Query psy747
Match_columns 380
No_of_seqs 161 out of 1052
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 19:09:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_C Myeloperoxidase; heme-p 100.0 2E-107 6E-112 832.7 30.6 358 11-379 8-419 (466)
2 3q9k_A Lactoperoxidase, LPO; b 100.0 7E-108 2E-112 854.3 21.0 359 11-379 134-547 (595)
3 1q4g_A Prostaglandin G/H synth 100.0 5.5E-85 1.9E-89 679.4 21.7 305 52-378 186-529 (553)
4 3nt1_A Prostaglandin-endoperox 100.0 1.8E-85 6.1E-90 684.0 16.5 302 54-379 188-531 (587)
5 2ju0_B Phosphatidylinositol 4- 29.7 12 0.0004 26.1 0.1 18 162-180 4-21 (52)
6 2vog_B BCL-2-modifying factor; 24.4 33 0.0011 20.1 1.4 10 344-353 16-25 (27)
7 3lqv_P Splicing factor 3B subu 24.3 51 0.0017 21.4 2.4 18 145-162 11-28 (39)
8 1tke_A Threonyl-tRNA synthetas 20.3 1E+02 0.0035 27.2 4.5 24 354-378 99-122 (224)
9 3r8n_R 30S ribosomal protein S 18.0 50 0.0017 23.0 1.5 18 263-280 35-52 (55)
10 3rfa_A Ribosomal RNA large sub 14.8 95 0.0032 30.4 3.1 43 271-314 32-76 (404)
No 1
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=1.9e-107 Score=832.72 Aligned_cols=358 Identities=30% Similarity=0.468 Sum_probs=320.4
Q ss_pred CCCCCCcccccCC-CCCCCCCCCceEecccCcccCCCCCCCCccccccccccccccCCCCCCCHHHHHHhhcCCC--Cee
Q psy747 11 SDLDTCLPIPILK-DHFYNNHSVTCINMVRGMTTDDLGCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKG--GLL 87 (380)
Q Consensus 11 ~~~~~C~pI~vp~-Dp~~~~~~~~c~~~~Rs~~~~~~~c~~~preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~--G~L 87 (380)
.+||+|+||+||+ ||+|.. +.+||+|+||.++++++ ..+||||+|++|||||||+||||+++++++||++++ |+|
T Consensus 8 ~~~~~C~pI~ip~~Dp~~~~-~~~cl~f~Rs~~~~~~g-~~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~L 85 (466)
T 1d2v_C 8 VQQPPCFPLKIPPNDPRIKN-QADCIPFFRSCPACPGS-NITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLL 85 (466)
T ss_dssp CCCTTBCCEECCTTCSSCCC-TTCEECCBCCCBSSTTC-SSSCCCBEECSCSSSSCHHHHCSSHHHHHHHBCCSSSSCCB
T ss_pred CCCCCCcceeCCCCCCCcCC-CCcceeeecCccccCCC-CCCHHHHhhccccccccccCcCCCHHHHHHHhccCCCCCee
Confidence 4689999999999 999974 56899999999997765 678999999999999999999999999999999987 999
Q ss_pred cccC---CCCccCCCCCCCCCCCCCCCCC-CCccccccCCCccccCcchHHHHHHHHHhhHHHHHHHHhhCCCCCchHhH
Q psy747 88 KGQH---VGGKEYPPNYGRPKSKCDIQPD-EPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLY 163 (380)
Q Consensus 88 k~~~---~~g~~~~p~~~~~~~~c~~~~~-~~~~cf~~GD~R~ne~p~l~~lhtlf~ReHNria~~L~~~np~w~dE~lf 163 (380)
|++. .+|+.|||...+....|..... ....||++||.|+||+|+|++|||||+|||||||++|+++||+|+||+||
T Consensus 86 k~~~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~cf~~GD~R~ne~p~l~~lhtlflReHNria~~L~~~nP~W~DE~LF 165 (466)
T 1d2v_C 86 AVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLY 165 (466)
T ss_dssp CCCSSCCBTTBCCCCBCCCTTCSGGGGCTTTCCCCBCCSSTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred ccCCccCCCCCcCCCCCCCCCCcccccccCCCcchhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHH
