BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy747
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 181/426 (42%), Gaps = 77/426 (18%)
Query: 6 AQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----HVIDLT 60
++Y D C PI K+ C+ R CP P Q + +T
Sbjct: 129 CEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLAREQINAVT 184
Query: 61 HFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCD-IQP 112
FLD S VYGS R ++ H G Y P + S C+ I
Sbjct: 185 SFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDH--GLAYLPFNNKKPSPCEFINT 242
Query: 113 DEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIG 172
C+ AGD RA++ L L LR HN LARE K+N HW+ E+LYQEARK +
Sbjct: 243 TARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGA 302
Query: 173 IYQWITYEEMLPVLI--DITYMMIAKSGKAAQID-----MVTWMHR------PSIVQ--- 216
Q IT+ + LP+++ ++ + G +D + T+ R PS V
Sbjct: 303 FIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLD 362
Query: 217 ---------------------------GYLDHLLEG---QQTQFIQPFEDWWEDFNINNK 246
G +D L+ G ++++ + +D + ++
Sbjct: 363 ENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMN------QDKMVTSE 416
Query: 247 LKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI 306
L+ + HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + +
Sbjct: 417 LRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKIL 476
Query: 307 --HLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGK 364
L+ L YK D+ID+++GG E + GP ++ QF + + GDRFW+
Sbjct: 477 AKKLMDL-YKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---N 532
Query: 365 PWSFTE 370
P FTE
Sbjct: 533 PGVFTE 538
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 180/424 (42%), Gaps = 73/424 (17%)
Query: 6 AQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----HVIDLT 60
++Y D C PI K+ C+ R CP P Q + +T
Sbjct: 129 CEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLAREQINAVT 184
Query: 61 HFLDVSPVYGSTRKIA---EXXXXXXXXXXXXQHV--GGKEYPPNYGRPKSKCD-IQPDE 114
FLD S VYGS +A + Q G Y P R S C+ I
Sbjct: 185 SFLDASLVYGSEPSLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRKPSPCEFINTTA 244
Query: 115 PAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIY 174
C+ AGD RA++ L L LR HN LARE K+N WD E+LYQEARK +
Sbjct: 245 RVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWDGEKLYQEARKILGAFV 304
Query: 175 QWITYEEMLPVLI--DITYMMIAKSGKAAQID-----MVTWMHR------PSIVQ----- 216
Q IT+ + LP+++ ++ + G +D + T+ R PS V
Sbjct: 305 QIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDEN 364
Query: 217 -------------------------GYLDHLLEG---QQTQFIQPFEDWWEDFNINNKLK 248
G +D L+ G ++++ + +D + ++L+
Sbjct: 365 YQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMN------QDKMVTSELR 418
Query: 249 TNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI-- 306
+ HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + +
Sbjct: 419 NKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAK 478
Query: 307 HLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPW 366
L+ L YK D+ID+++GG E + GP ++ QF + + GDRFW+ P
Sbjct: 479 KLMDL-YKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPG 534
Query: 367 SFTE 370
FTE
Sbjct: 535 VFTE 538
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 181/426 (42%), Gaps = 77/426 (18%)
Query: 6 AQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----HVIDLT 60
++Y D C PI K+ C+ R CP P Q + +T
Sbjct: 129 CEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLAREQINAVT 184
Query: 61 HFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCD-IQP 112
FLD S VYGS R ++ H G Y P + S C+ I
Sbjct: 185 SFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDH--GLAYLPFNNKKPSPCEFINT 242
Query: 113 DEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIG 172
C+ AGD RA++ L L LR HN LARE K+N HW+ E+LYQEARK +
Sbjct: 243 TARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGA 302
Query: 173 IYQWITYEEMLPVLI--DITYMMIAKSGKAAQID-----MVTWMHR------PSIVQ--- 216
Q IT+ + LP+++ ++ + G +D + T+ R PS V
Sbjct: 303 FIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLD 362
Query: 217 ---------------------------GYLDHLLEG---QQTQFIQPFEDWWEDFNINNK 246
G +D L+ G ++++ + +D + ++
Sbjct: 363 ENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMN------QDKMVTSE 416
Query: 247 LKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI 306
L+ + HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + +
Sbjct: 417 LRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKIL 476
Query: 307 --HLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGK 364
L+ L YK D+ID+++GG E + GP ++ QF + + GDRFW+
Sbjct: 477 AKKLMDL-YKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---N 532
Query: 365 PWSFTE 370
P FTE
Sbjct: 533 PGVFTE 538
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 181/426 (42%), Gaps = 77/426 (18%)
Query: 6 AQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----HVIDLT 60
++Y D C PI K+ C+ R CP P Q + +T
Sbjct: 117 CEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLAREQINAVT 172
Query: 61 HFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCD-IQP 112
FLD S VYGS R ++ H G Y P + S C+ I
Sbjct: 173 SFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDH--GLAYLPFNNKKPSPCEFINT 230
Query: 113 DEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIG 172
C+ AGD RA++ L L LR HN LARE K+N HW+ E+LYQEARK +
Sbjct: 231 TARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGA 290
Query: 173 IYQWITYEEMLPVLI--DITYMMIAKSGKAAQID-----MVTWMHR------PSIVQ--- 216
Q IT+ + LP+++ ++ + G +D + T+ R PS V
Sbjct: 291 FIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLD 350
Query: 217 ---------------------------GYLDHLLEG---QQTQFIQPFEDWWEDFNINNK 246
G +D L+ G ++++ + +D + ++
Sbjct: 351 ENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMN------QDKMVTSE 404
Query: 247 LKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI 306
L+ + HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + +
Sbjct: 405 LRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKIL 464
