Query psy7467
Match_columns 295
No_of_seqs 193 out of 874
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:04:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2719|consensus 100.0 3.1E-51 6.8E-56 398.1 25.2 219 52-295 4-286 (428)
2 PRK03001 M48 family peptidase; 99.9 3.5E-24 7.6E-29 200.5 14.0 126 134-295 1-130 (283)
3 PRK03982 heat shock protein Ht 99.9 1.1E-22 2.5E-27 190.7 13.7 127 133-295 1-131 (288)
4 PRK01265 heat shock protein Ht 99.8 2.1E-19 4.6E-24 171.9 15.0 94 170-295 48-146 (324)
5 PRK01345 heat shock protein Ht 99.7 1.8E-17 3.8E-22 158.2 13.8 125 136-295 3-130 (317)
6 PRK04897 heat shock protein Ht 99.7 1E-16 2.2E-21 151.6 15.1 130 133-295 7-143 (298)
7 PRK02391 heat shock protein Ht 99.7 9.7E-17 2.1E-21 151.8 14.5 98 166-295 39-139 (296)
8 PRK03072 heat shock protein Ht 99.7 9.4E-17 2E-21 151.2 13.8 126 134-295 5-133 (288)
9 PRK02870 heat shock protein Ht 99.7 2.2E-16 4.8E-21 151.8 14.7 131 133-295 18-179 (336)
10 PRK05457 heat shock protein Ht 99.6 2.8E-14 6.1E-19 134.3 14.8 93 170-295 41-140 (284)
11 PF01435 Peptidase_M48: Peptid 99.5 4.1E-15 8.9E-20 131.7 1.5 91 173-295 3-95 (226)
12 COG0501 HtpX Zn-dependent prot 99.1 4.8E-09 1E-13 97.3 15.1 96 168-295 58-163 (302)
13 PF05569 Peptidase_M56: BlaR1 96.8 0.0053 1.1E-07 57.7 8.6 71 191-295 131-202 (299)
14 COG4783 Putative Zn-dependent 95.0 0.051 1.1E-06 55.0 6.5 84 177-295 45-136 (484)
15 KOG2661|consensus 83.6 0.9 2E-05 44.7 2.9 40 221-295 241-281 (424)
16 COG4219 MecR1 Antirepressor re 80.5 9.1 0.0002 37.5 8.4 62 200-295 135-196 (337)
17 TIGR00782 ccoP cytochrome c ox 72.8 5.5 0.00012 37.6 4.6 48 162-211 26-78 (285)
18 smart00793 AgrB Accessory gene 67.8 56 0.0012 28.9 9.6 24 188-211 118-141 (184)
19 PRK05320 rhodanese superfamily 63.1 8.8 0.00019 35.9 3.8 56 191-254 7-63 (257)
20 PF15061 DUF4538: Domain of un 59.2 13 0.00028 27.6 3.2 46 168-221 7-52 (58)
21 PF14715 FixP_N: N-terminal do 58.3 14 0.00029 26.6 3.2 26 162-187 20-45 (51)
22 PRK01415 hypothetical protein; 58.0 12 0.00025 35.2 3.6 45 190-240 8-53 (247)
23 COG1054 Predicted sulfurtransf 52.3 15 0.00033 35.6 3.4 45 190-240 8-53 (308)
24 PRK04351 hypothetical protein; 51.7 31 0.00068 29.9 5.0 66 198-295 1-67 (149)
25 PRK12768 CysZ-like protein; Re 51.5 1E+02 0.0023 28.7 8.8 25 136-160 21-45 (240)
26 PF15048 OSTbeta: Organic solu 50.7 22 0.00049 30.2 3.8 71 47-120 26-96 (125)
27 smart00361 RRM_1 RNA recogniti 50.1 33 0.00072 25.0 4.3 38 199-237 1-42 (70)
28 PF10777 YlaC: Inner membrane 49.3 1.4E+02 0.0031 26.2 8.6 25 201-225 126-151 (155)
29 PF11694 DUF3290: Protein of u 47.7 1.9E+02 0.0041 25.1 9.9 25 201-225 79-103 (149)
30 PRK08156 type III secretion sy 45.6 3.2E+02 0.0069 27.2 11.6 29 125-153 126-155 (361)
31 PRK13109 flhB flagellar biosyn 44.1 3.3E+02 0.0072 26.9 14.0 41 113-154 129-170 (358)
32 PRK10699 phosphatidylglyceroph 43.8 1.4E+02 0.0031 27.9 8.5 40 157-197 66-105 (244)
33 PRK10582 cytochrome o ubiquino 41.8 1.5E+02 0.0033 24.4 7.4 23 162-184 42-64 (109)
34 COG3402 Uncharacterized conser 41.6 91 0.002 27.7 6.3 43 144-186 27-70 (161)
35 PF04647 AgrB: Accessory gene 41.1 1.4E+02 0.0029 25.9 7.5 22 187-208 117-138 (185)
36 PF15061 DUF4538: Domain of un 41.0 22 0.00047 26.4 2.0 24 89-112 24-47 (58)
37 TIGR01404 FlhB_rel_III type II 40.7 3.6E+02 0.0078 26.4 11.8 28 125-152 130-158 (342)
38 PF01863 DUF45: Protein of unk 40.5 35 0.00075 29.8 3.7 46 201-254 112-158 (205)
39 COG4512 AgrB Membrane protein 39.5 89 0.0019 28.4 6.0 76 127-212 72-147 (198)
40 PF07114 DUF1370: Protein of u 39.3 60 0.0013 29.4 5.0 38 50-89 147-184 (187)
41 PRK12468 flhB flagellar biosyn 39.1 4.1E+02 0.0089 26.6 11.6 27 125-151 138-165 (386)
42 PF06170 DUF983: Protein of un 39.1 1.6E+02 0.0034 23.3 6.8 46 140-185 29-74 (86)
43 PF13699 DUF4157: Domain of un 39.0 69 0.0015 24.7 4.7 44 197-248 1-49 (79)
44 PRK01100 putative accessory ge 38.4 1.5E+02 0.0033 26.8 7.6 23 188-210 130-152 (210)
45 TIGR03782 Bac_Flav_CT_J Bacter 38.2 3.9E+02 0.0083 26.3 10.5 10 94-103 124-133 (322)
46 PF03820 Mtc: Tricarboxylate c 37.9 82 0.0018 30.6 6.0 57 166-223 248-304 (308)
47 PF10011 DUF2254: Predicted me 37.8 2.7E+02 0.0058 27.4 9.7 90 125-214 80-177 (371)
48 COG3125 CyoD Heme/copper-type 37.5 1.9E+02 0.0042 24.1 7.3 48 137-184 17-66 (111)
49 TIGR03513 GldL_gliding gliding 37.4 1.2E+02 0.0026 27.9 6.6 45 139-183 5-49 (202)
50 PF11391 DUF2798: Protein of u 36.2 1.5E+02 0.0034 21.4 6.0 13 167-179 31-43 (60)
51 COG1451 Predicted metal-depend 36.1 41 0.00089 31.0 3.5 59 201-295 123-181 (223)
52 PF10026 DUF2268: Predicted Zn 35.8 73 0.0016 28.3 5.0 65 202-295 4-71 (195)
53 TIGR02901 QoxD cytochrome aa3 35.6 1.9E+02 0.0041 23.3 6.8 51 132-184 5-55 (94)
54 TIGR02847 CyoD cytochrome o ub 35.5 2.4E+02 0.0051 22.8 7.4 47 134-184 5-53 (96)
55 COG1377 FlhB Flagellar biosynt 35.5 4.7E+02 0.01 26.2 19.8 101 125-225 138-269 (363)
56 PRK05702 flhB flagellar biosyn 35.3 4.5E+02 0.0098 26.0 14.5 42 113-155 127-169 (359)
57 COG4784 Putative Zn-dependent 33.6 69 0.0015 32.1 4.7 42 220-295 89-130 (479)
58 PF12725 DUF3810: Protein of u 32.9 2E+02 0.0042 27.9 7.8 35 181-215 74-112 (318)
59 TIGR02976 phageshock_pspB phag 32.9 2.2E+02 0.0048 22.0 6.6 42 61-112 11-52 (75)
60 COG2274 SunT ABC-type bacterio 32.6 6.7E+02 0.015 27.1 15.3 21 59-79 195-215 (709)
61 PF12651 RHH_3: Ribbon-helix-h 32.5 19 0.00042 24.7 0.6 22 200-221 10-31 (44)
62 PF06105 Aph-1: Aph-1 protein; 31.9 1.9E+02 0.004 27.2 7.2 14 229-242 102-115 (238)
63 PRK00142 putative rhodanese-re 31.8 52 0.0011 31.7 3.6 45 190-240 7-52 (314)
64 PF06570 DUF1129: Protein of u 31.1 3.6E+02 0.0079 24.0 8.7 44 136-179 112-160 (206)
65 cd03390 PAP2_containing_1_like 30.8 3.1E+02 0.0068 23.9 8.2 53 146-198 23-75 (193)
66 PF15179 Myc_target_1: Myc tar 30.7 82 0.0018 28.7 4.4 31 128-158 12-43 (197)
67 PF13239 2TM: 2TM domain 30.4 2.4E+02 0.0052 21.4 6.5 12 169-180 49-60 (83)
68 PRK12721 secretion system appa 30.4 5.4E+02 0.012 25.3 14.0 41 113-154 120-161 (349)
69 TIGR00328 flhB flagellar biosy 29.4 5.6E+02 0.012 25.2 14.4 41 113-154 120-161 (347)
70 PF06645 SPC12: Microsomal sig 29.3 1.2E+02 0.0025 23.4 4.5 24 169-194 38-61 (76)
71 PF14026 DUF4242: Protein of u 28.4 54 0.0012 25.1 2.5 22 202-223 55-76 (77)
72 PF01956 DUF106: Integral memb 27.5 1.3E+02 0.0028 25.9 5.0 26 133-158 86-111 (168)
73 PF06923 GutM: Glucitol operon 26.7 1E+02 0.0022 25.3 4.0 27 59-85 3-29 (109)
74 PF07332 DUF1469: Protein of u 26.7 3.3E+02 0.0072 21.7 8.3 9 202-210 110-118 (121)
75 TIGR03750 conj_TIGR03750 conju 26.2 3.8E+02 0.0083 22.3 12.0 78 128-217 19-96 (111)
76 PF10777 YlaC: Inner membrane 26.0 2.1E+02 0.0047 25.2 6.0 16 163-178 57-73 (155)
77 PF00356 LacI: Bacterial regul 25.9 77 0.0017 22.0 2.7 33 185-218 13-45 (46)
78 PF13346 ABC2_membrane_5: ABC- 25.8 4.1E+02 0.0088 22.4 8.0 7 97-103 74-80 (206)
79 PHA02902 putative IMV membrane 25.7 1.5E+02 0.0032 22.7 4.2 43 60-102 8-60 (70)
80 PRK06298 type III secretion sy 25.4 6.7E+02 0.014 24.8 15.6 40 113-153 121-161 (356)
81 PRK14583 hmsR N-glycosyltransf 24.6 2.2E+02 0.0048 28.2 6.7 28 199-227 86-113 (444)
82 TIGR03793 TOMM_pelo TOMM prope 24.1 3.3E+02 0.0071 21.1 6.2 28 199-226 15-49 (77)
83 PF15656 Tox-HDC: Toxin with a 24.1 1.2E+02 0.0027 25.5 4.1 47 192-238 3-49 (119)
84 PF09788 Tmemb_55A: Transmembr 24.0 2.7E+02 0.0058 26.6 6.7 36 145-180 210-245 (256)
85 PF09049 SNN_transmemb: Stanni 23.5 14 0.0003 24.0 -1.3 7 21-27 27-33 (33)
86 PF09851 SHOCT: Short C-termin 23.4 71 0.0015 20.3 2.0 14 93-106 14-27 (31)
87 PF04657 DUF606: Protein of un 22.9 3.6E+02 0.0079 22.7 6.8 62 125-186 19-87 (138)
88 PF14007 YtpI: YtpI-like prote 22.7 2.2E+02 0.0047 22.8 5.0 41 42-84 46-86 (89)
89 PRK09108 type III secretion sy 22.6 7.5E+02 0.016 24.4 14.5 41 113-154 122-163 (353)
90 PRK05423 hypothetical protein; 22.5 12 0.00027 30.5 -2.1 30 242-295 38-67 (104)
91 PF14147 Spore_YhaL: Sporulati 21.8 97 0.0021 22.5 2.6 18 164-181 2-19 (52)
92 PRK12772 bifunctional flagella 21.7 7.7E+02 0.017 26.1 10.3 28 125-152 394-422 (609)
93 PF10710 DUF2512: Protein of u 21.6 3E+02 0.0065 23.5 6.1 23 170-192 34-56 (136)
94 PF06667 PspB: Phage shock pro 21.4 3.9E+02 0.0085 20.7 6.4 25 55-79 5-29 (75)
95 PF09753 Use1: Membrane fusion 20.6 1E+02 0.0022 28.5 3.2 19 165-183 228-246 (251)
No 1
>KOG2719|consensus
Probab=100.00 E-value=3.1e-51 Score=398.06 Aligned_cols=219 Identities=48% Similarity=0.829 Sum_probs=209.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhccCCCHHHHHHHHHHhHhhhhHHhHHHHHHHH-------
Q psy7467 52 LEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYSLDKNVFSMFKETVSNV------- 124 (295)
Q Consensus 52 ~p~~~~~~il~~~~~~~l~e~yL~~RQ~r~~~~~~~vP~~l~~~~s~e~f~Ks~~Y~~~k~~f~~~~~l~~~i------- 124 (295)
|...++.++++++++.+.||+||..||+++++++..+|+++++++|+|+|+|||.|++||..|++++..++.+
T Consensus 4 ~~~~~~~~i~~f~i~~~~~~~yl~~Rq~~~~~~~~~~p~el~~~~~~et~~kar~y~~~k~~f~i~~~~~~~~~~~l~~L 83 (428)
T KOG2719|consen 4 DAMCRKSIILFFSIFLYLFETYLTERQLKVLKRTKLVPKELGGIIDQETFKKARSYERDKSIFSIFNLLLSLVLLLLLEL 83 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHhhcCCCHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3366788999999999999999999999999998889999999999999999999999999999999999983
Q ss_pred --------------------------------------------------------hc-CChHHHHHHHHHHHHHHHHHH
Q psy7467 125 --------------------------------------------------------MN-TTYGFFVKDQIKSFIVSLILS 147 (295)