Confidence 9864 2688899987665566754221 12469999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhhhhhc----------------c--------cCCCC------------------CC
Q psy747 164 QEARKTVIGIYQWITYEEMLPVLIDITYMM----------------I--------AKSGK------------------AA 201 (380)
Q Consensus 164 qeAR~Ivia~~Q~I~y~E~LP~llG~~~~~----------------i--------~~~~~------------------~~ 201 (380)
||||+||||+||||||+||||+|||...+. | +-.|+ .+
T Consensus 166 qeAR~Iv~a~~Q~I~~~EyLp~ilG~~~~~~~~~~~~gy~~~v~p~isnEF~aafRfgHsli~~~~~~~~~~~~~~~~~~ 245 (466)
T 1d2v_C 166 QEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNP 245 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCCCCCCTTSCCSCBHHHHHHGGGGGGGCCSEEECBCTTSSBCSSCS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhCchhhhhcCCcccCCCCCCCCchhHHHHHHHhcccccCchhhccccccccccCCCC
Confidence 999999999999999999999999976542 0 10110 12
Q ss_pred cccccccccCcchhh--ccHHHHHHHHhhcccc--CCCCcccccccccccccCCCCCCCCCCCCchhHHHHHHhhhcCCC
Q psy747 202 QIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQ--PFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMP 277 (380)
Q Consensus 202 ~~~l~~~~~~p~~l~--~~~d~~~rG~~~q~~~--~~D~~~~~~~l~~~lf~~~~~~~~~~~g~DL~a~nIqRgRDhGlp 277 (380)
.++|.+.|++|+.+. +++|+++|||++|+++ +.|..+ +++|+++||+.. +..|+||+|+|||||||||||
T Consensus 246 ~~~l~~~~f~~~~~~~~~g~d~~lrgl~~q~a~~~~~d~~l-~~~l~~~lf~~~-----~~~~~DL~alnIqRgRDhGlp 319 (466)
T 1d2v_C 246 RVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIA-VDEIRERLFEQV-----MRIGLDLPALNMQRSRDHGLP 319 (466)
T ss_dssp EEEGGGTTTCHHHHHHTTCHHHHHHHHHHSEEECCBTTBCS-CHHHHTCBTGGG-----SSSCBCHHHHHHHHHHHTTCC
T ss_pred ceeHHHHhcChHHHhhccCchHHHHHHhhCccccccCchhh-hHHHHHHhhccc-----CccchhHHHHHHHHHHHcCCC
Confidence 467888889997665 8999999999999987 679999 999999999987 578999999999999999999
Q ss_pred CHHHHHHHhCCCCCCChhhhcCCC-ChhHHHHHHHhcCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHhhcCcc
Q psy747 278 GYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDR 356 (380)
Q Consensus 278 ~Yn~~R~~cgl~~~~sf~dl~~~~-~~~~~~~L~~lY~~~ddvDL~vG~l~E~~~~G~~~GpT~~cii~~qF~rlr~gDR 356 (380)
+||+||++|||++++||+||++.+ +++++++|+++|++|||||||||+|+|++++|+.+||||+|||++||+|||+|||
T Consensus 320 ~YN~~R~~~gL~~~~tf~dl~~~~~d~~~~~~L~~lY~~~d~vDL~vG~laE~~~~G~~~Gptf~~ii~~qf~rLr~gDR 399 (466)
T 1d2v_C 320 GYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDR 399 (466)
T ss_dssp CHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTCSSCHHHHHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHcCCCCCCCHHHHhhccCCHHHHHHHHHHhCCccccceeecccccccCCCCCCCHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999654 6789999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCHHHHHHHhcc
Q psy747 357 FWFSVLGKPWSFTEGNNNYVVIY 379 (380)
Q Consensus 357 f~yen~~~~~~ft~~ql~eIr~~ 379 (380)
||||| |+.||++||+||||.
