Query psy747
Match_columns 380
No_of_seqs 161 out of 1052
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:09:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 100.0 2E-103 4E-108 832.3 27.5 369 2-379 249-670 (719)
2 PF03098 An_peroxidase: Animal 100.0 3.8E-99 8E-104 786.3 16.9 350 13-379 98-509 (530)
3 PLN02283 alpha-dioxygenase 100.0 1.8E-86 3.8E-91 694.4 25.0 341 14-378 167-586 (633)
4 PF10929 DUF2811: Protein of u 54.4 11 0.00023 27.8 2.1 18 150-167 17-34 (57)
5 PF08880 QLQ: QLQ; InterPro: 49.8 12 0.00026 25.1 1.7 12 366-377 1-12 (37)
6 PF11522 Pik1: Yeast phosphati 37.7 16 0.00034 26.3 0.8 19 162-181 3-21 (51)
7 KOG1712|consensus 37.2 6.4 0.00014 35.2 -1.5 57 293-353 27-90 (183)
8 PLN00107 FAD-dependent oxidore 27.0 24 0.00052 33.9 0.4 56 129-189 140-205 (257)
9 COG4286 Uncharacterized conser 23.7 1.3E+02 0.0029 29.3 4.6 39 146-186 145-191 (306)
10 PF03690 UPF0160: Uncharacteri 23.7 1.3E+02 0.0028 29.9 4.9 41 145-185 144-194 (318)
11 KOG0358|consensus 23.3 48 0.001 33.7 1.7 38 302-340 198-235 (534)
12 PF12758 DUF3813: Protein of u 23.2 54 0.0012 24.6 1.5 13 160-172 3-15 (63)
13 PRK14469 ribosomal RNA large s 22.5 86 0.0019 31.2 3.4 53 260-314 6-60 (343)
14 KOG2948|consensus 22.4 1.3E+02 0.0028 29.5 4.4 40 146-185 150-198 (327)
15 PF03206 NifW: Nitrogen fixati 22.2 1.8E+02 0.0038 24.2 4.6 44 132-178 32-75 (105)
16 PF14043 WVELL: WVELL protein 21.8 1.3E+02 0.0029 23.3 3.5 26 142-171 3-28 (75)
17 PRK14460 ribosomal RNA large s 21.5 1.4E+02 0.0031 29.9 4.8 40 273-313 19-60 (354)
18 TIGR01677 pln_FAD_oxido plant- 20.3 43 0.00093 35.9 0.8 56 129-189 446-511 (557)
No 1
>KOG2408|consensus
Probab=100.00 E-value=1.6e-103 Score=832.31 Aligned_cols=369 Identities=39% Similarity=0.649 Sum_probs=333.1
Q ss_pred CCCCCCCCCCCCCCCcccccCC-CCCCCCCCCceEecccCcccCCCCCCCCccccccccccccccCCCCCCCHHHHHHhh
Q psy747 2 LDCCAQDYVSDLDTCLPIPILK-DHFYNNHSVTCINMVRGMTTDDLGCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLR 80 (380)
Q Consensus 2 ~~CC~~~~~~~~~~C~pI~vp~-Dp~~~~~~~~c~~~~Rs~~~~~~~c~~~preq~N~~Ts~lD~S~iYGs~~~~~~~LR 80 (380)
+.||+. +...+|.|+||.||+ ||+|.+.+ .||+|+||.+++.+++..++|+|+|++|||||+|.||||+.+++++||
T Consensus 249 ~~~C~~-~~~~~p~C~pi~~p~~dp~~~~~~-~C~~f~Rs~~~~~~~~~~~~reQlNq~T~~lD~S~IYGss~~~~~~lR 326 (719)
T KOG2408|consen 249 IRCCNK-PQLPSPPCFPIKIPPNDPYFPSNQ-RCLPFVRSLPACGSGYNLGPREQLNQLTSFLDASVIYGSSDEDARKLR 326 (719)
T ss_pred ccccCC-CcCCCCcccceecCCCCCccCCcc-cceeceecCCCccccccCChhhhhccccccccchhccCCCHHHHHHHh
Confidence 457874 567899999999999 99998755 999999999998877789999999999999999999999999999999
Q ss_pred cCCC--CeecccC---CCCccCCCCCCCCCCCCCCCCC-CCccccccCCCccccCcchHHHHHHHHHhhHHHHHHHHhhC
Q psy747 81 LFKG--GLLKGQH---VGGKEYPPNYGRPKSKCDIQPD-EPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKIN 154 (380)
Q Consensus 81 ~~~~--G~Lk~~~---~~g~~~~p~~~~~~~~c~~~~~-~~~~cf~~GD~R~ne~p~l~~lhtlf~ReHNria~~L~~~n 154 (380)
.|++ |+|++.. .+|..++|...+++..|..... .+..||.+||.|+|++|+|++|||+|+|||||||.+|+++|
