RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy747
(380 letters)
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 260 bits (664), Expect = 4e-83
Identities = 102/409 (24%), Positives = 160/409 (39%), Gaps = 58/409 (14%)
Query: 2 LDCCAQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQHVIDLTH 61
++C C P+ I + + CI R G ++ + LT
Sbjct: 1 VNCETSCVQQP--PCFPLKIPPNDPRIKNQADCIPFFRSCPACP-GSNITIRNQINALTS 57
Query: 62 FLDVSPVYGSTRKIAEKLRLFKGGLLK-----GQHVGGKEYPPNYGRPKSKCDIQPDEPA 116
F+D S VYGS +A LR L G+ P C +
Sbjct: 58 FVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSAR 117
Query: 117 V-CYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQ 175
+ C+ AGD+R+++ LT + L LR HN LA E +N WD ERLYQEARK V + Q
Sbjct: 118 IPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQ 177
Query: 176 WITYEEMLPVLIDITYMMIAKSGK------------------------------------ 199
ITY + LP+++ T M
Sbjct: 178 IITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNR 237
Query: 200 ------AAQIDMVTWMHRPSIV--QGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNH 251
++ + V +G +D +L G P + ++ +++
Sbjct: 238 YQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMA---TPAKLNRQNQIAVDEI-RER 293
Query: 252 PPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIH-LLK 310
Q G DL A+ +QR RD+G+PGYN +R++ GL ++ +L V+ + L
Sbjct: 294 LFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLM 353
Query: 311 LGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWF 359
Y ++ID+++GG E GP +I QF + + GDRFW+
Sbjct: 354 EQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWW 402
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 260 bits (664), Expect = 1e-81
Identities = 79/348 (22%), Positives = 130/348 (37%), Gaps = 29/348 (8%)
Query: 43 TDDLGCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYG 102
TD P L H +D++ +YG T KLRLFK G LK Q +GG+ YPP
Sbjct: 181 TDHKRGP----GFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVK 236
Query: 103 RPKSKCDIQPDEPA-VCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDER 161
+ + P P + + G L ++LR HN + + + W DE+
Sbjct: 237 DTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQ 296
Query: 162 LYQEARKTVIGIYQWITYEEMLPVLIDITYMMI----------AKSGKAAQIDMVTWMHR 211
L+Q +R +IG I E+ + L + + + + T H
Sbjct: 297 LFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHW 356
Query: 212 PSIVQGYLDHLLEGQQTQFIQPFEDW--WEDFNINNKLKTN--------HPPFQYDPHGD 261
++ + Q+ F Q + + + +++
Sbjct: 357 HPLLPDTFNIE--DQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQ 414
Query: 262 DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDL 321
+ I + R+ NE+RK LKP SFEEL+ E LK Y +D ++L
Sbjct: 415 AVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAAELKALYSDIDVMEL 472
Query: 322 FVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 369
+ +E P D++FG T + A + G+ KP +F
Sbjct: 473 YPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFG 520
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 249 bits (636), Expect = 7e-78
Identities = 73/331 (22%), Positives = 114/331 (34%), Gaps = 23/331 (6%)
Query: 59 LTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKSKCDIQPDEPAV- 117
L H +D+ +YG + +LRLFK G LK Q + G+ YPP+ P
Sbjct: 193 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 252
Query: 118 CYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
G L ++LR HN + + W DE+L+Q AR +IG I
Sbjct: 253 QMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI 312
Query: 178 TYEEMLPVLIDITYMMI----AKSGKAAQID---------------MVTWMHRPSIVQGY 218
EE + L + G Q ++ R
Sbjct: 313 VIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDYS 372
Query: 219 LDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPG 278
+ L E + F D H + I+ R +