T Consensus 400 f~yen---~~~ft~~ql~ei~~~ 419 (466)
T 1d2v_C 400 FWWEN---EGVFSMQQRQALAQI 419 (466)
T ss_dssp TCTTS---TTTSCHHHHHHHTTC
T ss_pred ccccC---CCcccchhhHHHHhC
Confidence 99997 789999999999984
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=7.1e-108 Score=854.25 Aligned_cols=359 Identities=32% Similarity=0.516 Sum_probs=320.4
Q ss_pred CCCCCCcccccCC-CCCCCCCCCceEecccCcccCCCCCCCC--ccccccccccccccCCCCCCCHHHHHHhhcCCC--C
Q psy747 11 SDLDTCLPIPILK-DHFYNNHSVTCINMVRGMTTDDLGCPLS--PIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKG--G 85 (380)
Q Consensus 11 ~~~~~C~pI~vp~-Dp~~~~~~~~c~~~~Rs~~~~~~~c~~~--preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~--G 85 (380)
.+||+|+||+||+ ||+|...+ .||+|+||+++++ .|..+ ||||+|++|||||||+||||+++++++||++++ |
T Consensus 134 ~~~~~C~pI~ip~~Dp~~~~~~-~Cm~f~RS~~~~~-~~~~~~~~reQiN~~Ts~lD~S~VYGss~~~~~~LR~~~~~~G 211 (595)
T 3q9k_A 134 IQGDNCFPIMFPKNDPKLKTQG-KCMPFFRAGFVCP-TPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLG 211 (595)
T ss_dssp CCBTTBCCEECCTTCHHHHHSC-SEECCBCBCBSSC-SSCCCSSCCCBEECSCSSSSCHHHHCSSHHHHHHTBCCSSTTC
T ss_pred cCCCCceeeeCCCCCCcccCCC-ceeEeecCCCcCC-CCCCCcchHhhhccccceeeeeeccCCCHHHHHHHhCCCCCCc
Confidence 4689999999999 99996544 5999999999875 46666 999999999999999999999999999999998 9
Q ss_pred eecccCC---CCccCCCCCCCCCCCCCCCCC-CCccccccCCCccccCcchHHHHHHHHHhhHHHHHHHHhhCCCCCchH
Q psy747 86 LLKGQHV---GGKEYPPNYGRPKSKCDIQPD-EPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDER 161 (380)
Q Consensus 86 ~Lk~~~~---~g~~~~p~~~~~~~~c~~~~~-~~~~cf~~GD~R~ne~p~l~~lhtlf~ReHNria~~L~~~np~w~dE~ 161 (380)
+||++.. +|+.|||...+....|..... ....||++||.|+||+|+|++|||||+|||||||++|+++||+|+||+
T Consensus 212 ~Lk~~~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~ne~p~L~~lhtlflREHNria~~L~~~nP~W~dE~ 291 (595)
T 3q9k_A 212 LMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEK 291 (595)
T ss_dssp CBCCCSSCCBTTBCCCCBCCCSSCHHHHTCTTTCCCCBCCSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred eeecccccCCCCccCCCCCCCCCCcccccCCCCCCcccccCCccccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 9998864 899999987766666743221 114699999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc---------------c--------cCCC--------------C----C
Q psy747 162 LYQEARKTVIGIYQWITYEEMLPVLIDITYMM---------------I--------AKSG--------------K----A 200 (380)
Q Consensus 162 lfqeAR~Ivia~~Q~I~y~E~LP~llG~~~~~---------------i--------~~~~--------------~----~ 200 (380)
|||||||||||+||||||+||||+|||.+..+ | +-.| . .