T Consensus 327 ~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~~~~pgL~~~hti~lREHNRiA~~Lk~~n 406 (719)
T KOG2408|consen 327 LFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTAGDERANEQPGLAALHTLFLREHNRIATELKALN 406 (719)
T ss_pred cccCcccceeecccccccCcccCCCCCCCCccccccCCCCCCcccccCccccccCcchHHHHHHHHHHHHHHHHHHHhhC
Confidence 9998 7788773 4778899998888788977643 22579999999999999999999999999999999999999
Q ss_pred CCCCchHhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcc--------------------------------------cC
Q psy747 155 HHWDDERLYQEARKTVIGIYQWITYEEMLPVLIDITYMMI--------------------------------------AK 196 (380)
Q Consensus 155 p~w~dE~lfqeAR~Ivia~~Q~I~y~E~LP~llG~~~~~i--------------------------------------~~ 196 (380)
|||+||+|||||||||+|++|||||+||||.+||.....+ ++
T Consensus 407 p~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~~~~~~g~~~gY~~~~dp~IsneFataAfRfgHsli~~~~~~l~~ 486 (719)
T KOG2408|consen 407 PHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAPLKVSLGGYRGYDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDE 486 (719)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCcccccCCccccCcCCCCChhhhhhhhHHHHhhhcccCchhhhhhcc
Confidence 9999999999999999999999999999999999433220 01
Q ss_pred CCC----CCcccccccccCcchhh--ccHHHHHHHHhhccccCC-CCcccccccccccccCCCCCCCCCCC-CchhHHHH
Q psy747 197 SGK----AAQIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQPF-EDWWEDFNINNKLKTNHPPFQYDPHG-DDLTAIGI 268 (380)
Q Consensus 197 ~~~----~~~~~l~~~~~~p~~l~--~~~d~~~rG~~~q~~~~~-D~~~~~~~l~~~lf~~~~~~~~~~~g-~DL~a~nI 268 (380)
++. ...+.+++.|++|+.+. +++|+++|||++++++.. |..+ +.+|+++||...+ ..+ +||+||||
T Consensus 487 ~~~~~~~~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~d~~~-~~~i~~~lf~~~~-----~~~~~DL~ainI 560 (719)
T KOG2408|consen 487 NFQPIGEVVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQPAKMPDDQLL-NGEITERLFVKTD-----EDGELDLAALNI 560 (719)
T ss_pred cCcccccccCchhhhhhcchhhhhhccChhHHHHHHHhchhhcccchhc-CHHHHHHHhhhcC-----cccccchhhhhh
Confidence 110 11345667888888766 899999999999999999 8999 9999999999873 455 99999999
Q ss_pred HHhhhcCCCCHHHHHHHhCCCCCCChhhhcCCCChhHHHHHHHhcCCCCcccccccccccCCCCCCCCChHHHHHHHHHH
Q psy747 269 QRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQF 348 (380)
Q Consensus 269 qRgRDhGlp~Yn~~R~~cgl~~~~sf~dl~~~~~~~~~~~L~~lY~~~ddvDL~vG~l~E~~~~G~~~GpT~~cii~~qF 348 (380)
|||||||||+||+||++|||++++||+||.+.++++++++|+.+|+++||||||||+++|++++|+++|||++|||++||
T Consensus 561 QRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~~~~~~kl~~lY~~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~Qf 640 (719)
T KOG2408|consen 561 QRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIEPEIINKLRTLYGTPDDIDLYVGLLLEKPLPGGLVGPTLACIIAEQF 640 (719)
T ss_pred hccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhhHHHHHHHHHhcCCchhhcccccccccccCCCceecccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccceeecCCCCCCCCHHHHHHHhcc
Q psy747 349 YRWKFGDRFWFSVLGKPWSFTEGNNNYVVIY 379 (380)
Q Consensus 349 ~rlr~gDRf~yen~~~~~~ft~~ql~eIr~~ 379 (380)
.|+|+|||||||| .+|+.||++||+||||.
