RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy747
(380 letters)
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 260 bits (666), Expect = 3e-83
Identities = 78/364 (21%), Positives = 124/364 (34%), Gaps = 55/364 (15%)
Query: 43 TDDL--GCPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPN 100
T L H +D++ +YG T KLRLFK G LK Q +GG+ YPP
Sbjct: 134 TAQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPT 193
Query: 101 YGRPKSKCDIQPDEPA-VCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDD 159
+ + P P + + G L ++LR H + + + W D
Sbjct: 194 VKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGD 253
Query: 160 ERLYQEARKTVIGIYQWITYEEMLPVLIDITYM-----------------MIAKSGKA-- 200
E+L+Q ++ +IG I E+ + L + IA
Sbjct: 254 EQLFQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLY 313
Query: 201 --------------AQIDMVTWMHRPSIV-QGYLDHLLEGQQTQFIQPFEDWWEDFNINN 245
+ +++ SI+ + L +E Q N
Sbjct: 314 HWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRV------AGGRN 367
Query: 246 KLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPEN 305
+ I + R+ NE+RK LKP SFEEL+ E
Sbjct: 368 ----------VPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEM 415
Query: 306 IHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKP 365
LK Y +D ++L+ +E P D++FG T + A + G+ KP
Sbjct: 416 AAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKP 475
Query: 366 WSFT 369
+F
Sbjct: 476 STFG 479
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 259 bits (664), Expect = 5e-83
Identities = 75/341 (21%), Positives = 118/341 (34%), Gaps = 21/341 (6%)
Query: 48 CPLSPIQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKSK 107
L H +D+ +YG + +LRLFK G LK Q + G+ YPP+
Sbjct: 140 SGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVL 199
Query: 108 CDIQPDEPA-VCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEA 166
P G L ++LR HN + + W DE+L+Q A
Sbjct: 200 MHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTA 259
Query: 167 RKTVIGIYQWITYEEMLPVLIDITYMMI--------AKSGKAAQIDMVTWMHR------- 211
R +IG I EE + L + A+ +I M
Sbjct: 260 RLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMP 319
Query: 212 PSIVQGYLDHLLE---GQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGI 268
S G D+ E + + + D D H + I
Sbjct: 320 DSFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVI 379
Query: 269 QRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLE 328
+ R + +NE+RK G+KP SF+EL+ E L+ Y +D ++ + G LE
Sbjct: 380 KESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLE 437
Query: 329 NPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 369
+S+FG + + A + G+ K +F
Sbjct: 438 KCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFG 478
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 261 bits (667), Expect = 7e-83
Identities = 100/407 (24%), Positives = 159/407 (39%), Gaps = 56/407 (13%)
Query: 4 CCAQDYVSDLDTCLPIPILKDHFYNNHSVTCINMVRGMTTDDLGCPLSPIQHVIDLTHFL 63
+ C P+ I + + CI R G ++ + LT F+
Sbjct: 105 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACP-GSNITIRNQINALTSFV 163
Query: 64 DVSPVYGSTRKIAEKLRLFKGGLLKGQHVG-----GKEYPPNYGRPKSKCDIQPDEPAV- 117
D S VYGS +A LR L G+ P C + +
Sbjct: 164 DASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIP 223
Query: 118 CYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIGIYQWI 177
C+ AGD+R+++ LT + L LR HN LA E +N WD ERLYQEARK V + Q I
Sbjct: 224 CFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQII 283
Query: 178 TYEEMLPVLIDITYMM-------------------------------------------- 193
TY + LP+++ T M
Sbjct: 284 TYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQ 343
Query: 194 IAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPP 253
+ + V + +++G +D +L P + ++ +++
Sbjct: 344 PMEPNPRVPLSRVFFASWRVVLEGGIDPILR---GLMATPAKLNRQNQIAVDEI-RERLF 399
Query: 254 FQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIG-PENIHLLKLG 312