Q Consensus 125 --------------------------------------------------------FN-~T~~~fl~D~lK~~lL~~vl~ 147 (295)
|| +|.+.|++|.+|+.+++++++
T Consensus 84 ~~g~~~~lw~lt~~~~~~~~~~~~s~vF~~~~s~~~~l~~LP~~iys~fvie~~~gfnk~t~~~~~~d~lk~~~v~~~l~ 163 (428)
T KOG2719|consen 84 YLGALPFLWKLTGKFLGKAGEIWLSLVFLLLLSIYSTLLDLPSSIYSTFVLEEKHGFNKQTLSLFIIDGLKSLLVGVVLT 163 (428)
T ss_pred HHhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHhhcCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 88 899999999999999999999
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccCCCchHHHHHHHHHHhCCCCCCcEEEEeCC
Q psy7467 148 IPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGS 227 (295)
Q Consensus 148 ~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPLedgeLr~~Ie~La~r~GFp~~~I~V~d~S 227 (295)
.|+++++.+++..+|++|.+|+|++.++++++++++||.+|+|+|+|++|||+|+||++||+||++.|||.++++|+|||
T Consensus 164 ~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l~ti~p~~i~P~f~K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi~~s 243 (428)
T KOG2719|consen 164 IPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLLLTIYPGFIAPLFGKFTPLEEGDLKEKIERLADSVGFPLSKYRVIDGS 243 (428)
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCchHHHHHHHHHhcCCCceEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEecCCCCcEEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 228 KRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 228 krS~hsNAyf~G~g~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
|||+||||||+|+|++|||||||||+.+ ++ -|++||++||+||
T Consensus 244 ~rs~hsNAyfyG~~~~KRIvIyDtLl~~----------------------~~---~~~~eel~AVl~H 286 (428)
T KOG2719|consen 244 KRSSHSNAYFYGLCKNKRIVIYDTLLLE----------------------EE---HLNNEELVAVLAH 286 (428)
T ss_pred CCCCCCCeeeeeccccceEEEehhhhhh----------------------hh---ccccHHHHHHHHH
Confidence 9999999999999999999999999951 00 0789999999999
No 2
>PRK03001 M48 family peptidase; Provisional
Probab=99.91 E-value=3.5e-24 Score=200.47 Aligned_cols=126 Identities=15% Similarity=0.280 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccCCCc---hHHHHHHHH
Q psy7467 134 KDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPLPDG---ELKSRIEQL 210 (295)
Q Consensus 134 ~D~lK~~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPLedg---eLr~~Ie~L 210 (295)
+|.+|++++..+++++++.+.+++. |.++|+|+|++.+++++++++++|.+|.|+||+ +|++++ +|++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~l 76 (283)
T PRK03001 1 FNWVKTAMLMAAITALFIVIGGMIG---GSQGMLIALLFALGMNFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVREL 76 (283)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHH
Confidence 3789999999999999999988876 667799999999999999999999999999998 889874 899999999
Q ss_pred HHhCCCCCCcEEEEeCCCCCCCccEEEecCCCCc-EEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhh
Q psy7467 211 SASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNK-RIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEV 289 (295)
Q Consensus 211 a~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~K-rIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EI 289 (295)
|+++|+|.++||++|+ +++|||++|.+++| +||++|+|++. +++||+
T Consensus 77 a~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~Ivvt~gLl~~----------------------------l~~~El 124 (283)
T PRK03001 77 AQRAGLPMPKVYLINE----DQPNAFATGRNPEHAAVAATTGILRV----------------------------LSEREI 124 (283)
T ss_pred HHHcCCCCCeEEEecC----CCcceEEecCCCCCeEEEecHHHHhh----------------------------CCHHHH
Confidence 9999999999999995 68999999998765 79999999998 999999
Q ss_pred hhcccC
Q psy7467 290 LAVLAH 295 (295)
Q Consensus 290 lAVLAH 295 (295)
.|||||
T Consensus 125 ~aVlAH 130 (283)
T PRK03001 125 RGVMAH 130 (283)
T ss_pred HHHHHH
Confidence 999999
No 3
>PRK03982 heat shock protein HtpX; Provisional
Probab=99.89 E-value=1.1e-22 Score=190.71 Aligned_cols=127 Identities=19% Similarity=0.245 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccCC---CchHHHHHHH
Q psy7467 133 VKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPLP---DGELKSRIEQ 209 (295)
Q Consensus 133 l~D~lK~~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPLe---dgeLr~~Ie~ 209 (295)
++|.+|++++.++++++++++++.+ .|..||+++|++.+++.++ .+++|..|+|++++++|++ +++|++.+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~p~L~~~v~~ 76 (288)
T PRK03982 1 MMNQLKTGLLMALLTGLLYAIGYLL---GGSIGPIIAILLALIPNLI-SYYYSDKIVLASYNARIVSEEEAPELYRIVER 76 (288)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHH-HHHHhHHHHHHhcCCEECChhhhHHHHHHHHH
Confidence 3688999999998888888777633 4788999999998888877 8899999999999999994 4569999999
Q ss_pred HHHhCCCCCCcEEEEeCCCCCCCccEEEecCCCCc-EEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhh
Q psy7467 210 LSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNK-RIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEE 288 (295)
Q Consensus 210 La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~K-rIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~E 288 (295)
+|+++|+|.++||++|+ +++|||++|+++++ .|+++|+|++. +++||
T Consensus 77 la~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~V~vt~gLl~~----------------------------l~~~E 124 (288)
T PRK03982 77 LAERANIPKPKVAIVPT----QTPNAFATGRDPKHAVVAVTEGILNL----------------------------LNEDE 124 (288)
T ss_pred HHHHcCCCCCeEEEEeC----CCcceEEeccCCCCeEEEeehHHHhh----------------------------CCHHH
Confidence 99999999999999994 57999999998755 56699999998 99999
Q ss_pred hhhcccC
Q psy7467 289 VLAVLAH 295 (295)
Q Consensus 289 IlAVLAH 295 (295)
+.|||||
T Consensus 125 l~AVlAH 131 (288)
T PRK03982 125 LEGVIAH 131 (288)
T ss_pred HHHHHHH
Confidence 9999999
No 4
>PRK01265 heat shock protein HtpX; Provisional
Probab=99.82 E-value=2.1e-19 Score=171.85 Aligned_cols=94 Identities=26% Similarity=0.394 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhC--CCccCC--CchHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecCC-CCc
Q psy7467 170 WVFIILMSLFLMTIYPEFIAPLFD--KYTPLP--DGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFF-KNK 244 (295)
Q Consensus 170 w~~~~~~~l~l~~iyP~lI~PLFn--kftPLe--dgeLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g-~~K 244 (295)
.++.+++.++.++++|.++.|+|| +++|.+ +++|++.++++|+++|+|.++||++|++ ++|||++|.+ ++|
T Consensus 48 ~~~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~----~~NAfa~G~~~~~~ 123 (324)
T PRK01265 48 LIFVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVP----FPNAFAYGSPIAGK 123 (324)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCC----CCCeEEeccCCCCC
Confidence 455677788889999999999997 899998 7899999999999999999999999964 5999999996 579
Q ss_pred EEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 245 RIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 245 rIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
|||++|+|++. +++||+.||+||
T Consensus 124 ~Ivvt~gLl~~----------------------------l~~~El~aVlAH 146 (324)
T PRK01265 124 RIAITLPLLKI----------------------------LNRDEIKAVAGH 146 (324)
T ss_pred EEEEehHHHhh----------------------------CCHHHHHHHHHH
Confidence 99999999998 999999999999
No 5
>PRK01345 heat shock protein HtpX; Provisional
Probab=99.74 E-value=1.8e-17 Score=158.20 Aligned_cols=125 Identities=20% Similarity=0.270 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCC--CccCCCchHHHHHHHHHHh
Q psy7467 136 QIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDK--YTPLPDGELKSRIEQLSAS 213 (295)
Q Consensus 136 ~lK~~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnk--ftPLedgeLr~~Ie~La~r 213 (295)
.++.+++..++.+.++.+.+.+- |....+.+.++.+++.++..+..|.++.|.++. .+|.++++|++.+++||++
T Consensus 3 ~~~t~~~~~~~~~~~~~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~ 79 (317)
T PRK01345 3 YFRTAMLLAGMTALFMGVGYLIG---GAGGMMIALVIAAGMNLFSYWNSDKMVLRMYGAQEVDERSAPELYRMVRDLARR 79 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCCeECCcccCHHHHHHHHHHHHH
Confidence 45555555555544444433332 333345556777888889999999999999985 7788889999999999999
Q ss_pred CCCCCCcEEEEeCCCCCCCccEEEecCCC-CcEEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhc
Q psy7467 214 VKFPLKKLYVVEGSKRSEHSNAYFYGFFK-NKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAV 292 (295)
Q Consensus 214 ~GFp~~~I~V~d~SkrS~hsNAyf~G~g~-~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAV 292 (295)
+|+|.++||++| +.++|||++|.++ +++|+++|+|++. +++|||.||
T Consensus 80 agi~~p~v~vid----~~~~NAFa~G~~~~~~~V~vt~gLL~~----------------------------L~~dEL~aV 127 (317)
T PRK01345 80 AGLPMPKVYIID----NPQPNAFATGRNPENAAVAATTGLLQR----------------------------LSPEEVAGV 127 (317)
T ss_pred cCCCCCcEEEEc----CCCcceEEecCCCCCeEEEechHHHhh----------------------------CCHHHHHHH
Confidence 999999999999 4789999999975 5689999999998 999999999
Q ss_pred ccC
Q psy7467 293 LAH 295 (295)
Q Consensus 293 LAH 295 (295)
|||
T Consensus 128 lAH 130 (317)
T PRK01345 128 MAH 130 (317)
T ss_pred HHH
Confidence 999
No 6
>PRK04897 heat shock protein HtpX; Provisional
Probab=99.72 E-value=1e-16 Score=151.60 Aligned_cols=130 Identities=14% Similarity=0.238 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccC---CCchHHHH
Q psy7467 133 VKDQIKSFIVSLILSIPLTGAVVYIIQV---GGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPL---PDGELKSR 206 (295)
Q Consensus 133 l~D~lK~~lL~~vl~~pl~~~~~~ii~~---~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPL---edgeLr~~ 206 (295)
..+.+|+.++..++.+.+..+.+.+-.. .+....+++.++.+++.++ .+.++..+...+++++|+ ++++|++.