T Consensus 641 ~r~r~gDRf~yen-~~~~~Ft~~QL~ei~k~ 670 (719)
T KOG2408|consen 641 LRLRDGDRFWYEN-FNPGVFTPEQLEEIRKV 670 (719)
T ss_pred HHHhccCceeecC-CCCCccCHHHHHHHHHh
Confidence 9999999999999 88999999999999974
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=3.8e-99 Score=786.30 Aligned_cols=350 Identities=41% Similarity=0.683 Sum_probs=284.6
Q ss_pred CCCCcccccCC-CCCCCCCCCceEecccCcccCC--CCCCCCccccccccccccccCCCCCCCHHHHHHhhc-CCCCeec
Q psy747 13 LDTCLPIPILK-DHFYNNHSVTCINMVRGMTTDD--LGCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLRL-FKGGLLK 88 (380)
Q Consensus 13 ~~~C~pI~vp~-Dp~~~~~~~~c~~~~Rs~~~~~--~~c~~~preq~N~~Ts~lD~S~iYGs~~~~~~~LR~-~~~G~Lk 88 (380)
||+|+||+||+ ||+|.+. .+||+|+||.++++ ..|.. ||+|+|++|||||||+||||+++++++||+ +++|+||
T Consensus 98 ~~~c~~I~ip~~Dp~~~~~-~~c~~~~Rs~~~~~~~~~~~~-~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~ 175 (530)
T PF03098_consen 98 HPECFPIPIPPDDPFYRPF-VRCMPFTRSAPAPDPGQSCSL-PREQINQATSYLDLSQVYGSSEEQARRLRSSFKGGKLK 175 (530)
T ss_dssp BTTB--EE--TTEHHHHHT-TSEE--B-B-BSSTSSS-SSS-STTBEE-STSSSS-HHHH-SSHHHHHHTBESSTTTEB-
T ss_pred CCCccccccCCCcccccCC-CCCcccccccccccCCCCCcc-chhhhccccceeecccccCCCHHHHHHhhcchhhhhhh
Confidence 89999999999 9999876 89999999999965 34556 999999999999999999999999999999 9999999
Q ss_pred ccC-----CCCccCCCCCCCCCCCCCCCCCCCccccccCCCccccCcchHHHHHHHHHhhHHHHHHHHhhCCCCCchHhH
Q psy747 89 GQH-----VGGKEYPPNYGRPKSKCDIQPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLY 163 (380)
Q Consensus 89 ~~~-----~~g~~~~p~~~~~~~~c~~~~~~~~~cf~~GD~R~ne~p~l~~lhtlf~ReHNria~~L~~~np~w~dE~lf 163 (380)
+.. .+|..++|.... |... . ..||++||.|+||+|+|++|||+|+|||||||++|+++||+|+||+||
T Consensus 176 ~~~~~~~~~~~~~~lp~~~~----~~~~--~-~~~f~~GD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~de~lF 248 (530)
T PF03098_consen 176 SDNGEFPPPNGGGLLPSDDP----PTDS--G-CRCFLAGDPRVNENPGLTALHTLFLREHNRIADELKKINPHWDDERLF 248 (530)
T ss_dssp -ETSSEEBBTTBES--B-TS----CSSG--H-HGSB-TSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHSTTS-HHHHH
T ss_pred cccccccccCCCCCCCCCcc----cccc--c-ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHH
Confidence 832 466678887441 1110 0 159999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhhhhhcc-------------------------------cCCCC-------------
Q psy747 164 QEARKTVIGIYQWITYEEMLPVLIDITYMMI-------------------------------AKSGK------------- 199 (380)
Q Consensus 164 qeAR~Ivia~~Q~I~y~E~LP~llG~~~~~i-------------------------------~~~~~------------- 199 (380)
||||+||||+||||||+||||+|||.+.++. +-.|+
T Consensus 249 qeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~~~g~~~~y~~~~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~~~ 328 (530)
T PF03098_consen 249 QEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPLNNGYYKGYDPSVDPSISNEFAAAAYRFGHSMIPDTYDRWDENF 328 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G----GCGTTS-TTS--S-BTTH-HHHGGGGGGGS-SEEEEBTTTS
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcchhhhhhccccccccccccCCCCCCCCchhHHHHHHHHHhhheeehhhhhhccccC
Confidence 9999999999999999999999999876540 00010
Q ss_pred ---CCcccccccccCcc-hhh--ccHHHHHHHHhhccccCCC--CcccccccccccccCCCCCCCCCCCCchhHHHHHHh
Q psy747 200 ---AAQIDMVTWMHRPS-IVQ--GYLDHLLEGQQTQFIQPFE--DWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQ 271 (380)
Q Consensus 200 ---~~~~~l~~~~~~p~-~l~--~~~d~~~rG~~~q~~~~~D--~~~~~~~l~~~lf~~~~~~~~~~~g~DL~a~nIqRg 271 (380)
...++|.++|++|. .+. +++|.+++|+++|+++++| ..+ +++|+++||+..+ ...++||+|+|||||
T Consensus 329 ~~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~~d~~~~~-~~~l~~~lf~~~~----~~~~~DL~a~nIqRG 403 (530)
T PF03098_consen 329 EIPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQKVDNPRFL-VDDLRNHLFGPRN----VPGSLDLAALNIQRG 403 (530)