Sbjct: 373 YEQFLFNTSMLVDYGVEALVDAF-SRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQP 431
Query: 279 YNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGP 338
+NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE +S+FG
Sbjct: 432 FNEYRKRFGMKPYTSFQELTGE--KEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGE 489
Query: 339 TFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 369
+ + A + G+ K +F
Sbjct: 490 SMIEMGAPFSLKGLLGNPICSPEYWKASTFG 520
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 236 bits (602), Expect = 1e-72
Identities = 113/423 (26%), Positives = 171/423 (40%), Gaps = 57/423 (13%)
Query: 3 DCCAQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLG-CPLSPIQHVIDLTH 61
++Y D C PI K+ C+ R + + +T
Sbjct: 126 KTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTS 185
Query: 62 FLDVSPVYGSTRKIAEKLRLFKGGLLK-----GQHVGGKEYPPNYGRPKSKCDIQPDEPA 116
FLD S VYGS +A +LR L G Y P + S C+
Sbjct: 186 FLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTAR 245
Query: 117 V-CYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQ 175
V C+ AGD RA++ L L LR HN LARE K+N HW+ E+LYQEARK + Q
Sbjct: 246 VPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQ 305
Query: 176 WITYEEMLPVLIDITYM---------------MIAKSGKAA------------------- 201
IT+ + LP+++ I+ A
Sbjct: 306 IITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENY 365
Query: 202 -------QIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHP 252
++ + T + G +D L+ G + + +D + ++L+
Sbjct: 366 QPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRG---LLAKKSKLMNQDKMVTSELRNKLF 422
Query: 253 PFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIH-LLKL 311
+ HG DL AI +QR RD+GMPGYN +R + GL K+ + L V+ + + L
Sbjct: 423 QPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMD 482
Query: 312 GYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTEG 371
YK D+ID+++GG E + GP ++ QF + + GDRFW+ P FTE
Sbjct: 483 LYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEK 539
Query: 372 NNN 374
+
Sbjct: 540 QRD 542
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 1e-09
Identities = 68/429 (15%), Positives = 120/429 (27%), Gaps = 158/429 (36%)
Query: 12 DLDTCLPIP--------ILKDHFYNN-HSVTCINMVRGMTTDDLGCPLSPIQHVIDL-TH 61
L+ L +P L++ F T G DD P +P +L
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPT-----EGFAADDE--PTTPA----ELVGK 63
Query: 62 FLD-----VSP-VYGSTRKIAEK-LRLFKGGLLKGQ--HVGGKEYPPNYGRP--KSKCDI 110
FL V P G ++ L F+ L+G H + K+K I
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 111 QPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFA------KINHHWDDERLYQ 164
+ Y A + LF + A+ A + +++
Sbjct: 124 K------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE------ 171
Query: 165 EARKTVIGIYQWITYEEMLPVLIDITYMMIAKSGKAAQ---------IDMVTWMHRPSIV 215
E R +YQ TY ++ LI + +++ + ++++ W+ PS
Sbjct: 172 ELRD----LYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 216 --QGYLDH------LLEGQQTQFIQ-----------PFE--------------------- 235
+ YL L+ Q P E
Sbjct: 226 PDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 236 ---DWWEDF--NINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKP 290
D WE F ++ + L IG++ Y P + L P
Sbjct: 284 AETDSWESFFVSVRKAITV-------------LFFIGVRCYEAY--PNTS-------LPP 321
Query: 291 --VKSFEE---------LSDVIGPENIHLLKLGYKHVDDIDLFVGGYL--ENPLHDSLF- 336
++ E LS + + +V+ + +L + SL
Sbjct: 322 SILEDSLENNEGVPSPMLS-ISNLTQEQVQ----DYVNKTN----SHLPAGKQVEISLVN 372
Query: 337 GPTFTYVIA 345
G V++
Sbjct: 373 GAK-NLVVS 380
Score = 38.9 bits (90), Expect = 0.003
Identities = 61/345 (17%), Positives = 107/345 (31%), Gaps = 126/345 (36%)
Query: 48 CPLS-PIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKS 106
P+S P+ VI L H++ + + G T E KG Q +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLKGATGHSQGL-------------- 277
