYP 185
+ T FF+KD IK FIV+ + +P++ ++YII++GG+ F+Y W+F +++SL L+TIY
Sbjct: 157 HQTLEFFMKDAIKKFIVTQCILLPVSALLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYA 216
Query: 186 EFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKR 245
++IAPLFDK+TPLP+G+LK IE ++ S+ FPL K+YVVEGSKRS HSNAYFYGFFKNKR
Sbjct: 217 DYIAPLFDKFTPLPEGKLKQEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKR 276
Query: 246 IVLFDTLLKDYVPLNADKKDKS---------GDSEPLISTEGANKKGCDTEEVLAVLAH 295
IVLFDTLL++Y N D +++S GDSE + + K+GC EEVLAVL H
Sbjct: 277 IVLFDTLLEEYSVPNKDNQEESGMEARNEGEGDSEEVKAKVKNKKQGCKNEEVLAVLGH 335
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 42 WA-VNLKMEFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAES 100
WA V+ +F E +IF ++ FSW V+L+E +L+ RQRR+Y TT VP ++ MD+++
Sbjct: 4 WASVDAMWDFPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTRVPAELEQIMDSDT 63
Query: 101 FEKSRRYSLDKNVFSMFKETVSNVMNT 127
FEKSR Y LDK+ FS + S V T
Sbjct: 64 FEKSRLYQLDKSTFSFWSGLYSEVEGT 90
>sp|Q8RX88|FACE1_ARATH CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1
PE=1 SV=1
Length = 424
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 108/139 (77%), Gaps = 7/139 (5%)
Query: 124 VMNTTYGF-------FVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILM 176
V+ + +GF F++D IK +S+IL P+ A+++I+Q GG + +YLW F+ ++
Sbjct: 133 VIESRHGFNKQTIWMFIRDMIKGTFLSVILGPPIVAAIIFIVQKGGPYLAIYLWAFMFIL 192
Query: 177 SLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAY 236
SL +MTIYP IAPLF+K+TPLPDG+L+ +IE+L++S+KFPLKKL+VV+GS RS HSNAY
Sbjct: 193 SLVMMTIYPVLIAPLFNKFTPLPDGDLREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAY 252
Query: 237 FYGFFKNKRIVLFDTLLKD 255
YGFFKNKRIVL+DTL++
Sbjct: 253 MYGFFKNKRIVLYDTLIQQ 271
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 60 IIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYSLDKNVFSMFKE 119
++GF ++++FE YL +RQ T+ P + + E FEKSR YSLDK+ F E
Sbjct: 9 VVGFMIVMYIFETYLDLRQLTALKLPTL-PKTLVGVISQEKFEKSRAYSLDKSYFHFVHE 67
Query: 120 TVSNVMNTTYGFF 132
V+ +M++ FF
Sbjct: 68 FVTILMDSAILFF 80
>sp|Q6EPN8|FACE1_ORYSJ CAAX prenyl protease 1 homolog OS=Oryza sativa subsp. japonica
GN=FACE1 PE=2 SV=1
Length = 425
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 100/128 (78%)
Query: 128 TYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEF 187
T F++D IK ++S++L P+ A++ I+Q GG + +YLW F+ +SL +MTIYP
Sbjct: 144 TIWLFIRDMIKGILLSILLGPPIVAAIIIIVQNGGPYLAIYLWGFMFALSLVMMTIYPIV 203
Query: 188 IAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKRIV 247
IAPLF+K+TPLP+G L+ +IE+L+AS+ FPLKKL+VV+GS RS HSNAY YGFFKNKRIV
Sbjct: 204 IAPLFNKFTPLPEGVLREKIEKLAASLSFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIV 263
Query: 248 LFDTLLKD 255
L+DTL++
Sbjct: 264 LYDTLIQQ 271
>sp|Q10071|STE24_SCHPO Probable CAAX prenyl protease 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC3H1.05 PE=3 SV=1
Length = 474
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 13/161 (8%)
Query: 104 SRRYSLDKNVFSMFKETVSNVMNTTYGF-------FVKDQIKSFIVSLILSIPLTGAVVY 156
SR + N++S F V+ YGF FV D +K + +L + G V
Sbjct: 168 SRLIQIPFNLYSTF------VIEEKYGFNKSTLKIFVIDLLKELSLGGLLMSVVVGVFVK 221