T Consensus 292 LfQeAR~Iv~A~~Q~Ity~E~LP~ilG~~~~~~~~~~~gY~~~v~p~i~neF~aafRfgHsli~~~~~~~~~~~~~~~~~ 371 (595)
T 3q9k_A 292 LYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPE 371 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHGGGHHHHSCSCCCCCTTSCCCCBTTHHHHGGGGGGGCCSEEECBCTTSSBCSTT
T ss_pred HHHHHHHHHHHHeeeeeHHHHHHHHhCchhhhhCCCccCCCCCCCCccHHHHHHHHHhHHhhCcchhhccCccccccCCC
Confidence 99999999999999999999999999987211 1 1011 1 1
Q ss_pred CcccccccccCcchhh--ccHHHHHHHHhhcccc--CCCCcccccccccccccCCCCCCCCCCCCchhHHHHHHhhhcCC
Q psy747 201 AQIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQ--PFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGM 276 (380)
Q Consensus 201 ~~~~l~~~~~~p~~l~--~~~d~~~rG~~~q~~~--~~D~~~~~~~l~~~lf~~~~~~~~~~~g~DL~a~nIqRgRDhGl 276 (380)
+.++|++.|++|..+. +++|.++|||+.|+++ +.|..+ +++|+++||+... ..+|+||+|+||||||||||
T Consensus 372 ~~~~L~~~ff~~~~~~~~~gid~llrGl~~q~a~~~~~d~~~-~~~l~~~Lf~~~~----~~~g~DL~alnIqRgRdhGl 446 (595)
T 3q9k_A 372 AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMV-TSELRNKLFQPTH----KIHGFDLAAINLQRCRDHGM 446 (595)
T ss_dssp CEEEGGGGBTCCHHHHTTTCSHHHHHHHHHSEEECCCTTSCS-CHHHHTCEECTTS----CSEEECHHHHHHHHHHHTTC
T ss_pred CceeHHHHhcChHHhhhccchHHHHHHHhhCcccccCCCccC-CHHHHHHhccCCC----ccccccHHHHHHHHHHHhCC
Confidence 3577889999998665 8999999999999999 899999 9999999998763 33499999999999999999
Q ss_pred CCHHHHHHHhCCCCCCChhhhcCCC-ChhHHHHHHHhcCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHhhcCc
Q psy747 277 PGYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGD 355 (380)
Q Consensus 277 p~Yn~~R~~cgl~~~~sf~dl~~~~-~~~~~~~L~~lY~~~ddvDL~vG~l~E~~~~G~~~GpT~~cii~~qF~rlr~gD 355 (380)
|+||+||++|||++++||+||++.+ +++++++|+++|++|||||||||+|+|++++|+.+||||+|||++||+|||+||
T Consensus 447 p~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~~l~~lY~~~d~iDl~vG~l~E~~~~g~~~Gptf~~ii~~qf~~lr~gD 526 (595)
T 3q9k_A 447 PGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGD 526 (595)
T ss_dssp CCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTBSSCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHcCCCCCCCHHHHhhhcCcHHHHHHHHHHhCCccccceeecccccccCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999655 577889999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCCHHHHHHHhcc
Q psy747 356 RFWFSVLGKPWSFTEGNNNYVVIY 379 (380)
Q Consensus 356 Rf~yen~~~~~~ft~~ql~eIr~~ 379 (380)
|||||| |+.||++||+||||.