Query: 307 --HLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGK 364
L+ L YK D+ID+++GG E + GP ++ QF + + GDRFW+
Sbjct: 465 AKKLMDL-YKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---N 520
Query: 365 PWSFTE 370
P FTE
Sbjct: 521 PGVFTE 526
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 180/424 (42%), Gaps = 73/424 (17%)
Query: 6 AQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----HVIDLT 60
++Y D C PI K+ C+ R CP P Q + +T
Sbjct: 129 CEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLAREQINAVT 184
Query: 61 HFLDVSPVYGSTRKIA---EXXXXXXXXXXXXQHV--GGKEYPPNYGRPKSKCD-IQPDE 114
FLD S VYGS +A + Q G Y P R S C+ I
Sbjct: 185 SFLDASLVYGSEPXLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRKPSPCEFINTTA 244
Query: 115 PAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIY 174
C+ AGD RA++ L L LR HN LARE K+N WD E+LYQEARK +
Sbjct: 245 RVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWDGEKLYQEARKILGAFV 304
Query: 175 QWITYEEMLPVLI--DITYMMIAKSGKAAQID-----MVTWMHR------PSIVQ----- 216
Q IT+ + LP+++ ++ + G +D + T+ R PS V
Sbjct: 305 QIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDEN 364
Query: 217 -------------------------GYLDHLLEG---QQTQFIQPFEDWWEDFNINNKLK 248
G +D L+ G ++++ + +D + ++L+
Sbjct: 365 YQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMN------QDKMVTSELR 418
Query: 249 TNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI-- 306
+ HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + +
Sbjct: 419 NKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAK 478
Query: 307 HLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPW 366
L+ L YK D+ID+++GG E + GP ++ QF + + GDRFW+ P
Sbjct: 479 KLMDL-YKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPG 534
Query: 367 SFTE 370
FTE
Sbjct: 535 VFTE 538
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 156/414 (37%), Gaps = 86/414 (20%)
Query: 16 CLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPI---QHVIDLTHFLDVSPVYGST 72
C P+ I + + CI R CP S I + LT F+D S VYGS
Sbjct: 13 CFPLKIPPNDPRIKNQADCIPFFRSXP----ACPGSNITIRNQINALTSFVDASMVYGSE 68
Query: 73 RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAV---------CYFAGD 123
+A + + + GR D D+P + C+ AGD
Sbjct: 69 EPLARNLRNMSNQLGL---LAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGD 125
Query: 124 SRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEML 183
+R+++ LT + L LR HN LA E +N WD ERLYQEARK V + Q ITY + L
Sbjct: 126 TRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYL 185
Query: 184 PVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNI 243
P+++ T M + D V P I + + G IQPF F +
Sbjct: 186 PLVLGPTAMRKYLPTYRSYNDSVD----PRIANVFTNAFRYGH--TLIQPFM-----FRL 234
Query: 244 NNKLKTNHP----PFQ--------------YDP--HGDDLTAIGIQRQRDYG-------- 275
+N+ + P P DP G T + RQ
Sbjct: 235 DNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERL 294
Query: 276 ----------MPGYN-------------EFRKYAGLKPVKSFEELSDVIGPENIHL---L 309
+P N +R++ GL ++ +L V+ N+ L L
Sbjct: 295 FEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--RNLKLARKL 352
Query: 310 KLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLG 363
Y ++ID+++GG E GP +I QF + + GDRFW+ G
Sbjct: 353 MEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEG 406
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 156/414 (37%), Gaps = 86/414 (20%)
Query: 16 CLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPI---QHVIDLTHFLDVSPVYGST 72
C P+ I + + CI R CP S I + LT F+D S VYGS
Sbjct: 13 CFPLKIPPNDPRIKNQADCIPFFRSCP----ACPGSNITIRNQINALTSFVDASMVYGSE 68
Query: 73 RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAV---------CYFAGD 123
+A + + + GR D D+P + C+ AGD
Sbjct: 69 EPLARNLRNMSNQLGL---LAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGD 125
Query: 124 SRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEML 183
+R+++ LT + L LR HN LA E +N WD ERLYQEARK V + Q ITY + L
Sbjct: 126 TRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYL 185
Query: 184 PVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNI 243
P+++ T M + D V P I + + G IQPF F +
Sbjct: 186 PLVLGPTAMRKYLPTYRSYNDSVD----PRIANVFTNAFRYGH--TLIQPFM-----FRL 234
Query: 244 NNKLKTNHP----PFQ--------------YDP--HGDDLTAIGIQRQRDYG-------- 275
+N+ + P P DP G T + RQ
Sbjct: 235 DNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERL 294
Query: 276 ----------MPGYN-------------EFRKYAGLKPVKSFEELSDVIGPENIHL---L 309
+P N +R++ GL ++ +L V+ N+ L L
Sbjct: 295 FEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--RNLKLARKL 352
Query: 310 KLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLG 363
Y ++ID+++GG E GP +I QF + + GDRFW+ G
Sbjct: 353 MEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEG 406
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 156/414 (37%), Gaps = 86/414 (20%)
Query: 16 CLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPI---QHVIDLTHFLDVSPVYGST 72
C P+ I + + CI R CP S I + LT F+D S VYGS
Sbjct: 13 CFPLKIPPNDPRIKNQADCIPFFRSXP----ACPGSNITIRNQINALTSFVDASMVYGSE 68
Query: 73 RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAV---------CYFAGD 123
+A + + + GR D D+P + C+ AGD
Sbjct: 69 EPLARNLRNMSNQLGL---LAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGD 125
Query: 124 SRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEML 183
+R+++ LT + L LR HN LA E +N WD ERLYQEARK V + Q ITY + L
Sbjct: 126 TRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYL 185
Query: 184 PVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNI 243
P+++ T M + D V P I + + G IQPF F +
Sbjct: 186 PLVLGPTAMRKYLPTYRSYNDSVD----PRIANVFTNAFRYGH--TLIQPFM-----FRL 234
Query: 244 NNKLKTNHP----PFQ--------------YDP--HGDDLTAIGIQRQRDYG-------- 275
+N+ + P P DP G T + RQ
Sbjct: 235 DNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERL 294
Query: 276 ----------MPGYN-------------EFRKYAGLKPVKSFEELSDVIGPENIHL---L 309
+P N +R++ GL ++ +L V+ N+ L L