Query: 107 KCDIQPDEPAVCYFAGDSRANQNSFLT----PLQVLF---LRLHNILAREFAKINHHWDD 159
+ AV DS SF + VLF +R + + +
Sbjct: 278 ---V----TAVAIAETDSWE---SFFVSVRKAITVLFFIGVRCY----EAYPNTSL---P 320
Query: 160 ERLYQEARKTVIGIYQWITYEEMLPVLIDITY----MMIAK------SGKAAQIDMV-TW 208
+ +++ + G+ + ML + ++T + K +GK +I +V
Sbjct: 321 PSILEDSLENNEGV---PSP--MLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG- 373
Query: 209 MHRPSIVQGY------LDHLLEGQ-------QTQFIQPFEDWWEDFNINNKLKTNH---P 252
+ +V G L+ L Q++ PF + KLK ++ P
Sbjct: 374 -AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--IPFSE--------RKLKFSNRFLP 422
Query: 253 ---PF--QY-----DPHGDDLTAIGIQ-RQRDYGMPGYN-----EFRKYAGLKPVKSFEE 296
PF D DL + +D +P Y+ + R +G E
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS----ER 478
Query: 297 LSDVIGPENIH---LLKLGYKHVDDIDLFVGGYLENPLHDSLFGP 338
+ D I + + H+ +D FGP
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHI--LD---------------FGP 506
Score = 32.3 bits (73), Expect = 0.30
Identities = 34/223 (15%), Positives = 51/223 (22%), Gaps = 105/223 (47%)
Query: 174 YQWITYEEML-------PVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQ 226
Y + +E ++ + +I T+ +G L
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINE----------HSTSYTFRS-E---KGLLS------ 1727
Query: 227 QTQFIQP---------FEDWWEDFNIN-NKLKTNHP--------------PFQYDPHGDD 262
TQF QP FED I + H +
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE------- 1780
Query: 263 LTAIGIQRQR----------------DYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI 306
+ + + R +YGM N R A S E L V
Sbjct: 1781 -SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF----SQEALQYV------ 1829
Query: 307 HLLKLGYKHVDDIDLFVGGYLE----NPLHDSLFGPTFTYVIA 345
V+ + G +E N YV A
Sbjct: 1830 ---------VERVGKRTGWLVEIVNYN-------VENQQYVAA 1856
Score = 28.9 bits (64), Expect = 3.6
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 24/99 (24%)
Query: 17 LPIPILKDHFYNNH-------SVTCINMVRGMTTDDLGCPLS-PIQHVIDLTHFLDVSPV 68
+ IP+ ++ S++ +V + P+ TH LD P
Sbjct: 455 IQIPVY--DTFDGSDLRVLSGSISE-RIVDCIIRL----PVKWETTTQFKATHILDFGP- 506
Query: 69 YGSTRKIAEKLRLFKGGLLKGQHV---GGKEYPPN--YG 102
G + K G G V G + P+ YG
Sbjct: 507 -GGASGLGVLTHRNKDG--TGVRVIVAGTLDINPDDDYG 542
Score = 28.1 bits (62), Expect = 7.2
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 59/159 (37%)
Query: 23 KDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKL--- 79
+HF + + + +++V +P+ I HF G ++I E
Sbjct: 1650 DNHFKDTYGFSILDIVIN----------NPVNLTI---HF---GGEKG--KRIRENYSAM 1691
Query: 80 --RLFKGGLLKGQHVGGKEYPPN-----YGRPKSKCDI----QP---------------- 112
G LK + + KE + + K QP
Sbjct: 1692 IFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 113 -DEPAVCYFAGDS---------RANQNSFLTPLQVLFLR 141
PA FAG S A+ S + ++V+F R
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 4e-06
Identities = 47/355 (13%), Positives = 102/355 (28%), Gaps = 86/355 (24%)
Query: 45 DLGCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNY--- 101
+L C ++ T F V+ + L L + K Y
Sbjct: 263 NLSCK------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDC 313
Query: 102 ---GRPKSKCDIQPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWD 158
P+ P + A R ++ V +L I+ + +
Sbjct: 314 RPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-E 370
Query: 159 DERLYQEA---RK------TVIGIYQW---ITYEEMLPVLIDITYMMIAKSGK------- 199
+++ ++ + W I + M+ V Y ++ K K
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 200 ------AAQIDMVTWMHRPSIVQGY---------------LD---------HLLEGQQTQ 229
+++ +HR SIV Y LD HL + +
Sbjct: 430 SIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 230 FIQPFEDWWEDFN-INNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGL 288