T ss_dssp BETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEHHBTTBHS-HHHHHTSEESTTS----SSEEEHHHHHHHHHH
T ss_pred CcccccccccccccCcchhhhhccchHHHHhHHhhCccccccHHHHh-hhHhhcccccccC----CcchhHHHHHHHHHH
Confidence 12346778889988 333 7999999999999999999 999 9999999998763 233369999999999
Q ss_pred hhcCCCCHHHHHHHhCCCCCCChhhhcCCC-ChhHHHHHHHhcCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHH
Q psy747 272 RDYGMPGYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYR 350 (380)
Q Consensus 272 RDhGlp~Yn~~R~~cgl~~~~sf~dl~~~~-~~~~~~~L~~lY~~~ddvDL~vG~l~E~~~~G~~~GpT~~cii~~qF~r 350 (380)
||||||+||+||++|||++++||+||.+.+ +++++++|+++|++|||||||||+|+|++++|+.+|||++|||++||.+
T Consensus 404 RdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vddvDL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~ 483 (530)
T PF03098_consen 404 RDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRALYGHVDDVDLWVGGLAEKPVPGGLLGPTFSCIIAEQFSR 483 (530)
T ss_dssp HHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHHHSSGGGSBHHHHHHHS-BSTTSSSBHHHHHHHHHHHHH
T ss_pred HHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHhccchhcccccceeeeeccccCCCCCHHHHhHHHHHHHH
Confidence 999999999999999999999999997644 5667799999999999999999999999999999999999999999999
Q ss_pred hhcCccceeecCCCCCCCCHHHHHHHhcc
Q psy747 351 WKFGDRFWFSVLGKPWSFTEGNNNYVVIY 379 (380)
Q Consensus 351 lr~gDRf~yen~~~~~~ft~~ql~eIr~~ 379 (380)
+|+|||||||| +++||++||+||||.
T Consensus 484 l~~gDRf~yen---~~~ft~~ql~~i~~~ 509 (530)
T PF03098_consen 484 LRRGDRFWYEN---PGSFTPEQLEEIRKT 509 (530)
T ss_dssp HHHTSTTGTTS---CTTCTHHHHHHHTTT
T ss_pred HHhcCcccccC---cCcCCHHHHHHHHHC
Confidence 99999999996 689999999999985
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=1.8e-86 Score=694.36 Aligned_cols=341 Identities=22% Similarity=0.282 Sum_probs=280.7
Q ss_pred CCCcccccCCCCCCCCCCCceEecccCcccCCCCCCCCccccccccccccccCCCCCCCHHHHHHhhcCCCCeecccCCC
Q psy747 14 DTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVG 93 (380)
Q Consensus 14 ~~C~pI~vp~Dp~~~~~~~~c~~~~Rs~~~~~~~c~~~preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~G~Lk~~~~~ 93 (380)
+.|.+|.+|.+ ....-..+||+|.||.+++...|.. +++|+|++|||||||+||||+++++++||++++||||++. +
T Consensus 167 ~~~~~i~~p~~-~~~~~~~~~~~f~RT~~~~~~~~~~-~~~qiN~~Ts~lD~S~IYGss~~~~~~LRtf~~GkLk~~~-~ 243 (633)
T PLN02283 167 TQQIELTAPKE-VASQCPLKSFKFYKTKEVPTGSPDI-KTGSLNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKISE-D 243 (633)
T ss_pred cccccccCCcc-cccCCcccccccccCCCCCCCCCCC-CccccccccceeecccccCCCHHHHHhhhCCCCCccCcCC-C
Confidence 46788888851 1222346899999999887656664 8999999999999999999999999999999999999853 2
Q ss_pred CccCCCCCCCCCCCCCCCCCCCccccccCCCccccCcchHHHHHHHHHhhHHHHHHHHhhCCCCCchHhHHHHHHHHHHH
Q psy747 94 GKEYPPNYGRPKSKCDIQPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGI 173 (380)
Q Consensus 94 g~~~~p~~~~~~~~c~~~~~~~~~cf~~GD~R~ne~p~l~~lhtlf~ReHNria~~L~~~np~w~dE~lfqeAR~Ivia~ 173 (380)
| ++|... ..||++||.| |++|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+
T Consensus 244 ~--~l~~~~-------------~~~~~~Gd~r-n~~pGL~~lhtLF~REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~ 307 (633)
T PLN02283 244 G--LLLHDE-------------DGIPISGDVR-NSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAV 307 (633)
T ss_pred C--CCCCCc-------------cCCcccCccc-cccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 2 444311 2489999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHhhhhhhhcc--------------------------------cC--CCC---------CCcccccc---
Q psy747 174 YQWITYEEMLPVLIDITYMMI--------------------------------AK--SGK---------AAQIDMVT--- 207 (380)
Q Consensus 174 ~Q~I~y~E~LP~llG~~~~~i--------------------------------~~--~~~---------~~~~~l~~--- 207 (380)
||||||+||||.|||.+.+.. ++ ++. +.+||+|.