Sbjct: 295 FEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--RNLKLARKL 352
Query: 310 KLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLG 363
Y ++ID+++GG E GP +I QF + + GDRFW+ G
Sbjct: 353 MEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEG 406
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 1 KLDCCAQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----H 55
K+ C ++Y D C PI K+ C+ R CP P Q
Sbjct: 126 KVQC--EEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLARDQ 179
Query: 56 VIDLTHFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKC 108
+ +T FLD S VYGS R ++ H G YPP S C
Sbjct: 180 INSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDH--GLAYPPFNNMKPSPC 237
Query: 109 D-IQPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEAR 167
+ I C+ AGDSRA++ L + L LR HN LARE ++N HWD E+LYQEAR
Sbjct: 238 EFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEKLYQEAR 297
Query: 168 KTVIGIYQWITYEEMLPVLI 187
K + Q IT+ + LP+++
Sbjct: 298 KILGAFIQIITFRDYLPIVL 317
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 259 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 316
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + LL L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDL-YKTP 487
Query: 317 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 370
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 1 KLDCCAQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----H 55
K+ C ++Y D C PI K+ C+ R CP P Q
Sbjct: 126 KVQC--EEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLARDQ 179
Query: 56 VIDLTHFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKC 108
+ +T FLD S VYGS R ++ H G YPP S C
Sbjct: 180 INSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDH--GLAYPPFNNMKPSPC 237
Query: 109 D-IQPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEAR 167
+ I C+ AGDSRA++ L + L LR HN LARE ++N HWD E+LYQEAR
Sbjct: 238 EFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEKLYQEAR 297
Query: 168 KTVIGIYQWITYEEMLPVLI 187
K + Q IT+ + LP+++
Sbjct: 298 KILGAFIQIITFRDYLPIVL 317
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 259 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 316
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + LL L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDL-YKTP 487
Query: 317 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 370
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 1 KLDCCAQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----H 55
K+ C ++Y D C PI K+ C+ R CP P Q
Sbjct: 126 KVQC--EEYCVQGDECFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLARDQ 179
Query: 56 VIDLTHFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKC 108
+ +T FLD S VYGS R ++ H G YPP S C
Sbjct: 180 INAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDH--GLAYPPFNNVKPSPC 237
Query: 109 D-IQPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEAR 167
+ I C+ AGDSRA++ L + L LR HN LARE ++N HWD E LYQEAR
Sbjct: 238 EFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLYQEAR 297
Query: 168 KTVIGIYQWITYEEMLPVLI 187
K + Q IT+ + LP+++
Sbjct: 298 KILGAFIQIITFRDYLPIVL 317
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 259 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 316
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + LL L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDL-YKTP 487
Query: 317 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 370
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 1 KLDCCAQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----H 55
K+ C ++Y D C PI K+ C+ R CP P Q
Sbjct: 126 KVQC--EEYCVQGDECFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLARDQ 179
Query: 56 VIDLTHFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKC 108
+ +T FLD S VYGS R ++ H G YPP S C
Sbjct: 180 INAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDH--GLAYPPFNNVKPSPC 237
Query: 109 D-IQPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEAR 167
+ I C+ AGDSRA++ L + L LR HN LARE ++N HWD E LYQEAR
Sbjct: 238 EFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLYQEAR 297
Query: 168 KTVIGIYQWITYEEMLPVLI 187
K + Q IT+ + LP+++
Sbjct: 298 KILGAFIQIITFRDYLPIVL 317
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 259 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 316
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + LL L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDL-YKTP 487
Query: 317 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 370
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 6 AQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----HVIDLT 60
++Y D C PI K+ C+ R CP P Q + +T
Sbjct: 117 CEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLAREQINAVT 172
Query: 61 HFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCD-IQP 112
FLD S VYGS R ++ H G Y P + S C+ I
Sbjct: 173 SFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDH--GLAYLPFNNKKPSPCEFINT 230
Query: 113 DEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIG 172
C+ AGD RA++ L L LR HN LARE K+N HW+ E+LYQEARK +
Sbjct: 231 TARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGA 290
Query: 173 IYQWITYEEMLPVLI 187
Q IT+ + LP+++
Sbjct: 291 FIQIITFRDYLPIVL 305
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 259 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 316
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 417 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 475
Query: 317 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 370
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 476 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 526
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 6 AQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQ-----HVIDLT 60
++Y D C PI K+ C+ R CP P Q + +T
Sbjct: 129 CEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRA----GFVCPTPPYQSLAREQINAVT 184