T Consensus 7 ~~n~~~t~~ll~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~v~~~~~p~L~~~ 85 (298)
T PRK04897 7 ASNKRKTVFLLVVFFLLLALVGAAVGYLFLNSGLGGLIIALIIGVIYALI-MIFQSTNVVMSMNHAREVTEEEAPELWHI 85 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH-HHHhhHHHHHHhCCCEECChhhhHHHHHH
Confidence 3466777777666655555544322110 0122334444444555444 455555666688889999 45789999
Q ss_pred HHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecCCCCcE-EEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCC
Q psy7467 207 IEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKR-IVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCD 285 (295)
Q Consensus 207 Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~Kr-IVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 285 (295)
|+++|+++|+|.++||++|+ .++|||++|++++|+ |+++|+|++. ++
T Consensus 86 v~~la~~~gip~p~v~v~~~----~~~NAfa~G~~~~~~~v~vt~gLl~~----------------------------l~ 133 (298)
T PRK04897 86 VEDMAMVAQIPMPRVFIIDD----PSPNAFATGSSPKNAAVAVTTGLLAI----------------------------MN 133 (298)
T ss_pred HHHHHHHcCCCCCcEEEecC----CCCceEEeccCCCCcEEEeehHHHhh----------------------------CC
Confidence 99999999999999999994 579999999987665 7788899998 99
Q ss_pred hhhhhhcccC
Q psy7467 286 TEEVLAVLAH 295 (295)
Q Consensus 286 ~~EIlAVLAH 295 (295)
+||+.||+||
T Consensus 134 ~~El~aVlAH 143 (298)
T PRK04897 134 REELEGVIGH 143 (298)
T ss_pred HHHHHHHHHH
Confidence 9999999999
No 7
>PRK02391 heat shock protein HtpX; Provisional
Probab=99.72 E-value=9.7e-17 Score=151.80 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhC--CCccCCCchHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecCCCC
Q psy7467 166 FLYLWVFIILMSLFLMTIYPEFIAPLFD--KYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKN 243 (295)
Q Consensus 166 wl~~w~~~~~~~l~l~~iyP~lI~PLFn--kftPLedgeLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~ 243 (295)
++++.++.+++.++..+..|.++....+ +.+|.++++|++.++++|++.|+|.++||++| ++++|||++|++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~----~~~~NAfa~G~~~~ 114 (296)
T PRK02391 39 LVLIVVIAGGFLLAQYFFSDKLALWSMGARIVSEDEYPELHAMVERLCALADLPKPRVAVAD----SDVPNAFATGRSPK 114 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEe----CCCCceEEecCCCC
Confidence 4445566677777777778887776654 67778889999999999999999999999999 57999999999866
Q ss_pred cE-EEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 244 KR-IVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 244 Kr-IVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
++ |+++|+|++. +++||+.||+||
T Consensus 115 ~~~V~vt~gLl~~----------------------------L~~~El~aVlaH 139 (296)
T PRK02391 115 NAVVCVTTGLMRR----------------------------LDPDELEAVLAH 139 (296)
T ss_pred CcEEEecHHHHhh----------------------------CCHHHHHHHHHH
Confidence 55 6678999998 999999999999
No 8
>PRK03072 heat shock protein HtpX; Provisional
Probab=99.71 E-value=9.4e-17 Score=151.20 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhC--CCccCCCchHHHHHHHHH
Q psy7467 134 KDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFD--KYTPLPDGELKSRIEQLS 211 (295)
Q Consensus 134 ~D~lK~~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFn--kftPLedgeLr~~Ie~La 211 (295)
.+.++++++..++.+.++.+.+.+ |....+++.++.+++.++..+..|..+....+ .-+|.++++|++.++++|
T Consensus 5 ~~~~~t~~l~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la 80 (288)
T PRK03072 5 ANGLKTALLLGGMSALIVFIGALF----GRTGLGIAVLIAVGMNAYVYWNSDKLALRAMHAQPVSEVQAPAMYRIVRELS 80 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCEECChhhhHHHHHHHHHHH
Confidence 356777777776666666555444 44555666677777777777777877776664 345667789999999999
Q ss_pred HhCCCCCCcEEEEeCCCCCCCccEEEecCCCC-cEEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhh
Q psy7467 212 ASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKN-KRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVL 290 (295)
Q Consensus 212 ~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~-KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIl 290 (295)
+++|+|.++||++| ++++|||++|..+. ..|+++|+|++. +++||+.
T Consensus 81 ~~~g~p~p~vyv~~----~~~~NAFa~G~~~~~~~v~vt~gLl~~----------------------------l~~~El~ 128 (288)
T PRK03072 81 TAARQPMPRLYISP----TAAPNAFATGRNPRNAAVCCTEGILQI----------------------------LNERELR 128 (288)
T ss_pred HHcCCCCCCEEEec----CCCCceEEecCCCCCcEEEecHHHHHh----------------------------CCHHHHH
Confidence 99999999999999 45799999997543 458899999998 9999999
Q ss_pred hcccC
Q psy7467 291 AVLAH 295 (295)
Q Consensus 291 AVLAH 295 (295)
||+||
T Consensus 129 aVlAH 133 (288)
T PRK03072 129 GVLGH 133 (288)
T ss_pred HHHHH
Confidence 99999
No 9
>PRK02870 heat shock protein HtpX; Provisional
Probab=99.70 E-value=2.2e-16 Score=151.85 Aligned_cols=131 Identities=16% Similarity=0.240 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------------hhHHHHHHHHHHHHHHHHHHHhhhhHhh
Q psy7467 133 VKDQIKSFIVSLILSIPLTGAVVYIIQVGG----------------------NMVFLYLWVFIILMSLFLMTIYPEFIAP 190 (295)
Q Consensus 133 l~D~lK~~lL~~vl~~pl~~~~~~ii~~~G----------------------~~~wl~~w~~~~~~~l~l~~iyP~lI~P 190 (295)
-++.+|+.++..++.+.++.+.+.+-...| +..-+++.++.+++.++..+..+.++..
T Consensus 18 ~~n~~kt~~l~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~ 97 (336)
T PRK02870 18 RRNRLKTRAVIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILVTFQNFDKIMLS 97 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 346788888887777777666655532222 2333444455566666666666665554
Q ss_pred hh-------CCCccCCCchHHHHHHHHHHhCCCC-CCcEEEEeCCCCCCCccEEEecCCC-CcEEEEehhhhhhhcCCCc
Q psy7467 191 LF-------DKYTPLPDGELKSRIEQLSASVKFP-LKKLYVVEGSKRSEHSNAYFYGFFK-NKRIVLFDTLLKDYVPLNA 261 (295)
Q Consensus 191 LF-------nkftPLedgeLr~~Ie~La~r~GFp-~~~I~V~d~SkrS~hsNAyf~G~g~-~KrIVL~DTLL~~~~~~~~ 261 (295)
.. +++.|+++++|++.++++|+++|+| .++||++|+ +++|||++|+++ +++|+++|+|++.
T Consensus 98 ~~~a~~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~----~~~NAFA~G~~~~~~~Ivvt~GLL~~------ 167 (336)
T PRK02870 98 GTEYKEITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDA----PYMNAFASGYSEKSAMVAITTGLLEK------ 167 (336)
T ss_pred HcCCEEcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcC----CCCceEEecCCCCCcEEEEehHHhhh------
Confidence 43 3566777789999999999999999 899999995 579999999975 7999999999998
Q ss_pred ccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 262 DKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
+++||+.||+||
T Consensus 168 ----------------------L~~dEL~aVlAH 179 (336)
T PRK02870 168 ----------------------LDRDELQAVMAH 179 (336)
T ss_pred ----------------------CCHHHHHHHHHH
Confidence 999999999999
No 10
>PRK05457 heat shock protein HtpX; Provisional
Probab=99.58 E-value=2.8e-14 Score=134.32 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhCCCccC----CCch--HHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecCCCC
Q psy7467 170 WVFIILMSLFLMTIYPEFIAPLFDKYTPL----PDGE--LKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKN 243 (295)
Q Consensus 170 w~~~~~~~l~l~~iyP~lI~PLFnkftPL----edge--Lr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~ 243 (295)
.++.++..++..++.|.++...++ .+|+ ++++ |++.++++|+++|+|.+++|++| +.++|||++|.+++
T Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~-a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~----~~~~NAfa~G~~~~ 115 (284)
T PRK05457 41 AVFGFGGSFISLLMSKWMAKRSTG-AEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYH----SPEINAFATGASKN 115 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEe----CCCceEEEecCCCC
Confidence 344555566666777776665554 5555 2333 99999999999999999999999 47899999999887
Q ss_pred cEEE-EehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 244 KRIV-LFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 244 KrIV-L~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
|++| +++.|++. +++||+.||+||
T Consensus 116 ~~~V~vt~gLl~~----------------------------L~~~El~aVlAH 140 (284)
T PRK05457 116 NSLVAVSTGLLQN----------------------------MSRDEVEAVLAH 140 (284)
T ss_pred CeEEEeehHHhhh----------------------------CCHHHHHHHHHH
Confidence 7755 55559998 999999999999
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.50 E-value=4.1e-15 Score=131.69 Aligned_cols=91 Identities=41% Similarity=0.653 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhhhHhhhhCCCccCCCchHHHHHHHHHHhC--CCCCCcEEEEeCCCCCCCccEEEecCCCCcEEEEeh
Q psy7467 173 IILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASV--KFPLKKLYVVEGSKRSEHSNAYFYGFFKNKRIVLFD 250 (295)
Q Consensus 173 ~~~~~l~l~~iyP~lI~PLFnkftPLedgeLr~~Ie~La~r~--GFp~~~I~V~d~SkrS~hsNAyf~G~g~~KrIVL~D 250 (295)
.+++..++..++|.+++|++++++|.++++|++.++++++++ |+|.++||++|.+. .|||++|.++.|+|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~~~----~NA~~~g~~~~~~I~v~~ 78 (226)
T PF01435_consen 3 MLVVSLLLAFIGPPLIAPLFNKFTPLEDPELRRIVEELARRAGLGIPPPRVYVIDSPS----PNAFATGGGPRKRIVVTS 78 (226)
T ss_dssp --TTTSTTGHHCCCCHCCHCTC--B-HHHHHHHHHHHHHHHHHCTSS--EEEEE--SS----EEEEEETTTC--EEEEEH
T ss_pred eeeHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcCCC----CcEEEEccCCCcEEEEeC
Confidence 344556667889999999999999999999999999999999 99999999999543 999999999999999999
Q ss_pred hhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 251 TLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 251 TLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
+|++. ++++|+.|||||
T Consensus 79 ~ll~~----------------------------~~~~el~aVlaH 95 (226)
T PF01435_consen 79 GLLES----------------------------LSEDELAAVLAH 95 (226)
T ss_dssp HHHHH----------------------------SSHHHHHHHHHH
T ss_pred hhhhc----------------------------ccHHHHHHHHHH
Confidence 99987 899999999999
No 12
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.8e-09 Score=97.30 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhCC--CccCC------CchHHHHHHHHHHhCCCC-CCcEEEEeCCCCCCCccEEEe
Q psy7467 168 YLWVFIILMSLFLMTIYPEFIAPLFDK--YTPLP------DGELKSRIEQLSASVKFP-LKKLYVVEGSKRSEHSNAYFY 238 (295)
Q Consensus 168 ~~w~~~~~~~l~l~~iyP~lI~PLFnk--ftPLe------dgeLr~~Ie~La~r~GFp-~~~I~V~d~SkrS~hsNAyf~ 238 (295)
..+++.+...++..+..+.++.-..+. ..+.. ...+..++++++.+.|.| .++++++| +..+|||.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~v~i~~----~~~~NAFa~ 133 (302)
T COG0501 58 IALLLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILE----TPQPNAFAL 133 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhceeecccccccchHHHHHHHHHHHHHHHHCCCCCCCeeEEec----CCCccceec
Confidence 345555666666667777666655543 22211 124555899999999999 89999999 789999999
Q ss_pred cCC-CCcEEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 239 GFF-KNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 239 G~g-~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
|.+ ++++||+||+|++. +++|||.|||||
T Consensus 134 g~~~~~~~V~vt~gLl~~----------------------------l~~dEl~aVlaH 163 (302)
T COG0501 134 GGGPKNGRVVVTTGLLDL----------------------------LNDDELEAVLAH 163 (302)
T ss_pred CCCCCCeeEEecHHHHhh----------------------------CCHHHHHHHHHH
Confidence 986 77999999999998 999999999999
No 13
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=96.83 E-value=0.0053 Score=57.66 Aligned_cols=71 Identities=31% Similarity=0.514 Sum_probs=58.5
Q ss_pred hhCCCccCCCchHHHHHHHHHHhCCCCC-CcEEEEeCCCCCCCccEEEecCCCCcEEEEehhhhhhhcCCCcccCCCCCC