T Consensus 308 ~q~I~~~EylP~iLg~~~~~~~~~~~w~gllg~~~~~~~g~~~~~~~~g~~gy~~~~~~~v~~~is~EF~aaYR~Hslip 387 (633)
T PLN02283 308 IAKIHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFGHIGGPILSGLVGLKKPNNHGVPYSLTEEFTSVYRMHSLLP 387 (633)
T ss_pred heeeeeeeccHHhcCCcccccccccccccccchhhhhhcccccccccccccCCCccccCCCCcchhHHHHHHHhhhhcCC
Confidence 999999999999998876420 00 000 11244421
Q ss_pred -------cccCc-----------------------chhh-ccHHHHHHHHhhccccCCCCcccccc-cccccccCCCCCC
Q psy747 208 -------WMHRP-----------------------SIVQ-GYLDHLLEGQQTQFIQPFEDWWEDFN-INNKLKTNHPPFQ 255 (380)
Q Consensus 208 -------~~~~p-----------------------~~l~-~~~d~~~rG~~~q~~~~~D~~~~~~~-l~~~lf~~~~~~~ 255 (380)
...++ ..+. .+++.+++||..|+++.++... ... +++.++.... +.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~l~~~Gl~~ll~~l~~q~aga~~l~n-~p~~l~~l~~~~~~-g~ 465 (633)
T PLN02283 388 DHLILRDITAAPGENKSPPLIEEIPMPELIGLKGEKKLSKIGFEKLMVSMGHQACGALELWN-YPSWMRDLVPQDID-GE 465 (633)
T ss_pred CceecccccccccccccccccccccHHHHHhhcccccccccCHHHHHHHHhhcchhcccccc-CcHHHHhhhhcccc-CC
Confidence 11111 0111 4799999999999999888655 333 4443222110 11
Q ss_pred CCCCCCchhHHHHHHhhhcCCCCHHHHHHHhCCCCCCChhhhcCCCChhHHHHHHHhcC-CCCcccccccccccCCCCCC
Q psy747 256 YDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYK-HVDDIDLFVGGYLENPLHDS 334 (380)
Q Consensus 256 ~~~~g~DL~a~nIqRgRDhGlp~Yn~~R~~cgl~~~~sf~dl~~~~~~~~~~~L~~lY~-~~ddvDL~vG~l~E~~~~G~ 334 (380)
.+..|+||+|+|||||||||||+||+||++|||++++||+||++ +++++++|+++|+ +|||||||||+++|++++|+
T Consensus 466 ~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~--d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~ 543 (633)
T PLN02283 466 DRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--DEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGF 543 (633)
T ss_pred cccccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCC--CHHHHHHHHHHhCCCHHHHHhhhhheecccCCCC
Confidence 14689999999999999999999999999999999999999998 8999999999998 89999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhcCccceeecCCCCCCCCHHHHHHHhc
Q psy747 335 LFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTEGNNNYVVI 378 (380)
Q Consensus 335 ~~GpT~~cii~~qF~rlr~gDRf~yen~~~~~~ft~~ql~eIr~ 378 (380)
.+|||++||++.||.|+++||||||||.+ |+.||++||+||++
T Consensus 544 ~vG~T~~~i~~~~a~r~~~gDRF~~en~n-p~~fT~~gl~~I~~ 586 (633)
T PLN02283 544 AISETAFFIFLLMASRRLEADRFFTSNFN-EKTYTKKGLEWVNT 586 (633)
T ss_pred CcCHHHHHHHHHHHHHHhcCCCCeEecCC-cCcCCHHHHHHHHc
Confidence 99999999999999999999999999865 89999999999987
No 4