T Consensus 527 Rf~yen---~~~ft~~ql~ei~~~ 547 (595)
T 3q9k_A 527 RFWWEN---PGVFTEKQRDSLQKV 547 (595)
T ss_dssp TTCTTS---BTTBCHHHHHHHTTC
T ss_pred CCeecC---CCcCCHHHHHHHHhC
Confidence 999998 689999999999985
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=5.5e-85 Score=679.38 Aligned_cols=305 Identities=23% Similarity=0.269 Sum_probs=265.0
Q ss_pred ccccccccccccccCCCCCCCHHHHHHhhcCCCCeecccCCCCccCCCCCCCCCCCCCCCC-CCCccccccCCCccccCc
Q psy747 52 PIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKSKCDIQP-DEPAVCYFAGDSRANQNS 130 (380)
Q Consensus 52 preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~G~Lk~~~~~g~~~~p~~~~~~~~c~~~~-~~~~~cf~~GD~R~ne~p 130 (380)
+.+++|++|||||||+||||+++++++||++++|+||++..+|+.|||........|.... ..+..||++||.|+||+|
T Consensus 186 ~~~~~N~~T~~lD~S~vYGs~~~~~~~LR~~~~G~Lk~~~~~g~~~~P~~~~~~~~~~~~~~~~~~~cf~~GD~R~ne~p 265 (553)
T 1q4g_A 186 GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLP 265 (553)
T ss_dssp CTTBBSCTTCSSSCHHHHCSSHHHHHHHBCSSTTCBCCEEETTEEECCBTTTSCCCCCCCTTCCGGGSBCCSSTTGGGCH
T ss_pred chhhcccccccccccccCCCCHHHHHhhhcCCCCEecccCCCCccCCCccCCCCCcccCCCCCCchhccccCccccCcCH
Confidence 4579999999999999999999999999999999999987789889997543222222111 112579999999999999
Q ss_pred chHHHHHHHHHhhHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc-ccC-------------
Q psy747 131 FLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEMLPVLIDITYMM-IAK------------- 196 (380)
Q Consensus 131 ~l~~lhtlf~ReHNria~~L~~~np~w~dE~lfqeAR~Ivia~~Q~I~y~E~LP~llG~~~~~-i~~------------- 196 (380)
+|++|||||+|||||||++|+++||+|+||+||||||+||||+||||||+||||+|+|...+. ++.
T Consensus 266 ~L~~lhtlflReHNria~~L~~~nP~W~DE~LFQeAR~Iv~a~~Q~I~~~EyLp~ilg~~~~~~~dp~~~~~~~~~~~~~ 345 (553)
T 1q4g_A 266 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNR 345 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCcccccCCCcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999986532 110
Q ss_pred ----------CCC---------CCcccccccccCcchhh-ccHHHHHHHHhhccccCCCCcccccccccccccCCCCCCC
Q psy747 197 ----------SGK---------AAQIDMVTWMHRPSIVQ-GYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQY 256 (380)
Q Consensus 197 ----------~~~---------~~~~~l~~~~~~p~~l~-~~~d~~~rG~~~q~~~~~D~~~~~~~l~~~lf~~~~~~~~ 256 (380)
.|+ ...++|++.|++|..+. +++|.+++||..|+++++|.. ++.