Query: 61 HFLDVSPVYGST-------RKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCD-IQP 112
FLD S VYGS R ++ H G Y P + S C+ I
Sbjct: 185 SFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDH--GLAYLPFNNKKPSPCEFINT 242
Query: 113 DEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIG 172
C+ AGD RA++ L L LR HN LARE K+N HW+ E+LYQEARK +
Sbjct: 243 TARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGA 302
Query: 173 IYQWITYEEMLPVLI 187
Q IT+ + LP+++
Sbjct: 303 FIQIITFRDYLPIVL 317
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 259 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 316
HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L+ L YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDL-YKTP 487
Query: 317 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 370
D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 124/339 (36%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 193 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 252
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
FA G L ++LR HN + + + W DE+L+Q +R +IG I
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 312
Query: 178 TYEEMLPVLI----------DITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQ 227
E+ + L ++ + + + T H ++ + +E Q+
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFN--IEDQE 370
Query: 228 TQFIQPFEDWWEDFNINNKLKTNHPPFQYDPH----------GDDLTAIGIQ-------- 269
F Q F NN + H Q+ G I +Q
Sbjct: 371 YSFKQ--------FLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASID 422
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 423 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 480
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 481 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 252 PPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKL 311
P Q P DL A+ I R R+ +P YNEFR+ + P+ +E+L++ E I +L
Sbjct: 480 PNGQARPDHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTE--DEEAIEVLDD 537
Query: 312 GYK-HVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFS 360
Y V+++DL VG E + T Y+ R DRF+ S
Sbjct: 538 VYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTS 587
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 119/339 (35%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 197 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 256
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 257 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 316
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 317 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 376
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 377 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 426
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 427 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 484
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A ++ G+ KP +F
Sbjct: 485 PRPDAIFGETMVELGAPFSFKGLMGNPICSPQYWKPSTF 523
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 193 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 252
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 312
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 372
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 373 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 422
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 423 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 480
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 481 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 198 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 257
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 258 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 317
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 318 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 377
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 378 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 427
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 428 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 485
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 486 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 524
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 197 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 256
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 257 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 316
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 317 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 376
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 377 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 426
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 427 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 484
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 485 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 523
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 210 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 269
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 270 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 329
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 330 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 389
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F + + P + I
Sbjct: 390 FKQFLYNNSI--LLEHGLTQFVESFTRQIAGRVAGGR----NVPIAVQA----VAKASID 439
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 440 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 497
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 498 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 536
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 216 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 275
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 276 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 335
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 336 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 395