Q psy7467 191 LFDKYTPLPDGELKSRIEQLSASVKFPL-KKLYVVEGSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGD 269 (295)
Q Consensus 191 LFnkftPLedgeLr~~Ie~La~r~GFp~-~~I~V~d~SkrS~hsNAyf~G~g~~KrIVL~DTLL~~~~~~~~~~~~~~~~ 269 (295)
+..+.+|.+|+++.+.+++.+++.|++- -+|++-+ .-...+.+|+.+ .+|++-+.+.++
T Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~s~-----~i~sP~~~G~~~-p~I~lP~~~~~~-------------- 190 (299)
T PF05569_consen 131 LLRKARPVEDEELQALLEECKEELGIKRPIRIRVSS-----GISSPFVFGFLR-PVIVLPESLLED-------------- 190 (299)
T ss_pred HHHhccccCcHHHHHHHHHHHHHhCCCCceEEEEcC-----CCCCCeeecCcc-eEEEecCccccc--------------
Confidence 5677899999999999999999999773 3444433 445678899865 789999999987
Q ss_pred CCcccccccccCCCCChhhhhhcccC
Q psy7467 270 SEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 270 ~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
++++|+.+||+|
T Consensus 191 --------------~~~~el~~il~H 202 (299)
T PF05569_consen 191 --------------LSEEELRAILLH 202 (299)
T ss_pred --------------cCHHHHHHHHHH
Confidence 899999999999
No 14
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.05 E-value=0.051 Score=55.05 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=59.0
Q ss_pred HHHHHHHhhhhHhhhh-CCCccCCCchHHHHHHHHHH----hCCCCCC--cEEEEeCCCCCCCccEEEe-cCCCCcEEEE
Q psy7467 177 SLFLMTIYPEFIAPLF-DKYTPLPDGELKSRIEQLSA----SVKFPLK--KLYVVEGSKRSEHSNAYFY-GFFKNKRIVL 248 (295)
Q Consensus 177 ~l~l~~iyP~lI~PLF-nkftPLedgeLr~~Ie~La~----r~GFp~~--~I~V~d~SkrS~hsNAyf~-G~g~~KrIVL 248 (295)
+.-.-+-++....+-- +....++|.+|.+-|.++.. .+|-+.. .+++|+ +..-|||.+ | .+|+|
T Consensus 45 s~~qev~~g~~~~~Qlr~~~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~----d~~iNAFA~~G----g~v~v 116 (484)
T COG4783 45 SPAQEVALGDPANAQLRGSVPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVN----DDSINAFATPG----GYVVV 116 (484)
T ss_pred CHHHHHHhhHHHHHHhccCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEec----CCccchhhcCC----ceEEE
Confidence 3333455555554444 33344589998888877655 4566533 467777 678999999 7 58999
Q ss_pred ehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 249 FDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 249 ~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
.-+|+..- =+++|+.+||||
T Consensus 117 ntGLll~a---------------------------e~esElagViAH 136 (484)
T COG4783 117 NTGLLLTA---------------------------ENESELAGVIAH 136 (484)
T ss_pred ehHHHHhc---------------------------CCHHHHHHHHHH
Confidence 99999871 278899999999
No 15
>KOG2661|consensus
Probab=83.65 E-value=0.9 Score=44.65 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=33.0
Q ss_pred EEEEeCCCCCCCccEEEecCCCCcEEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCC-ChhhhhhcccC
Q psy7467 221 LYVVEGSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGC-DTEEVLAVLAH 295 (295)
Q Consensus 221 I~V~d~SkrS~hsNAyf~G~g~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl-~~~EIlAVLAH 295 (295)
|.|+| +..+|||+--=| +|++|.++|.. | +++|+.+||||
T Consensus 241 ihVVn----dPipNAFvLPgG---KvfVFtgiLn~----------------------------ck~ddglAtvLgH 281 (424)
T KOG2661|consen 241 IHVVN----DPIPNAFVLPGG---KVFVFTGILNS----------------------------CKDDDGLATVLGH 281 (424)
T ss_pred EEEec----CCCCceeeccCC---eEEEEechhhc----------------------------ccChHHHHHHHHH
Confidence 78888 466999987433 59999999987 6 56799999999
No 16
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=80.48 E-value=9.1 Score=37.47 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecCCCCcEEEEehhhhhhhcCCCcccCCCCCCCCcccccccc
Q psy7467 200 DGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGA 279 (295)
Q Consensus 200 dgeLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (295)
+.|.++.++++.++..- ++ -++.+|++ -.|=-++|..+ -+||+-+.+.++
T Consensus 135 e~d~~~~~~~~~~~~~~--k~-i~ir~s~~--i~~P~v~gl~k-p~IvlP~d~~~r------------------------ 184 (337)
T COG4219 135 EVDKRKIVTILKNHQYK--KH-ILIRKSKA--IDGPMVFGLVK-PCIVLPADFVER------------------------ 184 (337)
T ss_pred cccHHHHHHHHHHhhhc--cC-eeEeeccc--CCCceeeccCc-ceEEccHHHHhh------------------------
Confidence 34677777777666543 34 34555554 44455678766 589999999998
Q ss_pred cCCCCChhhhhhcccC
Q psy7467 280 NKKGCDTEEVLAVLAH 295 (295)
Q Consensus 280 ~~~gl~~~EIlAVLAH 295 (295)
++++|+.-|++|
T Consensus 185 ----~~~ee~~yIilH 196 (337)
T COG4219 185 ----LTDEELKYIILH 196 (337)
T ss_pred ----cCHHhhhhhHhH
Confidence 899999999998
No 17
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=72.77 E-value=5.5 Score=37.57 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccC-----CCchHHHHHHHHH
Q psy7467 162 GNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPL-----PDGELKSRIEQLS 211 (295)
Q Consensus 162 G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPL-----edgeLr~~Ie~La 211 (295)
-+.||+|++.+.++|.++-.+.||.+ |.++.+|+- +.+++.+++.+..
T Consensus 26 ~P~ww~~~f~~~i~~~~~y~~~yp~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~ 78 (285)
T TIGR00782 26 LPRWWLWTFYATIVWGFGYLVAYPAW--PLVSGATKGLLGWSSRSQVEEEIKKFN 78 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccc--CCccccCCCccCcCHHHHHHHHHHHHH
Confidence 36799999999999999998899865 777544442 2345655555443
No 18
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=67.81 E-value=56 Score=28.87 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.1
Q ss_pred HhhhhCCCccCCCchHHHHHHHHH
Q psy7467 188 IAPLFDKYTPLPDGELKSRIEQLS 211 (295)
Q Consensus 188 I~PLFnkftPLedgeLr~~Ie~La 211 (295)
.+|.=++-+|+.++|.+.+....+
T Consensus 118 ~APv~~~~kpi~~~e~~k~lk~~s 141 (184)
T smart00793 118 YAPADTEKQPVIPEKLKKKLKKKS 141 (184)
T ss_pred cCCcccccCCCCCHHHHHHHHHHH
Confidence 479999999999988877766544
No 19
>PRK05320 rhodanese superfamily protein; Provisional
Probab=63.14 E-value=8.8 Score=35.95 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=42.9
Q ss_pred hhCCCccCCCc-hHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecCCCCcEEEEehhhhh
Q psy7467 191 LFDKYTPLPDG-ELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKRIVLFDTLLK 254 (295)
Q Consensus 191 LFnkftPLedg-eLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~KrIVL~DTLL~ 254 (295)
.|+||+|++|. ++++.+.++|++.|.. .+|++-+ ..-|+-++|- ..+|=.+=+.|.
T Consensus 7 ~~Y~f~~i~~~~~~~~~~~~~~~~~~~~-G~i~ia~-----eGiN~t~~g~--~~~id~~~~~l~ 63 (257)
T PRK05320 7 AAYKFVSLDDPETLRPLVLARCEALGLK-GTILLAP-----EGINLFLAGT--REAIDAFYAWLR 63 (257)
T ss_pred EEEceeecCCHHHHHHHHHHHHHHCCCe-EEEEEcC-----CCceEEEEee--HHHHHHHHHHHh
Confidence 68899999885 5999999999999986 8888877 5679999884 344444434443
No 20
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=59.17 E-value=13 Score=27.61 Aligned_cols=46 Identities=13% Similarity=0.285 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhCCCccCCCchHHHHHHHHHHhCCCCCCcE
Q psy7467 168 YLWVFIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKL 221 (295)
Q Consensus 168 ~~w~~~~~~~l~l~~iyP~lI~PLFnkftPLedgeLr~~Ie~La~r~GFp~~~I 221 (295)
++.++..++.++...+||.+|.|+.| .+| ++++++ -.|.|++-++|
T Consensus 7 ~~~~~ggfVg~iG~a~Ypi~~~Pmm~------~ee-Yk~~Q~-~nR~gI~qedv 52 (58)
T PF15061_consen 7 YALFVGGFVGLIGAALYPIYFRPMMN------PEE-YKKEQK-INRAGIKQEDV 52 (58)
T ss_pred chhhHHHHHHHHHHHHhhhhcccccC------hHH-HHHHHH-HHHhcccHhhc
Confidence 44556666777778899999998886 122 233333 34666654443
No 21
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=58.26 E-value=14 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhh
Q psy7467 162 GNMVFLYLWVFIILMSLFLMTIYPEF 187 (295)
Q Consensus 162 G~~~wl~~w~~~~~~~l~l~~iyP~l 187 (295)
-+.||++++...++++++-.+.||.+
T Consensus 20 lP~ww~~~f~~tivfa~~Y~~~yp~~ 45 (51)
T PF14715_consen 20 LPRWWLWLFYGTIVFAVGYLVLYPGL 45 (51)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36799999999999999988888853
No 22
>PRK01415 hypothetical protein; Validated
Probab=58.04 E-value=12 Score=35.21 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=38.2
Q ss_pred hhhCCCccCCCc-hHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecC
Q psy7467 190 PLFDKYTPLPDG-ELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGF 240 (295)
Q Consensus 190 PLFnkftPLedg-eLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~ 240 (295)
-.|++|+|++|. ++++++.++|++.|.. .+|++-+ ..-|+-++|-
T Consensus 8 ~~fY~f~~i~~~~~~~~~l~~~~~~~~~~-G~i~la~-----EGIN~tisg~ 53 (247)
T PRK01415 8 LSAYSFVNIEEPANLIPKLLLIGKRKYVR-GTILLAN-----EGFNGSFSGS 53 (247)
T ss_pred EEEEccccCCCHHHHHHHHHHHHHHcCCe-eEEEEcc-----CccceEeeCC
Confidence 378899999885 5999999999999985 8888877 5669999886
No 23
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=52.33 E-value=15 Score=35.64 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=39.0
Q ss_pred hhhCCCccCCCc-hHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecC
Q psy7467 190 PLFDKYTPLPDG-ELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGF 240 (295)
Q Consensus 190 PLFnkftPLedg-eLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~ 240 (295)
-.|++|+|++|. ++++.+.+++++.|.. .+|++.+ ..-|+.+.|-
T Consensus 8 la~Y~f~~i~dp~~~~~~l~~~~~~~~vk-GrillA~-----EGINgtvsG~ 53 (308)
T COG1054 8 LAYYKFVPIEDPEALRDPLLALCKALGVK-GRILLAH-----EGINGTVSGS 53 (308)
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCce-eEEEEcc-----CCcceeEecC
Confidence 367899999875 6999999999999998 7888887 6789999985
No 24
>PRK04351 hypothetical protein; Provisional
Probab=51.67 E-value=31 Score=29.87 Aligned_cols=66 Identities=20% Similarity=0.408 Sum_probs=46.1
Q ss_pred CCCchHHHHHHHHHHh-CCCCCCcEEEEeCCCCCCCccEEEecCCCCcEEEEehhhhhhhcCCCcccCCCCCCCCccccc
Q psy7467 198 LPDGELKSRIEQLSAS-VKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLIST 276 (295)
Q Consensus 198 LedgeLr~~Ie~La~r-~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~ 276 (295)
+.++||.+-+++++.. .+-|.+.-..++..-|++. -+|. -+...|-+...+++.
T Consensus 1 ~~~~~l~~l~~~~s~~~F~~~f~~~v~~n~Rlrttg-G~~~---l~~~~I~lnp~ll~~--------------------- 55 (149)
T PRK04351 1 MTNQELQRLVEEISLEYFGKPFRHQAYFNKRLRTTG-GRYL---LKDHHIEFNPKMLEE--------------------- 55 (149)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEeccchhhh-heee---cCCCeEEeCHHHHhh---------------------
Confidence 3578899989998875 4545444555664444443 3442 245789999999987
Q ss_pred ccccCCCCChhhhhhcccC
Q psy7467 277 EGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 277 ~~~~~~gl~~~EIlAVLAH 295 (295)
.+++++..||+|
T Consensus 56 -------~~~~~l~~vv~H 67 (149)
T PRK04351 56 -------YGLEELIGIIKH 67 (149)
T ss_pred -------ccHHHHHhhHHH
Confidence 578899999988
No 25
>PRK12768 CysZ-like protein; Reviewed
Probab=51.47 E-value=1e+02 Score=28.72 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7467 136 QIKSFIVSLILSIPLTGAVVYIIQV 160 (295)
Q Consensus 136 ~lK~~lL~~vl~~pl~~~~~~ii~~ 160 (295)
..|+..+++++...+..++.+.+.+
T Consensus 21 l~~~~~lt~~l~~~~~~~~~~~~~~ 45 (240)
T PRK12768 21 FWKVLGLTLLLLVVLWFALRRLFSW 45 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666665555555555544
No 26
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=50.67 E-value=22 Score=30.19 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=48.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhccCCCHHHHHHHHHHhHhhhhHHhHHHH
Q psy7467 47 KMEFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYSLDKNVFSMFKET 120 (295)
Q Consensus 47 ~~~~~~p~~~~~~il~~~~~~~l~e~yL~~RQ~r~~~~~~~vP~~l~~~~s~e~f~Ks~~Y~~~k~~f~~~~~l 120 (295)
.+...||..|-+.+++++.++.++...|-.|+++.-++.+..|.+ .=++|.......=..|...+...+..