+ F + DF + K++ + + + T ++ + Y ++ + +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERL--V 545
Query: 289 KPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYV 343
+ F + E +L+ K+ D + + L +++F V
Sbjct: 546 NAILDF-----LPKIEE-NLIC--SKYTDLLRI----ALMAE-DEAIFEEAHKQV 587
Score = 34.8 bits (79), Expect = 0.049
Identities = 60/371 (16%), Positives = 107/371 (28%), Gaps = 113/371 (30%)
Query: 73 RKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKS--KCDIQPDEPAVCYFAGD----SRA 126
R+ +LR K L+ G V G G K+ D+ C +
Sbjct: 141 RQALLELRPAKNVLIDG--VLG------SG--KTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 127 NQNS---FLTPLQVLFLRL-HNILAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEM 182
N NS L LQ L ++ N +R +H + + + + + + YE
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRS----DHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 183 LPVLIDITYMMIAK-----------SGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFI 231
L VL+++ + D ++ I + L + + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 232 QPFEDWWEDFNINNK------LKTNHPPFQYDPHGDDLTAIG---------IQRQRDYGM 276
+ + + L TN P + L+ I +
Sbjct: 307 --LLKY---LDCRPQDLPREVLTTN--PRR-------LSIIAESIRDGLATWDNWKHVNC 352
Query: 277 PGYNEFRK--YAGLKPV---KSFEELSDVIGPENIH------------------------ 307
+ L+P K F+ LS + P + H
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 308 -----LLKLGYK----HVDDIDLFVGGYLEN--PLHDSLFGPTFTYVIADQFYRWKFG-- 354
L++ K + I L + LEN LH S+ Y I F
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---HYNIPKTFDSDDLIPP 467
Query: 355 --DRFWFSVLG 363
D++++S +G
Sbjct: 468 YLDQYFYSHIG 478
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative
initiati amino-acid biosynthesis, ATP-binding; HET: LYS;
2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Length = 421
Score = 29.0 bits (66), Expect = 2.3
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 159 DERLYQEARKTVIGIYQWITYEEML 183
D R+ A+K + +++EEML
Sbjct: 183 DPRIVPNAQKL-----EKLSFEEML 202
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET:
LYS; 2.54A {Synechocystis}
Length = 600
Score = 29.1 bits (66), Expect = 2.7
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 159 DERLYQEARKTVIGIYQWITYEEML 183
D RL EA+ IT +EML
Sbjct: 184 DPRLVPEAQLM-----AEITCDEML 203
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 28.2 bits (63), Expect = 4.6
Identities = 23/144 (15%), Positives = 35/144 (24%), Gaps = 20/144 (13%)
Query: 239 EDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGY---NEFRK-----YAGLKP 290
E I P P + R G+ Y N F G+
Sbjct: 256 EGNAIVEFDGARALPAAIAPALSVEAQV--YRALVLGVRDYIGKNGFPGAIIGLSGGVDS 313
Query: 291 VKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQF-- 348
D +G E + + + ++ I + + IA F
Sbjct: 314 ALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAAD----MARRVGVRYDEIAIAPMFDA 369
Query: 349 YRWKFGDRFWFSVLGKPWSFTEGN 372
+R F G TE N
Sbjct: 370 FRASLAAEF----AGLAEDATEEN 389
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics;
2.25A {Sinorhizobium meliloti}
Length = 427
Score = 27.4 bits (60), Expect = 9.3
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 33 TCINMVR-GMTTDDLGCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLR 80
C++ V G T DL + P Q + T FLD KI E LR
Sbjct: 383 VCVDTVESGFMTKDLALLIGPDQPWLSTTGFLD---------KIDENLR 422
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.460
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,394,663
Number of extensions: 398376
Number of successful extensions: 740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 19
Length of query: 380
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,049,298
Effective search space: 1154049930
Effective search space used: 1154049930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)