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=54.37 E-value=11 Score=27.77 Aligned_cols=18 Identities=39% Similarity=0.776 Sum_probs=15.3
Q ss_pred HHhhCCCCCchHhHHHHH
Q psy747 150 FAKINHHWDDERLYQEAR 167 (380)
Q Consensus 150 L~~~np~w~dE~lfqeAR 167 (380)
.-+.||+||-.+|||.|=
T Consensus 17 fie~hP~WDQ~Rl~~aAL 34 (57)
T PF10929_consen 17 FIETHPNWDQYRLFQAAL 34 (57)
T ss_pred HHHcCCCchHHHHHHHHH
Confidence 446799999999999984
No 5
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.83 E-value=12 Score=25.05 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHh
Q psy747 366 WSFTEGNNNYVV 377 (380)
Q Consensus 366 ~~ft~~ql~eIr 377 (380)
+.||++|++++|
T Consensus 1 s~FT~~Ql~~L~ 12 (37)
T PF08880_consen 1 SPFTPAQLQELR 12 (37)
T ss_pred CCCCHHHHHHHH
Confidence 579999999987
No 6
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=37.75 E-value=16 Score=26.33 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q psy747 162 LYQEARKTVIGIYQWITYEE 181 (380)
Q Consensus 162 lfqeAR~Ivia~~Q~I~y~E 181 (380)
=||.+|++ +-..|+|+++.
T Consensus 3 ~Fqv~RRv-~NklQ~ilFn~ 21 (51)
T PF11522_consen 3 SFQVCRRV-INKLQHILFNT 21 (51)
T ss_dssp TTHHHHHH-HHHHT--SS-S
T ss_pred hhHHHHHH-HHHHHHHHhCC
Confidence 38999995 56788887764
No 7
>KOG1712|consensus
Probab=37.20 E-value=6.4 Score=35.20 Aligned_cols=57 Identities=23% Similarity=0.449 Sum_probs=40.6
Q ss_pred ChhhhcCCC-Chh----HHHHHHHhcCC-C-CcccccccccccCCCCCCCCChHHHHHHHHHHHHhhc
Q psy747 293 SFEELSDVI-GPE----NIHLLKLGYKH-V-DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKF 353 (380)
Q Consensus 293 sf~dl~~~~-~~~----~~~~L~~lY~~-~-ddvDL~vG~l~E~~~~G~~~GpT~~cii~~qF~rlr~ 353 (380)
-|+|++..+ ||. +++.+.+.|.+ . ..||..+|.= ..|.++||+.+--++--|.-+|+
T Consensus 27 ~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlE----aRGFLFGP~iAlalG~~fVPiRK 90 (183)
T KOG1712|consen 27 MFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLE----ARGFLFGPSIALALGAGFVPIRK 90 (183)
T ss_pred ehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeee----ecceecCcHHHHHhCCCeeeccc
Confidence 488888754 554 45555555654 2 4599888753 25899999999888888888775
No 8
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=27.01 E-value=24 Score=33.93 Aligned_cols=56 Identities=4% Similarity=0.032 Sum_probs=42.3
Q ss_pred CcchHHHHHH----------HHHhhHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy747 129 NSFLTPLQVL----------FLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEMLPVLIDI 189 (380)
Q Consensus 129 ~p~l~~lhtl----------f~ReHNria~~L~~~np~w~dE~lfqeAR~Ivia~~Q~I~y~E~LP~llG~ 189 (380)
...+..+--+ |-+.||.-++.|+++.|+|+| |.+.|+-. ==+.+-.|+||-.+||.