T Consensus 26 ~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~~~~---k~~pE~~~~~es~~kd~~sL~~l~et 96 (125)
T PF15048_consen 26 FFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQPQE---KQTPEVLSLDESGLKDDNSLNILRET 96 (125)
T ss_pred heecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccccccc---ccCHHHhhcccccccccccccHHHHH
Confidence 356688999999999999999999999999999877666555544 22444433333334455555555443
No 27
>smart00361 RRM_1 RNA recognition motif.
Probab=50.06 E-value=33 Score=24.99 Aligned_cols=38 Identities=11% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHhCCCCCCcEE--EEeCCC--CCCCccEEE
Q psy7467 199 PDGELKSRIEQLSASVKFPLKKLY--VVEGSK--RSEHSNAYF 237 (295)
Q Consensus 199 edgeLr~~Ie~La~r~GFp~~~I~--V~d~Sk--rS~hsNAyf 237 (295)
++++|++.+++.+.+.| ++.++. ++|... ..+..+||+
T Consensus 1 ~~~~l~~~~~~~~~~fG-~v~~v~~v~~~~~~~~~~~rG~~fV 42 (70)
T smart00361 1 KDEDFEREFSEEEEYFG-EVGKINKIYIDNVGYENHKRGNVYI 42 (70)
T ss_pred CchhHHHHHHHHHHhcC-CeeEEEEEEeCCCCCCCCCcEEEEE
Confidence 35789999999999999 888885 676433 233444544
No 28
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=49.32 E-value=1.4e+02 Score=26.23 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHhCCCC-CCcEEEEe
Q psy7467 201 GELKSRIEQLSASVKFP-LKKLYVVE 225 (295)
Q Consensus 201 geLr~~Ie~La~r~GFp-~~~I~V~d 225 (295)
++.|++|+++.++-|-= .-+||.+.
T Consensus 126 ~~~K~~i~~i~~~Kgei~FYDVy~la 151 (155)
T PF10777_consen 126 DEIKQGIQRIISTKGEISFYDVYSLA 151 (155)
T ss_pred HHHHHHHHHHHHhCCceeEEEeEEee
Confidence 46888888888776532 34555443
No 29
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=47.66 E-value=1.9e+02 Score=25.13 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHhCCCCCCcEEEEe
Q psy7467 201 GELKSRIEQLSASVKFPLKKLYVVE 225 (295)
Q Consensus 201 geLr~~Ie~La~r~GFp~~~I~V~d 225 (295)
+..-.=|+.+|+..|.+.++|+|=.
T Consensus 79 ~~~~~fi~~vA~~~~V~~~~v~VNs 103 (149)
T PF11694_consen 79 SQMVHFIESVAKDLGVSKEEVYVNS 103 (149)
T ss_pred HHHHHHHHHHHHHhCCChheEEEec
Confidence 4577779999999999999999643
No 30
>PRK08156 type III secretion system protein SpaS; Validated
Probab=45.62 E-value=3.2e+02 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=21.5
Q ss_pred hc-CChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 125 MN-TTYGFFVKDQIKSFIVSLILSIPLTGA 153 (295)
Q Consensus 125 FN-~T~~~fl~D~lK~~lL~~vl~~pl~~~ 153 (295)
|+ +++-.+++..+|..+++.+....+-..
T Consensus 126 FS~~~lvel~KsllKv~li~~v~~~~~~~~ 155 (361)
T PRK08156 126 FSLRTVKEFVKALLYLIVFALTAYVFWKNY 155 (361)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 888888999999888877766555433
No 31
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=44.05 E-value=3.3e+02 Score=26.93 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=29.6
Q ss_pred hHHhHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 113 VFSMFKETVSNVMN-TTYGFFVKDQIKSFIVSLILSIPLTGAV 154 (295)
Q Consensus 113 ~f~~~~~l~~~iFN-~T~~~fl~D~lK~~lL~~vl~~pl~~~~ 154 (295)
+++.++++ ..+|+ +++-.+++..+|..+++.+....+-.-.
T Consensus 129 rlNPi~Gl-KriFS~~~l~el~KsllK~~~i~~i~~~~~~~~~ 170 (358)
T PRK13109 129 RISPMKGW-TRIFGTSGQVEFLKSLFKFLSVSVVVLLLLRSER 170 (358)
T ss_pred hcCHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 45689 9999999999998888877766654443
No 32
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=43.82 E-value=1.4e+02 Score=27.94 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=23.4
Q ss_pred HHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCcc
Q psy7467 157 IIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTP 197 (295)
Q Consensus 157 ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftP 197 (295)
...+.+...++...+..++. +++....-..+-+.+.+-+|
T Consensus 66 ~~~r~~~k~~l~l~~~l~~~-i~~~~~~k~~iK~~~~epRP 105 (244)
T PRK10699 66 WCLRFRLKAALVLFAILAAA-ILVGQGVKSWIKERVQEPRP 105 (244)
T ss_pred HHHHhchhHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCc
Confidence 33345555555544443333 33334446789999998888
No 33
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=41.82 E-value=1.5e+02 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.168 Sum_probs=11.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHh
Q psy7467 162 GNMVFLYLWVFIILMSLFLMTIY 184 (295)
Q Consensus 162 G~~~wl~~w~~~~~~~l~l~~iy 184 (295)
++..-+...+..++++++..+.|
T Consensus 42 ~~~~~~~~i~~lA~vQi~VqL~~ 64 (109)
T PRK10582 42 SPAVILGTILAMAVVQILVHLVC 64 (109)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 34433444445555665555443
No 34
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=41.65 E-value=91 Score=27.65 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH-HHHHHhhh
Q psy7467 144 LILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSL-FLMTIYPE 186 (295)
Q Consensus 144 ~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l-~l~~iyP~ 186 (295)
+++..++.++.++..-...++|+.++.+..+++.. +..+++|.
T Consensus 27 l~Ll~av~~~~~~~~~~~~~~w~~~a~~av~l~~~vv~l~iiP~ 70 (161)
T COG3402 27 LVLLIAVAAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQ 70 (161)
T ss_pred HHHHHHHHHHHHHheeccCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 33444444444444333446677766555544433 33455664
No 35
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=41.13 E-value=1.4e+02 Score=25.89 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.3
Q ss_pred hHhhhhCCCccCCCchHHHHHH
Q psy7467 187 FIAPLFDKYTPLPDGELKSRIE 208 (295)
Q Consensus 187 lI~PLFnkftPLedgeLr~~Ie 208 (295)
..+|.-++-+|++++|.|.+..
T Consensus 117 ~~aPv~~~~kpl~~~e~~~~~K 138 (185)
T PF04647_consen 117 IYAPVDTPNKPLDSEEKRKKLK 138 (185)
T ss_pred HhcccccccCcCChHHHHHHHH
Confidence 3478888899998887666544
No 36
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=41.00 E-value=22 Score=26.43 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.2
Q ss_pred CchhccCCCHHHHHHHHHHhHhhh
Q psy7467 89 PHQIAHGMDAESFEKSRRYSLDKN 112 (295)
Q Consensus 89 P~~l~~~~s~e~f~Ks~~Y~~~k~ 112 (295)
|-.+.+.+.+|+|+|.|+++++..
T Consensus 24 pi~~~Pmm~~eeYk~~Q~~nR~gI 47 (58)
T PF15061_consen 24 PIYFRPMMNPEEYKKEQKINRAGI 47 (58)
T ss_pred hhhcccccChHHHHHHHHHHHhcc
Confidence 556677899999999999998754
No 37
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=40.72 E-value=3.6e+02 Score=26.41 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=21.1
Q ss_pred hc-CChHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 125 MN-TTYGFFVKDQIKSFIVSLILSIPLTG 152 (295)
Q Consensus 125 FN-~T~~~fl~D~lK~~lL~~vl~~pl~~ 152 (295)
|+ +++-.+++..+|..+++.+....+-.
T Consensus 130 FS~~~l~el~K~llK~~~~~~v~~~~~~~ 158 (342)
T TIGR01404 130 FSLRSLKELLKSILKLVALALIFYLFLKN 158 (342)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 88888888888888887766655544
No 38
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=40.46 E-value=35 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecCCC-CcEEEEehhhhh
Q psy7467 201 GELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFK-NKRIVLFDTLLK 254 (295)
Q Consensus 201 geLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~-~KrIVL~DTLL~ 254 (295)
..+.+++..++++.|.+.++|.+-+...| +|.+. .+.|-+.-.|+.
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~i~ir~~ksr--------WGsc~~~~~I~ln~~L~~ 158 (205)
T PF01863_consen 112 EYLPERLKKYAKKLGLPPPKIKIRDMKSR--------WGSCSSKGNITLNWRLVM 158 (205)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEeehhhc--------cccCCCCCcEEeeccccc
Confidence 46778888899999999999999886554 45443 456667666664
No 39
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=39.52 E-value=89 Score=28.37 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccCCCchHHHH
Q psy7467 127 TTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSR 206 (295)
Q Consensus 127 ~T~~~fl~D~lK~~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPLedgeLr~~ 206 (295)
-+.|.-.+..+-.+++++.+.... -|+..+...+.|. |+..+++..+.++.| +|--.+..|+.-.|+++|
T Consensus 72 na~GaHak~SI~Ctl~Sll~fv~~----py~~~ni~~Nn~~--vLa~~iiglL~i~~y----APa~teahplvg~e~~kr 141 (198)
T COG4512 72 NAFGAHAKHSIGCTLLSLLMFVLI----PYVPFNIDANNYA--VLAYFIIGLLLIFKY----APADTEAHPLVGTEHRKR 141 (198)
T ss_pred HcccccccccccchHHHHHHHHHH----HHHHhhcccchHH--HHHHHHHHHHHHHhc----CccccccCCCccHHHHHH
Confidence 333444444444555554443322 2333333444433 444444555555665 488888999998899998
Q ss_pred HHHHHH
Q psy7467 207 IEQLSA 212 (295)
Q Consensus 207 Ie~La~ 212 (295)
....|.
T Consensus 142 ~Kk~a~ 147 (198)
T COG4512 142 LKKRAA 147 (198)
T ss_pred HHHHHH
Confidence 877654
No 40
>PF07114 DUF1370: Protein of unknown function (DUF1370); InterPro: IPR009801 This family consists of several hypothetical eukaryotic proteins of around 200 residues in length. Members of this family seem to be specific to mammals and their function is unknown.
Probab=39.31 E-value=60 Score=29.42 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=28.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Q psy7467 50 FTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVP 89 (295)
Q Consensus 50 ~~~p~~~~~~il~~~~~~~l~e~yL~~RQ~r~~~~~~~vP 89 (295)
++-|. +......++++.++-.||..||++.+.+..+.|
T Consensus 147 isqpv--~~km~~~i~~Q~~fg~~l~~~qy~~~~k~l~~~ 184 (187)
T PF07114_consen 147 ISQPV--FRKMLFPILFQTFFGAYLGSRQYKIYIKALQLP 184 (187)
T ss_pred HHhHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 44453 344567777999999999999999887764444
No 41
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=39.09 E-value=4.1e+02 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=20.9
Q ss_pred hc-CChHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 125 MN-TTYGFFVKDQIKSFIVSLILSIPLT 151 (295)
Q Consensus 125 FN-~T~~~fl~D~lK~~lL~~vl~~pl~ 151 (295)
|+ +++-.+++..+|..+++.+....+.
T Consensus 138 FS~~~l~el~KsllKv~li~~v~~~~~~ 165 (386)
T PRK12468 138 FSSQALAELLKAILKATLVGWVTGLFLW 165 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 8888889999998888777655543
No 42
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=39.06 E-value=1.6e+02 Score=23.25 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhh
Q psy7467 140 FIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYP 185 (295)
Q Consensus 140 ~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP 185 (295)
..+.++.+.+++.+.+++-....+..|+-+.+...+..++...+.|
T Consensus 29 ~fvi~ivg~ivv~~~l~~~~~~~pp~wv~~~i~~pl~~~l~l~lLr 74 (86)
T PF06170_consen 29 YFVILIVGHIVVPLALWVEMAFRPPLWVHLAIWLPLTLALSLLLLR 74 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777887777777776655544444444444443
No 43
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=39.05 E-value=69 Score=24.67 Aligned_cols=44 Identities=27% Similarity=0.505 Sum_probs=31.9
Q ss_pred cCCCchHHHHHHHHHHhCCCCCCcEEEEeC-----CCCCCCccEEEecCCCCcEEEE
Q psy7467 197 PLPDGELKSRIEQLSASVKFPLKKLYVVEG-----SKRSEHSNAYFYGFFKNKRIVL 248 (295)
Q Consensus 197 PLedgeLr~~Ie~La~r~GFp~~~I~V~d~-----SkrS~hsNAyf~G~g~~KrIVL 248 (295)
|||+ .+|.++|. ..|..+++|-|-.+ .-++....||..| ..|++
T Consensus 1 PLp~-~~r~~~e~---~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G----~~I~f 49 (79)
T PF13699_consen 1 PLPE-SIRSRLER---AFGADLSDVRVHTGPAASRAAAALGARAFTVG----NDIYF 49 (79)
T ss_pred CCCH-HHHHHHHH---HhCCCccceEEEeCCchhhhhhccCCeEEEEC----CEEEE
Confidence 6764 46666554 77888999988877 3456778888888 56776
No 44
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=38.41 E-value=1.5e+02 Score=26.78 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=18.0
Q ss_pred HhhhhCCCccCCCchHHHHHHHH
Q psy7467 188 IAPLFDKYTPLPDGELKSRIEQL 210 (295)
Q Consensus 188 I~PLFnkftPLedgeLr~~Ie~L 210 (295)
.+|.=++-+|+.++++|++....