T Consensus 346 is~EF~~ayR~Hslip~~~~~~~~~~~l~~~ff~~~~~~~~g~~~ll~g~~~q~a~~~~~~------~n~---------- 409 (553)
T 1q4g_A 346 IAMEFNQLYHWHPLMPDSFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGG------RNI---------- 409 (553)
T ss_dssp CBHHHHHHTCCGGGSCSSEEETTEEECHHHHTTCSSHHHHHCHHHHHHHHHHSBCBCSSSS------SCB----------
T ss_pred hhHHHHHHhcccccCCcccccCCCcccHHHHhcCchhhhcccHHHHHHHhhhchhhccccc------ccC----------
Confidence 111 11356778889998776 899999999999999987432 221
Q ss_pred CCCCCchhHHHHHHhhhcCCCCHHHHHHHhCCCCCCChhhhcCCCChhHHHHHHHhcCCCCcccccccccccCCCCCCCC
Q psy747 257 DPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLF 336 (380)
Q Consensus 257 ~~~g~DL~a~nIqRgRDhGlp~Yn~~R~~cgl~~~~sf~dl~~~~~~~~~~~L~~lY~~~ddvDL~vG~l~E~~~~G~~~ 336 (380)
...++||+++|||||||||||+||+||++|||++++||+||++ +++++++|+++|++|||||||||+|+|++++|+++
T Consensus 410 ~~~~~dL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~--d~~~~~~L~~lY~~~ddiDL~vG~laE~~~~G~~~ 487 (553)
T 1q4g_A 410 DHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIF 487 (553)
T ss_dssp CTTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHHHHHSCBCTTCSS
T ss_pred cHHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhcC--CHHHHHHHHHHhcChhhccccccccccccCCCCCc
Confidence 3467999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred ChHHHHHHHH-HHHHhh---cCccceeecCCCCCCCCHHHHHHHhc
Q psy747 337 GPTFTYVIAD-QFYRWK---FGDRFWFSVLGKPWSFTEGNNNYVVI 378 (380)
Q Consensus 337 GpT~~cii~~-qF~rlr---~gDRf~yen~~~~~~ft~~ql~eIr~ 378 (380)
||||+|||++ ||++|+ +|||||| + |++||++||.||+|
T Consensus 488 Gpt~~~ii~~~~~~~l~~~~~~d~~~~-~---~~~ft~~ql~ei~~ 529 (553)
T 1q4g_A 488 GESMIEMGAPFSLKGLLGNPICSPEYW-K---ASTFGGEVGFNLVK 529 (553)
T ss_dssp BHHHHHHHHHHHHHHHHTSGGGSTTTC-S---GGGGTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcCCCcccc-C---CCCcCHHHHHHHHH
Confidence 9999999998 799997 5999888 2 78999999999975
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=100.00 E-value=1.8e-85 Score=683.96 Aligned_cols=302 Identities=25% Similarity=0.349 Sum_probs=262.6
Q ss_pred ccccccccccccCCCCCCCHHHHHHhhcCCCCeecccCCCCccCCCCCCCCCCCCCCCCC-CCccccccCCCccccCcch
Q psy747 54 QHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKSKCDIQPD-EPAVCYFAGDSRANQNSFL 132 (380)
Q Consensus 54 eq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~G~Lk~~~~~g~~~~p~~~~~~~~c~~~~~-~~~~cf~~GD~R~ne~p~l 132 (380)
...|++|||||||+||||+++++++||++++|+||++..+|++|||...+....|..... .+..||++||.|+||+|+|
T Consensus 188 ~~~n~~t~~lD~S~IYGss~~~~~~LR~~~~G~Lk~~~~~g~~~pP~~~~~~~~~~~~~~~~~~~cf~~GD~R~ne~pgL 267 (587)
T 3nt1_A 188 GFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGL 267 (587)
T ss_dssp TBBSCTTCSCCCHHHHCSSHHHHHHHBCSSTTCBCCEEETTEEECCBHHHHCCCCCCCTTSCGGGCBCCSSTTTTSCHHH
T ss_pred ccccCccceeeeccCCCCCHHHHHhccCCCCCeeeeecCCCccCCCCCCCcccccccCCCCCcccccccCCcccccChHH
Confidence 458999999999999999999999999999999999878899999985433334443221 2257999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc-----cc------------
Q psy747 133 TPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEMLPVLIDITYMM-----IA------------ 195 (380)
Q Consensus 133 ~~lhtlf~ReHNria~~L~~~np~w~dE~lfqeAR~Ivia~~Q~I~y~E~LP~llG~~~~~-----i~------------ 195 (380)
++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|+|...+. +.