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 396 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 445
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 446 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 503
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 504 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 542
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 193 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 252
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 312
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 372
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 373 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 422
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 423 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 480
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 481 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 199 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 258
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 259 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 318
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 319 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 378
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 379 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 428
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 429 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 486
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 487 PRPDAIFGETMVELGAPFSLKVLMGNPICSPQYWKPSTF 525
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 198 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 257
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR HN + + + W DE+L+Q E K
Sbjct: 258 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 317
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 318 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 377
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 378 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 427
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 428 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 485
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 486 PHPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 524
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 117/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 193 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 252
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR H + + + W DE+L+Q E K
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKI 312
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 372
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 373 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 422
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 423 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 480
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 481 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 117/339 (34%), Gaps = 41/339 (12%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D++ +YG T Q +GG+ YPP + + P P
Sbjct: 193 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 252
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQ--------EARKT 169
FA G L ++LR H + + + W DE+L+Q E K
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKI 312
Query: 170 VIGIY--------------------QWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWM 209
VI Y Q Y+ + + Y I+ +
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYS 372
Query: 210 HRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQ 269
+ + + LLE TQF++ F I ++ + I
Sbjct: 373 FKQFLYNNSI--LLEHGLTQFVESFTR-----QIAGRVAGGR---NVPIAVQAVAKASID 422
Query: 270 RQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLEN 329
+ R+ NE+RK LKP SFEEL+ E LK Y +D ++L+ +E
Sbjct: 423 QSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEK 480
Query: 330 PLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSF 368
P D++FG T + A + G+ KP +F
Sbjct: 481 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 519
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 193 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 252
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 253 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 312
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 313 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 371
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 372 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 431
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 432 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 488
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 193 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 252
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 253 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 312
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 313 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 371
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 372 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 431
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 432 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 488
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 192 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 251
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 252 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 311
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 312 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 370
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 371 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 430
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 431 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 487