T Consensus 130 yAP~dt~nkPi~~~~~rk~lK~~ 152 (210)
T PRK01100 130 YAPADTESLPLIGEKLRKTLKRK 152 (210)
T ss_pred cCCcCCccCCCCCHHHHHHHHHH
Confidence 37888999999888888766544
No 45
>TIGR03782 Bac_Flav_CT_J Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6.
Probab=38.20 E-value=3.9e+02 Score=26.33 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=6.4
Q ss_pred cCCCHHHHHH
Q psy7467 94 HGMDAESFEK 103 (295)
Q Consensus 94 ~~~s~e~f~K 103 (295)
-..+.|+|+|
T Consensus 124 ~lv~~e~~D~ 133 (322)
T TIGR03782 124 YLVSDEEFDR 133 (322)
T ss_pred hccChHHHhh
Confidence 3457777766
No 46
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=37.90 E-value=82 Score=30.59 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccCCCchHHHHHHHHHHhCCCCCCcEEE
Q psy7467 166 FLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYV 223 (295)
Q Consensus 166 wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPLedgeLr~~Ie~La~r~GFp~~~I~V 223 (295)
|+.+.+-..+..+.+.+..|.-++ +|-+...++-..|..++.++.++.|=|.+.||.
T Consensus 248 ~~~~p~~~~l~~~~l~~~~P~a~A-lFPQ~~si~~~~LEpe~~~~~~~~g~~~~~vyy 304 (308)
T PF03820_consen 248 WLNAPIQLALIGLCLGFMLPLACA-LFPQRSSISVSKLEPELQELTEKKGPPPTTVYY 304 (308)
T ss_pred hhhhhHHhHHHHHHHHHhhhhHHh-hcccccccchHhcCHHHHHHHhhcCCCCCEEEe
Confidence 444444445555556677787776 888888888888888999999999999888874
No 47
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=37.75 E-value=2.7e+02 Score=27.38 Aligned_cols=90 Identities=11% Similarity=0.210 Sum_probs=50.5
Q ss_pred hc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCcc--CC
Q psy7467 125 MN-TTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNM--VFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTP--LP 199 (295)
Q Consensus 125 FN-~T~~~fl~D~lK~~lL~~vl~~pl~~~~~~ii~~~G~~--~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftP--Le 199 (295)
|+ .....|+.|..-...++..+++.+.+++....-..+.+ -......+.+++.++.....-.+|.-+.+--++ +=
T Consensus 80 ~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii 159 (371)
T PF10011_consen 80 FSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNII 159 (371)
T ss_pred cchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66 67788999999999999988887776666544443332 122223333444444444555566555532222 10
Q ss_pred ---CchHHHHHHHHHHhC
Q psy7467 200 ---DGELKSRIEQLSASV 214 (295)
Q Consensus 200 ---dgeLr~~Ie~La~r~ 214 (295)
..+.++.|+++..+-
T Consensus 160 ~~i~~~~~~~i~~~~~~~ 177 (371)
T PF10011_consen 160 ARIEEDARKAIDRLYPEP 177 (371)
T ss_pred HHHHHHHHHHHHHhhcCc
Confidence 134555555555443
No 48
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=37.47 E-value=1.9e+02 Score=24.12 Aligned_cols=48 Identities=23% Similarity=0.501 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHHHHHHHHHHHh
Q psy7467 137 IKSFIVSLILSIPLTGAVVYIIQVG--GNMVFLYLWVFIILMSLFLMTIY 184 (295)
Q Consensus 137 lK~~lL~~vl~~pl~~~~~~ii~~~--G~~~wl~~w~~~~~~~l~l~~iy 184 (295)
+|+.+++.++...++.+-.|+.-.. +...-+...+..+++++++..+|
T Consensus 17 ~k~y~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvy 66 (111)
T COG3125 17 LKSYLIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVY 66 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544332 23334444455555666655544
No 49
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=37.41 E-value=1.2e+02 Score=27.85 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH
Q psy7467 139 SFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTI 183 (295)
Q Consensus 139 ~~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~i 183 (295)
..+.++.....++.+++.|..|-|..+++.+.++.-++.+++.-+
T Consensus 5 N~~~~~ga~~vi~GalfKi~h~~~~~~~l~~g~~te~lvFfiSAF 49 (202)
T TIGR03513 5 NIVYGWGAAVVILGALFKIMHWPMGNPMLFVGLITEALIFAISAF 49 (202)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcc
Confidence 344444445556666778888888888888777777766666544
No 50
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=36.22 E-value=1.5e+02 Score=21.36 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy7467 167 LYLWVFIILMSLF 179 (295)
Q Consensus 167 l~~w~~~~~~~l~ 179 (295)
+-.|.....+.+.
T Consensus 31 l~a~~~a~~vAfp 43 (60)
T PF11391_consen 31 LKAWLIAWPVAFP 43 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 3334443333333
No 51
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=36.13 E-value=41 Score=30.98 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecCCCCcEEEEehhhhhhhcCCCcccCCCCCCCCccccccccc
Q psy7467 201 GELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGAN 280 (295)
Q Consensus 201 geLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~g~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (295)
..+...+..++++.|.+...+.+-+.++|. |.+..+..+.++..+..
T Consensus 123 ~~l~~~~~~~~~~l~~~~~~~~ik~~k~~W--------GScs~~~~i~~~~~l~~------------------------- 169 (223)
T COG1451 123 EILEIRLKEYAKKLGVPPRAIKLKNMKRRW--------GSCSKAGEIRFNWRLVM------------------------- 169 (223)
T ss_pred HHHHHHHHHHHHHhCCCccceeeeecccee--------eeecCCCcEEeehhhhc-------------------------
Confidence 357777888899999999999999877654 44433336667777766
Q ss_pred CCCCChhhhhhcccC
Q psy7467 281 KKGCDTEEVLAVLAH 295 (295)
Q Consensus 281 ~~gl~~~EIlAVLAH 295 (295)
.+++.|..|++|
T Consensus 170 ---~p~~~i~YVvvH 181 (223)
T COG1451 170 ---APEEVIDYVVVH 181 (223)
T ss_pred ---CCHHHHHHHHHH
Confidence 688899999888
No 52
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=35.83 E-value=73 Score=28.32 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhCCCCCCcEEE--EeCCCCCCCcc-EEEecCCCCcEEEEehhhhhhhcCCCcccCCCCCCCCccccccc
Q psy7467 202 ELKSRIEQLSASVKFPLKKLYV--VEGSKRSEHSN-AYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEG 278 (295)
Q Consensus 202 eLr~~Ie~La~r~GFp~~~I~V--~d~SkrS~hsN-Ayf~G~g~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (295)
.+++.++++.+...-|--.|++ .|..++....| -+..|.+-.-+|.|+= +-..
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~----------------------- 59 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPND----------------------- 59 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCc-----------------------
Confidence 3555666666666655445544 44444333322 3444444455666653 2222
Q ss_pred ccCCCCChhhhhhcccC
Q psy7467 279 ANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 279 ~~~~gl~~~EIlAVLAH 295 (295)
.+.++|.|++||
T Consensus 60 -----~~~~~l~~~iaH 71 (195)
T PF10026_consen 60 -----YSLEELPALIAH 71 (195)
T ss_pred -----ccHHHHHHHHHH
Confidence 577899999999
No 53
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=35.60 E-value=1.9e+02 Score=23.28 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHh
Q psy7467 132 FVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIY 184 (295)
Q Consensus 132 fl~D~lK~~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iy 184 (295)
|.++++.++++++++...-.++..+ ...++..-+...+..++.|++..+.|
T Consensus 5 ~~~~yviGFiLSiiLT~i~F~~v~~--~~~~~~~~~~~i~~lA~iQi~VqL~~ 55 (94)
T TIGR02901 5 FPWKHVNGFILSLLLTFLALWVALY--SDLPLAMGLTIIIIFAFIQAGLQLIM 55 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH--ccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777765333222221 22345555555556666777665544
No 54
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=35.53 E-value=2.4e+02 Score=22.79 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cChhHHHHHHHHHHHHHHHHHHHh
Q psy7467 134 KDQIKSFIVSLILSIPLTGAVVYIIQV--GGNMVFLYLWVFIILMSLFLMTIY 184 (295)
Q Consensus 134 ~D~lK~~lL~~vl~~pl~~~~~~ii~~--~G~~~wl~~w~~~~~~~l~l~~iy 184 (295)
+.++.++++++++ +.+-.+++-. .++..-+...+..++++++....|
T Consensus 5 k~yviGFiLsliL----T~i~F~~v~~~~~~~~~~~~~i~~~A~iQi~vqL~~ 53 (96)
T TIGR02847 5 KSYLIGFVLSVIL----TAIPFGLVMSGTLSKGLTLVIIIVLAVVQILVHLVF 53 (96)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHccCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444 3333333322 334444444455556666665544
No 55
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.51 E-value=4.7e+02 Score=26.17 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=60.4
Q ss_pred hc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH--------HHHHHHHHHHHHHHHHHHhhhhHhhhhCC-
Q psy7467 125 MN-TTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMV--------FLYLWVFIILMSLFLMTIYPEFIAPLFDK- 194 (295)
Q Consensus 125 FN-~T~~~fl~D~lK~~lL~~vl~~pl~~~~~~ii~~~G~~~--------wl~~w~~~~~~~l~l~~iyP~lI~PLFnk- 194 (295)
|+ +++-.+++..+|.++++.+....+..-..-+++..+... -+..+++..+..+++.+....+.--.|+-
T Consensus 138 Fs~~~~vEllKsllKi~~v~~v~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~liia~~D~~~qr~~~~ 217 (363)
T COG1377 138 FSLQTLVELLKSLLKIVLVGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFYQRFQYI 217 (363)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 888889999999988888777666554444444433221 13334444444444444444444444431
Q ss_pred -------------CccCC-CchHHHHHHHHHH-------hCCCCCCcEEEEe
Q psy7467 195 -------------YTPLP-DGELKSRIEQLSA-------SVKFPLKKLYVVE 225 (295)
Q Consensus 195 -------------ftPLe-dgeLr~~Ie~La~-------r~GFp~~~I~V~d 225 (295)
|..-| |++.|.+++++++ ....|-.++.|.|
T Consensus 218 k~lkMtKqEVKdE~K~sEGdPeVKsr~Rq~~re~a~~rm~~~Vp~AdvVItN 269 (363)
T COG1377 218 KKLKMTKQEVKDEYKQSEGDPEVKSRIRQMQREIARRRMMSDVPKADVVITN 269 (363)
T ss_pred HHccCcHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHhhCCCCCEEeeC
Confidence 22222 3567888877766 3678888888887
No 56
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=35.28 E-value=4.5e+02 Score=25.97 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=29.3
Q ss_pred hHHhHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 113 VFSMFKETVSNVMN-TTYGFFVKDQIKSFIVSLILSIPLTGAVV 155 (295)
Q Consensus 113 ~f~~~~~l~~~iFN-~T~~~fl~D~lK~~lL~~vl~~pl~~~~~ 155 (295)
+++.+++ +..+|+ +++-.+++..+|..+++.+....+....-
T Consensus 127 rlNPi~G-~KriFS~~~l~el~KsllK~~~~~~v~~~~~~~~~~ 169 (359)
T PRK05702 127 KLNPLKG-LKRMFSAQGLVELLKSLLKVLLVGGVAYFVLWSNLD 169 (359)
T ss_pred hcCHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 345688 99999999999988888776655544443
No 57
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=33.58 E-value=69 Score=32.13 Aligned_cols=42 Identities=31% Similarity=0.369 Sum_probs=32.5
Q ss_pred cEEEEeCCCCCCCccEEEecCCCCcEEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 220 KLYVVEGSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 220 ~I~V~d~SkrS~hsNAyf~G~g~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
+|-|+| |..-|||..- .-++.++-+||.-. -+..|+.|||||
T Consensus 89 riTiln----SP~INAFALP---GGYlYitRGLlAla---------------------------nd~sEvAAVl~H 130 (479)
T COG4784 89 RITILN----SPNINAFALP---GGYLYITRGLLALA---------------------------NDSSEVAAVLAH 130 (479)
T ss_pred EEEEec----CCCccccccC---CceEEEehhHHHHc---------------------------CCHHHHHHHHHh
Confidence 467778 6888998752 24799999999861 266799999999
No 58
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=32.94 E-value=2e+02 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=20.4
Q ss_pred HHHhhhhHhhhhCCC----ccCCCchHHHHHHHHHHhCC
Q psy7467 181 MTIYPEFIAPLFDKY----TPLPDGELKSRIEQLSASVK 215 (295)
Q Consensus 181 ~~iyP~lI~PLFnkf----tPLedgeLr~~Ie~La~r~G 215 (295)
.+-..+.-.|+..+. +|..++||++-.+.+.++++
T Consensus 74 ~WGlNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N 112 (318)
T PF12725_consen 74 LWGLNYYRPPLSERLGLETEEYSTEELKELTEYLIEKAN 112 (318)
T ss_pred HhhhhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344555566777544 45666777666666655543
No 59
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=32.90 E-value=2.2e+02 Score=22.01 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhccCCCHHHHHHHHHHhHhhh
Q psy7467 61 IGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYSLDKN 112 (295)
Q Consensus 61 l~~~~~~~l~e~yL~~RQ~r~~~~~~~vP~~l~~~~s~e~f~Ks~~Y~~~k~ 112 (295)
+++.+++.....+|.+|..+... +-+|+++.++.++......
