RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7467
         (295 letters)



>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux
           transporter AcrB transmembrane domain {Escherichia coli
           [TaxId: 562]}
          Length = 222

 Score = 26.6 bits (58), Expect = 3.1
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 129 YGFFVKDQIKSFIVSLILSIPLTGAVVYI--------IQVGGNMVFLYLWVFIILMSLFL 180
           Y   V   ++S    L+L + +   + Y+        +   GN       + +I++ L L
Sbjct: 15  YTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDSGNQAPSLYAISLIVVFLCL 74

Query: 181 MTIYPEFIAPL 191
             +Y  +  P 
Sbjct: 75  AALYESWSIPF 85


>d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal
           xylanase z {Clostridium thermocellum [TaxId: 1515]}
          Length = 255

 Score = 25.4 bits (54), Expect = 8.0
 Identities = 7/52 (13%), Positives = 11/52 (21%)

Query: 56  IFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRY 107
            F  I   S     +                +    IA G +       +R 
Sbjct: 159 KFAYIGPISAAPNTYPNERLFPDGGKAAREKLKLLFIACGTNDSLIGFGQRV 210


>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 439

 Score = 25.2 bits (55), Expect = 9.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 86  TIVPHQIAHGMDAESFEKSRR 106
           ++      HG DA+ FEK+ +
Sbjct: 362 SLHSTMTPHGPDADCFEKASK 382


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,103,095
Number of extensions: 51666
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 10
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.2 bits)