T Consensus 268 ~alhtlflREHNriA~~L~~~nP~W~DE~LFQeAR~Iv~A~~Q~Ity~EyLP~ilG~~~~~~~dp~~~~~~~~~~~~~is 347 (587)
T 3nt1_A 268 MMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIA 347 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTSCCCSCCCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhheeeeHHHHHHHhcCcchhcccCcccccCCCCCcCchHH
Confidence 9999999999999999999999999999999999999999999999999999999987642 10
Q ss_pred -------CCCC---------CCcccccccccCcchhh-ccHHHHHHHHhhccccCCCCcccccccccccccCCCCCCCCC
Q psy747 196 -------KSGK---------AAQIDMVTWMHRPSIVQ-GYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDP 258 (380)
Q Consensus 196 -------~~~~---------~~~~~l~~~~~~p~~l~-~~~d~~~rG~~~q~~~~~D~~~~~~~l~~~lf~~~~~~~~~~ 258 (380)
-.|+ ...++|+++|++|..+. +++|++++||+.|+++++|..- |. ..
T Consensus 348 ~eF~~a~~~Hslip~~~~~~~~~~~l~~~ff~p~~~~~~gid~llrgl~~q~a~~~~~~~------n~----------~~ 411 (587)
T 3nt1_A 348 SEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGR------NV----------PI 411 (587)
T ss_dssp HHHHHHTCCGGGSCSSEEETTEEECHHHHTTCTHHHHHHHHHHHHHHHHHSBCBCSSSSS------CB----------CG
T ss_pred HHHHHHHhccccCCcccccCCCcccHHHHhcCccccchhhHHHHHHHHHHhhhhcccccc------cC----------ch
Confidence 0011 12356778889997776 8999999999999999876421 21 35
Q ss_pred CCCchhHHHHHHhhhcCCCCHHHHHHHhCCCCCCChhhhcCCCChhHHHHHHHhcCCCCcccccccccccCCCCCCCCCh
Q psy747 259 HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGP 338 (380)
Q Consensus 259 ~g~DL~a~nIqRgRDhGlp~Yn~~R~~cgl~~~~sf~dl~~~~~~~~~~~L~~lY~~~ddvDL~vG~l~E~~~~G~~~Gp 338 (380)
.++||+|+|||||||||||+||+||++|||++++||+||++ +++++++|++||++|||||||||+|+|++++|+++||
T Consensus 412 ~~~DL~alnIqRGRDhGlp~YN~~R~~cgL~~~~tf~dl~~--~~~~~~~L~~lY~~~ddIDL~vGglaE~~~pG~~vGp 489 (587)
T 3nt1_A 412 AVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGE 489 (587)
T ss_dssp GGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHHHHHSCCSTTCSSCH
T ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhCC--CHHHHHHHHHHhCCHhheeeecccccccCCCCccHHH
Confidence 67899999999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH------HHhhcCccceeecCCCCCCCCHHH-HHHHhcc
Q psy747 339 TFTYVIADQF------YRWKFGDRFWFSVLGKPWSFTEGN-NNYVVIY 379 (380)
Q Consensus 339 T~~cii~~qF------~rlr~gDRf~yen~~~~~~ft~~q-l~eIr~~ 379 (380)
||+|| +.|| .++|.|||||+ |++||.+| +++|||.
T Consensus 490 Tf~ci-~~qf~l~~~~~~~r~gDrfw~-----~~~Ft~~qgl~~I~~~ 531 (587)
T 3nt1_A 490 TMVEL-GAPFSLKGLMGNPICSPQYWK-----PSTFGGEVGFKIINTA 531 (587)
T ss_dssp HHHHH-HHHHHHHHHHTSGGGSTTTSS-----GGGGTSHHHHHHHHTC
T ss_pred HHHHH-HHHHHHHHHhcCcccCCcccC-----cCccChHHHHHHHHHC
Confidence 99999 6674 88999999993 67999999 8999974
No 5
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=29.70 E-value=12 Score=26.10 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy747 162 LYQEARKTVIGIYQWITYE 180 (380)
Q Consensus 162 lfqeAR~Ivia~~Q~I~y~ 180 (380)
=||.+|++ +-.+|+|+++
T Consensus 4 ~Fqv~Rr~-~NklQ~ilFn 21 (52)
T 2ju0_B 4 GFQVARRV-LNNLQTNLFN 21 (52)
T ss_dssp TTHHHHHH-HHHHTCCSSC
T ss_pred hhHHHHHH-HHHHHHHHhC
Confidence 48999995 5677888754
No 6
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=24.44 E-value=33 Score=20.14 Aligned_cols=10 Identities=60% Similarity=0.700 Sum_probs=7.9
Q ss_pred HHHHHHHhhc
Q psy747 344 IADQFYRWKF 353 (380)
Q Consensus 344 i~~qF~rlr~ 353 (380)
|+|||.|+..