T Consensus 11 iif~ifVap~wl~lHY~~k~~~~----------~~ls~~d~~~L~~L~~~a~ 52 (75)
T TIGR02976 11 IIFVIFVAPLWLILHYRSKRKTA----------ASLSTDDQALLQELYAKAD 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhccC----------CCCCHHHHHHHHHHHHHHH
Confidence 34444445555566655422111 1267888888877665543
No 60
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=32.56 E-value=6.7e+02 Score=27.14 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy7467 59 GIIGFSWIVFLFEFYLSIRQR 79 (295)
Q Consensus 59 ~il~~~~~~~l~e~yL~~RQ~ 79 (295)
++...+.+..+++..+...|-
T Consensus 195 vl~ig~~~~~l~~~~l~~lr~ 215 (709)
T COG2274 195 VLAIGLLLAALFEALLRLLRT 215 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666766655554
No 61
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=32.49 E-value=19 Score=24.73 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.1
Q ss_pred CchHHHHHHHHHHhCCCCCCcE
Q psy7467 200 DGELKSRIEQLSASVKFPLKKL 221 (295)
Q Consensus 200 dgeLr~~Ie~La~r~GFp~~~I 221 (295)
+.+|.+++.+++++.|.|.+++
T Consensus 10 ~~el~~~L~~ls~~t~i~~S~L 31 (44)
T PF12651_consen 10 DKELYEKLKELSEETGIPKSKL 31 (44)
T ss_pred CHHHHHHHHHHHHHHCCCHHHH
Confidence 5789999999999999997654
No 62
>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins. Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane
Probab=31.90 E-value=1.9e+02 Score=27.16 Aligned_cols=14 Identities=36% Similarity=0.285 Sum_probs=11.7
Q ss_pred CCCCccEEEecCCC
Q psy7467 229 RSEHSNAYFYGFFK 242 (295)
Q Consensus 229 rS~hsNAyf~G~g~ 242 (295)
.+.|.=||+.|+|-
T Consensus 102 ~~~~~lA~v~GlGf 115 (238)
T PF06105_consen 102 ISRHQLAYVSGLGF 115 (238)
T ss_pred Cccceeeehhccch
Confidence 47889999999974
No 63
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=31.82 E-value=52 Score=31.70 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=35.9
Q ss_pred hhhCCCccCCC-chHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEecC
Q psy7467 190 PLFDKYTPLPD-GELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFYGF 240 (295)
Q Consensus 190 PLFnkftPLed-geLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~G~ 240 (295)
-+|+||+|+++ +++++.+.+.+...+.. ..+++.. .|.|+-..|-
T Consensus 7 ~~~Y~f~~i~~~~~~~~~l~~~~~~~d~r-g~i~~a~-----egIngtis~~ 52 (314)
T PRK00142 7 LLYYKYTPIEDPEAFRDEHLALCKSLGLK-GRILVAE-----EGINGTVSGT 52 (314)
T ss_pred EEEEccccCCCHHHHHHHHHHHHHHcCCe-eEEEEcC-----CCceEEEEec
Confidence 37899999987 46999999999999887 6666655 6778877764
No 64
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=31.09 E-value=3.6e+02 Score=24.00 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----cChhHHHHHHHHHHHHHHH
Q psy7467 136 QIKSFIVSLILSIPLTGAVVYIIQV-----GGNMVFLYLWVFIILMSLF 179 (295)
Q Consensus 136 ~lK~~lL~~vl~~pl~~~~~~ii~~-----~G~~~wl~~w~~~~~~~l~ 179 (295)
-+.++++..++++.++..+...+.. .-..+|-++.+.++.+.++
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w 160 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLW 160 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433332 1124555554444444443
No 65
>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.
Probab=30.82 E-value=3.1e+02 Score=23.93 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccC
Q psy7467 146 LSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPL 198 (295)
Q Consensus 146 l~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPL 198 (295)
++.|+..++...+-+-...+-.+.++...++.+.+..+.-.++...+.+.+|-
T Consensus 23 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~ 75 (193)
T cd03390 23 VGIPLLVIILISLFFRRSLWDLHTSLLGLLLSVSLNGVITNVLKNYAGRPRPD 75 (193)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 44555444444332111233334444444555555555566778888888884
No 66
>PF15179 Myc_target_1: Myc target protein 1
Probab=30.70 E-value=82 Score=28.67 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=20.6
Q ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 128 TYGFF-VKDQIKSFIVSLILSIPLTGAVVYII 158 (295)
Q Consensus 128 T~~~f-l~D~lK~~lL~~vl~~pl~~~~~~ii 158 (295)
-++.| +.|.+.++.++.++|+.+.++++.++
T Consensus 12 ~~~~f~~~~lIlaF~vSm~iGLviG~li~~Ll 43 (197)
T PF15179_consen 12 WLENFDWEDLILAFCVSMAIGLVIGALIWALL 43 (197)
T ss_pred chhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557 77888888888888865555444443
No 67
>PF13239 2TM: 2TM domain
Probab=30.44 E-value=2.4e+02 Score=21.44 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy7467 169 LWVFIILMSLFL 180 (295)
Q Consensus 169 ~w~~~~~~~l~l 180 (295)
+|++.+++..+-
T Consensus 49 ~Wgi~L~~h~~~ 60 (83)
T PF13239_consen 49 GWGIGLAIHALK 60 (83)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 68
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=30.43 E-value=5.4e+02 Score=25.35 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=28.2
Q ss_pred hHHhHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 113 VFSMFKETVSNVMN-TTYGFFVKDQIKSFIVSLILSIPLTGAV 154 (295)
Q Consensus 113 ~f~~~~~l~~~iFN-~T~~~fl~D~lK~~lL~~vl~~pl~~~~ 154 (295)
+++.++++ ..+|+ +++-.+++..+|..+++.+....+..-.
T Consensus 120 rlNP~~Gl-KriFs~~~l~el~Ksl~Kv~~~~~v~~~~~~~~~ 161 (349)
T PRK12721 120 KINPVSNA-KQIFSLKSVFELCKSLLKVVILSLIFAYLLHYYA 161 (349)
T ss_pred hcCHhHhH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555553 34588 8888899999998888777766554433
No 69
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=29.42 E-value=5.6e+02 Score=25.21 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=28.8
Q ss_pred hHHhHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 113 VFSMFKETVSNVMN-TTYGFFVKDQIKSFIVSLILSIPLTGAV 154 (295)
Q Consensus 113 ~f~~~~~l~~~iFN-~T~~~fl~D~lK~~lL~~vl~~pl~~~~ 154 (295)
+++.+++ +..+|+ +++-.+++..+|..+++.+....+..-.
T Consensus 120 rlNPi~G-~KriFS~~~l~el~KsllK~~~i~~v~~~~~~~~~ 161 (347)
T TIGR00328 120 KINPIKG-LKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSL 161 (347)
T ss_pred hcCHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 334688 9999999999998888877765554443
No 70
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=29.29 E-value=1.2e+02 Score=23.35 Aligned_cols=24 Identities=17% Similarity=0.640 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhhCC
Q psy7467 169 LWVFIILMSLFLMTIYPEFIAPLFDK 194 (295)
Q Consensus 169 ~w~~~~~~~l~l~~iyP~lI~PLFnk 194 (295)
+.++.+.+.+.+....|.+ |.|||
T Consensus 38 ~~~~~~g~~~~~lv~vP~W--p~y~r 61 (76)
T PF06645_consen 38 FYIYGAGVVLTLLVVVPPW--PFYNR 61 (76)
T ss_pred HHHHHHHHHHHHhheeCCc--HhhcC
Confidence 3334444444445667766 78874
No 71
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=28.37 E-value=54 Score=25.13 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhCCCCCCcEEE
Q psy7467 202 ELKSRIEQLSASVKFPLKKLYV 223 (295)
Q Consensus 202 eLr~~Ie~La~r~GFp~~~I~V 223 (295)
+=.+.|.+.++++|+|.++|.-
T Consensus 55 p~~eaV~~~~~~aG~p~d~I~e 76 (77)
T PF14026_consen 55 PDEEAVREHARRAGLPADRITE 76 (77)
T ss_pred CCHHHHHHHHHHcCCCcceEEE
Confidence 4467899999999999998864
No 72
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=27.46 E-value=1.3e+02 Score=25.86 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 133 VKDQIKSFIVSLILSIPLTGAVVYII 158 (295)
Q Consensus 133 l~D~lK~~lL~~vl~~pl~~~~~~ii 158 (295)
.++..|+.+...+...++...+.+.+
T Consensus 86 ~~~~mK~~~~~~v~~i~i~~wi~~~f 111 (168)
T PF01956_consen 86 MMMMMKPMFVTMVPQIPIFYWINYFF 111 (168)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 67777777777666665554444433
No 73
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=26.73 E-value=1e+02 Score=25.35 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhc
Q psy7467 59 GIIGFSWIVFLFEFYLSIRQRRVYHET 85 (295)
Q Consensus 59 ~il~~~~~~~l~e~yL~~RQ~r~~~~~ 85 (295)
.++++.++.++...++.+.|.|.+++.
T Consensus 3 ~lii~~~~~~~lQ~~l~~~Qik~f~~~ 29 (109)
T PF06923_consen 3 ILIILLVIAWLLQILLGWFQIKNFNKA 29 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788889999999999988753
No 74
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=26.70 E-value=3.3e+02 Score=21.74 Aligned_cols=9 Identities=56% Similarity=0.685 Sum_probs=4.3
Q ss_pred hHHHHHHHH
Q psy7467 202 ELKSRIEQL 210 (295)
Q Consensus 202 eLr~~Ie~L 210 (295)
|+++.++.+
T Consensus 110 ~l~~d~~~l 118 (121)
T PF07332_consen 110 ELKEDIAAL 118 (121)
T ss_pred HHHHHHHHh
Confidence 455554443
No 75
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.23 E-value=3.8e+02 Score=22.28 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhhhHhhhhCCCccCCCchHHHHH
Q psy7467 128 TYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRI 207 (295)
Q Consensus 128 T~~~fl~D~lK~~lL~~vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l~~iyP~lI~PLFnkftPLedgeLr~~I 207 (295)
|-..+..--..+++.+++++.|+. ++. + .|..+...+++..++..++-+.+++.+= +=+ ||+=|.+++
T Consensus 19 T~~El~~~~~~~~~~gl~~g~~l~----~~~---~--~w~~~p~~~lig~~l~v~~gg~~l~rlK-RGr--Pe~yl~r~l 86 (111)
T TIGR03750 19 TADELGVAAGVGLAAGLVLGLLLA----LLA---G--PWALIPTGALLGPILVVLIGGKLLARLK-RGK--PEGYLYRKL 86 (111)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----HHH---H--HHHHHHHHHHHHHHHHHHHhHHHHHHHH-cCC--CchHHHHHH
Confidence 333333344445555555555542 221 2 2333333444444455667777776553 223 588899999
Q ss_pred HHHHHhCCCC
Q psy7467 208 EQLSASVKFP 217 (295)
Q Consensus 208 e~La~r~GFp 217 (295)
+..+++.|+.