Query: 157 IIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKF 216
I+ G+ +Y W I+ L L TI P I PLF K+TPL +G L+++IE+L+AS+ F
Sbjct: 222 ILTKFGDNFIMYAWGAYIVFGLILQTIAPSLIMPLFYKFTPLENGSLRTQIEELAASINF 281
Query: 217 PLKKLYVVEGSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYV 257
PLKKLYV++ S+RS HSNA+FYG NK IVLFDTL+K++
Sbjct: 282 PLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKNHT 322
>sp|Q54FH7|FACE1_DICDI CAAX prenyl protease 1 homolog OS=Dictyostelium discoideum
GN=zmpste24 PE=3 SV=1
Length = 426
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 92/170 (54%), Gaps = 31/170 (18%)
Query: 128 TYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEF 187
T F+KD+I S ++ + +P+ ++II G ++ Y W+ ++ ++L +TIYP F
Sbjct: 142 TRTLFIKDKIISTLLMIGFGLPILSLAIFIINWSGPQLWFYCWLLLVAITLLSITIYPTF 201
Query: 188 IAPLFDKYTPLPDGELKSRIEQLSASVKFPLKK--LYVVEGSKRSEHSNAYFYGFFKNKR 245
I PLF+K+TP+ DGEL I L+ V FP K ++VV+ SKR H NAYFYG F KR
Sbjct: 202 IQPLFNKFTPV-DGELAESIFALAKRVGFPASKDTIFVVDNSKRDGHMNAYFYGLFGTKR 260
Query: 246 IVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295
IVL+DTL+ + D EE+LAV+ H
Sbjct: 261 IVLYDTLVNE----------------------------LDKEELLAVMGH 282
>sp|P47154|STE24_YEAST CAAX prenyl protease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STE24 PE=1 SV=1
Length = 453
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 89/139 (64%), Gaps = 8/139 (5%)
Query: 124 VMNTTYGF---FVKDQIKSFIVSLILSIPLTGAVVYI-IQVGGNMVFLYLW---VFIILM 176
V+ +GF V+ I I SL L+ + G ++Y+ +++ +LW VF+ ++
Sbjct: 146 VLEEKFGFNKLTVQLWITDMIKSLTLAYAIGGPILYLFLKIFDKFPTDFLWYIMVFLFVV 205
Query: 177 SLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAY 236
+ MTI P FI P+F+K+TPL DGELK IE L+ V FPL K++V++GSKRS HSNAY
Sbjct: 206 QILAMTIIPVFIMPMFNKFTPLEDGELKKSIESLADRVGFPLDKIFVIDGSKRSSHSNAY 265
Query: 237 FYGF-FKNKRIVLFDTLLK 254
F G F +KRIVLFDTL+
Sbjct: 266 FTGLPFTSKRIVLFDTLVN 284
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 60 IIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYSLDKNVFSMFKE 119
I GFS F FE YL+ RQ + ET + P + +D E+F KSR YS K FS+F +
Sbjct: 19 ISGFSIAQFSFESYLTYRQYQKLSETKLPP-VLEDEIDDETFHKSRNYSRAKAKFSIFGD 77
>sp|P40769|YHFN_BACSU Uncharacterized metalloprotease YhfN OS=Bacillus subtilis (strain
168) GN=yhfN PE=3 SV=2
Length = 426
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%)
Query: 123 NVMNTTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMT 182
N+ T + KDQ+ SF +S + ++I+ +LY W+ + SLFL
Sbjct: 133 NISTQTTASWAKDQVISFWISFPIFTLCVLVFYWLIKRHEKKWWLYAWLLTVPFSLFLFF 192
Query: 183 IYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFK 242
I P I PL++ + PL + EL+S+I +L+ P +Y V S+++ NAY G
Sbjct: 193 IQPVIIDPLYNDFYPLKNKELESKILELADEANIPADHVYEVNMSEKTNALNAYVTGIGA 252
Query: 243 NKRIVLFDTLLK 254
NKRIVL+DT L
Sbjct: 253 NKRIVLWDTTLN 264
>sp|Q9HCC9|LST2_HUMAN Lateral signaling target protein 2 homolog OS=Homo sapiens
GN=ZFYVE28 PE=1 SV=3
Length = 887
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 105 RRYSLDKNVFSMFKETVSNVMNTTYGFFVKDQIKSFIVSLILSIP----LTGAVVY 156
R Y + + V +F ETV ++ +G+ +D I + +L+ SIP + G VVY