T Consensus 16 I~DQFHR~h~ 25 (27)
T 2vog_B 16 IADQFHRLHT 25 (27)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 6799999863
No 7
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.31 E-value=51 Score=21.42 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.3
Q ss_pred HHHHHHHhhCCCCCchHh
Q psy747 145 ILAREFAKINHHWDDERL 162 (380)
Q Consensus 145 ria~~L~~~np~w~dE~l 162 (380)
++-+++...|--|+||+|
T Consensus 11 ~~~~ei~~RNrpltDEeL 28 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEEL 28 (39)
T ss_dssp HHHHHHHHTTCCCCHHHH
T ss_pred HhhccchhhcCCCCHHHH
Confidence 566788889999999987
No 8
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=20.34 E-value=1e+02 Score=27.17 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=17.8
Q ss_pred CccceeecCCCCCCCCHHHHHHHhc
Q psy747 354 GDRFWFSVLGKPWSFTEGNNNYVVI 378 (380)
Q Consensus 354 gDRf~yen~~~~~~ft~~ql~eIr~ 378 (380)
+|+|||+-.. +..+|+++|.+|.+
T Consensus 99 ~~g~y~d~~~-~~~~t~edl~~IE~ 122 (224)
T 1tke_A 99 DNGFYYDVDL-DRTLTQEDVEALEK 122 (224)
T ss_dssp TTEEEEEEEC-SSCCCHHHHHHHHH
T ss_pred CCeEEEEEeC-CCCCCHHHHHHHHH
Confidence 4678887543 34699999999964
No 9
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=17.95 E-value=50 Score=23.05 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.8
Q ss_pred hhHHHHHHhhhcCCCCHH
Q psy747 263 LTAIGIQRQRDYGMPGYN 280 (380)
Q Consensus 263 L~a~nIqRgRDhGlp~Yn 280 (380)
.++.-|.|+|.+||=||.
T Consensus 35 ~l~~AIKrAR~~~LlP~~ 52 (55)
T 3r8n_R 35 QLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 468899999999998885
No 10
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=14.76 E-value=95 Score=30.39 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=32.6
Q ss_pred hhhcCCCCHH--HHHHHhCCCCCCChhhhcCCCChhHHHHHHHhcC
Q psy747 271 QRDYGMPGYN--EFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYK 314 (380)
Q Consensus 271 gRDhGlp~Yn--~~R~~cgl~~~~sf~dl~~~~~~~~~~~L~~lY~ 314 (380)
-.++|.|+|- +.-+++--+.+.+|++|++ ++.+..++|++.|.
T Consensus 32 ~~~~g~~~fra~qi~~w~~~~~~~~~~~mt~-l~k~~r~~l~~~~~ 76 (404)
T 3rfa_A 32 FKDLGEKPFRADQVMKWMYHYCCDNFDEMTD-INKVLRGKLKEVAE 76 (404)
T ss_dssp HHHTTCCHHHHHHHHHHHHHSCCCCGGGCTT-SCHHHHHHHHHHEE
T ss_pred HHHcCCcchHHHHHHHHHHhcCCCChHHhcc-cCHHHHHHHHhcCC
Confidence 3468999874 3334555567899999987 68999999998873
Done!