T Consensus 87 ~~~~~~~~l~ 96 (111)
T TIGR03750 87 EWKLARLGLG 96 (111)
T ss_pred HHHHHHcCCC
Confidence 9999999864
No 76
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=26.01 E-value=2.1e+02 Score=25.18 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=8.4
Q ss_pred hhH-HHHHHHHHHHHHH
Q psy7467 163 NMV-FLYLWVFIILMSL 178 (295)
Q Consensus 163 ~~~-wl~~w~~~~~~~l 178 (295)
+++ |.++|++.+.|.+
T Consensus 57 py~G~~s~~~ftv~fv~ 73 (155)
T PF10777_consen 57 PYFGLGSVWGFTVFFVV 73 (155)
T ss_pred chhhhHHHHHHHHHHHH
Confidence 444 5556666555443
No 77
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=25.90 E-value=77 Score=22.02 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=23.3
Q ss_pred hhhHhhhhCCCccCCCchHHHHHHHHHHhCCCCC
Q psy7467 185 PEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPL 218 (295)
Q Consensus 185 P~lI~PLFnkftPLedgeLr~~Ie~La~r~GFp~ 218 (295)
+.-+...+|.-..+ .++.+++|.+.+++.||.+
T Consensus 13 ~~TVSr~ln~~~~v-s~~tr~rI~~~a~~lgY~p 45 (46)
T PF00356_consen 13 KSTVSRVLNGPPRV-SEETRERILEAAEELGYRP 45 (46)
T ss_dssp HHHHHHHHTTCSSS-THHHHHHHHHHHHHHTB-S
T ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHHCCCC
Confidence 33445566654334 4689999999999999975
No 78
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=25.76 E-value=4.1e+02 Score=22.42 Aligned_cols=7 Identities=0% Similarity=-0.078 Sum_probs=2.8
Q ss_pred CHHHHHH
Q psy7467 97 DAESFEK 103 (295)
Q Consensus 97 s~e~f~K 103 (295)
+..++-+
T Consensus 74 sr~~iV~ 80 (206)
T PF13346_consen 74 SRKEIVL 80 (206)
T ss_pred CHHHHHH
Confidence 3444433
No 79
>PHA02902 putative IMV membrane protein; Provisional
Probab=25.65 E-value=1.5e+02 Score=22.69 Aligned_cols=43 Identities=9% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHh---hcCCCC-------chhccCCCHHHHH
Q psy7467 60 IIGFSWIVFLFEFYLSIRQRRVYH---ETTIVP-------HQIAHGMDAESFE 102 (295)
Q Consensus 60 il~~~~~~~l~e~yL~~RQ~r~~~---~~~~vP-------~~l~~~~s~e~f~ 102 (295)
++++.++.+..-.|..+|..|-.. ++.+.+ +.|++.+++++.+
T Consensus 8 i~~v~v~Ivclliya~YrR~kci~sP~~~d~~~~~~l~~d~~F~D~lTpDQir 60 (70)
T PHA02902 8 ILAVIVIIFCLLIYAAYKRYKCIPSPDDRDERFGDTLEDDPLFKDSLTPDQIK 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCCchhhccCCHHHHH
Confidence 344444444555577777765444 222222 3566778887764
No 80
>PRK06298 type III secretion system protein; Validated
Probab=25.37 E-value=6.7e+02 Score=24.79 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=27.3
Q ss_pred hHHhHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 113 VFSMFKETVSNVMN-TTYGFFVKDQIKSFIVSLILSIPLTGA 153 (295)
Q Consensus 113 ~f~~~~~l~~~iFN-~T~~~fl~D~lK~~lL~~vl~~pl~~~ 153 (295)
+++.+++ +..+|+ +++-.+++..+|..+++.+....+-..
T Consensus 121 rlNP~~G-~KriFS~~~lvel~KsllK~~~~~~v~~~~~~~~ 161 (356)
T PRK06298 121 KFNPIDN-LKQKFKVKTLIELLKSILKISGAALILYIVLKNR 161 (356)
T ss_pred hcCHhhh-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544 334688 888889999999888877766555433
No 81
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=24.60 E-value=2.2e+02 Score=28.18 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=19.8
Q ss_pred CCchHHHHHHHHHHhCCCCCCcEEEEeCC
Q psy7467 199 PDGELKSRIEQLSASVKFPLKKLYVVEGS 227 (295)
Q Consensus 199 edgeLr~~Ie~La~r~GFp~~~I~V~d~S 227 (295)
|+..+.+.|+.+.+. ..|.-+|+++|.+
T Consensus 86 E~~~i~~~l~sll~q-~yp~~eIivVdDg 113 (444)
T PRK14583 86 EGLNARETIHAALAQ-TYTNIEVIAINDG 113 (444)
T ss_pred CHHHHHHHHHHHHcC-CCCCeEEEEEECC
Confidence 445688888887654 6776678888744
No 82
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=24.15 E-value=3.3e+02 Score=21.07 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=19.6
Q ss_pred CCchHHHHH----HHHHHhCCCCCC---cEEEEeC
Q psy7467 199 PDGELKSRI----EQLSASVKFPLK---KLYVVEG 226 (295)
Q Consensus 199 edgeLr~~I----e~La~r~GFp~~---~I~V~d~ 226 (295)
.|++.|+++ .+.+++.|+..+ +|.|++.
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~ 49 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEE 49 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEc
Confidence 467777777 555667798864 5788884
No 83
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=24.14 E-value=1.2e+02 Score=25.53 Aligned_cols=47 Identities=6% Similarity=0.137 Sum_probs=37.0
Q ss_pred hCCCccCCCchHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCccEEEe
Q psy7467 192 FDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSEHSNAYFY 238 (295)
Q Consensus 192 FnkftPLedgeLr~~Ie~La~r~GFp~~~I~V~d~SkrS~hsNAyf~ 238 (295)
++.=++.-..+++.-|+.++++...+-..|+||.|+--....|.|..
T Consensus 3 ~g~~t~~~~~~i~~pl~~Iar~~s~~~~~I~IlSGtHG~~~G~nw~~ 49 (119)
T PF15656_consen 3 WGSDTKINGYDINAPLETIARRPSGDNGDIHILSGTHGYCSGQNWLS 49 (119)
T ss_pred eccCCeecchhhHHHHHHHHhCcCCCCCCEEEEeCCCCCccccchhh
Confidence 45556777778999999999999999999999999765555544443
No 84
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=24.02 E-value=2.7e+02 Score=26.55 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q psy7467 145 ILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFL 180 (295)
Q Consensus 145 vl~~pl~~~~~~ii~~~G~~~wl~~w~~~~~~~l~l 180 (295)
++++.++.+-+...+..|-.++.|+.++++++.++.
T Consensus 210 iiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~ 245 (256)
T PF09788_consen 210 IIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLI 245 (256)
T ss_pred HHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHH
Confidence 334444444455555555556666666555544443
No 85
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=23.46 E-value=14 Score=23.98 Aligned_cols=7 Identities=71% Similarity=2.209 Sum_probs=5.6
Q ss_pred ccccccc
Q psy7467 21 AEVCGCW 27 (295)
Q Consensus 21 ~~~~~~~ 27 (295)
+-.||||
T Consensus 27 ~licgcw 33 (33)
T PF09049_consen 27 ALICGCW 33 (33)
T ss_dssp HHHHHHH
T ss_pred hhheecC
Confidence 4579999
No 86
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=23.39 E-value=71 Score=20.29 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=11.7
Q ss_pred ccCCCHHHHHHHHH
Q psy7467 93 AHGMDAESFEKSRR 106 (295)
Q Consensus 93 ~~~~s~e~f~Ks~~ 106 (295)
++.+|+|+|++.++
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 46899999998775
No 87
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=22.87 E-value=3.6e+02 Score=22.66 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=35.7
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cChhHHHHHHHHH-HHHHHHHHHHhhh
Q psy7467 125 MNTTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQV------GGNMVFLYLWVFI-ILMSLFLMTIYPE 186 (295)
Q Consensus 125 FN~T~~~fl~D~lK~~lL~~vl~~pl~~~~~~ii~~------~G~~~wl~~w~~~-~~~~l~l~~iyP~ 186 (295)
+|...+..+.|-+.+..++...+..++.+++.+.+. .+..||.|...+. +.+.....+..|.
T Consensus 19 ~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~~vp~ 87 (138)
T PF04657_consen 19 FNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNIILVPR 87 (138)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHHHhhh
Confidence 665555556666777777777777777766666554 1234666654333 3333334444454
No 88
>PF14007 YtpI: YtpI-like protein
Probab=22.66 E-value=2.2e+02 Score=22.79 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy7467 42 WAVNLKMEFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHE 84 (295)
Q Consensus 42 ~~~~~~~~~~~p~~~~~~il~~~~~~~l~e~yL~~RQ~r~~~~ 84 (295)
.++|-+.- .+..+..++.++.++.-++..+..+|++|+++.
T Consensus 46 fgiNQ~~~--~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 46 FGINQMFL--FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHHHHHHH--cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 45666665 555667777788888889999999999998864
No 89
>PRK09108 type III secretion system protein HrcU; Validated
Probab=22.58 E-value=7.5e+02 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=28.4
Q ss_pred hHHhHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 113 VFSMFKETVSNVMN-TTYGFFVKDQIKSFIVSLILSIPLTGAV 154 (295)
Q Consensus 113 ~f~~~~~l~~~iFN-~T~~~fl~D~lK~~lL~~vl~~pl~~~~ 154 (295)
+++.++++ ..+|+ +++-.+++..+|..+++.+....+-...
T Consensus 122 rlNP~~gl-KriFS~~~l~el~KsllK~~~~~~v~~~~~~~~~ 163 (353)
T PRK09108 122 ALNPAAGL-KKIFSLRSLIELVKMIVKAVVIAAVLWKGITSLM 163 (353)
T ss_pred hcCHhHhH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 34688 8888899999998888777766554433
No 90
>PRK05423 hypothetical protein; Provisional
Probab=22.49 E-value=12 Score=30.45 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=23.4
Q ss_pred CCcEEEEehhhhhhhcCCCcccCCCCCCCCcccccccccCCCCChhhhhhcccC
Q psy7467 242 KNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAVLAH 295 (295)
Q Consensus 242 ~~KrIVL~DTLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~EIlAVLAH 295 (295)
..|||.|-|+|.+- -.+ |++.+||.+++++
T Consensus 38 NqKRVlLLdNL~~Y-Ik~-----------------------~Ms~e~i~~II~n 67 (104)
T PRK05423 38 NQKRVLLLDNLSDY-IKP-----------------------GMSIEEIQGIIAN 67 (104)
T ss_pred hHHHHHHHHHHHHH-cCC-----------------------CCCHHHHHHHHHH
Confidence 56999999999984 222 3999999998863
No 91
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=21.77 E-value=97 Score=22.53 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy7467 164 MVFLYLWVFIILMSLFLM 181 (295)
Q Consensus 164 ~~wl~~w~~~~~~~l~l~ 181 (295)
-||+|+.+..++|+..|.
T Consensus 2 PwWvY~vi~gI~~S~ym~ 19 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMA 19 (52)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 378998888888777653
No 92
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=21.74 E-value=7.7e+02 Score=26.13 Aligned_cols=28 Identities=18% Similarity=0.053 Sum_probs=20.8
Q ss_pred hc-CChHHHHHHHHHHHHHHHHHHHHHHH
Q psy7467 125 MN-TTYGFFVKDQIKSFIVSLILSIPLTG 152 (295)
Q Consensus 125 FN-~T~~~fl~D~lK~~lL~~vl~~pl~~ 152 (295)
|+ +++-.+++..+|..+++.+....+..
T Consensus 394 FS~k~l~el~K~l~K~~~i~~~~~~~~~~ 422 (609)
T PRK12772 394 FSMRSVMELLKDLTIITIVGIVGYKFLQD 422 (609)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 88888899999988877766555443
No 93
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=21.64 E-value=3e+02 Score=23.50 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhh
Q psy7467 170 WVFIILMSLFLMTIYPEFIAPLF 192 (295)
Q Consensus 170 w~~~~~~~l~l~~iyP~lI~PLF 192 (295)
..+.++.+++...+-..+|.|..
T Consensus 34 l~~sl~ltvvaY~iGDl~ILPr~ 56 (136)
T PF10710_consen 34 LLISLVLTVVAYLIGDLFILPRT 56 (136)
T ss_pred HHHHHHHHHHHHHHHHHheeeCC
Confidence 33334444444444444444433
No 94
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.36 E-value=3.9e+02 Score=20.67 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7467 55 QIFYGIIGFSWIVFLFEFYLSIRQR 79 (295)
Q Consensus 55 ~~~~~il~~~~~~~l~e~yL~~RQ~ 79 (295)
.+...++++++++...-.+|.+|..
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555556676753
No 95
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=20.64 E-value=1e+02 Score=28.47 Aligned_cols=19 Identities=16% Similarity=0.752 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7467 165 VFLYLWVFIILMSLFLMTI 183 (295)
Q Consensus 165 ~wl~~w~~~~~~~l~l~~i 183 (295)
||.|+.++++++.++++++
T Consensus 228 ~~~~~~i~~v~~~Fi~mvl 246 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMVL 246 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777666655555544443
Done!