T Consensus 140 ~~~f~eiEqial~kygGRPHWGK~h~l~~~~l~~lYPr~~d---FlavR~~l--DP~G~F~N~yl~rllg~ 205 (257)
T PLN00107 140 EDAMEEIEQMAILKYGALPHWGKNRNAAFDGAIAKYKKAGE---FLKVKERL--DPEGLFSSEWSDKILGL 205 (257)
T ss_pred HHHHHHHHHHHHHhcCCcCCchhccCCCHHHHHHHCcCHHH---HHHHHHHh--CCCCccCCHHHHHHhCc
Confidence 3356666655 788999999999999999985 66666531 11567789999999986
No 9
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=23.71 E-value=1.3e+02 Score=29.31 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHHhhCCCCCch--------HhHHHHHHHHHHHHHHHHhhhhhHHh
Q psy747 146 LAREFAKINHHWDDE--------RLYQEARKTVIGIYQWITYEEMLPVL 186 (380)
Q Consensus 146 ia~~L~~~np~w~dE--------~lfqeAR~Ivia~~Q~I~y~E~LP~l 186 (380)
+.+.+...||+|+|| +-+|-|++.+.+.+-.|+ -|+|+-
T Consensus 145 l~~iv~~~np~~~~e~~~d~~F~~al~~a~~~l~~~~~~~~--~w~~a~ 191 (306)
T COG4286 145 LPDIVESFNPDWSDEDADDEGFLEALAFASDFLDNLFKTIV--SWLRAY 191 (306)
T ss_pred hHHHHHhcCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 788899999999974 367888888888888888 788854
No 10
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=23.65 E-value=1.3e+02 Score=29.87 Aligned_cols=41 Identities=15% Similarity=0.335 Sum_probs=31.0
Q ss_pred HHHHHHHhhCCCCCch-------HhHHHHHHHHHHHHHHHHh---hhhhHH
Q psy747 145 ILAREFAKINHHWDDE-------RLYQEARKTVIGIYQWITY---EEMLPV 185 (380)
Q Consensus 145 ria~~L~~~np~w~dE-------~lfqeAR~Ivia~~Q~I~y---~E~LP~ 185 (380)
-+...++..||.|+++ +-|.+|=.++..++..-+. .-|+|+
T Consensus 144 ~ls~~V~~~Np~w~~~~~~~~~~~~F~~A~~l~~~~f~~~v~~~~~~wlpA 194 (318)
T PF03690_consen 144 SLSSRVSRLNPSWNEPDDDEDEDERFEKAMELAGEEFENRVKYYAKSWLPA 194 (318)
T ss_pred CHHHHHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 3566788899999864 5899999999988875443 356775
No 11
>KOG0358|consensus
Probab=23.26 E-value=48 Score=33.75 Aligned_cols=38 Identities=32% Similarity=0.340 Sum_probs=33.1
Q ss_pred ChhHHHHHHHhcCCCCcccccccccccCCCCCCCCChHH
Q psy747 302 GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTF 340 (380)
Q Consensus 302 ~~~~~~~L~~lY~~~ddvDL~vG~l~E~~~~G~~~GpT~ 340 (380)
|-..++..+++=|++||.+|+-|.+++....++. |||=
T Consensus 198 dlkdIkivkklGgtvdDte~i~glvl~~~~~~~~-gptr 235 (534)
T KOG0358|consen 198 DLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSA-GPTR 235 (534)
T ss_pred chhhhhhHHhhCCccchhhhhcceEEeeecccCC-Ccch
Confidence 4556888999999999999999999999998876 8974
No 12
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=23.17 E-value=54 Score=24.64 Aligned_cols=13 Identities=46% Similarity=0.693 Sum_probs=11.0
Q ss_pred hHhHHHHHHHHHH
Q psy747 160 ERLYQEARKTVIG 172 (380)
Q Consensus 160 E~lfqeAR~Ivia 172 (380)
.+|||+||+.|-.
T Consensus 3 N~LFqqAr~aV~~ 15 (63)
T PF12758_consen 3 NRLFQQARDAVEQ 15 (63)
T ss_pred chHHHHHHHHHHH
Confidence 5799999999873
No 13
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.49 E-value=86 Score=31.22 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=37.5
Q ss_pred CCchhHHHHHHhhhcCCCCH--HHHHHHhCCCCCCChhhhcCCCChhHHHHHHHhcC
Q psy747 260 GDDLTAIGIQRQRDYGMPGY--NEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYK 314 (380)
Q Consensus 260 g~DL~a~nIqRgRDhGlp~Y--n~~R~~cgl~~~~sf~dl~~~~~~~~~~~L~~lY~ 314 (380)
++++..+- ..-.++|+|.| .+..++.=-+.+.+|+++++ ++.+..++|++.|.