Q G DL A+ +QR RD+G+PGYN +R++ GL ++ +L V+ + L
Sbjct: 400 EQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQ 459
Query: 313 YKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWF 359
Y ++ID+++GG E GP +I QF + + GDRFW+
Sbjct: 460 YGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWW 506
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 248
Score = 30.8 bits (68), Expect = 0.19
Identities = 23/197 (11%), Positives = 57/197 (28%), Gaps = 6/197 (3%)
Query: 53 IQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKSKCDIQP 112
+QHVID + L + V+ + L+ + ++ + ++
Sbjct: 33 VQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFAD 92
Query: 113 DEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIG 172
DE + + + + +L + + R + V
Sbjct: 93 DEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEH 152
Query: 173 IYQWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLL---EGQQTQ 229
E+ I+ ++ + + +T + L EG++
Sbjct: 153 KDAT--DEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIV 210
Query: 230 FIQPFEDWWEDFNINNK 246
+ P + E +NN+
Sbjct: 211 AVHP-QRLSEVEGVNNR 226
>d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Thermotoga maritima [TaxId: 2336]}
Length = 284
Score = 27.2 bits (59), Expect = 3.3
Identities = 22/198 (11%), Positives = 55/198 (27%), Gaps = 27/198 (13%)
Query: 53 IQHVIDL--THFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKSKCDI 110
+ I + D + Y + + + K + + +
Sbjct: 32 VYEAIKVGYRLI-DTAASYMNEEGVGRAI---------------KRAIDEGIVRREELFV 75
Query: 111 QPDEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTV 170
++ L LQ+ ++ L+ I E +Y+
Sbjct: 76 TTKLWVSDVGYESTKKAFEKSLKKLQLEYIDLYLIHQPFGDVHCAWKAMEEMYK------ 129
Query: 171 IGIYQWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQF 230
G+ + I P + + QI++ + R ++ ++ Q +
Sbjct: 130 DGLVRAIGVSNFYPDRLMDLMVHHEIVPAVNQIEIHPFYQRQEEIEFMRNY---NIQPEA 186
Query: 231 IQPFEDWWEDFNINNKLK 248
PF + ++ N L+
Sbjct: 187 WGPFAEGRKNIFQNGVLR 204
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 27.1 bits (59), Expect = 3.5
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 236 DWWEDFNINNKLKTNHPPFQYDPHGDDLTAI--GIQRQRDYGMPGYNEFRKYAGLK--PV 291
D W I +L P D D LT I + + P Y K P
Sbjct: 183 DMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPG 242
Query: 292 KSFEELSDVIGPENIHLLK 310
+ G + + L++
Sbjct: 243 IPLHHIFSAAGDDLLDLIQ 261
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 250
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/198 (10%), Positives = 55/198 (27%), Gaps = 5/198 (2%)
Query: 53 IQHVIDLTHFLDVSPVYGSTRKIAEKLRLFKGGLLKGQHVGGKEYPPNYGRPKSKCDIQP 112
++HV + AE + G + + + ++
Sbjct: 32 LEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGTGHAVMMTEPI-LEG 90
Query: 113 DEPAVCYFAGDSRANQNSFLTPLQVLFLRLHNILAREFAKINHHWDDERLYQEARKTVIG 172
AGD+ L L + N+ A+ ++ + R+ + V+
Sbjct: 91 LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLR 150
Query: 173 IYQWITYEEMLPVLIDITYMMIAKSGKAAQIDMVTWMHRPSIVQGYLDH----LLEGQQT 228
I + + + +I + + + + Y+ E +
Sbjct: 151 IVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEK 210
Query: 229 QFIQPFEDWWEDFNINNK 246
+D+ E +N++
Sbjct: 211 VGAYTLKDFDESLGVNDR 228
>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus
[TaxId: 274]}
Length = 256
Score = 25.6 bits (55), Expect = 9.1
Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 146 LAREFAKINHHWDDERLYQEARKTVIGIYQWITYEEMLPVLIDITYMMIAKSGKAAQIDM 205
L A++ + ERL EA K + + + + ++ + +D
Sbjct: 30 LKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDY 89
Query: 206 VTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNIN 244
+ + + ++ +DW ++
Sbjct: 90 LVHAIAFAPREAMEGRYID-------TRRQDWLLALEVS 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.460
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,621,183
Number of extensions: 81130
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 14
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)