Sbjct: 186 REYYVQQEVIVLFCETVERALD--FGYLTQDMIDDYEPALMFSIPRLAIVCGLVVY 239
>sp|P44919|DSBD_HAEIN Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dsbD PE=3
SV=1
Length = 579
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 130 GFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGG---NMVFLYLWVFIILMSLFLMTIYPE 186
G F I + S S PL+GA++Y+ Q G V LYL + + L L+T++
Sbjct: 300 GAFAMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAVTLYLLALGMGVPLMLITLFGN 359
Query: 187 FIAP 190
I P
Sbjct: 360 KILP 363
>sp|A5UI29|DSBD_HAEIG Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain PittGG) GN=dsbD PE=3 SV=1
Length = 579
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 130 GFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGG---NMVFLYLWVFIILMSLFLMTIYPE 186
G F I + S S PL+GA++Y+ Q G V LYL + + L L+T++
Sbjct: 300 GAFAMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAVTLYLLALGMGVPLMLITLFGN 359
Query: 187 FIAP 190
I P
Sbjct: 360 KILP 363
>sp|P24583|KPC1_YEAST Protein kinase C-like 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PKC1 PE=1 SV=3
Length = 1151
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 202 ELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNK-RIVLFDTLLKDYVPLN 260
E K ++E+ L KLY ++G +RS S+A G ++K RI + + LK Y +N
Sbjct: 124 EFKLQVEKQYQEANTKLTKLYQIDGDQRS--SSAAEGGAMESKYRIQMLNKALKKYQAIN 181
Query: 261 AD 262
D
Sbjct: 182 VD 183
>sp|Q9CP40|DSBD_PASMU Thiol:disulfide interchange protein DsbD OS=Pasteurella multocida
(strain Pm70) GN=dsbD PE=3 SV=1
Length = 576
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 130 GFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGG---NMVFLYLWVFIILMSLFLMTIYPE 186
G FV I + S S PL+GA++Y+ Q G + LYL + + L +T++
Sbjct: 300 GVFVMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAITLYLLALGMGLPLIFITVFGN 359
Query: 187 FIAP 190
I P
Sbjct: 360 NILP 363
>sp|Q4QM23|DSBD_HAEI8 Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain 86-028NP) GN=dsbD PE=3 SV=1
Length = 579
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 130 GFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGG---NMVFLYLWVFIILMSLFLMTIYPE 186
G F I + S S PL+GA++Y+ Q G LYL + + L L+T++
Sbjct: 300 GAFAMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAATLYLLALGMGVPLMLITLFGN 359
Query: 187 FIAP 190
I P
Sbjct: 360 KILP 363
>sp|A5UDI9|DSBD_HAEIE Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain PittEE) GN=dsbD PE=3 SV=1
Length = 579
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 130 GFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGG---NMVFLYLWVFIILMSLFLMTIYPE 186
G F I + S S PL+GA++Y+ Q G LYL + + L L+T++
Sbjct: 300 GAFAMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAATLYLLALGMGVPLMLITLFGN 359
Query: 187 FIAP 190
I P
Sbjct: 360 KILP 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,322,967
Number of Sequences: 539616
Number of extensions: 4287496
Number of successful extensions: 12780
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 12748
Number of HSP's gapped (non-prelim): 41
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)