T Consensus 6 ~~~~~~~~-~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~-~~~~~r~~l~~~~~ 60 (343)
T PRK14469 6 DLSYEELV-SEITELGLEKYRADQILDWIYKKKVFNFDEMTN-LSKDHRALLSEHFS 60 (343)
T ss_pred cCCHHHHH-HHHHHcCCCchHHHHHHHHHHhcCCCCHHHhcc-ccHHHHHHHhhccc
Confidence 44554431 12336899988 45556665677899999997 58999999998773
No 14
>KOG2948|consensus
Probab=22.38 E-value=1.3e+02 Score=29.55 Aligned_cols=40 Identities=20% Similarity=0.474 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCCc------hHhHHHHHHHHHHHHHH-HHh--hhhhHH
Q psy747 146 LAREFAKINHHWDD------ERLYQEARKTVIGIYQW-ITY--EEMLPV 185 (380)
Q Consensus 146 ia~~L~~~np~w~d------E~lfqeAR~Ivia~~Q~-I~y--~E~LP~ 185 (380)
+-..+.+.||+|++ ++-||+|=.+|...+-. |.+ +-|||+
T Consensus 150 l~~rv~~~N~~w~e~~~~~~~e~F~~Am~~vg~ef~~~v~~~~~sWlPa 198 (327)
T KOG2948|consen 150 LSHRVGRFNPDWNEDSDDDEDERFQRAMDLVGKEFVNSVKFYANSWLPA 198 (327)
T ss_pred hHHHHhhcCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccH
Confidence 34677889999993 67899999999887743 333 368885
No 15
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=22.22 E-value=1.8e+02 Score=24.16 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHHHH
Q psy747 132 LTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWIT 178 (380)
Q Consensus 132 l~~lhtlf~ReHNria~~L~~~np~w~dE~lfqeAR~Ivia~~Q~I~ 178 (380)
+.-||+ .=|+|-+|+.. ..++.-+++++++.+|.....-||..+
T Consensus 32 V~RLHI-LkrF~~yL~~~--~~~~~~~e~~~~~~~R~~L~~AY~dFv 75 (105)
T PF03206_consen 32 VNRLHI-LKRFGQYLRAA--DFAPGLSEEEDWAAYRRALERAYQDFV 75 (105)
T ss_pred HhhHHH-HHHHHHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 344565 46888888876 233788999999999999999888765
No 16
>PF14043 WVELL: WVELL protein
Probab=21.81 E-value=1.3e+02 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=20.9
Q ss_pred hhHHHHHHHHhhCCCCCchHhHHHHHHHHH
Q psy747 142 LHNILAREFAKINHHWDDERLYQEARKTVI 171 (380)
Q Consensus 142 eHNria~~L~~~np~w~dE~lfqeAR~Ivi 171 (380)
.+.+++.+|...||..+ |.+||-+|-
T Consensus 3 ~~e~Lt~~LlekN~~Ls----~~qArtWVE 28 (75)
T PF14043_consen 3 YFERLTNELLEKNPMLS----YEQARTWVE 28 (75)
T ss_pred HHHHHHHHHHHhCCCCC----HHHHHHHHH
Confidence 36899999999999987 556777664
No 17
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.53 E-value=1.4e+02 Score=29.93 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=32.4
Q ss_pred hcCCCCH--HHHHHHhCCCCCCChhhhcCCCChhHHHHHHHhc
Q psy747 273 DYGMPGY--NEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGY 313 (380)
Q Consensus 273 DhGlp~Y--n~~R~~cgl~~~~sf~dl~~~~~~~~~~~L~~lY 313 (380)
++|.|+| .+..++.--+.+.+|+++++ ++.+..++|++.|
T Consensus 19 ~~g~~~~r~~qi~~~~~~~~~~~~~~m~~-l~~~~r~~l~~~~ 60 (354)
T PRK14460 19 ELGEPRFRARQIWQWLWQKGARDFDSMTN-VSKALRARLAEKA 60 (354)
T ss_pred hcCCCchHHHHHHHHHHHcCCCCHHHhcc-ccHHHHHHHhcce
Confidence 7899988 45556666677899999997 5899999999876
No 18
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=20.34 E-value=43 Score=35.87 Aligned_cols=56 Identities=7% Similarity=0.102 Sum_probs=42.1
Q ss_pred CcchHHHHHH----------HHHhhHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy747 129 NSFLTPLQVL----------FLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEMLPVLIDI 189 (380)
Q Consensus 129 ~p~l~~lhtl----------f~ReHNria~~L~~~np~w~dE~lfqeAR~Ivia~~Q~I~y~E~LP~llG~ 189 (380)
.+.+..+--| |-+.|+..++.|+++.|+|+| |.+.|+-+ ==+.+-.|+||-.+||.
T Consensus 446 ~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~~~d---F~alR~~~--DP~g~F~N~yl~~l~~~ 511 (557)
T TIGR01677 446 EDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNADK---FLKVKDSY--DPKGLFSSEWSDEILGI 511 (557)
T ss_pred HHHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCCHHH---HHHHHHhc--CCCCccCCHHHHHHhCc
Confidence 4456677776 677899999999999999976 66666531 01557789999999886
Done!