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 193 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 252
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 253 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 312
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 313 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 371
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 372 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 431
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 432 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 488
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 192 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 251
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 252 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 311
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 312 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 370
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 371 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 430
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 431 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 487
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 204 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 263
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 264 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 323
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 324 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 382
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 383 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 442
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 443 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 499
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 200 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 259
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 260 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 319
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 320 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 378
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 379 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 438
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 439 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 495
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 200 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 259
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 260 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 319
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 320 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 378
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 379 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 438
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 439 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 495
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 59 LTHFLDVSPVYGSTRKIAEXXXXXXXXXXXXQHVGGKEYPPNYGRPKSKCDIQPDEPAVC 118
L H +D+ +YG + Q + G+ YPP+ P
Sbjct: 224 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 283
Query: 119 YFA-GDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
A G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 284 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 343
Query: 178 TYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFED 236
EE + L ++ + + + +R ++ L H F + P +
Sbjct: 344 VIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDY 402
Query: 237 WWEDFNINNKLKTNHP------PFQYDPHGD------------DLTAIGIQRQRDYGMPG 278
+E F N + ++ F P G + I+ R +
Sbjct: 403 SYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 462
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 463 FNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 519
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 137 VLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEMLPVLIDITYMMIAK 196
++LR HN + + W DE+L+Q AR +IG I EE L ++ +
Sbjct: 303 TIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQLSGY-FLQLKF 361
Query: 197 SGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF-IQPFEDWWEDFNINNKLKTNHP--- 252
+ + +R ++ L H F + P + +E F N + ++
Sbjct: 362 DPELLFGAQFQYRNRIAMEFNQLYHFHPLMPDSFRVGPQDYSYEQFLFNTSMLVDYGVEA 421
Query: 253 ---PFQYDPHGD------------DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEEL 297
F P G + I+ R + +NE+RK G+KP SF+EL
Sbjct: 422 LVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQEL 481
Query: 298 SDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFG 337
+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 482 TG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFG 519
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 268 IQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYL 327
I+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G L
Sbjct: 420 IKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLL 477
Query: 328 ENPLHDSLFG 337
E +S+FG
Sbjct: 478 EKCHPNSIFG 487
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 114 EPAVCYFAGDSRANQNSFLTPLQVLFLRLHNI 145
+P+V + GDS +NS + L+ LR+HN+
Sbjct: 129 KPSVSWIKGDSALRENSRIAVLESGSLRIHNV 160
>pdb|2QEZ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|E Chain E, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|F Chain F, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
Length = 455
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 258 PHGDDLTAIGIQRQRDYGMPGYNE---FRKYAGLKPVKSFEELSDVIG 302
PHGDD+ +Y GY+E R+ GLKP+K F++ + G
Sbjct: 396 PHGDDVXL-------NYQTTGYHETATLRELFGLKPIKEFDQWXEKXG 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,893,835
Number of Sequences: 62578
Number of extensions: 577280
Number of successful extensions: 953
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 81
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)